data_3BII # _entry.id 3BII # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3BII RCSB RCSB045562 WWPDB D_1000045562 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1FM0 'Monoclinic Crystal Form of E.coli Molybdopterin Synthase' unspecified PDB 1FMA 'Monoclinic Crystal Form of E.coli Molybdopterin Synthase - Covalent Complex' unspecified PDB 1NVI 'Orthorhombic form of the E.coli MPT synthase' unspecified PDB 1NVJ 'Deletion Mutant (Delta 141) of Molybdopterin Synthase' unspecified PDB 2Q5W 'Monoclinic form of the S.aureus MPT synthase' unspecified PDB 2QIE 'Orthorhombic form of the S.aureus MPT synthase in complex with Precursor Z' unspecified # _pdbx_database_status.entry_id 3BII _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-11-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Daniels, J.N.' 1 'Schindelin, H.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency. ; Biochemistry 47 615 626 2008 BICHAW US 0006-2960 0033 ? 18092812 10.1021/bi701734g 1 'Structural studies of molybdopterin synthase provide insights into its catalytic mechanism' J.Biol.Chem. 272 14514 14522 2003 JBCHA3 US 0021-9258 0071 ? 12571227 10.1074/jbc.M300449200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Daniels, J.N.' 1 primary 'Wuebbens, M.M.' 2 primary 'Rajagopalan, K.V.' 3 primary 'Schindelin, H.' 4 1 'Rudolph, M.J.' 5 1 'Wuebbens, M.M.' 6 1 'Turque, O.' 7 1 'Rajagopalan, K.V.' 8 1 'Schindelin, H.' 9 # _cell.length_a 64.796 _cell.length_b 48.735 _cell.length_c 74.915 _cell.angle_alpha 90.000 _cell.angle_beta 107.770 _cell.angle_gamma 90.000 _cell.entry_id 3BII _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3BII _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Molybdopterin-converting factor subunit 1' 8780.944 1 ? ? ? ? 2 polymer man 'Molybdopterin-converting factor subunit 2' 16871.826 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 water nat water 18.015 95 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;MPT synthase subunit 1, Molybdopterin synthase subunit 1, Molybdenum cofactor biosynthesis protein D, Molybdopterin-converting factor small subunit ; 2 ;MPT synthase subunit 2, Molybdopterin synthase subunit 2, Molybdenum cofactor biosynthesis protein E, Molybdopterin-converting factor large subunit ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTG (GL3) ; ;MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTG G ; D ? 2 'polypeptide(L)' no no ;AETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTV IHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW ; ;AETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTV IHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 LYS n 1 4 VAL n 1 5 LEU n 1 6 PHE n 1 7 PHE n 1 8 ALA n 1 9 GLN n 1 10 VAL n 1 11 ARG n 1 12 GLU n 1 13 LEU n 1 14 VAL n 1 15 GLY n 1 16 THR n 1 17 ASP n 1 18 ALA n 1 19 THR n 1 20 GLU n 1 21 VAL n 1 22 ALA n 1 23 ALA n 1 24 ASP n 1 25 PHE n 1 26 PRO n 1 27 THR n 1 28 VAL n 1 29 GLU n 1 30 ALA n 1 31 LEU n 1 32 ARG n 1 33 GLN n 1 34 HIS n 1 35 MET n 1 36 ALA n 1 37 ALA n 1 38 GLN n 1 39 SER n 1 40 ASP n 1 41 ARG n 1 42 TRP n 1 43 ALA n 1 44 LEU n 1 45 ALA n 1 46 LEU n 1 47 GLU n 1 48 ASP n 1 49 GLY n 1 50 LYS n 1 51 LEU n 1 52 LEU n 1 53 ALA n 1 54 ALA n 1 55 VAL n 1 56 ASN n 1 57 GLN n 1 58 THR n 1 59 LEU n 1 60 VAL n 1 61 SER n 1 62 PHE n 1 63 ASP n 1 64 HIS n 1 65 PRO n 1 66 LEU n 1 67 THR n 1 68 ASP n 1 69 GLY n 1 70 ASP n 1 71 GLU n 1 72 VAL n 1 73 ALA n 1 74 PHE n 1 75 PHE n 1 76 PRO n 1 77 PRO n 1 78 VAL n 1 79 THR n 1 80 GLY n 1 81 GL3 n 2 1 ALA n 2 2 GLU n 2 3 THR n 2 4 LYS n 2 5 ILE n 2 6 VAL n 2 7 VAL n 2 8 GLY n 2 9 PRO n 2 10 GLN n 2 11 PRO n 2 12 PHE n 2 13 SER n 2 14 VAL n 2 15 GLY n 2 16 GLU n 2 17 GLU n 2 18 TYR n 2 19 PRO n 2 20 TRP n 2 21 LEU n 2 22 ALA n 2 23 GLU n 2 24 ARG n 2 25 ASP n 2 26 GLU n 2 27 ASP n 2 28 GLY n 2 29 ALA n 2 30 VAL n 2 31 VAL n 2 32 THR n 2 33 PHE n 2 34 THR n 2 35 GLY n 2 36 LYS n 2 37 VAL n 2 38 ARG n 2 39 ASN n 2 40 HIS n 2 41 ASN n 2 42 LEU n 2 43 GLY n 2 44 ASP n 2 45 SER n 2 46 VAL n 2 47 ASN n 2 48 ALA n 2 49 LEU n 2 50 THR n 2 51 LEU n 2 52 GLU n 2 53 HIS n 2 54 TYR n 2 55 PRO n 2 56 GLY n 2 57 MET n 2 58 THR n 2 59 GLU n 2 60 LYS n 2 61 ALA n 2 62 LEU n 2 63 ALA n 2 64 GLU n 2 65 ILE n 2 66 VAL n 2 67 ASP n 2 68 GLU n 2 69 ALA n 2 70 ARG n 2 71 ASN n 2 72 ARG n 2 73 TRP n 2 74 PRO n 2 75 LEU n 2 76 GLY n 2 77 ARG n 2 78 VAL n 2 79 THR n 2 80 VAL n 2 81 ILE n 2 82 HIS n 2 83 ARG n 2 84 ILE n 2 85 GLY n 2 86 GLU n 2 87 LEU n 2 88 TRP n 2 89 PRO n 2 90 GLY n 2 91 ASP n 2 92 GLU n 2 93 ILE n 2 94 VAL n 2 95 PHE n 2 96 VAL n 2 97 GLY n 2 98 VAL n 2 99 THR n 2 100 SER n 2 101 ALA n 2 102 HIS n 2 103 ARG n 2 104 SER n 2 105 SER n 2 106 ALA n 2 107 PHE n 2 108 GLU n 2 109 ALA n 2 110 GLY n 2 111 GLN n 2 112 PHE n 2 113 ILE n 2 114 MET n 2 115 ASP n 2 116 TYR n 2 117 LEU n 2 118 LYS n 2 119 THR n 2 120 ARG n 2 121 ALA n 2 122 PRO n 2 123 PHE n 2 124 TRP n 2 125 LYS n 2 126 ARG n 2 127 GLU n 2 128 ALA n 2 129 THR n 2 130 PRO n 2 131 GLU n 2 132 GLY n 2 133 ASP n 2 134 ARG n 2 135 TRP n 2 136 VAL n 2 137 GLU n 2 138 ALA n 2 139 ARG n 2 140 GLU n 2 141 SER n 2 142 ASP n 2 143 GLN n 2 144 GLN n 2 145 ALA n 2 146 ALA n 2 147 LYS n 2 148 ARG n 2 149 TRP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Escherichia 'moaD, chlA4, chlM' ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? 'BL21 DE3' ? ? ? ? ? Plasmid ? ? ? pET-15b ? ? 2 1 sample ? ? ? ? Escherichia 'moaE, chlA5' ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? 'BL21 DE3' ? ? ? ? ? plasmid ? ? ? pET-15b ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MOAD_ECOLI P30748 1 ;MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTG G ; 1 ? 2 UNP MOAE_ECOLI P30749 2 ;AETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTV IHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW ; 2 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BII D 1 ? 81 ? P30748 1 ? 81 ? 1 81 2 2 3BII E 1 ? 149 ? P30749 2 ? 150 ? 2 150 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GL3 'L-peptide linking' n THIOGLYCIN ? 'C2 H5 N O S' 91.132 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3BII _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '1.1 Ammonium sulfate and .1M HEPES pH=7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2002-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X26C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X26C # _reflns.entry_id 3BII _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 50.000 _reflns.number_obs 9359 _reflns.pdbx_Rmerge_I_obs 0.096 _reflns.pdbx_netI_over_sigmaI 13.000 _reflns.pdbx_chi_squared 1.505 _reflns.percent_possible_obs 87.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.20 2.28 ? ? ? 0.308 ? ? 0.679 ? ? 820 36.20 ? 1 2.28 2.37 ? ? ? 0.258 ? ? 0.551 ? ? 1365 61.80 ? 2 2.37 2.48 ? ? ? 0.225 ? ? 0.782 ? ? 1928 88.80 ? 3 2.48 2.61 ? ? ? 0.206 ? ? 0.889 ? ? 2129 96.70 ? 4 2.61 2.77 ? ? ? 0.194 ? ? 1.163 ? ? 2175 97.90 ? 5 2.77 2.99 ? ? ? 0.148 ? ? 1.237 ? ? 2177 99.00 ? 6 2.99 3.29 ? ? ? 0.113 ? ? 1.729 ? ? 2195 99.10 ? 7 3.29 3.76 ? ? ? 0.084 ? ? 2.129 ? ? 2177 98.80 ? 8 3.76 4.74 ? ? ? 0.066 ? ? 2.073 ? ? 2192 99.00 ? 9 4.74 50.00 ? ? ? 0.069 ? ? 2.093 ? ? 2201 99.60 ? 10 # _refine.entry_id 3BII _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 40.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.280 _refine.ls_number_reflns_obs 7703 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.261 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 358 _refine.B_iso_mean 36.916 _refine.aniso_B[1][1] -0.040 _refine.aniso_B[2][2] 0.040 _refine.aniso_B[3][3] 0.030 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.060 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.891 _refine.pdbx_overall_ESU_R_Free 0.339 _refine.overall_SU_ML 0.243 _refine.overall_SU_B 20.561 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1800 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1899 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 40.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1844 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2514 1.520 1.935 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 220 6.199 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 91 32.848 23.626 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 297 17.310 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15 15.431 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 282 0.102 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1417 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 858 0.225 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1216 0.310 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 120 0.195 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 46 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1145 0.942 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1816 1.349 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 803 1.946 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 698 3.079 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.640 _refine_ls_shell.number_reflns_R_work 529 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.292 _refine_ls_shell.R_factor_R_free 0.318 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 549 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BII _struct.title 'Crystal Structure of Activated MPT Synthase' _struct.pdbx_descriptor 'Molybdopterin-converting factor subunit 1, Molybdopterin-converting factor subunit 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BII _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'MPT synthase, Moco biosynthesis, MoaE, MoaD, ubiquitin-like, beta-hammerhead fold, Molybdenum cofactor biosynthesis, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 7 ? GLY A 15 ? PHE D 7 GLY D 15 1 ? 9 HELX_P HELX_P2 2 THR A 27 ? ALA A 37 ? THR D 27 ALA D 37 1 ? 11 HELX_P HELX_P3 3 SER A 39 ? GLU A 47 ? SER D 39 GLU D 47 1 ? 9 HELX_P HELX_P4 4 SER B 13 ? ALA B 22 ? SER E 14 ALA E 23 1 ? 10 HELX_P HELX_P5 5 MET B 57 ? TRP B 73 ? MET E 58 TRP E 74 1 ? 17 HELX_P HELX_P6 6 HIS B 102 ? ALA B 121 ? HIS E 103 ALA E 122 1 ? 20 HELX_P HELX_P7 7 ARG B 139 ? ARG B 148 ? ARG E 140 ARG E 149 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 80 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id GL3 _struct_conn.ptnr2_label_seq_id 81 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 80 _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id GL3 _struct_conn.ptnr2_auth_seq_id 81 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.359 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 18 ? VAL A 21 ? ALA D 18 VAL D 21 A 2 ILE A 2 ? PHE A 6 ? ILE D 2 PHE D 6 A 3 GLU A 71 ? PHE A 75 ? GLU D 71 PHE D 75 A 4 LEU A 52 ? VAL A 55 ? LEU D 52 VAL D 55 A 5 THR A 58 ? LEU A 59 ? THR D 58 LEU D 59 B 1 THR B 3 ? GLY B 8 ? THR E 4 GLY E 9 B 2 LEU B 75 ? ARG B 83 ? LEU E 76 ARG E 84 B 3 GLU B 92 ? SER B 100 ? GLU E 93 SER E 101 B 4 ALA B 29 ? LYS B 36 ? ALA E 30 LYS E 37 C 1 GLY B 85 ? LEU B 87 ? GLY E 86 LEU E 88 C 2 LEU B 49 ? HIS B 53 ? LEU E 50 HIS E 54 C 3 PHE B 123 ? THR B 129 ? PHE E 124 THR E 130 C 4 GLY B 132 ? TRP B 135 ? GLY E 133 TRP E 136 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 19 ? O THR D 19 N VAL A 4 ? N VAL D 4 A 2 3 N LYS A 3 ? N LYS D 3 O VAL A 72 ? O VAL D 72 A 3 4 O PHE A 75 ? O PHE D 75 N LEU A 52 ? N LEU D 52 A 4 5 N VAL A 55 ? N VAL D 55 O THR A 58 ? O THR D 58 B 1 2 N LYS B 4 ? N LYS E 5 O VAL B 80 ? O VAL E 81 B 2 3 N ILE B 81 ? N ILE E 82 O PHE B 95 ? O PHE E 96 B 3 4 O VAL B 96 ? O VAL E 97 N PHE B 33 ? N PHE E 34 C 1 2 O LEU B 87 ? O LEU E 88 N LEU B 49 ? N LEU E 50 C 2 3 N GLU B 52 ? N GLU E 53 O TRP B 124 ? O TRP E 125 C 3 4 N GLU B 127 ? N GLU E 128 O ARG B 134 ? O ARG E 135 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CL D 303' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL E 301' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL E 302' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL E 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 33 ? GLN D 33 . ? 1_555 ? 2 AC1 5 HOH G . ? HOH D 310 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH D 336 . ? 4_555 ? 4 AC1 5 TYR B 54 ? TYR E 55 . ? 4_555 ? 5 AC1 5 GLY B 56 ? GLY E 57 . ? 4_555 ? 6 AC2 2 ARG B 38 ? ARG E 39 . ? 1_555 ? 7 AC2 2 ARG B 103 ? ARG E 104 . ? 2_656 ? 8 AC3 3 GLN B 111 ? GLN E 112 . ? 1_555 ? 9 AC3 3 ARG B 148 ? ARG E 149 . ? 1_555 ? 10 AC3 3 HOH H . ? HOH E 316 . ? 1_555 ? 11 AC4 3 ARG B 38 ? ARG E 39 . ? 1_555 ? 12 AC4 3 LEU B 49 ? LEU E 50 . ? 1_555 ? 13 AC4 3 LYS B 125 ? LYS E 126 . ? 1_555 ? # _atom_sites.entry_id 3BII _atom_sites.fract_transf_matrix[1][1] 0.015433 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004947 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020519 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014017 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET D . n A 1 2 ILE 2 2 2 ILE ILE D . n A 1 3 LYS 3 3 3 LYS LYS D . n A 1 4 VAL 4 4 4 VAL VAL D . n A 1 5 LEU 5 5 5 LEU LEU D . n A 1 6 PHE 6 6 6 PHE PHE D . n A 1 7 PHE 7 7 7 PHE PHE D . n A 1 8 ALA 8 8 8 ALA ALA D . n A 1 9 GLN 9 9 9 GLN GLN D . n A 1 10 VAL 10 10 10 VAL VAL D . n A 1 11 ARG 11 11 11 ARG ARG D . n A 1 12 GLU 12 12 12 GLU GLU D . n A 1 13 LEU 13 13 13 LEU LEU D . n A 1 14 VAL 14 14 14 VAL VAL D . n A 1 15 GLY 15 15 15 GLY GLY D . n A 1 16 THR 16 16 16 THR THR D . n A 1 17 ASP 17 17 17 ASP ASP D . n A 1 18 ALA 18 18 18 ALA ALA D . n A 1 19 THR 19 19 19 THR THR D . n A 1 20 GLU 20 20 20 GLU GLU D . n A 1 21 VAL 21 21 21 VAL VAL D . n A 1 22 ALA 22 22 22 ALA ALA D . n A 1 23 ALA 23 23 23 ALA ALA D . n A 1 24 ASP 24 24 24 ASP ASP D . n A 1 25 PHE 25 25 25 PHE PHE D . n A 1 26 PRO 26 26 26 PRO PRO D . n A 1 27 THR 27 27 27 THR THR D . n A 1 28 VAL 28 28 28 VAL VAL D . n A 1 29 GLU 29 29 29 GLU GLU D . n A 1 30 ALA 30 30 30 ALA ALA D . n A 1 31 LEU 31 31 31 LEU LEU D . n A 1 32 ARG 32 32 32 ARG ARG D . n A 1 33 GLN 33 33 33 GLN GLN D . n A 1 34 HIS 34 34 34 HIS HIS D . n A 1 35 MET 35 35 35 MET MET D . n A 1 36 ALA 36 36 36 ALA ALA D . n A 1 37 ALA 37 37 37 ALA ALA D . n A 1 38 GLN 38 38 38 GLN GLN D . n A 1 39 SER 39 39 39 SER SER D . n A 1 40 ASP 40 40 40 ASP ASP D . n A 1 41 ARG 41 41 41 ARG ARG D . n A 1 42 TRP 42 42 42 TRP TRP D . n A 1 43 ALA 43 43 43 ALA ALA D . n A 1 44 LEU 44 44 44 LEU LEU D . n A 1 45 ALA 45 45 45 ALA ALA D . n A 1 46 LEU 46 46 46 LEU LEU D . n A 1 47 GLU 47 47 47 GLU GLU D . n A 1 48 ASP 48 48 48 ASP ASP D . n A 1 49 GLY 49 49 49 GLY GLY D . n A 1 50 LYS 50 50 50 LYS LYS D . n A 1 51 LEU 51 51 51 LEU LEU D . n A 1 52 LEU 52 52 52 LEU LEU D . n A 1 53 ALA 53 53 53 ALA ALA D . n A 1 54 ALA 54 54 54 ALA ALA D . n A 1 55 VAL 55 55 55 VAL VAL D . n A 1 56 ASN 56 56 56 ASN ASN D . n A 1 57 GLN 57 57 57 GLN GLN D . n A 1 58 THR 58 58 58 THR THR D . n A 1 59 LEU 59 59 59 LEU LEU D . n A 1 60 VAL 60 60 60 VAL VAL D . n A 1 61 SER 61 61 61 SER SER D . n A 1 62 PHE 62 62 62 PHE PHE D . n A 1 63 ASP 63 63 63 ASP ASP D . n A 1 64 HIS 64 64 64 HIS HIS D . n A 1 65 PRO 65 65 65 PRO PRO D . n A 1 66 LEU 66 66 66 LEU LEU D . n A 1 67 THR 67 67 67 THR THR D . n A 1 68 ASP 68 68 68 ASP ASP D . n A 1 69 GLY 69 69 69 GLY GLY D . n A 1 70 ASP 70 70 70 ASP ASP D . n A 1 71 GLU 71 71 71 GLU GLU D . n A 1 72 VAL 72 72 72 VAL VAL D . n A 1 73 ALA 73 73 73 ALA ALA D . n A 1 74 PHE 74 74 74 PHE PHE D . n A 1 75 PHE 75 75 75 PHE PHE D . n A 1 76 PRO 76 76 76 PRO PRO D . n A 1 77 PRO 77 77 77 PRO PRO D . n A 1 78 VAL 78 78 78 VAL VAL D . n A 1 79 THR 79 79 79 THR THR D . n A 1 80 GLY 80 80 80 GLY GL3 D . n A 1 81 GL3 81 81 81 GL3 GL3 D . n B 2 1 ALA 1 2 2 ALA ALA E . n B 2 2 GLU 2 3 3 GLU GLU E . n B 2 3 THR 3 4 4 THR THR E . n B 2 4 LYS 4 5 5 LYS LYS E . n B 2 5 ILE 5 6 6 ILE ILE E . n B 2 6 VAL 6 7 7 VAL VAL E . n B 2 7 VAL 7 8 8 VAL VAL E . n B 2 8 GLY 8 9 9 GLY GLY E . n B 2 9 PRO 9 10 10 PRO PRO E . n B 2 10 GLN 10 11 11 GLN GLN E . n B 2 11 PRO 11 12 12 PRO PRO E . n B 2 12 PHE 12 13 13 PHE PHE E . n B 2 13 SER 13 14 14 SER SER E . n B 2 14 VAL 14 15 15 VAL VAL E . n B 2 15 GLY 15 16 16 GLY GLY E . n B 2 16 GLU 16 17 17 GLU GLU E . n B 2 17 GLU 17 18 18 GLU GLU E . n B 2 18 TYR 18 19 19 TYR TYR E . n B 2 19 PRO 19 20 20 PRO PRO E . n B 2 20 TRP 20 21 21 TRP TRP E . n B 2 21 LEU 21 22 22 LEU LEU E . n B 2 22 ALA 22 23 23 ALA ALA E . n B 2 23 GLU 23 24 24 GLU GLU E . n B 2 24 ARG 24 25 25 ARG ARG E . n B 2 25 ASP 25 26 26 ASP ASP E . n B 2 26 GLU 26 27 27 GLU GLU E . n B 2 27 ASP 27 28 28 ASP ASP E . n B 2 28 GLY 28 29 29 GLY GLY E . n B 2 29 ALA 29 30 30 ALA ALA E . n B 2 30 VAL 30 31 31 VAL VAL E . n B 2 31 VAL 31 32 32 VAL VAL E . n B 2 32 THR 32 33 33 THR THR E . n B 2 33 PHE 33 34 34 PHE PHE E . n B 2 34 THR 34 35 35 THR THR E . n B 2 35 GLY 35 36 36 GLY GLY E . n B 2 36 LYS 36 37 37 LYS LYS E . n B 2 37 VAL 37 38 38 VAL VAL E . n B 2 38 ARG 38 39 39 ARG ARG E . n B 2 39 ASN 39 40 ? ? ? E . n B 2 40 HIS 40 41 ? ? ? E . n B 2 41 ASN 41 42 ? ? ? E . n B 2 42 LEU 42 43 ? ? ? E . n B 2 43 GLY 43 44 ? ? ? E . n B 2 44 ASP 44 45 ? ? ? E . n B 2 45 SER 45 46 ? ? ? E . n B 2 46 VAL 46 47 47 VAL VAL E . n B 2 47 ASN 47 48 48 ASN ASN E . n B 2 48 ALA 48 49 49 ALA ALA E . n B 2 49 LEU 49 50 50 LEU LEU E . n B 2 50 THR 50 51 51 THR THR E . n B 2 51 LEU 51 52 52 LEU LEU E . n B 2 52 GLU 52 53 53 GLU GLU E . n B 2 53 HIS 53 54 54 HIS HIS E . n B 2 54 TYR 54 55 55 TYR TYR E . n B 2 55 PRO 55 56 56 PRO PRO E . n B 2 56 GLY 56 57 57 GLY GLY E . n B 2 57 MET 57 58 58 MET MET E . n B 2 58 THR 58 59 59 THR THR E . n B 2 59 GLU 59 60 60 GLU GLU E . n B 2 60 LYS 60 61 61 LYS LYS E . n B 2 61 ALA 61 62 62 ALA ALA E . n B 2 62 LEU 62 63 63 LEU LEU E . n B 2 63 ALA 63 64 64 ALA ALA E . n B 2 64 GLU 64 65 65 GLU GLU E . n B 2 65 ILE 65 66 66 ILE ILE E . n B 2 66 VAL 66 67 67 VAL VAL E . n B 2 67 ASP 67 68 68 ASP ASP E . n B 2 68 GLU 68 69 69 GLU GLU E . n B 2 69 ALA 69 70 70 ALA ALA E . n B 2 70 ARG 70 71 71 ARG ARG E . n B 2 71 ASN 71 72 72 ASN ASN E . n B 2 72 ARG 72 73 73 ARG ARG E . n B 2 73 TRP 73 74 74 TRP TRP E . n B 2 74 PRO 74 75 75 PRO PRO E . n B 2 75 LEU 75 76 76 LEU LEU E . n B 2 76 GLY 76 77 77 GLY GLY E . n B 2 77 ARG 77 78 78 ARG ARG E . n B 2 78 VAL 78 79 79 VAL VAL E . n B 2 79 THR 79 80 80 THR THR E . n B 2 80 VAL 80 81 81 VAL VAL E . n B 2 81 ILE 81 82 82 ILE ILE E . n B 2 82 HIS 82 83 83 HIS HIS E . n B 2 83 ARG 83 84 84 ARG ARG E . n B 2 84 ILE 84 85 85 ILE ILE E . n B 2 85 GLY 85 86 86 GLY GLY E . n B 2 86 GLU 86 87 87 GLU GLU E . n B 2 87 LEU 87 88 88 LEU LEU E . n B 2 88 TRP 88 89 89 TRP TRP E . n B 2 89 PRO 89 90 90 PRO PRO E . n B 2 90 GLY 90 91 91 GLY GLY E . n B 2 91 ASP 91 92 92 ASP ASP E . n B 2 92 GLU 92 93 93 GLU GLU E . n B 2 93 ILE 93 94 94 ILE ILE E . n B 2 94 VAL 94 95 95 VAL VAL E . n B 2 95 PHE 95 96 96 PHE PHE E . n B 2 96 VAL 96 97 97 VAL VAL E . n B 2 97 GLY 97 98 98 GLY GLY E . n B 2 98 VAL 98 99 99 VAL VAL E . n B 2 99 THR 99 100 100 THR THR E . n B 2 100 SER 100 101 101 SER SER E . n B 2 101 ALA 101 102 102 ALA ALA E . n B 2 102 HIS 102 103 103 HIS HIS E . n B 2 103 ARG 103 104 104 ARG ARG E . n B 2 104 SER 104 105 105 SER SER E . n B 2 105 SER 105 106 106 SER SER E . n B 2 106 ALA 106 107 107 ALA ALA E . n B 2 107 PHE 107 108 108 PHE PHE E . n B 2 108 GLU 108 109 109 GLU GLU E . n B 2 109 ALA 109 110 110 ALA ALA E . n B 2 110 GLY 110 111 111 GLY GLY E . n B 2 111 GLN 111 112 112 GLN GLN E . n B 2 112 PHE 112 113 113 PHE PHE E . n B 2 113 ILE 113 114 114 ILE ILE E . n B 2 114 MET 114 115 115 MET MET E . n B 2 115 ASP 115 116 116 ASP ASP E . n B 2 116 TYR 116 117 117 TYR TYR E . n B 2 117 LEU 117 118 118 LEU LEU E . n B 2 118 LYS 118 119 119 LYS LYS E . n B 2 119 THR 119 120 120 THR THR E . n B 2 120 ARG 120 121 121 ARG ARG E . n B 2 121 ALA 121 122 122 ALA ALA E . n B 2 122 PRO 122 123 123 PRO PRO E . n B 2 123 PHE 123 124 124 PHE PHE E . n B 2 124 TRP 124 125 125 TRP TRP E . n B 2 125 LYS 125 126 126 LYS LYS E . n B 2 126 ARG 126 127 127 ARG ARG E . n B 2 127 GLU 127 128 128 GLU GLU E . n B 2 128 ALA 128 129 129 ALA ALA E . n B 2 129 THR 129 130 130 THR THR E . n B 2 130 PRO 130 131 131 PRO PRO E . n B 2 131 GLU 131 132 132 GLU GLU E . n B 2 132 GLY 132 133 133 GLY GLY E . n B 2 133 ASP 133 134 134 ASP ASP E . n B 2 134 ARG 134 135 135 ARG ARG E . n B 2 135 TRP 135 136 136 TRP TRP E . n B 2 136 VAL 136 137 137 VAL VAL E . n B 2 137 GLU 137 138 138 GLU GLU E . n B 2 138 ALA 138 139 139 ALA ALA E . n B 2 139 ARG 139 140 140 ARG ARG E . n B 2 140 GLU 140 141 141 GLU GLU E . n B 2 141 SER 141 142 142 SER SER E . n B 2 142 ASP 142 143 143 ASP ASP E . n B 2 143 GLN 143 144 144 GLN GLN E . n B 2 144 GLN 144 145 145 GLN GLN E . n B 2 145 ALA 145 146 146 ALA ALA E . n B 2 146 ALA 146 147 147 ALA ALA E . n B 2 147 LYS 147 148 148 LYS LYS E . n B 2 148 ARG 148 149 149 ARG ARG E . n B 2 149 TRP 149 150 150 TRP TRP E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 303 303 CL CL D . D 3 CL 1 301 301 CL CL E . E 3 CL 1 302 302 CL CL E . F 3 CL 1 304 304 CL CL E . G 4 HOH 1 304 5 HOH HOH D . G 4 HOH 2 305 6 HOH HOH D . G 4 HOH 3 306 7 HOH HOH D . G 4 HOH 4 307 8 HOH HOH D . G 4 HOH 5 308 13 HOH HOH D . G 4 HOH 6 309 14 HOH HOH D . G 4 HOH 7 310 15 HOH HOH D . G 4 HOH 8 311 18 HOH HOH D . G 4 HOH 9 312 20 HOH HOH D . G 4 HOH 10 313 23 HOH HOH D . G 4 HOH 11 314 26 HOH HOH D . G 4 HOH 12 315 30 HOH HOH D . G 4 HOH 13 316 33 HOH HOH D . G 4 HOH 14 317 35 HOH HOH D . G 4 HOH 15 318 37 HOH HOH D . G 4 HOH 16 319 38 HOH HOH D . G 4 HOH 17 320 42 HOH HOH D . G 4 HOH 18 321 44 HOH HOH D . G 4 HOH 19 322 50 HOH HOH D . G 4 HOH 20 323 52 HOH HOH D . G 4 HOH 21 324 53 HOH HOH D . G 4 HOH 22 325 58 HOH HOH D . G 4 HOH 23 326 65 HOH HOH D . G 4 HOH 24 327 71 HOH HOH D . G 4 HOH 25 328 72 HOH HOH D . G 4 HOH 26 329 80 HOH HOH D . G 4 HOH 27 330 83 HOH HOH D . G 4 HOH 28 331 84 HOH HOH D . G 4 HOH 29 332 85 HOH HOH D . G 4 HOH 30 333 88 HOH HOH D . G 4 HOH 31 334 90 HOH HOH D . G 4 HOH 32 335 91 HOH HOH D . G 4 HOH 33 336 95 HOH HOH D . G 4 HOH 34 337 97 HOH HOH D . H 4 HOH 1 305 4 HOH HOH E . H 4 HOH 2 306 9 HOH HOH E . H 4 HOH 3 307 11 HOH HOH E . H 4 HOH 4 308 12 HOH HOH E . H 4 HOH 5 309 16 HOH HOH E . H 4 HOH 6 310 17 HOH HOH E . H 4 HOH 7 311 19 HOH HOH E . H 4 HOH 8 312 21 HOH HOH E . H 4 HOH 9 313 22 HOH HOH E . H 4 HOH 10 314 24 HOH HOH E . H 4 HOH 11 315 25 HOH HOH E . H 4 HOH 12 316 27 HOH HOH E . H 4 HOH 13 317 28 HOH HOH E . H 4 HOH 14 318 29 HOH HOH E . H 4 HOH 15 319 31 HOH HOH E . H 4 HOH 16 320 34 HOH HOH E . H 4 HOH 17 321 36 HOH HOH E . H 4 HOH 18 322 39 HOH HOH E . H 4 HOH 19 323 40 HOH HOH E . H 4 HOH 20 324 41 HOH HOH E . H 4 HOH 21 325 43 HOH HOH E . H 4 HOH 22 326 45 HOH HOH E . H 4 HOH 23 327 46 HOH HOH E . H 4 HOH 24 328 47 HOH HOH E . H 4 HOH 25 329 48 HOH HOH E . H 4 HOH 26 330 49 HOH HOH E . H 4 HOH 27 331 51 HOH HOH E . H 4 HOH 28 332 54 HOH HOH E . H 4 HOH 29 333 55 HOH HOH E . H 4 HOH 30 334 56 HOH HOH E . H 4 HOH 31 335 57 HOH HOH E . H 4 HOH 32 336 59 HOH HOH E . H 4 HOH 33 337 60 HOH HOH E . H 4 HOH 34 338 61 HOH HOH E . H 4 HOH 35 339 62 HOH HOH E . H 4 HOH 36 340 63 HOH HOH E . H 4 HOH 37 341 64 HOH HOH E . H 4 HOH 38 342 66 HOH HOH E . H 4 HOH 39 343 67 HOH HOH E . H 4 HOH 40 344 68 HOH HOH E . H 4 HOH 41 345 69 HOH HOH E . H 4 HOH 42 346 70 HOH HOH E . H 4 HOH 43 347 73 HOH HOH E . H 4 HOH 44 348 74 HOH HOH E . H 4 HOH 45 349 75 HOH HOH E . H 4 HOH 46 350 76 HOH HOH E . H 4 HOH 47 351 77 HOH HOH E . H 4 HOH 48 352 78 HOH HOH E . H 4 HOH 49 353 79 HOH HOH E . H 4 HOH 50 354 81 HOH HOH E . H 4 HOH 51 355 82 HOH HOH E . H 4 HOH 52 356 86 HOH HOH E . H 4 HOH 53 357 87 HOH HOH E . H 4 HOH 54 358 89 HOH HOH E . H 4 HOH 55 359 92 HOH HOH E . H 4 HOH 56 360 93 HOH HOH E . H 4 HOH 57 361 94 HOH HOH E . H 4 HOH 58 362 96 HOH HOH E . H 4 HOH 59 363 98 HOH HOH E . H 4 HOH 60 364 99 HOH HOH E . H 4 HOH 61 365 10 HOH HOH E . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id GL3 _pdbx_struct_mod_residue.label_seq_id 81 _pdbx_struct_mod_residue.auth_asym_id D _pdbx_struct_mod_residue.auth_comp_id GL3 _pdbx_struct_mod_residue.auth_seq_id 81 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLY _pdbx_struct_mod_residue.details THIOGLYCIN # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 7690 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 41.9321870247 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 71.3407547004 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 E GLU 60 ? B O E HOH 355 ? ? 2.12 2 1 O D HOH 310 ? ? O D HOH 329 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 D _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 317 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 E _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 307 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.18 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 E _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 50 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 E _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 50 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 E _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 50 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.60 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 15.30 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA D 8 ? ? 57.49 -134.86 2 1 ALA D 22 ? ? -30.21 109.48 3 1 ALA D 23 ? ? -60.34 49.99 4 1 ASP D 68 ? ? -36.57 121.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E ASN 40 ? B ASN 39 2 1 Y 1 E HIS 41 ? B HIS 40 3 1 Y 1 E ASN 42 ? B ASN 41 4 1 Y 1 E LEU 43 ? B LEU 42 5 1 Y 1 E GLY 44 ? B GLY 43 6 1 Y 1 E ASP 45 ? B ASP 44 7 1 Y 1 E SER 46 ? B SER 45 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH #