data_3BJY # _entry.id 3BJY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BJY pdb_00003bjy 10.2210/pdb3bjy/pdb NDB PD1051 ? ? RCSB RCSB045612 ? ? WWPDB D_1000045612 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2AQ4 _pdbx_database_related.details 'catalytic core of Rev1 in complex with DNA and incoming nulceotide' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3BJY _pdbx_database_status.recvd_initial_deposition_date 2007-12-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nair, D.T.' 1 'Johnson, R.E.' 2 'Prakash, L.' 3 'Prakash, S.' 4 'Aggarwal, A.K.' 5 # _citation.id primary _citation.title 'Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 239 _citation.page_last 245 _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18275815 _citation.pdbx_database_id_DOI 10.1016/j.str.2007.12.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nair, D.T.' 1 ? primary 'Johnson, R.E.' 2 ? primary 'Prakash, L.' 3 ? primary 'Prakash, S.' 4 ? primary 'Aggarwal, A.K.' 5 ? # _cell.entry_id 3BJY _cell.length_a 181.062 _cell.length_b 199.578 _cell.length_c 55.677 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BJY _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA repair protein REV1' 49452.965 1 2.7.7.- ? 'catalytic core' ? 2 polymer syn ;DNA (5'-D(*DTP*DAP*DAP*(P)P*DGP*DTP*DAP*DGP*DGP*DGP*DGP*DAP*DGP*DGP*DAP*DT)-3') ; 5107.365 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*DAP*DTP*DCP*DCP*DTP*DCP*DCP*DCP*DCP*DTP*DAP*(DOC))-3') ; 3502.308 1 ? ? ? ? 4 non-polymer syn "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" 467.157 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 6 water nat water 18.015 158 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KRIVACDDPDFLTSYFAHSRLHHLSAWKANLKDKFLNENIHKYTKITDKDTYIIFHIDFDCFFATVAYLCRSSSFSACDF KRDPIVVCHGTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPI SIDEAVCVRIIPDNIHNTNTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKSNLSEEFWSS FKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLS IDINWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEF GIIATEMKSLYRTLGCPPMELRGLALQFNKLVDV ; ;KRIVACDDPDFLTSYFAHSRLHHLSAWKANLKDKFLNENIHKYTKITDKDTYIIFHIDFDCFFATVAYLCRSSSFSACDF KRDPIVVCHGTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPI SIDEAVCVRIIPDNIHNTNTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKSNLSEEFWSS FKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLS IDINWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEF GIIATEMKSLYRTLGCPPMELRGLALQFNKLVDV ; A ? 2 polydeoxyribonucleotide no yes '(DT)(DA)(DA)(P)(DG)(DT)(DA)(DG)(DG)(DG)(DG)(DA)(DG)(DG)(DA)(DT)' TAAGGTAGGGGAGGAT T ? 3 polydeoxyribonucleotide no yes '(DA)(DT)(DC)(DC)(DT)(DC)(DC)(DC)(DC)(DT)(DA)(DOC)' ATCCTCCCCTAC P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ARG n 1 3 ILE n 1 4 VAL n 1 5 ALA n 1 6 CYS n 1 7 ASP n 1 8 ASP n 1 9 PRO n 1 10 ASP n 1 11 PHE n 1 12 LEU n 1 13 THR n 1 14 SER n 1 15 TYR n 1 16 PHE n 1 17 ALA n 1 18 HIS n 1 19 SER n 1 20 ARG n 1 21 LEU n 1 22 HIS n 1 23 HIS n 1 24 LEU n 1 25 SER n 1 26 ALA n 1 27 TRP n 1 28 LYS n 1 29 ALA n 1 30 ASN n 1 31 LEU n 1 32 LYS n 1 33 ASP n 1 34 LYS n 1 35 PHE n 1 36 LEU n 1 37 ASN n 1 38 GLU n 1 39 ASN n 1 40 ILE n 1 41 HIS n 1 42 LYS n 1 43 TYR n 1 44 THR n 1 45 LYS n 1 46 ILE n 1 47 THR n 1 48 ASP n 1 49 LYS n 1 50 ASP n 1 51 THR n 1 52 TYR n 1 53 ILE n 1 54 ILE n 1 55 PHE n 1 56 HIS n 1 57 ILE n 1 58 ASP n 1 59 PHE n 1 60 ASP n 1 61 CYS n 1 62 PHE n 1 63 PHE n 1 64 ALA n 1 65 THR n 1 66 VAL n 1 67 ALA n 1 68 TYR n 1 69 LEU n 1 70 CYS n 1 71 ARG n 1 72 SER n 1 73 SER n 1 74 SER n 1 75 PHE n 1 76 SER n 1 77 ALA n 1 78 CYS n 1 79 ASP n 1 80 PHE n 1 81 LYS n 1 82 ARG n 1 83 ASP n 1 84 PRO n 1 85 ILE n 1 86 VAL n 1 87 VAL n 1 88 CYS n 1 89 HIS n 1 90 GLY n 1 91 THR n 1 92 LYS n 1 93 ASN n 1 94 SER n 1 95 ASP n 1 96 ILE n 1 97 ALA n 1 98 SER n 1 99 CYS n 1 100 ASN n 1 101 TYR n 1 102 VAL n 1 103 ALA n 1 104 ARG n 1 105 SER n 1 106 TYR n 1 107 GLY n 1 108 ILE n 1 109 LYS n 1 110 ASN n 1 111 GLY n 1 112 MET n 1 113 TRP n 1 114 VAL n 1 115 SER n 1 116 GLN n 1 117 ALA n 1 118 GLU n 1 119 LYS n 1 120 MET n 1 121 LEU n 1 122 PRO n 1 123 ASN n 1 124 GLY n 1 125 ILE n 1 126 LYS n 1 127 LEU n 1 128 ILE n 1 129 SER n 1 130 LEU n 1 131 PRO n 1 132 TYR n 1 133 THR n 1 134 PHE n 1 135 GLU n 1 136 GLN n 1 137 PHE n 1 138 GLN n 1 139 LEU n 1 140 LYS n 1 141 SER n 1 142 GLU n 1 143 ALA n 1 144 PHE n 1 145 TYR n 1 146 SER n 1 147 THR n 1 148 LEU n 1 149 LYS n 1 150 ARG n 1 151 LEU n 1 152 ASN n 1 153 ILE n 1 154 PHE n 1 155 ASN n 1 156 LEU n 1 157 ILE n 1 158 LEU n 1 159 PRO n 1 160 ILE n 1 161 SER n 1 162 ILE n 1 163 ASP n 1 164 GLU n 1 165 ALA n 1 166 VAL n 1 167 CYS n 1 168 VAL n 1 169 ARG n 1 170 ILE n 1 171 ILE n 1 172 PRO n 1 173 ASP n 1 174 ASN n 1 175 ILE n 1 176 HIS n 1 177 ASN n 1 178 THR n 1 179 ASN n 1 180 THR n 1 181 LEU n 1 182 ASN n 1 183 ALA n 1 184 ARG n 1 185 LEU n 1 186 CYS n 1 187 GLU n 1 188 GLU n 1 189 ILE n 1 190 ARG n 1 191 GLN n 1 192 GLU n 1 193 ILE n 1 194 PHE n 1 195 GLN n 1 196 GLY n 1 197 THR n 1 198 ASN n 1 199 GLY n 1 200 CYS n 1 201 THR n 1 202 VAL n 1 203 SER n 1 204 ILE n 1 205 GLY n 1 206 CYS n 1 207 SER n 1 208 ASP n 1 209 SER n 1 210 LEU n 1 211 VAL n 1 212 LEU n 1 213 ALA n 1 214 ARG n 1 215 LEU n 1 216 ALA n 1 217 LEU n 1 218 LYS n 1 219 MET n 1 220 ALA n 1 221 LYS n 1 222 PRO n 1 223 ASN n 1 224 GLY n 1 225 TYR n 1 226 ASN n 1 227 ILE n 1 228 THR n 1 229 PHE n 1 230 LYS n 1 231 SER n 1 232 ASN n 1 233 LEU n 1 234 SER n 1 235 GLU n 1 236 GLU n 1 237 PHE n 1 238 TRP n 1 239 SER n 1 240 SER n 1 241 PHE n 1 242 LYS n 1 243 LEU n 1 244 ASP n 1 245 ASP n 1 246 LEU n 1 247 PRO n 1 248 GLY n 1 249 VAL n 1 250 GLY n 1 251 HIS n 1 252 SER n 1 253 THR n 1 254 LEU n 1 255 SER n 1 256 ARG n 1 257 LEU n 1 258 GLU n 1 259 SER n 1 260 THR n 1 261 PHE n 1 262 ASP n 1 263 SER n 1 264 PRO n 1 265 HIS n 1 266 SER n 1 267 LEU n 1 268 ASN n 1 269 ASP n 1 270 LEU n 1 271 ARG n 1 272 LYS n 1 273 ARG n 1 274 TYR n 1 275 THR n 1 276 LEU n 1 277 ASP n 1 278 ALA n 1 279 LEU n 1 280 LYS n 1 281 ALA n 1 282 SER n 1 283 VAL n 1 284 GLY n 1 285 SER n 1 286 LYS n 1 287 LEU n 1 288 GLY n 1 289 MET n 1 290 LYS n 1 291 ILE n 1 292 HIS n 1 293 LEU n 1 294 ALA n 1 295 LEU n 1 296 GLN n 1 297 GLY n 1 298 GLN n 1 299 ASP n 1 300 ASP n 1 301 GLU n 1 302 GLU n 1 303 SER n 1 304 LEU n 1 305 LYS n 1 306 ILE n 1 307 LEU n 1 308 TYR n 1 309 ASP n 1 310 PRO n 1 311 LYS n 1 312 GLU n 1 313 VAL n 1 314 LEU n 1 315 GLN n 1 316 ARG n 1 317 LYS n 1 318 SER n 1 319 LEU n 1 320 SER n 1 321 ILE n 1 322 ASP n 1 323 ILE n 1 324 ASN n 1 325 TRP n 1 326 GLY n 1 327 ILE n 1 328 ARG n 1 329 PHE n 1 330 LYS n 1 331 ASN n 1 332 ILE n 1 333 THR n 1 334 GLN n 1 335 VAL n 1 336 ASP n 1 337 LEU n 1 338 PHE n 1 339 ILE n 1 340 GLU n 1 341 ARG n 1 342 GLY n 1 343 CYS n 1 344 GLN n 1 345 TYR n 1 346 LEU n 1 347 LEU n 1 348 GLU n 1 349 LYS n 1 350 LEU n 1 351 ASN n 1 352 GLU n 1 353 ILE n 1 354 ASN n 1 355 LYS n 1 356 THR n 1 357 THR n 1 358 SER n 1 359 GLN n 1 360 ILE n 1 361 THR n 1 362 LEU n 1 363 LYS n 1 364 LEU n 1 365 MET n 1 366 ARG n 1 367 ARG n 1 368 CYS n 1 369 LYS n 1 370 ASP n 1 371 ALA n 1 372 PRO n 1 373 ILE n 1 374 GLU n 1 375 PRO n 1 376 PRO n 1 377 LYS n 1 378 TYR n 1 379 MET n 1 380 GLY n 1 381 MET n 1 382 GLY n 1 383 ARG n 1 384 CYS n 1 385 ASP n 1 386 SER n 1 387 PHE n 1 388 SER n 1 389 ARG n 1 390 SER n 1 391 SER n 1 392 ARG n 1 393 LEU n 1 394 GLY n 1 395 ILE n 1 396 PRO n 1 397 THR n 1 398 ASN n 1 399 GLU n 1 400 PHE n 1 401 GLY n 1 402 ILE n 1 403 ILE n 1 404 ALA n 1 405 THR n 1 406 GLU n 1 407 MET n 1 408 LYS n 1 409 SER n 1 410 LEU n 1 411 TYR n 1 412 ARG n 1 413 THR n 1 414 LEU n 1 415 GLY n 1 416 CYS n 1 417 PRO n 1 418 PRO n 1 419 MET n 1 420 GLU n 1 421 LEU n 1 422 ARG n 1 423 GLY n 1 424 LEU n 1 425 ALA n 1 426 LEU n 1 427 GLN n 1 428 PHE n 1 429 ASN n 1 430 LYS n 1 431 LEU n 1 432 VAL n 1 433 ASP n 1 434 VAL n 2 1 DT n 2 2 DA n 2 3 DA n 2 4 P n 2 5 DG n 2 6 DT n 2 7 DA n 2 8 DG n 2 9 DG n 2 10 DG n 2 11 DG n 2 12 DA n 2 13 DG n 2 14 DG n 2 15 DA n 2 16 DT n 3 1 DA n 3 2 DT n 3 3 DC n 3 4 DC n 3 5 DT n 3 6 DC n 3 7 DC n 3 8 DC n 3 9 DC n 3 10 DT n 3 11 DA n 3 12 DOC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene REV1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name yeast _entity_src_gen.pdbx_host_org_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BJ5464 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBJ954 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP REV1_YEAST P12689 1 ;KRIVACDDPDFLTSYFAHSRLHHLSAWKANLKDKFLNENIHKYTKITDKDTYIIFHIDFDCFFATVAYLCRSSSFSACDF KRDPIVVCHGTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPI SIDEAVCVRIIPDNIHNTNTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKSNLSEEFWSS FKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLS IDINWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEF GIIATEMKSLYRTLGCPPMELRGLALQFNKLVDV ; 305 ? 2 PDB 3BJY 3BJY 2 TAAPGTAGGGGAGGAT 1 ? 3 PDB 3BJY 3BJY 3 'ATCCTCCCCTA(DOC)' 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BJY A 1 ? 434 ? P12689 305 ? 738 ? 305 738 2 2 3BJY T 1 ? 16 ? 3BJY 1 ? 16 ? 1 16 3 3 3BJY P 1 ? 12 ? 3BJY 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DCP non-polymer . "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" ? 'C9 H16 N3 O13 P3' 467.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DOC 'DNA linking' n "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O6 P' 291.198 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 P 'DNA linking' n ;2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE ; ? 'C13 H18 N5 O7 P' 387.285 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BJY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.35 _exptl_crystal.density_percent_sol 71.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '16% PEG 5K MME, 0.4M Ammonoium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG ? ? ? 1 2 1 'Ammonoium sulfate' ? ? ? 1 3 1 HOH ? ? ? 1 4 2 PEG ? ? ? 1 5 2 'Ammonoium sulfate' ? ? ? 1 6 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 3BJY _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.41 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 38556 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.41 _reflns_shell.d_res_low 2.5 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.164 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.8 _reflns_shell.pdbx_redundancy 4.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3BJY _refine.ls_d_res_high 2.41 _refine.ls_d_res_low 50 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 38556 _refine.ls_number_reflns_R_free 3862 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.231 _refine.ls_R_factor_R_free 0.241 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2AQ4 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3370 _refine_hist.pdbx_number_atoms_nucleic_acid 572 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 4130 _refine_hist.d_res_high 2.41 _refine_hist.d_res_low 50 # _struct.entry_id 3BJY _struct.title 'Catalytic core of Rev1 in complex with DNA (modified template guanine) and incoming nucleotide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BJY _struct_keywords.pdbx_keywords Transferase/DNA _struct_keywords.text ;DNA Polymerase, Protein-DNA complex, adduct, bypass, DNA damage, DNA repair, DNA synthesis, DNA-binding, Magnesium, Metal-binding, Nucleotidyltransferase, Nucleus, Transferase, Transferase-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? SER A 19 ? ASP A 314 SER A 323 1 ? 10 HELX_P HELX_P2 2 SER A 19 ? ASN A 39 ? SER A 323 ASN A 343 1 ? 21 HELX_P HELX_P3 3 CYS A 61 ? CYS A 70 ? CYS A 365 CYS A 374 1 ? 10 HELX_P HELX_P4 4 SER A 72 ? SER A 76 ? SER A 376 SER A 380 5 ? 5 HELX_P HELX_P5 5 ASN A 100 ? TYR A 106 ? ASN A 404 TYR A 410 1 ? 7 HELX_P HELX_P6 6 TRP A 113 ? MET A 120 ? TRP A 417 MET A 424 1 ? 8 HELX_P HELX_P7 7 THR A 133 ? LEU A 151 ? THR A 437 LEU A 455 1 ? 19 HELX_P HELX_P8 8 THR A 180 ? ASN A 198 ? THR A 484 ASN A 502 1 ? 19 HELX_P HELX_P9 9 SER A 209 ? LYS A 221 ? SER A 513 LYS A 525 1 ? 13 HELX_P HELX_P10 10 PHE A 229 ? LEU A 233 ? PHE A 533 LEU A 537 5 ? 5 HELX_P HELX_P11 11 SER A 234 ? SER A 239 ? SER A 538 SER A 543 1 ? 6 HELX_P HELX_P12 12 LYS A 242 ? LEU A 246 ? LYS A 546 LEU A 550 5 ? 5 HELX_P HELX_P13 13 GLY A 250 ? PHE A 261 ? GLY A 554 PHE A 565 1 ? 12 HELX_P HELX_P14 14 SER A 266 ? TYR A 274 ? SER A 570 TYR A 578 1 ? 9 HELX_P HELX_P15 15 THR A 275 ? GLY A 284 ? THR A 579 GLY A 588 1 ? 10 HELX_P HELX_P16 16 GLY A 284 ? LEU A 295 ? GLY A 588 LEU A 599 1 ? 12 HELX_P HELX_P17 17 ASP A 300 ? ASP A 309 ? ASP A 604 ASP A 613 1 ? 10 HELX_P HELX_P18 18 ASP A 309 ? LEU A 314 ? ASP A 613 LEU A 618 1 ? 6 HELX_P HELX_P19 19 ASN A 331 ? ILE A 353 ? ASN A 635 ILE A 657 1 ? 23 HELX_P HELX_P20 20 GLU A 399 ? GLY A 415 ? GLU A 703 GLY A 719 1 ? 17 HELX_P HELX_P21 21 PRO A 417 ? MET A 419 ? PRO A 721 MET A 723 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DOC 12 N3 ? ? T DG 5 P DOC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DOC 12 O2 ? ? T DG 5 P DOC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DOC 12 N4 ? ? T DG 5 P DOC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 11 N1 ? ? T DT 6 P DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 11 N6 ? ? T DT 6 P DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 10 N3 ? ? T DA 7 P DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 10 O4 ? ? T DA 7 P DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 9 N3 ? ? T DG 8 P DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 9 O2 ? ? T DG 8 P DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 9 N4 ? ? T DG 8 P DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 7 N3 ? ? T DG 10 P DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 7 O2 ? ? T DG 10 P DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 7 N4 ? ? T DG 10 P DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 6 N3 ? ? T DG 11 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 6 O2 ? ? T DG 11 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 6 N4 ? ? T DG 11 P DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 5 N3 ? ? T DA 12 P DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 5 O4 ? ? T DA 12 P DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 4 N3 ? ? T DG 13 P DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 4 O2 ? ? T DG 13 P DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 4 N4 ? ? T DG 13 P DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 3 N3 ? ? T DG 14 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 3 O2 ? ? T DG 14 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 3 N4 ? ? T DG 14 P DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 2 N3 ? ? T DA 15 P DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 15 N6 ? ? ? 1_555 C DT 2 O4 ? ? T DA 15 P DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 16 N3 ? ? ? 1_555 C DA 1 N1 ? ? T DT 16 P DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DT 16 O4 ? ? ? 1_555 C DA 1 N6 ? ? T DT 16 P DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 156 ? SER A 161 ? LEU A 460 SER A 465 A 2 GLU A 164 ? ILE A 170 ? GLU A 468 ILE A 474 A 3 TYR A 52 ? PHE A 59 ? TYR A 356 PHE A 363 A 4 VAL A 202 ? SER A 207 ? VAL A 506 SER A 511 A 5 TYR A 225 ? ASN A 226 ? TYR A 529 ASN A 530 B 1 SER A 98 ? CYS A 99 ? SER A 402 CYS A 403 B 2 ILE A 85 ? VAL A 87 ? ILE A 389 VAL A 391 B 3 ILE A 128 ? LEU A 130 ? ILE A 432 LEU A 434 C 1 LEU A 319 ? ILE A 323 ? LEU A 623 ILE A 627 C 2 LEU A 421 ? ASP A 433 ? LEU A 725 ASP A 737 C 3 LYS A 355 ? ARG A 367 ? LYS A 659 ARG A 671 C 4 CYS A 384 ? THR A 397 ? CYS A 688 THR A 701 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 156 ? N LEU A 460 O VAL A 168 ? O VAL A 472 A 2 3 O ALA A 165 ? O ALA A 469 N ILE A 57 ? N ILE A 361 A 3 4 N ILE A 54 ? N ILE A 358 O SER A 207 ? O SER A 511 A 4 5 N CYS A 206 ? N CYS A 510 O ASN A 226 ? O ASN A 530 B 1 2 O SER A 98 ? O SER A 402 N VAL A 87 ? N VAL A 391 B 2 3 N VAL A 86 ? N VAL A 390 O LEU A 130 ? O LEU A 434 C 1 2 N LEU A 319 ? N LEU A 623 O PHE A 428 ? O PHE A 732 C 2 3 O ALA A 425 ? O ALA A 729 N LYS A 363 ? N LYS A 667 C 3 4 N SER A 358 ? N SER A 662 O LEU A 393 ? O LEU A 697 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DCP 739 ? 21 'BINDING SITE FOR RESIDUE DCP A 739' AC2 Software A MG 297 ? 6 'BINDING SITE FOR RESIDUE MG A 297' AC3 Software A MG 298 ? 5 'BINDING SITE FOR RESIDUE MG A 298' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 MG E . ? MG A 297 . ? 1_555 ? 2 AC1 21 MG F . ? MG A 298 . ? 1_555 ? 3 AC1 21 ARG A 20 ? ARG A 324 . ? 1_555 ? 4 AC1 21 LEU A 24 ? LEU A 328 . ? 1_555 ? 5 AC1 21 ASP A 58 ? ASP A 362 . ? 1_555 ? 6 AC1 21 PHE A 59 ? PHE A 363 . ? 1_555 ? 7 AC1 21 ASP A 60 ? ASP A 364 . ? 1_555 ? 8 AC1 21 CYS A 61 ? CYS A 365 . ? 1_555 ? 9 AC1 21 PHE A 62 ? PHE A 366 . ? 1_555 ? 10 AC1 21 PHE A 63 ? PHE A 367 . ? 1_555 ? 11 AC1 21 ALA A 97 ? ALA A 401 . ? 1_555 ? 12 AC1 21 SER A 98 ? SER A 402 . ? 1_555 ? 13 AC1 21 TYR A 101 ? TYR A 405 . ? 1_555 ? 14 AC1 21 ARG A 104 ? ARG A 408 . ? 1_555 ? 15 AC1 21 ASN A 110 ? ASN A 414 . ? 1_555 ? 16 AC1 21 ASP A 163 ? ASP A 467 . ? 1_555 ? 17 AC1 21 LYS A 221 ? LYS A 525 . ? 1_555 ? 18 AC1 21 HOH G . ? HOH A 748 . ? 1_555 ? 19 AC1 21 HOH G . ? HOH A 753 . ? 1_555 ? 20 AC1 21 HOH G . ? HOH A 791 . ? 1_555 ? 21 AC1 21 HOH G . ? HOH A 850 . ? 1_555 ? 22 AC2 6 MG F . ? MG A 298 . ? 1_555 ? 23 AC2 6 ASP A 58 ? ASP A 362 . ? 1_555 ? 24 AC2 6 ASP A 163 ? ASP A 467 . ? 1_555 ? 25 AC2 6 GLU A 164 ? GLU A 468 . ? 1_555 ? 26 AC2 6 DCP D . ? DCP A 739 . ? 1_555 ? 27 AC2 6 DOC C 12 ? DOC P 12 . ? 1_555 ? 28 AC3 5 MG E . ? MG A 297 . ? 1_555 ? 29 AC3 5 ASP A 58 ? ASP A 362 . ? 1_555 ? 30 AC3 5 PHE A 59 ? PHE A 363 . ? 1_555 ? 31 AC3 5 ASP A 163 ? ASP A 467 . ? 1_555 ? 32 AC3 5 DCP D . ? DCP A 739 . ? 1_555 ? # _database_PDB_matrix.entry_id 3BJY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3BJY _atom_sites.fract_transf_matrix[1][1] 0.005523 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005011 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017961 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 305 305 LYS LYS A . n A 1 2 ARG 2 306 306 ARG ARG A . n A 1 3 ILE 3 307 307 ILE ILE A . n A 1 4 VAL 4 308 308 VAL VAL A . n A 1 5 ALA 5 309 309 ALA ALA A . n A 1 6 CYS 6 310 310 CYS CYS A . n A 1 7 ASP 7 311 311 ASP ASP A . n A 1 8 ASP 8 312 312 ASP ASP A . n A 1 9 PRO 9 313 313 PRO PRO A . n A 1 10 ASP 10 314 314 ASP ASP A . n A 1 11 PHE 11 315 315 PHE PHE A . n A 1 12 LEU 12 316 316 LEU LEU A . n A 1 13 THR 13 317 317 THR THR A . n A 1 14 SER 14 318 318 SER SER A . n A 1 15 TYR 15 319 319 TYR TYR A . n A 1 16 PHE 16 320 320 PHE PHE A . n A 1 17 ALA 17 321 321 ALA ALA A . n A 1 18 HIS 18 322 322 HIS HIS A . n A 1 19 SER 19 323 323 SER SER A . n A 1 20 ARG 20 324 324 ARG ARG A . n A 1 21 LEU 21 325 325 LEU LEU A . n A 1 22 HIS 22 326 326 HIS HIS A . n A 1 23 HIS 23 327 327 HIS HIS A . n A 1 24 LEU 24 328 328 LEU LEU A . n A 1 25 SER 25 329 329 SER SER A . n A 1 26 ALA 26 330 330 ALA ALA A . n A 1 27 TRP 27 331 331 TRP TRP A . n A 1 28 LYS 28 332 332 LYS LYS A . n A 1 29 ALA 29 333 333 ALA ALA A . n A 1 30 ASN 30 334 334 ASN ASN A . n A 1 31 LEU 31 335 335 LEU LEU A . n A 1 32 LYS 32 336 336 LYS LYS A . n A 1 33 ASP 33 337 337 ASP ASP A . n A 1 34 LYS 34 338 338 LYS LYS A . n A 1 35 PHE 35 339 339 PHE PHE A . n A 1 36 LEU 36 340 340 LEU LEU A . n A 1 37 ASN 37 341 341 ASN ASN A . n A 1 38 GLU 38 342 342 GLU GLU A . n A 1 39 ASN 39 343 343 ASN ASN A . n A 1 40 ILE 40 344 344 ILE ILE A . n A 1 41 HIS 41 345 345 HIS HIS A . n A 1 42 LYS 42 346 346 LYS LYS A . n A 1 43 TYR 43 347 347 TYR TYR A . n A 1 44 THR 44 348 348 THR THR A . n A 1 45 LYS 45 349 349 LYS LYS A . n A 1 46 ILE 46 350 350 ILE ILE A . n A 1 47 THR 47 351 351 THR THR A . n A 1 48 ASP 48 352 352 ASP ASP A . n A 1 49 LYS 49 353 353 LYS LYS A . n A 1 50 ASP 50 354 354 ASP ASP A . n A 1 51 THR 51 355 355 THR THR A . n A 1 52 TYR 52 356 356 TYR TYR A . n A 1 53 ILE 53 357 357 ILE ILE A . n A 1 54 ILE 54 358 358 ILE ILE A . n A 1 55 PHE 55 359 359 PHE PHE A . n A 1 56 HIS 56 360 360 HIS HIS A . n A 1 57 ILE 57 361 361 ILE ILE A . n A 1 58 ASP 58 362 362 ASP ASP A . n A 1 59 PHE 59 363 363 PHE PHE A . n A 1 60 ASP 60 364 364 ASP ASP A . n A 1 61 CYS 61 365 365 CYS CYS A . n A 1 62 PHE 62 366 366 PHE PHE A . n A 1 63 PHE 63 367 367 PHE PHE A . n A 1 64 ALA 64 368 368 ALA ALA A . n A 1 65 THR 65 369 369 THR THR A . n A 1 66 VAL 66 370 370 VAL VAL A . n A 1 67 ALA 67 371 371 ALA ALA A . n A 1 68 TYR 68 372 372 TYR TYR A . n A 1 69 LEU 69 373 373 LEU LEU A . n A 1 70 CYS 70 374 374 CYS CYS A . n A 1 71 ARG 71 375 375 ARG ARG A . n A 1 72 SER 72 376 376 SER SER A . n A 1 73 SER 73 377 377 SER SER A . n A 1 74 SER 74 378 378 SER SER A . n A 1 75 PHE 75 379 379 PHE PHE A . n A 1 76 SER 76 380 380 SER SER A . n A 1 77 ALA 77 381 381 ALA ALA A . n A 1 78 CYS 78 382 382 CYS CYS A . n A 1 79 ASP 79 383 383 ASP ASP A . n A 1 80 PHE 80 384 384 PHE PHE A . n A 1 81 LYS 81 385 385 LYS LYS A . n A 1 82 ARG 82 386 386 ARG ARG A . n A 1 83 ASP 83 387 387 ASP ASP A . n A 1 84 PRO 84 388 388 PRO PRO A . n A 1 85 ILE 85 389 389 ILE ILE A . n A 1 86 VAL 86 390 390 VAL VAL A . n A 1 87 VAL 87 391 391 VAL VAL A . n A 1 88 CYS 88 392 392 CYS CYS A . n A 1 89 HIS 89 393 393 HIS HIS A . n A 1 90 GLY 90 394 394 GLY GLY A . n A 1 91 THR 91 395 395 THR THR A . n A 1 92 LYS 92 396 396 LYS LYS A . n A 1 93 ASN 93 397 397 ASN ASN A . n A 1 94 SER 94 398 398 SER SER A . n A 1 95 ASP 95 399 399 ASP ASP A . n A 1 96 ILE 96 400 400 ILE ILE A . n A 1 97 ALA 97 401 401 ALA ALA A . n A 1 98 SER 98 402 402 SER SER A . n A 1 99 CYS 99 403 403 CYS CYS A . n A 1 100 ASN 100 404 404 ASN ASN A . n A 1 101 TYR 101 405 405 TYR TYR A . n A 1 102 VAL 102 406 406 VAL VAL A . n A 1 103 ALA 103 407 407 ALA ALA A . n A 1 104 ARG 104 408 408 ARG ARG A . n A 1 105 SER 105 409 409 SER SER A . n A 1 106 TYR 106 410 410 TYR TYR A . n A 1 107 GLY 107 411 411 GLY GLY A . n A 1 108 ILE 108 412 412 ILE ILE A . n A 1 109 LYS 109 413 413 LYS LYS A . n A 1 110 ASN 110 414 414 ASN ASN A . n A 1 111 GLY 111 415 415 GLY GLY A . n A 1 112 MET 112 416 416 MET MET A . n A 1 113 TRP 113 417 417 TRP TRP A . n A 1 114 VAL 114 418 418 VAL VAL A . n A 1 115 SER 115 419 419 SER SER A . n A 1 116 GLN 116 420 420 GLN GLN A . n A 1 117 ALA 117 421 421 ALA ALA A . n A 1 118 GLU 118 422 422 GLU GLU A . n A 1 119 LYS 119 423 423 LYS LYS A . n A 1 120 MET 120 424 424 MET MET A . n A 1 121 LEU 121 425 425 LEU LEU A . n A 1 122 PRO 122 426 426 PRO PRO A . n A 1 123 ASN 123 427 427 ASN ASN A . n A 1 124 GLY 124 428 428 GLY GLY A . n A 1 125 ILE 125 429 429 ILE ILE A . n A 1 126 LYS 126 430 430 LYS LYS A . n A 1 127 LEU 127 431 431 LEU LEU A . n A 1 128 ILE 128 432 432 ILE ILE A . n A 1 129 SER 129 433 433 SER SER A . n A 1 130 LEU 130 434 434 LEU LEU A . n A 1 131 PRO 131 435 435 PRO PRO A . n A 1 132 TYR 132 436 436 TYR TYR A . n A 1 133 THR 133 437 437 THR THR A . n A 1 134 PHE 134 438 438 PHE PHE A . n A 1 135 GLU 135 439 439 GLU GLU A . n A 1 136 GLN 136 440 440 GLN GLN A . n A 1 137 PHE 137 441 441 PHE PHE A . n A 1 138 GLN 138 442 442 GLN GLN A . n A 1 139 LEU 139 443 443 LEU LEU A . n A 1 140 LYS 140 444 444 LYS LYS A . n A 1 141 SER 141 445 445 SER SER A . n A 1 142 GLU 142 446 446 GLU GLU A . n A 1 143 ALA 143 447 447 ALA ALA A . n A 1 144 PHE 144 448 448 PHE PHE A . n A 1 145 TYR 145 449 449 TYR TYR A . n A 1 146 SER 146 450 450 SER SER A . n A 1 147 THR 147 451 451 THR THR A . n A 1 148 LEU 148 452 452 LEU LEU A . n A 1 149 LYS 149 453 453 LYS LYS A . n A 1 150 ARG 150 454 454 ARG ARG A . n A 1 151 LEU 151 455 455 LEU LEU A . n A 1 152 ASN 152 456 456 ASN ASN A . n A 1 153 ILE 153 457 457 ILE ILE A . n A 1 154 PHE 154 458 458 PHE PHE A . n A 1 155 ASN 155 459 459 ASN ASN A . n A 1 156 LEU 156 460 460 LEU LEU A . n A 1 157 ILE 157 461 461 ILE ILE A . n A 1 158 LEU 158 462 462 LEU LEU A . n A 1 159 PRO 159 463 463 PRO PRO A . n A 1 160 ILE 160 464 464 ILE ILE A . n A 1 161 SER 161 465 465 SER SER A . n A 1 162 ILE 162 466 466 ILE ILE A . n A 1 163 ASP 163 467 467 ASP ASP A . n A 1 164 GLU 164 468 468 GLU GLU A . n A 1 165 ALA 165 469 469 ALA ALA A . n A 1 166 VAL 166 470 470 VAL VAL A . n A 1 167 CYS 167 471 471 CYS CYS A . n A 1 168 VAL 168 472 472 VAL VAL A . n A 1 169 ARG 169 473 473 ARG ARG A . n A 1 170 ILE 170 474 474 ILE ILE A . n A 1 171 ILE 171 475 475 ILE ILE A . n A 1 172 PRO 172 476 476 PRO PRO A . n A 1 173 ASP 173 477 477 ASP ASP A . n A 1 174 ASN 174 478 ? ? ? A . n A 1 175 ILE 175 479 ? ? ? A . n A 1 176 HIS 176 480 ? ? ? A . n A 1 177 ASN 177 481 ? ? ? A . n A 1 178 THR 178 482 ? ? ? A . n A 1 179 ASN 179 483 ? ? ? A . n A 1 180 THR 180 484 484 THR THR A . n A 1 181 LEU 181 485 485 LEU LEU A . n A 1 182 ASN 182 486 486 ASN ASN A . n A 1 183 ALA 183 487 487 ALA ALA A . n A 1 184 ARG 184 488 488 ARG ARG A . n A 1 185 LEU 185 489 489 LEU LEU A . n A 1 186 CYS 186 490 490 CYS CYS A . n A 1 187 GLU 187 491 491 GLU GLU A . n A 1 188 GLU 188 492 492 GLU GLU A . n A 1 189 ILE 189 493 493 ILE ILE A . n A 1 190 ARG 190 494 494 ARG ARG A . n A 1 191 GLN 191 495 495 GLN GLN A . n A 1 192 GLU 192 496 496 GLU GLU A . n A 1 193 ILE 193 497 497 ILE ILE A . n A 1 194 PHE 194 498 498 PHE PHE A . n A 1 195 GLN 195 499 499 GLN GLN A . n A 1 196 GLY 196 500 500 GLY GLY A . n A 1 197 THR 197 501 501 THR THR A . n A 1 198 ASN 198 502 502 ASN ASN A . n A 1 199 GLY 199 503 503 GLY GLY A . n A 1 200 CYS 200 504 504 CYS CYS A . n A 1 201 THR 201 505 505 THR THR A . n A 1 202 VAL 202 506 506 VAL VAL A . n A 1 203 SER 203 507 507 SER SER A . n A 1 204 ILE 204 508 508 ILE ILE A . n A 1 205 GLY 205 509 509 GLY GLY A . n A 1 206 CYS 206 510 510 CYS CYS A . n A 1 207 SER 207 511 511 SER SER A . n A 1 208 ASP 208 512 512 ASP ASP A . n A 1 209 SER 209 513 513 SER SER A . n A 1 210 LEU 210 514 514 LEU LEU A . n A 1 211 VAL 211 515 515 VAL VAL A . n A 1 212 LEU 212 516 516 LEU LEU A . n A 1 213 ALA 213 517 517 ALA ALA A . n A 1 214 ARG 214 518 518 ARG ARG A . n A 1 215 LEU 215 519 519 LEU LEU A . n A 1 216 ALA 216 520 520 ALA ALA A . n A 1 217 LEU 217 521 521 LEU LEU A . n A 1 218 LYS 218 522 522 LYS LYS A . n A 1 219 MET 219 523 523 MET MET A . n A 1 220 ALA 220 524 524 ALA ALA A . n A 1 221 LYS 221 525 525 LYS LYS A . n A 1 222 PRO 222 526 526 PRO PRO A . n A 1 223 ASN 223 527 527 ASN ASN A . n A 1 224 GLY 224 528 528 GLY GLY A . n A 1 225 TYR 225 529 529 TYR TYR A . n A 1 226 ASN 226 530 530 ASN ASN A . n A 1 227 ILE 227 531 531 ILE ILE A . n A 1 228 THR 228 532 532 THR THR A . n A 1 229 PHE 229 533 533 PHE PHE A . n A 1 230 LYS 230 534 534 LYS LYS A . n A 1 231 SER 231 535 535 SER SER A . n A 1 232 ASN 232 536 536 ASN ASN A . n A 1 233 LEU 233 537 537 LEU LEU A . n A 1 234 SER 234 538 538 SER SER A . n A 1 235 GLU 235 539 539 GLU GLU A . n A 1 236 GLU 236 540 540 GLU GLU A . n A 1 237 PHE 237 541 541 PHE PHE A . n A 1 238 TRP 238 542 542 TRP TRP A . n A 1 239 SER 239 543 543 SER SER A . n A 1 240 SER 240 544 544 SER SER A . n A 1 241 PHE 241 545 545 PHE PHE A . n A 1 242 LYS 242 546 546 LYS LYS A . n A 1 243 LEU 243 547 547 LEU LEU A . n A 1 244 ASP 244 548 548 ASP ASP A . n A 1 245 ASP 245 549 549 ASP ASP A . n A 1 246 LEU 246 550 550 LEU LEU A . n A 1 247 PRO 247 551 551 PRO PRO A . n A 1 248 GLY 248 552 552 GLY GLY A . n A 1 249 VAL 249 553 553 VAL VAL A . n A 1 250 GLY 250 554 554 GLY GLY A . n A 1 251 HIS 251 555 555 HIS HIS A . n A 1 252 SER 252 556 556 SER SER A . n A 1 253 THR 253 557 557 THR THR A . n A 1 254 LEU 254 558 558 LEU LEU A . n A 1 255 SER 255 559 559 SER SER A . n A 1 256 ARG 256 560 560 ARG ARG A . n A 1 257 LEU 257 561 561 LEU LEU A . n A 1 258 GLU 258 562 562 GLU GLU A . n A 1 259 SER 259 563 563 SER SER A . n A 1 260 THR 260 564 564 THR THR A . n A 1 261 PHE 261 565 565 PHE PHE A . n A 1 262 ASP 262 566 566 ASP ASP A . n A 1 263 SER 263 567 567 SER SER A . n A 1 264 PRO 264 568 568 PRO PRO A . n A 1 265 HIS 265 569 569 HIS HIS A . n A 1 266 SER 266 570 570 SER SER A . n A 1 267 LEU 267 571 571 LEU LEU A . n A 1 268 ASN 268 572 572 ASN ASN A . n A 1 269 ASP 269 573 573 ASP ASP A . n A 1 270 LEU 270 574 574 LEU LEU A . n A 1 271 ARG 271 575 575 ARG ARG A . n A 1 272 LYS 272 576 576 LYS LYS A . n A 1 273 ARG 273 577 577 ARG ARG A . n A 1 274 TYR 274 578 578 TYR TYR A . n A 1 275 THR 275 579 579 THR THR A . n A 1 276 LEU 276 580 580 LEU LEU A . n A 1 277 ASP 277 581 581 ASP ASP A . n A 1 278 ALA 278 582 582 ALA ALA A . n A 1 279 LEU 279 583 583 LEU LEU A . n A 1 280 LYS 280 584 584 LYS LYS A . n A 1 281 ALA 281 585 585 ALA ALA A . n A 1 282 SER 282 586 586 SER SER A . n A 1 283 VAL 283 587 587 VAL VAL A . n A 1 284 GLY 284 588 588 GLY GLY A . n A 1 285 SER 285 589 589 SER SER A . n A 1 286 LYS 286 590 590 LYS LYS A . n A 1 287 LEU 287 591 591 LEU LEU A . n A 1 288 GLY 288 592 592 GLY GLY A . n A 1 289 MET 289 593 593 MET MET A . n A 1 290 LYS 290 594 594 LYS LYS A . n A 1 291 ILE 291 595 595 ILE ILE A . n A 1 292 HIS 292 596 596 HIS HIS A . n A 1 293 LEU 293 597 597 LEU LEU A . n A 1 294 ALA 294 598 598 ALA ALA A . n A 1 295 LEU 295 599 599 LEU LEU A . n A 1 296 GLN 296 600 600 GLN GLN A . n A 1 297 GLY 297 601 601 GLY GLY A . n A 1 298 GLN 298 602 602 GLN GLN A . n A 1 299 ASP 299 603 603 ASP ASP A . n A 1 300 ASP 300 604 604 ASP ASP A . n A 1 301 GLU 301 605 605 GLU GLU A . n A 1 302 GLU 302 606 606 GLU GLU A . n A 1 303 SER 303 607 607 SER SER A . n A 1 304 LEU 304 608 608 LEU LEU A . n A 1 305 LYS 305 609 609 LYS LYS A . n A 1 306 ILE 306 610 610 ILE ILE A . n A 1 307 LEU 307 611 611 LEU LEU A . n A 1 308 TYR 308 612 612 TYR TYR A . n A 1 309 ASP 309 613 613 ASP ASP A . n A 1 310 PRO 310 614 614 PRO PRO A . n A 1 311 LYS 311 615 615 LYS LYS A . n A 1 312 GLU 312 616 616 GLU GLU A . n A 1 313 VAL 313 617 617 VAL VAL A . n A 1 314 LEU 314 618 618 LEU LEU A . n A 1 315 GLN 315 619 619 GLN GLN A . n A 1 316 ARG 316 620 620 ARG ARG A . n A 1 317 LYS 317 621 621 LYS LYS A . n A 1 318 SER 318 622 622 SER SER A . n A 1 319 LEU 319 623 623 LEU LEU A . n A 1 320 SER 320 624 624 SER SER A . n A 1 321 ILE 321 625 625 ILE ILE A . n A 1 322 ASP 322 626 626 ASP ASP A . n A 1 323 ILE 323 627 627 ILE ILE A . n A 1 324 ASN 324 628 628 ASN ASN A . n A 1 325 TRP 325 629 629 TRP TRP A . n A 1 326 GLY 326 630 630 GLY GLY A . n A 1 327 ILE 327 631 631 ILE ILE A . n A 1 328 ARG 328 632 632 ARG ARG A . n A 1 329 PHE 329 633 633 PHE PHE A . n A 1 330 LYS 330 634 634 LYS LYS A . n A 1 331 ASN 331 635 635 ASN ASN A . n A 1 332 ILE 332 636 636 ILE ILE A . n A 1 333 THR 333 637 637 THR THR A . n A 1 334 GLN 334 638 638 GLN GLN A . n A 1 335 VAL 335 639 639 VAL VAL A . n A 1 336 ASP 336 640 640 ASP ASP A . n A 1 337 LEU 337 641 641 LEU LEU A . n A 1 338 PHE 338 642 642 PHE PHE A . n A 1 339 ILE 339 643 643 ILE ILE A . n A 1 340 GLU 340 644 644 GLU GLU A . n A 1 341 ARG 341 645 645 ARG ARG A . n A 1 342 GLY 342 646 646 GLY GLY A . n A 1 343 CYS 343 647 647 CYS CYS A . n A 1 344 GLN 344 648 648 GLN GLN A . n A 1 345 TYR 345 649 649 TYR TYR A . n A 1 346 LEU 346 650 650 LEU LEU A . n A 1 347 LEU 347 651 651 LEU LEU A . n A 1 348 GLU 348 652 652 GLU GLU A . n A 1 349 LYS 349 653 653 LYS LYS A . n A 1 350 LEU 350 654 654 LEU LEU A . n A 1 351 ASN 351 655 655 ASN ASN A . n A 1 352 GLU 352 656 656 GLU GLU A . n A 1 353 ILE 353 657 657 ILE ILE A . n A 1 354 ASN 354 658 658 ASN ASN A . n A 1 355 LYS 355 659 659 LYS LYS A . n A 1 356 THR 356 660 660 THR THR A . n A 1 357 THR 357 661 661 THR THR A . n A 1 358 SER 358 662 662 SER SER A . n A 1 359 GLN 359 663 663 GLN GLN A . n A 1 360 ILE 360 664 664 ILE ILE A . n A 1 361 THR 361 665 665 THR THR A . n A 1 362 LEU 362 666 666 LEU LEU A . n A 1 363 LYS 363 667 667 LYS LYS A . n A 1 364 LEU 364 668 668 LEU LEU A . n A 1 365 MET 365 669 669 MET MET A . n A 1 366 ARG 366 670 670 ARG ARG A . n A 1 367 ARG 367 671 671 ARG ARG A . n A 1 368 CYS 368 672 672 CYS CYS A . n A 1 369 LYS 369 673 673 LYS LYS A . n A 1 370 ASP 370 674 674 ASP ASP A . n A 1 371 ALA 371 675 675 ALA ALA A . n A 1 372 PRO 372 676 676 PRO PRO A . n A 1 373 ILE 373 677 677 ILE ILE A . n A 1 374 GLU 374 678 678 GLU GLU A . n A 1 375 PRO 375 679 679 PRO PRO A . n A 1 376 PRO 376 680 680 PRO PRO A . n A 1 377 LYS 377 681 681 LYS LYS A . n A 1 378 TYR 378 682 682 TYR TYR A . n A 1 379 MET 379 683 683 MET MET A . n A 1 380 GLY 380 684 684 GLY GLY A . n A 1 381 MET 381 685 685 MET MET A . n A 1 382 GLY 382 686 686 GLY GLY A . n A 1 383 ARG 383 687 687 ARG ARG A . n A 1 384 CYS 384 688 688 CYS CYS A . n A 1 385 ASP 385 689 689 ASP ASP A . n A 1 386 SER 386 690 690 SER SER A . n A 1 387 PHE 387 691 691 PHE PHE A . n A 1 388 SER 388 692 692 SER SER A . n A 1 389 ARG 389 693 693 ARG ARG A . n A 1 390 SER 390 694 694 SER SER A . n A 1 391 SER 391 695 695 SER SER A . n A 1 392 ARG 392 696 696 ARG ARG A . n A 1 393 LEU 393 697 697 LEU LEU A . n A 1 394 GLY 394 698 698 GLY GLY A . n A 1 395 ILE 395 699 699 ILE ILE A . n A 1 396 PRO 396 700 700 PRO PRO A . n A 1 397 THR 397 701 701 THR THR A . n A 1 398 ASN 398 702 702 ASN ASN A . n A 1 399 GLU 399 703 703 GLU GLU A . n A 1 400 PHE 400 704 704 PHE PHE A . n A 1 401 GLY 401 705 705 GLY GLY A . n A 1 402 ILE 402 706 706 ILE ILE A . n A 1 403 ILE 403 707 707 ILE ILE A . n A 1 404 ALA 404 708 708 ALA ALA A . n A 1 405 THR 405 709 709 THR THR A . n A 1 406 GLU 406 710 710 GLU GLU A . n A 1 407 MET 407 711 711 MET MET A . n A 1 408 LYS 408 712 712 LYS LYS A . n A 1 409 SER 409 713 713 SER SER A . n A 1 410 LEU 410 714 714 LEU LEU A . n A 1 411 TYR 411 715 715 TYR TYR A . n A 1 412 ARG 412 716 716 ARG ARG A . n A 1 413 THR 413 717 717 THR THR A . n A 1 414 LEU 414 718 718 LEU LEU A . n A 1 415 GLY 415 719 719 GLY GLY A . n A 1 416 CYS 416 720 720 CYS CYS A . n A 1 417 PRO 417 721 721 PRO PRO A . n A 1 418 PRO 418 722 722 PRO PRO A . n A 1 419 MET 419 723 723 MET MET A . n A 1 420 GLU 420 724 724 GLU GLU A . n A 1 421 LEU 421 725 725 LEU LEU A . n A 1 422 ARG 422 726 726 ARG ARG A . n A 1 423 GLY 423 727 727 GLY GLY A . n A 1 424 LEU 424 728 728 LEU LEU A . n A 1 425 ALA 425 729 729 ALA ALA A . n A 1 426 LEU 426 730 730 LEU LEU A . n A 1 427 GLN 427 731 731 GLN GLN A . n A 1 428 PHE 428 732 732 PHE PHE A . n A 1 429 ASN 429 733 733 ASN ASN A . n A 1 430 LYS 430 734 734 LYS LYS A . n A 1 431 LEU 431 735 735 LEU LEU A . n A 1 432 VAL 432 736 736 VAL VAL A . n A 1 433 ASP 433 737 737 ASP ASP A . n A 1 434 VAL 434 738 738 VAL VAL A . n B 2 1 DT 1 1 1 DT DT T . n B 2 2 DA 2 2 2 DA DA T . n B 2 3 DA 3 3 3 DA DA T . n B 2 4 P 4 4 4 P P T . n B 2 5 DG 5 5 5 DG DG T . n B 2 6 DT 6 6 6 DT DT T . n B 2 7 DA 7 7 7 DA DA T . n B 2 8 DG 8 8 8 DG DG T . n B 2 9 DG 9 9 9 DG DG T . n B 2 10 DG 10 10 10 DG DG T . n B 2 11 DG 11 11 11 DG DG T . n B 2 12 DA 12 12 12 DA DA T . n B 2 13 DG 13 13 13 DG DG T . n B 2 14 DG 14 14 14 DG DG T . n B 2 15 DA 15 15 15 DA DA T . n B 2 16 DT 16 16 16 DT DT T . n C 3 1 DA 1 1 1 DA DA P . n C 3 2 DT 2 2 2 DT DT P . n C 3 3 DC 3 3 3 DC DC P . n C 3 4 DC 4 4 4 DC DC P . n C 3 5 DT 5 5 5 DT DT P . n C 3 6 DC 6 6 6 DC DC P . n C 3 7 DC 7 7 7 DC DC P . n C 3 8 DC 8 8 8 DC DC P . n C 3 9 DC 9 9 9 DC DC P . n C 3 10 DT 10 10 10 DT DT P . n C 3 11 DA 11 11 11 DA DA P . n C 3 12 DOC 12 12 12 DOC DOC P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DCP 1 739 739 DCP DCP A . E 5 MG 1 297 297 MG MG A . F 5 MG 1 298 298 MG MG A . G 6 HOH 1 740 740 HOH HOH A . G 6 HOH 2 741 741 HOH HOH A . G 6 HOH 3 742 742 HOH HOH A . G 6 HOH 4 743 743 HOH HOH A . G 6 HOH 5 744 744 HOH HOH A . G 6 HOH 6 745 745 HOH HOH A . G 6 HOH 7 746 746 HOH HOH A . G 6 HOH 8 747 747 HOH HOH A . G 6 HOH 9 748 748 HOH HOH A . G 6 HOH 10 749 749 HOH HOH A . G 6 HOH 11 750 750 HOH HOH A . G 6 HOH 12 751 751 HOH HOH A . G 6 HOH 13 752 752 HOH HOH A . G 6 HOH 14 753 753 HOH HOH A . G 6 HOH 15 754 754 HOH HOH A . G 6 HOH 16 755 755 HOH HOH A . G 6 HOH 17 756 756 HOH HOH A . G 6 HOH 18 757 757 HOH HOH A . G 6 HOH 19 758 758 HOH HOH A . G 6 HOH 20 759 759 HOH HOH A . G 6 HOH 21 760 760 HOH HOH A . G 6 HOH 22 761 761 HOH HOH A . G 6 HOH 23 762 762 HOH HOH A . G 6 HOH 24 763 763 HOH HOH A . G 6 HOH 25 764 764 HOH HOH A . G 6 HOH 26 765 765 HOH HOH A . G 6 HOH 27 766 766 HOH HOH A . G 6 HOH 28 767 767 HOH HOH A . G 6 HOH 29 768 768 HOH HOH A . G 6 HOH 30 769 769 HOH HOH A . G 6 HOH 31 770 770 HOH HOH A . G 6 HOH 32 771 771 HOH HOH A . G 6 HOH 33 772 772 HOH HOH A . G 6 HOH 34 773 773 HOH HOH A . G 6 HOH 35 774 774 HOH HOH A . G 6 HOH 36 775 775 HOH HOH A . G 6 HOH 37 776 776 HOH HOH A . G 6 HOH 38 777 777 HOH HOH A . G 6 HOH 39 778 778 HOH HOH A . G 6 HOH 40 779 779 HOH HOH A . G 6 HOH 41 780 780 HOH HOH A . G 6 HOH 42 781 781 HOH HOH A . G 6 HOH 43 782 782 HOH HOH A . G 6 HOH 44 783 783 HOH HOH A . G 6 HOH 45 784 784 HOH HOH A . G 6 HOH 46 785 785 HOH HOH A . G 6 HOH 47 786 786 HOH HOH A . G 6 HOH 48 787 787 HOH HOH A . G 6 HOH 49 788 788 HOH HOH A . G 6 HOH 50 789 789 HOH HOH A . G 6 HOH 51 790 790 HOH HOH A . G 6 HOH 52 791 791 HOH HOH A . G 6 HOH 53 792 792 HOH HOH A . G 6 HOH 54 793 793 HOH HOH A . G 6 HOH 55 794 794 HOH HOH A . G 6 HOH 56 795 795 HOH HOH A . G 6 HOH 57 796 796 HOH HOH A . G 6 HOH 58 797 797 HOH HOH A . G 6 HOH 59 798 798 HOH HOH A . G 6 HOH 60 799 799 HOH HOH A . G 6 HOH 61 800 800 HOH HOH A . G 6 HOH 62 801 801 HOH HOH A . G 6 HOH 63 802 802 HOH HOH A . G 6 HOH 64 803 803 HOH HOH A . G 6 HOH 65 804 804 HOH HOH A . G 6 HOH 66 805 805 HOH HOH A . G 6 HOH 67 806 806 HOH HOH A . G 6 HOH 68 807 807 HOH HOH A . G 6 HOH 69 808 808 HOH HOH A . G 6 HOH 70 809 809 HOH HOH A . G 6 HOH 71 810 810 HOH HOH A . G 6 HOH 72 811 811 HOH HOH A . G 6 HOH 73 812 812 HOH HOH A . G 6 HOH 74 813 813 HOH HOH A . G 6 HOH 75 814 814 HOH HOH A . G 6 HOH 76 815 815 HOH HOH A . G 6 HOH 77 816 816 HOH HOH A . G 6 HOH 78 817 817 HOH HOH A . G 6 HOH 79 818 818 HOH HOH A . G 6 HOH 80 819 819 HOH HOH A . G 6 HOH 81 820 820 HOH HOH A . G 6 HOH 82 821 821 HOH HOH A . G 6 HOH 83 822 822 HOH HOH A . G 6 HOH 84 823 823 HOH HOH A . G 6 HOH 85 824 824 HOH HOH A . G 6 HOH 86 825 825 HOH HOH A . G 6 HOH 87 826 826 HOH HOH A . G 6 HOH 88 827 827 HOH HOH A . G 6 HOH 89 828 828 HOH HOH A . G 6 HOH 90 829 829 HOH HOH A . G 6 HOH 91 830 830 HOH HOH A . G 6 HOH 92 831 831 HOH HOH A . G 6 HOH 93 832 832 HOH HOH A . G 6 HOH 94 833 833 HOH HOH A . G 6 HOH 95 834 834 HOH HOH A . G 6 HOH 96 835 835 HOH HOH A . G 6 HOH 97 836 836 HOH HOH A . G 6 HOH 98 837 837 HOH HOH A . G 6 HOH 99 838 838 HOH HOH A . G 6 HOH 100 839 839 HOH HOH A . G 6 HOH 101 840 840 HOH HOH A . G 6 HOH 102 841 841 HOH HOH A . G 6 HOH 103 842 842 HOH HOH A . G 6 HOH 104 843 843 HOH HOH A . G 6 HOH 105 844 844 HOH HOH A . G 6 HOH 106 845 845 HOH HOH A . G 6 HOH 107 846 846 HOH HOH A . G 6 HOH 108 847 847 HOH HOH A . G 6 HOH 109 848 848 HOH HOH A . G 6 HOH 110 849 849 HOH HOH A . G 6 HOH 111 850 850 HOH HOH A . G 6 HOH 112 851 851 HOH HOH A . G 6 HOH 113 852 852 HOH HOH A . G 6 HOH 114 853 853 HOH HOH A . G 6 HOH 115 854 854 HOH HOH A . G 6 HOH 116 855 855 HOH HOH A . G 6 HOH 117 856 856 HOH HOH A . G 6 HOH 118 857 857 HOH HOH A . G 6 HOH 119 858 858 HOH HOH A . G 6 HOH 120 859 859 HOH HOH A . G 6 HOH 121 860 860 HOH HOH A . G 6 HOH 122 861 861 HOH HOH A . G 6 HOH 123 862 862 HOH HOH A . G 6 HOH 124 863 863 HOH HOH A . G 6 HOH 125 864 864 HOH HOH A . G 6 HOH 126 865 865 HOH HOH A . G 6 HOH 127 866 866 HOH HOH A . G 6 HOH 128 867 867 HOH HOH A . G 6 HOH 129 868 868 HOH HOH A . G 6 HOH 130 869 869 HOH HOH A . G 6 HOH 131 870 870 HOH HOH A . G 6 HOH 132 871 871 HOH HOH A . G 6 HOH 133 872 872 HOH HOH A . G 6 HOH 134 873 873 HOH HOH A . G 6 HOH 135 874 874 HOH HOH A . G 6 HOH 136 875 875 HOH HOH A . G 6 HOH 137 876 876 HOH HOH A . G 6 HOH 138 877 877 HOH HOH A . G 6 HOH 139 878 878 HOH HOH A . G 6 HOH 140 879 879 HOH HOH A . G 6 HOH 141 880 880 HOH HOH A . G 6 HOH 142 881 881 HOH HOH A . G 6 HOH 143 882 882 HOH HOH A . G 6 HOH 144 883 883 HOH HOH A . H 6 HOH 1 17 17 HOH HOH T . H 6 HOH 2 18 18 HOH HOH T . H 6 HOH 3 19 19 HOH HOH T . H 6 HOH 4 20 20 HOH HOH T . H 6 HOH 5 21 21 HOH HOH T . H 6 HOH 6 22 22 HOH HOH T . H 6 HOH 7 23 23 HOH HOH T . H 6 HOH 8 24 24 HOH HOH T . I 6 HOH 1 31 31 HOH HOH P . I 6 HOH 2 83 83 HOH HOH P . I 6 HOH 3 98 98 HOH HOH P . I 6 HOH 4 133 133 HOH HOH P . I 6 HOH 5 144 144 HOH HOH P . I 6 HOH 6 155 155 HOH HOH P . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B P 4 T P 4 ? DG ? 2 C DOC 12 P DOC 12 ? DC "2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6910 ? 1 MORE -48 ? 1 'SSA (A^2)' 22530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Polymer sequence' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' entity_poly 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 4 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AMoRE phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND2 A ASN 459 ? ? O A HOH 809 ? ? 2.03 2 1 OP2 P DOC 12 ? ? O P HOH 144 ? ? 2.11 3 1 OE1 A GLN 495 ? ? NE2 A GLN 499 ? ? 2.14 4 1 O A CYS 510 ? ? O A ILE 531 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A PHE 367 ? ? CG A PHE 367 ? ? CD2 A PHE 367 ? ? 115.45 120.80 -5.35 0.70 N 2 1 CB A PHE 367 ? ? CG A PHE 367 ? ? CD1 A PHE 367 ? ? 125.79 120.80 4.99 0.70 N 3 1 CA A LEU 460 ? ? CB A LEU 460 ? ? CG A LEU 460 ? ? 130.22 115.30 14.92 2.30 N 4 1 CA A PRO 526 ? ? N A PRO 526 ? ? CD A PRO 526 ? ? 103.24 111.70 -8.46 1.40 N 5 1 C A GLU 678 ? ? N A PRO 679 ? ? CA A PRO 679 ? ? 128.54 119.30 9.24 1.50 Y 6 1 C A GLU 678 ? ? N A PRO 679 ? ? CD A PRO 679 ? ? 113.64 128.40 -14.76 2.10 Y 7 1 N9 T DG 5 ? ? "C1'" T DG 5 ? ? "C2'" T DG 5 ? ? 123.89 114.30 9.59 1.40 N 8 1 "C5'" T DT 6 ? ? "C4'" T DT 6 ? ? "C3'" T DT 6 ? ? 98.10 114.10 -16.00 1.80 N 9 1 "O4'" T DT 6 ? ? "C1'" T DT 6 ? ? N1 T DT 6 ? ? 111.81 108.30 3.51 0.30 N 10 1 "C3'" T DG 8 ? ? "C2'" T DG 8 ? ? "C1'" T DG 8 ? ? 96.84 102.40 -5.56 0.80 N 11 1 N9 T DG 8 ? ? "C1'" T DG 8 ? ? "C2'" T DG 8 ? ? 126.25 114.30 11.95 1.40 N 12 1 "O4'" T DG 8 ? ? "C1'" T DG 8 ? ? N9 T DG 8 ? ? 113.71 108.30 5.41 0.30 N 13 1 "O4'" T DG 9 ? ? "C1'" T DG 9 ? ? N9 T DG 9 ? ? 111.05 108.30 2.75 0.30 N 14 1 C4 T DG 9 ? ? N9 T DG 9 ? ? "C1'" T DG 9 ? ? 134.60 126.50 8.10 1.30 N 15 1 "O4'" T DG 10 ? ? "C1'" T DG 10 ? ? N9 T DG 10 ? ? 111.96 108.30 3.66 0.30 N 16 1 N9 T DG 11 ? ? "C1'" T DG 11 ? ? "C2'" T DG 11 ? ? 123.45 114.30 9.15 1.40 N 17 1 "O4'" T DG 11 ? ? "C1'" T DG 11 ? ? N9 T DG 11 ? ? 110.59 108.30 2.29 0.30 N 18 1 N9 T DG 13 ? ? "C1'" T DG 13 ? ? "C2'" T DG 13 ? ? 124.65 114.30 10.35 1.40 N 19 1 "O4'" T DG 13 ? ? "C1'" T DG 13 ? ? N9 T DG 13 ? ? 112.47 108.30 4.17 0.30 N 20 1 N9 T DG 14 ? ? "C1'" T DG 14 ? ? "C2'" T DG 14 ? ? 125.17 114.30 10.87 1.40 N 21 1 "O4'" T DG 14 ? ? "C1'" T DG 14 ? ? N9 T DG 14 ? ? 110.97 108.30 2.67 0.30 N 22 1 "O4'" T DA 15 ? ? "C1'" T DA 15 ? ? N9 T DA 15 ? ? 110.53 108.30 2.23 0.30 N 23 1 "O4'" P DC 3 ? ? "C1'" P DC 3 ? ? N1 P DC 3 ? ? 110.19 108.30 1.89 0.30 N 24 1 "O4'" P DC 4 ? ? "C1'" P DC 4 ? ? N1 P DC 4 ? ? 110.24 108.30 1.94 0.30 N 25 1 "O4'" P DC 6 ? ? "C1'" P DC 6 ? ? N1 P DC 6 ? ? 110.38 108.30 2.08 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 306 ? ? 71.82 104.72 2 1 CYS A 365 ? ? 24.69 65.37 3 1 LYS A 396 ? ? -127.60 -88.41 4 1 ASN A 397 ? ? -96.52 50.52 5 1 ASN A 456 ? ? -113.18 68.55 6 1 ASN A 502 ? ? 81.33 -136.91 7 1 LYS A 525 ? ? -15.70 -65.64 8 1 PRO A 526 ? ? -58.03 85.04 9 1 ILE A 531 ? ? -93.08 -72.85 10 1 THR A 532 ? ? 52.53 93.35 11 1 SER A 567 ? ? 37.40 72.30 12 1 ASP A 613 ? ? -172.85 86.76 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA T 3 ? ? 0.076 'SIDE CHAIN' 2 1 DG T 5 ? ? 0.088 'SIDE CHAIN' 3 1 DG T 10 ? ? 0.054 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 305 ? CG ? A LYS 1 CG 2 1 Y 1 A LYS 305 ? CD ? A LYS 1 CD 3 1 Y 1 A LYS 305 ? CE ? A LYS 1 CE 4 1 Y 1 A LYS 305 ? NZ ? A LYS 1 NZ 5 1 Y 1 A TYR 347 ? CG ? A TYR 43 CG 6 1 Y 1 A TYR 347 ? CD1 ? A TYR 43 CD1 7 1 Y 1 A TYR 347 ? CD2 ? A TYR 43 CD2 8 1 Y 1 A TYR 347 ? CE1 ? A TYR 43 CE1 9 1 Y 1 A TYR 347 ? CE2 ? A TYR 43 CE2 10 1 Y 1 A TYR 347 ? CZ ? A TYR 43 CZ 11 1 Y 1 A TYR 347 ? OH ? A TYR 43 OH 12 1 Y 1 A LYS 353 ? CG ? A LYS 49 CG 13 1 Y 1 A LYS 353 ? CD ? A LYS 49 CD 14 1 Y 1 A LYS 353 ? CE ? A LYS 49 CE 15 1 Y 1 A LYS 353 ? NZ ? A LYS 49 NZ 16 1 Y 1 A ARG 386 ? CG ? A ARG 82 CG 17 1 Y 1 A ARG 386 ? CD ? A ARG 82 CD 18 1 Y 1 A ARG 386 ? NE ? A ARG 82 NE 19 1 Y 1 A ARG 386 ? CZ ? A ARG 82 CZ 20 1 Y 1 A ARG 386 ? NH1 ? A ARG 82 NH1 21 1 Y 1 A ARG 386 ? NH2 ? A ARG 82 NH2 22 1 Y 1 A LYS 430 ? CG ? A LYS 126 CG 23 1 Y 1 A LYS 430 ? CD ? A LYS 126 CD 24 1 Y 1 A LYS 430 ? CE ? A LYS 126 CE 25 1 Y 1 A LYS 430 ? NZ ? A LYS 126 NZ 26 1 Y 1 A GLU 439 ? CG ? A GLU 135 CG 27 1 Y 1 A GLU 439 ? CD ? A GLU 135 CD 28 1 Y 1 A GLU 439 ? OE1 ? A GLU 135 OE1 29 1 Y 1 A GLU 439 ? OE2 ? A GLU 135 OE2 30 1 Y 1 A LYS 453 ? CG ? A LYS 149 CG 31 1 Y 1 A LYS 453 ? CD ? A LYS 149 CD 32 1 Y 1 A LYS 453 ? CE ? A LYS 149 CE 33 1 Y 1 A LYS 453 ? NZ ? A LYS 149 NZ 34 1 Y 1 A GLU 540 ? CG ? A GLU 236 CG 35 1 Y 1 A GLU 540 ? CD ? A GLU 236 CD 36 1 Y 1 A GLU 540 ? OE1 ? A GLU 236 OE1 37 1 Y 1 A GLU 540 ? OE2 ? A GLU 236 OE2 38 1 Y 1 A GLU 616 ? CG ? A GLU 312 CG 39 1 Y 1 A GLU 616 ? CD ? A GLU 312 CD 40 1 Y 1 A GLU 616 ? OE1 ? A GLU 312 OE1 41 1 Y 1 A GLU 616 ? OE2 ? A GLU 312 OE2 42 1 Y 1 A LYS 653 ? CG ? A LYS 349 CG 43 1 Y 1 A LYS 653 ? CD ? A LYS 349 CD 44 1 Y 1 A LYS 653 ? CE ? A LYS 349 CE 45 1 Y 1 A LYS 653 ? NZ ? A LYS 349 NZ 46 1 Y 1 A LYS 673 ? CG ? A LYS 369 CG 47 1 Y 1 A LYS 673 ? CD ? A LYS 369 CD 48 1 Y 1 A LYS 673 ? CE ? A LYS 369 CE 49 1 Y 1 A LYS 673 ? NZ ? A LYS 369 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 478 ? A ASN 174 2 1 Y 1 A ILE 479 ? A ILE 175 3 1 Y 1 A HIS 480 ? A HIS 176 4 1 Y 1 A ASN 481 ? A ASN 177 5 1 Y 1 A THR 482 ? A THR 178 6 1 Y 1 A ASN 483 ? A ASN 179 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DCP N1 N N N 158 DCP C2 C N N 159 DCP N3 N N N 160 DCP C4 C N N 161 DCP C5 C N N 162 DCP C6 C N N 163 DCP O2 O N N 164 DCP N4 N N N 165 DCP "C1'" C N R 166 DCP "C2'" C N N 167 DCP "C3'" C N S 168 DCP "C4'" C N R 169 DCP "O4'" O N N 170 DCP "O3'" O N N 171 DCP "C5'" C N N 172 DCP "O5'" O N N 173 DCP PA P N R 174 DCP O1A O N N 175 DCP O2A O N N 176 DCP O3A O N N 177 DCP PB P N S 178 DCP O1B O N N 179 DCP O2B O N N 180 DCP O3B O N N 181 DCP PG P N N 182 DCP O1G O N N 183 DCP O2G O N N 184 DCP O3G O N N 185 DCP H5 H N N 186 DCP H6 H N N 187 DCP HN41 H N N 188 DCP HN42 H N N 189 DCP "H1'" H N N 190 DCP "H2'1" H N N 191 DCP "H2'2" H N N 192 DCP "H3'" H N N 193 DCP "H4'" H N N 194 DCP "HO3'" H N N 195 DCP "H5'1" H N N 196 DCP "H5'2" H N N 197 DCP HOA2 H N N 198 DCP HOB2 H N N 199 DCP HOG2 H N N 200 DCP HOG3 H N N 201 DG OP3 O N N 202 DG P P N N 203 DG OP1 O N N 204 DG OP2 O N N 205 DG "O5'" O N N 206 DG "C5'" C N N 207 DG "C4'" C N R 208 DG "O4'" O N N 209 DG "C3'" C N S 210 DG "O3'" O N N 211 DG "C2'" C N N 212 DG "C1'" C N R 213 DG N9 N Y N 214 DG C8 C Y N 215 DG N7 N Y N 216 DG C5 C Y N 217 DG C6 C N N 218 DG O6 O N N 219 DG N1 N N N 220 DG C2 C N N 221 DG N2 N N N 222 DG N3 N N N 223 DG C4 C Y N 224 DG HOP3 H N N 225 DG HOP2 H N N 226 DG "H5'" H N N 227 DG "H5''" H N N 228 DG "H4'" H N N 229 DG "H3'" H N N 230 DG "HO3'" H N N 231 DG "H2'" H N N 232 DG "H2''" H N N 233 DG "H1'" H N N 234 DG H8 H N N 235 DG H1 H N N 236 DG H21 H N N 237 DG H22 H N N 238 DOC N1 N N N 239 DOC C2 C N N 240 DOC N3 N N N 241 DOC C4 C N N 242 DOC C5 C N N 243 DOC C6 C N N 244 DOC O2 O N N 245 DOC N4 N N N 246 DOC "C1'" C N R 247 DOC "C2'" C N N 248 DOC "C3'" C N N 249 DOC "C4'" C N S 250 DOC "O4'" O N N 251 DOC "C5'" C N N 252 DOC "O5'" O N N 253 DOC P P N N 254 DOC OP1 O N N 255 DOC OP2 O N N 256 DOC OP3 O N N 257 DOC H5 H N N 258 DOC H6 H N N 259 DOC HN41 H N N 260 DOC HN42 H N N 261 DOC "H1'" H N N 262 DOC "H2'" H N N 263 DOC "H2''" H N N 264 DOC "H3'1" H N N 265 DOC "H3'2" H N N 266 DOC "H4'" H N N 267 DOC "H5'" H N N 268 DOC "H5''" H N N 269 DOC HOP2 H N N 270 DOC HOP3 H N N 271 DT OP3 O N N 272 DT P P N N 273 DT OP1 O N N 274 DT OP2 O N N 275 DT "O5'" O N N 276 DT "C5'" C N N 277 DT "C4'" C N R 278 DT "O4'" O N N 279 DT "C3'" C N S 280 DT "O3'" O N N 281 DT "C2'" C N N 282 DT "C1'" C N R 283 DT N1 N N N 284 DT C2 C N N 285 DT O2 O N N 286 DT N3 N N N 287 DT C4 C N N 288 DT O4 O N N 289 DT C5 C N N 290 DT C7 C N N 291 DT C6 C N N 292 DT HOP3 H N N 293 DT HOP2 H N N 294 DT "H5'" H N N 295 DT "H5''" H N N 296 DT "H4'" H N N 297 DT "H3'" H N N 298 DT "HO3'" H N N 299 DT "H2'" H N N 300 DT "H2''" H N N 301 DT "H1'" H N N 302 DT H3 H N N 303 DT H71 H N N 304 DT H72 H N N 305 DT H73 H N N 306 DT H6 H N N 307 GLN N N N N 308 GLN CA C N S 309 GLN C C N N 310 GLN O O N N 311 GLN CB C N N 312 GLN CG C N N 313 GLN CD C N N 314 GLN OE1 O N N 315 GLN NE2 N N N 316 GLN OXT O N N 317 GLN H H N N 318 GLN H2 H N N 319 GLN HA H N N 320 GLN HB2 H N N 321 GLN HB3 H N N 322 GLN HG2 H N N 323 GLN HG3 H N N 324 GLN HE21 H N N 325 GLN HE22 H N N 326 GLN HXT H N N 327 GLU N N N N 328 GLU CA C N S 329 GLU C C N N 330 GLU O O N N 331 GLU CB C N N 332 GLU CG C N N 333 GLU CD C N N 334 GLU OE1 O N N 335 GLU OE2 O N N 336 GLU OXT O N N 337 GLU H H N N 338 GLU H2 H N N 339 GLU HA H N N 340 GLU HB2 H N N 341 GLU HB3 H N N 342 GLU HG2 H N N 343 GLU HG3 H N N 344 GLU HE2 H N N 345 GLU HXT H N N 346 GLY N N N N 347 GLY CA C N N 348 GLY C C N N 349 GLY O O N N 350 GLY OXT O N N 351 GLY H H N N 352 GLY H2 H N N 353 GLY HA2 H N N 354 GLY HA3 H N N 355 GLY HXT H N N 356 HIS N N N N 357 HIS CA C N S 358 HIS C C N N 359 HIS O O N N 360 HIS CB C N N 361 HIS CG C Y N 362 HIS ND1 N Y N 363 HIS CD2 C Y N 364 HIS CE1 C Y N 365 HIS NE2 N Y N 366 HIS OXT O N N 367 HIS H H N N 368 HIS H2 H N N 369 HIS HA H N N 370 HIS HB2 H N N 371 HIS HB3 H N N 372 HIS HD1 H N N 373 HIS HD2 H N N 374 HIS HE1 H N N 375 HIS HE2 H N N 376 HIS HXT H N N 377 HOH O O N N 378 HOH H1 H N N 379 HOH H2 H N N 380 ILE N N N N 381 ILE CA C N S 382 ILE C C N N 383 ILE O O N N 384 ILE CB C N S 385 ILE CG1 C N N 386 ILE CG2 C N N 387 ILE CD1 C N N 388 ILE OXT O N N 389 ILE H H N N 390 ILE H2 H N N 391 ILE HA H N N 392 ILE HB H N N 393 ILE HG12 H N N 394 ILE HG13 H N N 395 ILE HG21 H N N 396 ILE HG22 H N N 397 ILE HG23 H N N 398 ILE HD11 H N N 399 ILE HD12 H N N 400 ILE HD13 H N N 401 ILE HXT H N N 402 LEU N N N N 403 LEU CA C N S 404 LEU C C N N 405 LEU O O N N 406 LEU CB C N N 407 LEU CG C N N 408 LEU CD1 C N N 409 LEU CD2 C N N 410 LEU OXT O N N 411 LEU H H N N 412 LEU H2 H N N 413 LEU HA H N N 414 LEU HB2 H N N 415 LEU HB3 H N N 416 LEU HG H N N 417 LEU HD11 H N N 418 LEU HD12 H N N 419 LEU HD13 H N N 420 LEU HD21 H N N 421 LEU HD22 H N N 422 LEU HD23 H N N 423 LEU HXT H N N 424 LYS N N N N 425 LYS CA C N S 426 LYS C C N N 427 LYS O O N N 428 LYS CB C N N 429 LYS CG C N N 430 LYS CD C N N 431 LYS CE C N N 432 LYS NZ N N N 433 LYS OXT O N N 434 LYS H H N N 435 LYS H2 H N N 436 LYS HA H N N 437 LYS HB2 H N N 438 LYS HB3 H N N 439 LYS HG2 H N N 440 LYS HG3 H N N 441 LYS HD2 H N N 442 LYS HD3 H N N 443 LYS HE2 H N N 444 LYS HE3 H N N 445 LYS HZ1 H N N 446 LYS HZ2 H N N 447 LYS HZ3 H N N 448 LYS HXT H N N 449 MET N N N N 450 MET CA C N S 451 MET C C N N 452 MET O O N N 453 MET CB C N N 454 MET CG C N N 455 MET SD S N N 456 MET CE C N N 457 MET OXT O N N 458 MET H H N N 459 MET H2 H N N 460 MET HA H N N 461 MET HB2 H N N 462 MET HB3 H N N 463 MET HG2 H N N 464 MET HG3 H N N 465 MET HE1 H N N 466 MET HE2 H N N 467 MET HE3 H N N 468 MET HXT H N N 469 MG MG MG N N 470 P P P N N 471 P OP1 O N N 472 P OP2 O N N 473 P OP3 O N N 474 P "O5'" O N N 475 P "C5'" C N N 476 P "C4'" C N R 477 P "O4'" O N N 478 P "C3'" C N S 479 P "O3'" O N N 480 P "C2'" C N N 481 P "C1'" C N R 482 P N9 N Y N 483 P C8 C Y N 484 P N7 N Y N 485 P C5 C Y N 486 P C6 C N N 487 P O6 O N N 488 P N1 N N N 489 P C2 C N N 490 P N2 N N N 491 P N3 N N N 492 P C4 C Y N 493 P C6A C N N 494 P C7A C N N 495 P C8A C N N 496 P HOP2 H N N 497 P HOP3 H N N 498 P "H5'" H N N 499 P "H5''" H N N 500 P "H4'" H N N 501 P "H3'" H N N 502 P "HO3'" H N N 503 P "H2'" H N N 504 P "H2''" H N N 505 P "H1'" H N N 506 P H8 H N N 507 P H2 H N N 508 P H6A1 H N N 509 P H6A2 H N N 510 P H7A1 H N N 511 P H7A2 H N N 512 P H8A1 H N N 513 P H8A2 H N N 514 PHE N N N N 515 PHE CA C N S 516 PHE C C N N 517 PHE O O N N 518 PHE CB C N N 519 PHE CG C Y N 520 PHE CD1 C Y N 521 PHE CD2 C Y N 522 PHE CE1 C Y N 523 PHE CE2 C Y N 524 PHE CZ C Y N 525 PHE OXT O N N 526 PHE H H N N 527 PHE H2 H N N 528 PHE HA H N N 529 PHE HB2 H N N 530 PHE HB3 H N N 531 PHE HD1 H N N 532 PHE HD2 H N N 533 PHE HE1 H N N 534 PHE HE2 H N N 535 PHE HZ H N N 536 PHE HXT H N N 537 PRO N N N N 538 PRO CA C N S 539 PRO C C N N 540 PRO O O N N 541 PRO CB C N N 542 PRO CG C N N 543 PRO CD C N N 544 PRO OXT O N N 545 PRO H H N N 546 PRO HA H N N 547 PRO HB2 H N N 548 PRO HB3 H N N 549 PRO HG2 H N N 550 PRO HG3 H N N 551 PRO HD2 H N N 552 PRO HD3 H N N 553 PRO HXT H N N 554 SER N N N N 555 SER CA C N S 556 SER C C N N 557 SER O O N N 558 SER CB C N N 559 SER OG O N N 560 SER OXT O N N 561 SER H H N N 562 SER H2 H N N 563 SER HA H N N 564 SER HB2 H N N 565 SER HB3 H N N 566 SER HG H N N 567 SER HXT H N N 568 THR N N N N 569 THR CA C N S 570 THR C C N N 571 THR O O N N 572 THR CB C N R 573 THR OG1 O N N 574 THR CG2 C N N 575 THR OXT O N N 576 THR H H N N 577 THR H2 H N N 578 THR HA H N N 579 THR HB H N N 580 THR HG1 H N N 581 THR HG21 H N N 582 THR HG22 H N N 583 THR HG23 H N N 584 THR HXT H N N 585 TRP N N N N 586 TRP CA C N S 587 TRP C C N N 588 TRP O O N N 589 TRP CB C N N 590 TRP CG C Y N 591 TRP CD1 C Y N 592 TRP CD2 C Y N 593 TRP NE1 N Y N 594 TRP CE2 C Y N 595 TRP CE3 C Y N 596 TRP CZ2 C Y N 597 TRP CZ3 C Y N 598 TRP CH2 C Y N 599 TRP OXT O N N 600 TRP H H N N 601 TRP H2 H N N 602 TRP HA H N N 603 TRP HB2 H N N 604 TRP HB3 H N N 605 TRP HD1 H N N 606 TRP HE1 H N N 607 TRP HE3 H N N 608 TRP HZ2 H N N 609 TRP HZ3 H N N 610 TRP HH2 H N N 611 TRP HXT H N N 612 TYR N N N N 613 TYR CA C N S 614 TYR C C N N 615 TYR O O N N 616 TYR CB C N N 617 TYR CG C Y N 618 TYR CD1 C Y N 619 TYR CD2 C Y N 620 TYR CE1 C Y N 621 TYR CE2 C Y N 622 TYR CZ C Y N 623 TYR OH O N N 624 TYR OXT O N N 625 TYR H H N N 626 TYR H2 H N N 627 TYR HA H N N 628 TYR HB2 H N N 629 TYR HB3 H N N 630 TYR HD1 H N N 631 TYR HD2 H N N 632 TYR HE1 H N N 633 TYR HE2 H N N 634 TYR HH H N N 635 TYR HXT H N N 636 VAL N N N N 637 VAL CA C N S 638 VAL C C N N 639 VAL O O N N 640 VAL CB C N N 641 VAL CG1 C N N 642 VAL CG2 C N N 643 VAL OXT O N N 644 VAL H H N N 645 VAL H2 H N N 646 VAL HA H N N 647 VAL HB H N N 648 VAL HG11 H N N 649 VAL HG12 H N N 650 VAL HG13 H N N 651 VAL HG21 H N N 652 VAL HG22 H N N 653 VAL HG23 H N N 654 VAL HXT H N N 655 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DCP N1 C2 sing N N 156 DCP N1 C6 sing N N 157 DCP N1 "C1'" sing N N 158 DCP C2 N3 sing N N 159 DCP C2 O2 doub N N 160 DCP N3 C4 doub N N 161 DCP C4 C5 sing N N 162 DCP C4 N4 sing N N 163 DCP C5 C6 doub N N 164 DCP C5 H5 sing N N 165 DCP C6 H6 sing N N 166 DCP N4 HN41 sing N N 167 DCP N4 HN42 sing N N 168 DCP "C1'" "C2'" sing N N 169 DCP "C1'" "O4'" sing N N 170 DCP "C1'" "H1'" sing N N 171 DCP "C2'" "C3'" sing N N 172 DCP "C2'" "H2'1" sing N N 173 DCP "C2'" "H2'2" sing N N 174 DCP "C3'" "C4'" sing N N 175 DCP "C3'" "O3'" sing N N 176 DCP "C3'" "H3'" sing N N 177 DCP "C4'" "O4'" sing N N 178 DCP "C4'" "C5'" sing N N 179 DCP "C4'" "H4'" sing N N 180 DCP "O3'" "HO3'" sing N N 181 DCP "C5'" "O5'" sing N N 182 DCP "C5'" "H5'1" sing N N 183 DCP "C5'" "H5'2" sing N N 184 DCP "O5'" PA sing N N 185 DCP PA O1A doub N N 186 DCP PA O2A sing N N 187 DCP PA O3A sing N N 188 DCP O2A HOA2 sing N N 189 DCP O3A PB sing N N 190 DCP PB O1B doub N N 191 DCP PB O2B sing N N 192 DCP PB O3B sing N N 193 DCP O2B HOB2 sing N N 194 DCP O3B PG sing N N 195 DCP PG O1G doub N N 196 DCP PG O2G sing N N 197 DCP PG O3G sing N N 198 DCP O2G HOG2 sing N N 199 DCP O3G HOG3 sing N N 200 DG OP3 P sing N N 201 DG OP3 HOP3 sing N N 202 DG P OP1 doub N N 203 DG P OP2 sing N N 204 DG P "O5'" sing N N 205 DG OP2 HOP2 sing N N 206 DG "O5'" "C5'" sing N N 207 DG "C5'" "C4'" sing N N 208 DG "C5'" "H5'" sing N N 209 DG "C5'" "H5''" sing N N 210 DG "C4'" "O4'" sing N N 211 DG "C4'" "C3'" sing N N 212 DG "C4'" "H4'" sing N N 213 DG "O4'" "C1'" sing N N 214 DG "C3'" "O3'" sing N N 215 DG "C3'" "C2'" sing N N 216 DG "C3'" "H3'" sing N N 217 DG "O3'" "HO3'" sing N N 218 DG "C2'" "C1'" sing N N 219 DG "C2'" "H2'" sing N N 220 DG "C2'" "H2''" sing N N 221 DG "C1'" N9 sing N N 222 DG "C1'" "H1'" sing N N 223 DG N9 C8 sing Y N 224 DG N9 C4 sing Y N 225 DG C8 N7 doub Y N 226 DG C8 H8 sing N N 227 DG N7 C5 sing Y N 228 DG C5 C6 sing N N 229 DG C5 C4 doub Y N 230 DG C6 O6 doub N N 231 DG C6 N1 sing N N 232 DG N1 C2 sing N N 233 DG N1 H1 sing N N 234 DG C2 N2 sing N N 235 DG C2 N3 doub N N 236 DG N2 H21 sing N N 237 DG N2 H22 sing N N 238 DG N3 C4 sing N N 239 DOC N1 C2 sing N N 240 DOC N1 C6 sing N N 241 DOC N1 "C1'" sing N N 242 DOC C2 N3 sing N N 243 DOC C2 O2 doub N N 244 DOC N3 C4 doub N N 245 DOC C4 C5 sing N N 246 DOC C4 N4 sing N N 247 DOC C5 C6 doub N N 248 DOC C5 H5 sing N N 249 DOC C6 H6 sing N N 250 DOC N4 HN41 sing N N 251 DOC N4 HN42 sing N N 252 DOC "C1'" "C2'" sing N N 253 DOC "C1'" "O4'" sing N N 254 DOC "C1'" "H1'" sing N N 255 DOC "C2'" "C3'" sing N N 256 DOC "C2'" "H2'" sing N N 257 DOC "C2'" "H2''" sing N N 258 DOC "C3'" "C4'" sing N N 259 DOC "C3'" "H3'1" sing N N 260 DOC "C3'" "H3'2" sing N N 261 DOC "C4'" "O4'" sing N N 262 DOC "C4'" "C5'" sing N N 263 DOC "C4'" "H4'" sing N N 264 DOC "C5'" "O5'" sing N N 265 DOC "C5'" "H5'" sing N N 266 DOC "C5'" "H5''" sing N N 267 DOC "O5'" P sing N N 268 DOC P OP1 doub N N 269 DOC P OP2 sing N N 270 DOC P OP3 sing N N 271 DOC OP2 HOP2 sing N N 272 DOC OP3 HOP3 sing N N 273 DT OP3 P sing N N 274 DT OP3 HOP3 sing N N 275 DT P OP1 doub N N 276 DT P OP2 sing N N 277 DT P "O5'" sing N N 278 DT OP2 HOP2 sing N N 279 DT "O5'" "C5'" sing N N 280 DT "C5'" "C4'" sing N N 281 DT "C5'" "H5'" sing N N 282 DT "C5'" "H5''" sing N N 283 DT "C4'" "O4'" sing N N 284 DT "C4'" "C3'" sing N N 285 DT "C4'" "H4'" sing N N 286 DT "O4'" "C1'" sing N N 287 DT "C3'" "O3'" sing N N 288 DT "C3'" "C2'" sing N N 289 DT "C3'" "H3'" sing N N 290 DT "O3'" "HO3'" sing N N 291 DT "C2'" "C1'" sing N N 292 DT "C2'" "H2'" sing N N 293 DT "C2'" "H2''" sing N N 294 DT "C1'" N1 sing N N 295 DT "C1'" "H1'" sing N N 296 DT N1 C2 sing N N 297 DT N1 C6 sing N N 298 DT C2 O2 doub N N 299 DT C2 N3 sing N N 300 DT N3 C4 sing N N 301 DT N3 H3 sing N N 302 DT C4 O4 doub N N 303 DT C4 C5 sing N N 304 DT C5 C7 sing N N 305 DT C5 C6 doub N N 306 DT C7 H71 sing N N 307 DT C7 H72 sing N N 308 DT C7 H73 sing N N 309 DT C6 H6 sing N N 310 GLN N CA sing N N 311 GLN N H sing N N 312 GLN N H2 sing N N 313 GLN CA C sing N N 314 GLN CA CB sing N N 315 GLN CA HA sing N N 316 GLN C O doub N N 317 GLN C OXT sing N N 318 GLN CB CG sing N N 319 GLN CB HB2 sing N N 320 GLN CB HB3 sing N N 321 GLN CG CD sing N N 322 GLN CG HG2 sing N N 323 GLN CG HG3 sing N N 324 GLN CD OE1 doub N N 325 GLN CD NE2 sing N N 326 GLN NE2 HE21 sing N N 327 GLN NE2 HE22 sing N N 328 GLN OXT HXT sing N N 329 GLU N CA sing N N 330 GLU N H sing N N 331 GLU N H2 sing N N 332 GLU CA C sing N N 333 GLU CA CB sing N N 334 GLU CA HA sing N N 335 GLU C O doub N N 336 GLU C OXT sing N N 337 GLU CB CG sing N N 338 GLU CB HB2 sing N N 339 GLU CB HB3 sing N N 340 GLU CG CD sing N N 341 GLU CG HG2 sing N N 342 GLU CG HG3 sing N N 343 GLU CD OE1 doub N N 344 GLU CD OE2 sing N N 345 GLU OE2 HE2 sing N N 346 GLU OXT HXT sing N N 347 GLY N CA sing N N 348 GLY N H sing N N 349 GLY N H2 sing N N 350 GLY CA C sing N N 351 GLY CA HA2 sing N N 352 GLY CA HA3 sing N N 353 GLY C O doub N N 354 GLY C OXT sing N N 355 GLY OXT HXT sing N N 356 HIS N CA sing N N 357 HIS N H sing N N 358 HIS N H2 sing N N 359 HIS CA C sing N N 360 HIS CA CB sing N N 361 HIS CA HA sing N N 362 HIS C O doub N N 363 HIS C OXT sing N N 364 HIS CB CG sing N N 365 HIS CB HB2 sing N N 366 HIS CB HB3 sing N N 367 HIS CG ND1 sing Y N 368 HIS CG CD2 doub Y N 369 HIS ND1 CE1 doub Y N 370 HIS ND1 HD1 sing N N 371 HIS CD2 NE2 sing Y N 372 HIS CD2 HD2 sing N N 373 HIS CE1 NE2 sing Y N 374 HIS CE1 HE1 sing N N 375 HIS NE2 HE2 sing N N 376 HIS OXT HXT sing N N 377 HOH O H1 sing N N 378 HOH O H2 sing N N 379 ILE N CA sing N N 380 ILE N H sing N N 381 ILE N H2 sing N N 382 ILE CA C sing N N 383 ILE CA CB sing N N 384 ILE CA HA sing N N 385 ILE C O doub N N 386 ILE C OXT sing N N 387 ILE CB CG1 sing N N 388 ILE CB CG2 sing N N 389 ILE CB HB sing N N 390 ILE CG1 CD1 sing N N 391 ILE CG1 HG12 sing N N 392 ILE CG1 HG13 sing N N 393 ILE CG2 HG21 sing N N 394 ILE CG2 HG22 sing N N 395 ILE CG2 HG23 sing N N 396 ILE CD1 HD11 sing N N 397 ILE CD1 HD12 sing N N 398 ILE CD1 HD13 sing N N 399 ILE OXT HXT sing N N 400 LEU N CA sing N N 401 LEU N H sing N N 402 LEU N H2 sing N N 403 LEU CA C sing N N 404 LEU CA CB sing N N 405 LEU CA HA sing N N 406 LEU C O doub N N 407 LEU C OXT sing N N 408 LEU CB CG sing N N 409 LEU CB HB2 sing N N 410 LEU CB HB3 sing N N 411 LEU CG CD1 sing N N 412 LEU CG CD2 sing N N 413 LEU CG HG sing N N 414 LEU CD1 HD11 sing N N 415 LEU CD1 HD12 sing N N 416 LEU CD1 HD13 sing N N 417 LEU CD2 HD21 sing N N 418 LEU CD2 HD22 sing N N 419 LEU CD2 HD23 sing N N 420 LEU OXT HXT sing N N 421 LYS N CA sing N N 422 LYS N H sing N N 423 LYS N H2 sing N N 424 LYS CA C sing N N 425 LYS CA CB sing N N 426 LYS CA HA sing N N 427 LYS C O doub N N 428 LYS C OXT sing N N 429 LYS CB CG sing N N 430 LYS CB HB2 sing N N 431 LYS CB HB3 sing N N 432 LYS CG CD sing N N 433 LYS CG HG2 sing N N 434 LYS CG HG3 sing N N 435 LYS CD CE sing N N 436 LYS CD HD2 sing N N 437 LYS CD HD3 sing N N 438 LYS CE NZ sing N N 439 LYS CE HE2 sing N N 440 LYS CE HE3 sing N N 441 LYS NZ HZ1 sing N N 442 LYS NZ HZ2 sing N N 443 LYS NZ HZ3 sing N N 444 LYS OXT HXT sing N N 445 MET N CA sing N N 446 MET N H sing N N 447 MET N H2 sing N N 448 MET CA C sing N N 449 MET CA CB sing N N 450 MET CA HA sing N N 451 MET C O doub N N 452 MET C OXT sing N N 453 MET CB CG sing N N 454 MET CB HB2 sing N N 455 MET CB HB3 sing N N 456 MET CG SD sing N N 457 MET CG HG2 sing N N 458 MET CG HG3 sing N N 459 MET SD CE sing N N 460 MET CE HE1 sing N N 461 MET CE HE2 sing N N 462 MET CE HE3 sing N N 463 MET OXT HXT sing N N 464 P P OP1 doub N N 465 P P OP2 sing N N 466 P P OP3 sing N N 467 P P "O5'" sing N N 468 P OP2 HOP2 sing N N 469 P OP3 HOP3 sing N N 470 P "O5'" "C5'" sing N N 471 P "C5'" "C4'" sing N N 472 P "C5'" "H5'" sing N N 473 P "C5'" "H5''" sing N N 474 P "C4'" "O4'" sing N N 475 P "C4'" "C3'" sing N N 476 P "C4'" "H4'" sing N N 477 P "O4'" "C1'" sing N N 478 P "C3'" "O3'" sing N N 479 P "C3'" "C2'" sing N N 480 P "C3'" "H3'" sing N N 481 P "O3'" "HO3'" sing N N 482 P "C2'" "C1'" sing N N 483 P "C2'" "H2'" sing N N 484 P "C2'" "H2''" sing N N 485 P "C1'" N9 sing N N 486 P "C1'" "H1'" sing N N 487 P N9 C8 sing Y N 488 P N9 C4 sing Y N 489 P C8 N7 doub Y N 490 P C8 H8 sing N N 491 P N7 C5 sing Y N 492 P C5 C6 sing N N 493 P C5 C4 doub Y N 494 P C6 O6 doub N N 495 P C6 N1 sing N N 496 P N1 C2 sing N N 497 P N1 C8A sing N N 498 P C2 N2 sing N N 499 P C2 N3 doub N N 500 P N2 C6A sing N N 501 P N2 H2 sing N N 502 P N3 C4 sing N N 503 P C6A C7A sing N N 504 P C6A H6A1 sing N N 505 P C6A H6A2 sing N N 506 P C7A C8A sing N N 507 P C7A H7A1 sing N N 508 P C7A H7A2 sing N N 509 P C8A H8A1 sing N N 510 P C8A H8A2 sing N N 511 PHE N CA sing N N 512 PHE N H sing N N 513 PHE N H2 sing N N 514 PHE CA C sing N N 515 PHE CA CB sing N N 516 PHE CA HA sing N N 517 PHE C O doub N N 518 PHE C OXT sing N N 519 PHE CB CG sing N N 520 PHE CB HB2 sing N N 521 PHE CB HB3 sing N N 522 PHE CG CD1 doub Y N 523 PHE CG CD2 sing Y N 524 PHE CD1 CE1 sing Y N 525 PHE CD1 HD1 sing N N 526 PHE CD2 CE2 doub Y N 527 PHE CD2 HD2 sing N N 528 PHE CE1 CZ doub Y N 529 PHE CE1 HE1 sing N N 530 PHE CE2 CZ sing Y N 531 PHE CE2 HE2 sing N N 532 PHE CZ HZ sing N N 533 PHE OXT HXT sing N N 534 PRO N CA sing N N 535 PRO N CD sing N N 536 PRO N H sing N N 537 PRO CA C sing N N 538 PRO CA CB sing N N 539 PRO CA HA sing N N 540 PRO C O doub N N 541 PRO C OXT sing N N 542 PRO CB CG sing N N 543 PRO CB HB2 sing N N 544 PRO CB HB3 sing N N 545 PRO CG CD sing N N 546 PRO CG HG2 sing N N 547 PRO CG HG3 sing N N 548 PRO CD HD2 sing N N 549 PRO CD HD3 sing N N 550 PRO OXT HXT sing N N 551 SER N CA sing N N 552 SER N H sing N N 553 SER N H2 sing N N 554 SER CA C sing N N 555 SER CA CB sing N N 556 SER CA HA sing N N 557 SER C O doub N N 558 SER C OXT sing N N 559 SER CB OG sing N N 560 SER CB HB2 sing N N 561 SER CB HB3 sing N N 562 SER OG HG sing N N 563 SER OXT HXT sing N N 564 THR N CA sing N N 565 THR N H sing N N 566 THR N H2 sing N N 567 THR CA C sing N N 568 THR CA CB sing N N 569 THR CA HA sing N N 570 THR C O doub N N 571 THR C OXT sing N N 572 THR CB OG1 sing N N 573 THR CB CG2 sing N N 574 THR CB HB sing N N 575 THR OG1 HG1 sing N N 576 THR CG2 HG21 sing N N 577 THR CG2 HG22 sing N N 578 THR CG2 HG23 sing N N 579 THR OXT HXT sing N N 580 TRP N CA sing N N 581 TRP N H sing N N 582 TRP N H2 sing N N 583 TRP CA C sing N N 584 TRP CA CB sing N N 585 TRP CA HA sing N N 586 TRP C O doub N N 587 TRP C OXT sing N N 588 TRP CB CG sing N N 589 TRP CB HB2 sing N N 590 TRP CB HB3 sing N N 591 TRP CG CD1 doub Y N 592 TRP CG CD2 sing Y N 593 TRP CD1 NE1 sing Y N 594 TRP CD1 HD1 sing N N 595 TRP CD2 CE2 doub Y N 596 TRP CD2 CE3 sing Y N 597 TRP NE1 CE2 sing Y N 598 TRP NE1 HE1 sing N N 599 TRP CE2 CZ2 sing Y N 600 TRP CE3 CZ3 doub Y N 601 TRP CE3 HE3 sing N N 602 TRP CZ2 CH2 doub Y N 603 TRP CZ2 HZ2 sing N N 604 TRP CZ3 CH2 sing Y N 605 TRP CZ3 HZ3 sing N N 606 TRP CH2 HH2 sing N N 607 TRP OXT HXT sing N N 608 TYR N CA sing N N 609 TYR N H sing N N 610 TYR N H2 sing N N 611 TYR CA C sing N N 612 TYR CA CB sing N N 613 TYR CA HA sing N N 614 TYR C O doub N N 615 TYR C OXT sing N N 616 TYR CB CG sing N N 617 TYR CB HB2 sing N N 618 TYR CB HB3 sing N N 619 TYR CG CD1 doub Y N 620 TYR CG CD2 sing Y N 621 TYR CD1 CE1 sing Y N 622 TYR CD1 HD1 sing N N 623 TYR CD2 CE2 doub Y N 624 TYR CD2 HD2 sing N N 625 TYR CE1 CZ doub Y N 626 TYR CE1 HE1 sing N N 627 TYR CE2 CZ sing Y N 628 TYR CE2 HE2 sing N N 629 TYR CZ OH sing N N 630 TYR OH HH sing N N 631 TYR OXT HXT sing N N 632 VAL N CA sing N N 633 VAL N H sing N N 634 VAL N H2 sing N N 635 VAL CA C sing N N 636 VAL CA CB sing N N 637 VAL CA HA sing N N 638 VAL C O doub N N 639 VAL C OXT sing N N 640 VAL CB CG1 sing N N 641 VAL CB CG2 sing N N 642 VAL CB HB sing N N 643 VAL CG1 HG11 sing N N 644 VAL CG1 HG12 sing N N 645 VAL CG1 HG13 sing N N 646 VAL CG2 HG21 sing N N 647 VAL CG2 HG22 sing N N 648 VAL CG2 HG23 sing N N 649 VAL OXT HXT sing N N 650 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BJY 'double helix' 3BJY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 5 1_555 C DOC 12 1_555 -0.174 -0.166 -0.679 -25.235 -9.033 -5.359 1 T_DG5:DOC12_P T 5 ? P 12 ? 19 1 1 B DT 6 1_555 C DA 11 1_555 -0.032 -0.152 -0.099 -7.982 -10.171 5.772 2 T_DT6:DA11_P T 6 ? P 11 ? 20 1 1 B DA 7 1_555 C DT 10 1_555 0.314 -0.051 -0.189 -5.472 -7.178 2.704 3 T_DA7:DT10_P T 7 ? P 10 ? 20 1 1 B DG 8 1_555 C DC 9 1_555 0.072 -0.183 0.210 8.470 -6.445 -4.645 4 T_DG8:DC9_P T 8 ? P 9 ? 19 1 1 B DG 9 1_555 C DC 8 1_555 -0.016 -0.152 0.098 -3.596 -5.402 -0.317 5 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 B DG 10 1_555 C DC 7 1_555 -0.172 -0.099 0.240 -11.213 -15.468 3.003 6 T_DG10:DC7_P T 10 ? P 7 ? 19 1 1 B DG 11 1_555 C DC 6 1_555 -0.057 -0.042 -0.287 -1.001 -6.552 -1.255 7 T_DG11:DC6_P T 11 ? P 6 ? 19 1 1 B DA 12 1_555 C DT 5 1_555 0.182 0.064 0.140 8.017 -9.832 -0.963 8 T_DA12:DT5_P T 12 ? P 5 ? 20 1 1 B DG 13 1_555 C DC 4 1_555 0.177 -0.160 0.366 12.150 -12.146 -4.138 9 T_DG13:DC4_P T 13 ? P 4 ? 19 1 1 B DG 14 1_555 C DC 3 1_555 -0.066 -0.219 -0.287 -0.545 -13.164 -4.448 10 T_DG14:DC3_P T 14 ? P 3 ? 19 1 1 B DA 15 1_555 C DT 2 1_555 0.190 -0.078 -0.345 -9.495 -5.993 -1.969 11 T_DA15:DT2_P T 15 ? P 2 ? 20 1 1 B DT 16 1_555 C DA 1 1_555 0.203 -0.220 -0.166 7.799 -3.897 -6.920 12 T_DT16:DA1_P T 16 ? P 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 5 1_555 C DOC 12 1_555 B DT 6 1_555 C DA 11 1_555 0.566 0.788 2.905 -8.798 10.539 17.640 -1.580 -4.480 2.450 29.277 24.440 22.319 1 TT_DG5DT6:DA11DOC12_PP T 5 ? P 12 ? T 6 ? P 11 ? 1 B DT 6 1_555 C DA 11 1_555 B DA 7 1_555 C DT 10 1_555 -0.795 0.909 3.375 -0.819 6.273 40.096 0.574 1.050 3.488 9.081 1.185 40.572 2 TT_DT6DA7:DT10DA11_PP T 6 ? P 11 ? T 7 ? P 10 ? 1 B DA 7 1_555 C DT 10 1_555 B DG 8 1_555 C DC 9 1_555 0.239 -0.116 3.058 -2.820 3.582 24.950 -1.225 -1.302 2.968 8.204 6.457 25.357 3 TT_DA7DG8:DC9DT10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 B DG 8 1_555 C DC 9 1_555 B DG 9 1_555 C DC 8 1_555 -0.595 -0.488 3.528 -3.200 4.594 40.253 -1.253 0.473 3.489 6.637 4.623 40.625 4 TT_DG8DG9:DC8DC9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 B DG 9 1_555 C DC 8 1_555 B DG 10 1_555 C DC 7 1_555 0.838 -0.951 3.417 -1.812 6.421 32.627 -2.743 -1.768 3.129 11.283 3.183 33.284 5 TT_DG9DG10:DC7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 B DG 10 1_555 C DC 7 1_555 B DG 11 1_555 C DC 6 1_555 -1.321 -0.248 3.048 3.292 2.583 30.678 -0.918 3.053 2.864 4.854 -6.186 30.955 6 TT_DG10DG11:DC6DC7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 B DG 11 1_555 C DC 6 1_555 B DA 12 1_555 C DT 5 1_555 -0.644 0.537 3.122 -5.666 2.444 37.408 0.522 0.284 3.209 3.779 8.760 37.896 7 TT_DG11DA12:DT5DC6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 B DA 12 1_555 C DT 5 1_555 B DG 13 1_555 C DC 4 1_555 0.360 0.252 3.219 -0.819 4.090 31.102 -0.294 -0.819 3.215 7.586 1.519 31.374 8 TT_DA12DG13:DC4DT5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 B DG 13 1_555 C DC 4 1_555 B DG 14 1_555 C DC 3 1_555 -0.148 -0.026 3.658 4.442 8.404 37.590 -1.190 0.831 3.532 12.793 -6.762 38.731 9 TT_DG13DG14:DC3DC4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 B DG 14 1_555 C DC 3 1_555 B DA 15 1_555 C DT 2 1_555 0.015 -0.330 3.439 0.002 0.519 37.022 -0.593 -0.023 3.434 0.818 -0.004 37.026 10 TT_DG14DA15:DT2DC3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 B DA 15 1_555 C DT 2 1_555 B DT 16 1_555 C DA 1 1_555 0.614 -0.913 3.068 0.085 0.906 30.553 -1.900 -1.150 3.042 1.719 -0.161 30.567 11 TT_DA15DT16:DA1DT2_PP T 15 ? P 2 ? T 16 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" DCP 5 'MAGNESIUM ION' MG 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2AQ4 _pdbx_initial_refinement_model.details ? #