HEADER IMMUNE SYSTEM 06-DEC-07 3BKC TITLE CRYSTAL STRUCTURE OF ANTI-AMYLOID BETA FAB WO2 (P21, FORMB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: WO2 IGG2A FAB FRAGMENT LIGHT CHAIN KAPPA; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: WO2 IGG2A FAB FRAGMENT HEAVY CHAIN; COMPND 6 CHAIN: H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 OTHER_DETAILS: HYBRIDOMA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB/C; SOURCE 12 OTHER_DETAILS: HYBRIDOMA KEYWDS ABETA, AMYLOID BETA PEPTIDE, FAB, WO2, ALZHEIMER'S DISEASE, KEYWDS 2 IMMUNOTHERAPIES, APP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.A.MILES,K.S.WUN,G.A.CRESPI,M.FODERO-TAVOLETTI,D.GALATIS, AUTHOR 2 C.J.BAGELEY,K.BEYREUTHER,C.L.MASTERS,R.CAPPAI,W.J.MCKINSTRY, AUTHOR 3 K.J.BARNHAM,M.W.PARKER REVDAT 2 24-FEB-09 3BKC 1 VERSN REVDAT 1 15-APR-08 3BKC 0 JRNL AUTH L.A.MILES,K.S.WUN,G.A.CRESPI,M.T.FODERO-TAVOLETTI, JRNL AUTH 2 D.GALATIS,C.J.BAGLEY,K.BEYREUTHER,C.L.MASTERS, JRNL AUTH 3 R.CAPPAI,W.J.MCKINSTRY,K.J.BARNHAM,M.W.PARKER JRNL TITL AMYLOID-BETA-ANTI-AMYLOID-BETA COMPLEX STRUCTURE JRNL TITL 2 REVEALS AN EXTENDED CONFORMATION IN THE JRNL TITL 3 IMMUNODOMINANT B-CELL EPITOPE. JRNL REF J.MOL.BIOL. V. 377 181 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18237744 JRNL DOI 10.1016/J.JMB.2007.12.036 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 33358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1668 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1597 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3501 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2356 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4770 ; 1.680 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5743 ; 0.982 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 7.162 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;30.062 ;23.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;15.384 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.362 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3869 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 709 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 570 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2380 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1643 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1913 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 287 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.648 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.443 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.310 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.297 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2201 ; 1.080 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 888 ; 0.276 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3586 ; 1.948 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 2.916 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1184 ; 4.312 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3BKC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB045626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER. ADJUSTABLE REMARK 200 FOCUSING MIRRORS IN K-B REMARK 200 GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 51.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 25% (V/V) PEG 550 MME, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.58200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP L -32 REMARK 465 GLN L -31 REMARK 465 SER L -30 REMARK 465 PRO L -29 REMARK 465 GLN L -28 REMARK 465 ALA L -27 REMARK 465 VAL L -26 REMARK 465 SER L -25 REMARK 465 SER L -24 REMARK 465 GLY L -23 REMARK 465 CYS L -22 REMARK 465 LEU L -21 REMARK 465 LEU L -20 REMARK 465 LYS L -19 REMARK 465 MET L -18 REMARK 465 LYS L -17 REMARK 465 LEU L -16 REMARK 465 PRO L -15 REMARK 465 VAL L -14 REMARK 465 ARG L -13 REMARK 465 LEU L -12 REMARK 465 LEU L -11 REMARK 465 VAL L -10 REMARK 465 LEU L -9 REMARK 465 MET L -8 REMARK 465 PHE L -7 REMARK 465 TRP L -6 REMARK 465 ILE L -5 REMARK 465 PRO L -4 REMARK 465 GLY L -3 REMARK 465 SER L -2 REMARK 465 SER L -1 REMARK 465 SER L 0 REMARK 465 CYS L 213 REMARK 465 GLU H 1 REMARK 465 ASP H 214 REMARK 465 CYS H 215 REMARK 465 GLY H 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 212 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP H 54 NA NA H 217 1.63 REMARK 500 OG SER H 113 OD2 ASP H 173 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 302 O HOH H 285 1556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 39 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG H 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 51 -49.79 70.10 REMARK 500 SER H 15 -17.74 84.29 REMARK 500 ASP H 55 -2.48 78.52 REMARK 500 VAL H 100D 76.73 -105.96 REMARK 500 CYS H 128 60.84 -58.62 REMARK 500 ASP H 173 -5.93 77.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA H 217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BAE RELATED DB: PDB REMARK 900 FAB WO2 IN COMPLEX WITH LIGAND AMYLOID BETA PEPTIDE REMARK 900 RESIDUES 1-28 REMARK 900 RELATED ID: 3BKJ RELATED DB: PDB REMARK 900 RELATED ID: 3BKM RELATED DB: PDB DBREF 3BKC L -32 213 PDB 3BKC 3BKC -32 213 DBREF 3BKC H 1 216 PDB 3BKC 3BKC 1 216 SEQRES 1 L 252 ASP GLN SER PRO GLN ALA VAL SER SER GLY CYS LEU LEU SEQRES 2 L 252 LYS MET LYS LEU PRO VAL ARG LEU LEU VAL LEU MET PHE SEQRES 3 L 252 TRP ILE PRO GLY SER SER SER ASP VAL LEU MET THR GLN SEQRES 4 L 252 THR PRO LEU SER LEU PRO VAL ASN LEU GLY GLU GLN ALA SEQRES 5 L 252 SER ILE SER CYS ARG SER SER GLN SER ILE VAL HIS SER SEQRES 6 L 252 ASN GLY HIS THR TYR LEU GLU TRP TYR LEU GLN ARG PRO SEQRES 7 L 252 GLY GLN SER PRO LYS LEU LEU ILE TYR GLN VAL SER THR SEQRES 8 L 252 ARG PHE SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SEQRES 9 L 252 SER GLY THR ASP PHE THR LEU ARG ILE SER ARG VAL GLU SEQRES 10 L 252 ALA GLU ASP LEU GLY VAL TYR TYR CYS PHE GLN ALA SER SEQRES 11 L 252 LEU VAL PRO LEU THR PHE GLY ALA GLY THR LYS LEU GLU SEQRES 12 L 252 LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 13 L 252 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 14 L 252 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 15 L 252 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 16 L 252 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 17 L 252 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 18 L 252 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 19 L 252 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 20 L 252 ASN ARG ASN GLU CYS SEQRES 1 H 228 GLU VAL THR LEU LYS GLU SER GLY PRO GLY LEU LEU LYS SEQRES 2 H 228 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 H 228 PHE SER ILE ARG THR SER LYS VAL GLY VAL SER TRP ILE SEQRES 4 H 228 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 H 228 ILE TYR TRP ASP ASP ASP LYS ARG TYR ASN PRO SER LEU SEQRES 6 H 228 GLU SER ARG LEU THR ILE SER LYS ASP THR SER ARG ASP SEQRES 7 H 228 MET VAL PHE MET LYS ILE THR SER VAL ASP THR ALA ASP SEQRES 8 H 228 THR ALA THR TYR TYR CYS ALA ARG ARG GLY PHE TYR GLY SEQRES 9 H 228 ARG LYS TYR GLU VAL ASN HIS PHE ASP TYR TRP GLY GLN SEQRES 10 H 228 GLY THR THR LEU THR VAL SER SER ALA LYS THR THR ALA SEQRES 11 H 228 PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR SEQRES 12 H 228 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 13 H 228 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 14 H 228 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 228 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 16 H 228 THR SER SER THR TRP PRO SER GLU SER ILE THR CYS ASN SEQRES 17 H 228 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 18 H 228 ILE VAL PRO ARG ASP CYS GLY HET NA H 217 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *364(H2 O) HELIX 1 1 GLU L 79 LEU L 83 5 5 HELIX 2 2 SER L 120 THR L 125 1 6 HELIX 3 3 LYS L 182 ARG L 187 1 6 HELIX 4 4 SER H 28 LYS H 33 1 6 HELIX 5 5 LEU H 63 SER H 65 5 3 HELIX 6 6 THR H 73 ARG H 75 5 3 HELIX 7 7 ASP H 83 THR H 87 5 5 HELIX 8 8 SER H 156 SER H 158 5 3 HELIX 9 9 PRO H 200 SER H 203 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O ARG L 74 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 B 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 102 LEU L 106 1 O LYS L 103 N LEU L 11 SHEET 3 C 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 THR L 113 PHE L 117 0 SHEET 2 D 4 GLY L 128 PHE L 138 -1 O ASN L 136 N THR L 113 SHEET 3 D 4 TYR L 172 THR L 181 -1 O LEU L 180 N ALA L 129 SHEET 4 D 4 VAL L 158 TRP L 162 -1 N SER L 161 O SER L 175 SHEET 1 E 4 SER L 152 ARG L 154 0 SHEET 2 E 4 ASN L 144 ILE L 149 -1 N ILE L 149 O SER L 152 SHEET 3 E 4 SER L 190 THR L 196 -1 O GLU L 194 N LYS L 146 SHEET 4 E 4 ILE L 204 ASN L 209 -1 O ILE L 204 N ALA L 195 SHEET 1 F 4 THR H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 F 4 MET H 77 ILE H 82 -1 O MET H 80 N LEU H 20 SHEET 4 F 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 G 6 LEU H 11 LEU H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 G 6 ALA H 88 PHE H 97 -1 N ALA H 88 O LEU H 109 SHEET 4 G 6 GLY H 35 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 G 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 LYS H 57 TYR H 59 -1 O ARG H 58 N HIS H 50 SHEET 1 H 4 LEU H 11 LEU H 12 0 SHEET 2 H 4 THR H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 H 4 ALA H 88 PHE H 97 -1 N ALA H 88 O LEU H 109 SHEET 4 H 4 ASN H 100E TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 SER H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 I 4 LEU H 174 THR H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 I 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 SER H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 J 4 LEU H 174 THR H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 J 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 K 3 THR H 151 TRP H 154 0 SHEET 2 K 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 K 3 THR H 204 LYS H 209 -1 O THR H 204 N HIS H 199 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.11 SSBOND 2 CYS L 133 CYS L 193 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 92 1555 1555 1.99 SSBOND 4 CYS H 140 CYS H 195 1555 1555 2.03 LINK OD1 ASP H 56 NA NA H 217 1555 1555 2.79 CISPEP 1 THR L 7 PRO L 8 0 -7.26 CISPEP 2 VAL L 94 PRO L 95 0 1.69 CISPEP 3 TYR L 139 PRO L 140 0 3.56 CISPEP 4 PHE H 146 PRO H 147 0 -5.11 CISPEP 5 GLU H 148 PRO H 149 0 1.66 CISPEP 6 TRP H 188 PRO H 189 0 6.25 SITE 1 AC1 2 ASP H 54 ASP H 56 CRYST1 40.404 111.164 53.090 90.00 103.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024750 0.000000 0.006071 0.00000 SCALE2 0.000000 0.008996 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019394 0.00000