HEADER DNA BINDING PROTEIN/DNA 21-DEC-07 3BRG TITLE CSL (RBP-JK) BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS; COMPND 13 CHAIN: C; COMPND 14 FRAGMENT: CORE DOMAIN; COMPND 15 SYNONYM: J KAPPA-RECOMBINATION SIGNAL-BINDING PROTEIN, RBP-J KAPPA; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 GENE: RBPJ, IGKJRB1, IGKRSBP, RBPSUH; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS PROTEIN-DNA COMPLEX, SIGNALING, TRANSCRIPTION, NOTCH, ACTIVATOR, KEYWDS 2 ALTERNATIVE SPLICING, DNA-BINDING, NOTCH SIGNALING PATHWAY, NUCLEUS, KEYWDS 3 REPRESSOR, TRANSCRIPTION REGULATION, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.FRIEDMANN,R.A.KOVALL REVDAT 6 21-FEB-24 3BRG 1 REMARK SEQADV REVDAT 5 25-OCT-17 3BRG 1 REMARK REVDAT 4 24-FEB-09 3BRG 1 VERSN REVDAT 3 03-JUN-08 3BRG 1 JRNL REVDAT 2 22-APR-08 3BRG 1 JRNL REVDAT 1 01-APR-08 3BRG 0 JRNL AUTH D.R.FRIEDMANN,J.J.WILSON,R.A.KOVALL JRNL TITL RAM-INDUCED ALLOSTERY FACILITATES ASSEMBLY OF A NOTCH JRNL TITL 2 PATHWAY ACTIVE TRANSCRIPTION COMPLEX. JRNL REF J.BIOL.CHEM. V. 283 14781 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18381292 JRNL DOI 10.1074/JBC.M709501200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0020 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3290 REMARK 3 NUCLEIC ACID ATOMS : 609 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4078 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5611 ; 1.635 ; 2.161 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 8.804 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;36.037 ;24.079 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;19.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.281 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2835 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1565 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2603 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.236 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.041 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3335 ; 1.366 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2435 ; 1.734 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2276 ; 2.638 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3BRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000045875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, SODIUM CHLORIDE, PEG 3350, REMARK 280 XYLITOL, PH 5.5, UNDER OIL MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.38450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.69400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.38450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.69400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 48 REMARK 465 PRO C 49 REMARK 465 LEU C 50 REMARK 465 GLY C 51 REMARK 465 SER C 52 REMARK 465 GLN C 198 REMARK 465 SER C 199 REMARK 465 SER C 256 REMARK 465 GLU C 257 REMARK 465 GLY C 258 REMARK 465 GLU C 259 REMARK 465 GLU C 260 REMARK 465 PHE C 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 1 N1 DA A 1 C2 0.085 REMARK 500 DA A 1 N3 DA A 1 C4 0.089 REMARK 500 DA A 1 C6 DA A 1 N1 -0.055 REMARK 500 DA A 1 C8 DA A 1 N9 -0.051 REMARK 500 DA A 2 N3 DA A 2 C4 -0.039 REMARK 500 DA A 2 C4 DA A 2 C5 0.065 REMARK 500 DA A 2 C5 DA A 2 N7 -0.039 REMARK 500 DT B 1 O5' DT B 1 C5' 0.359 REMARK 500 DT B 1 N1 DT B 1 C2 0.097 REMARK 500 DT B 1 C4 DT B 1 C5 0.101 REMARK 500 DT B 1 C6 DT B 1 N1 0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 1 C4 - C5 - N7 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DA A 1 N9 - C4 - C5 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DA A 11 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA A 13 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DT A 15 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT B 1 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT B 1 C4 - C5 - C7 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT B 1 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT B 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = -6.9 DEGREES REMARK 500 DT B 5 C4 - C5 - C7 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 DG B 14 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DA B 15 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 LEU C 326 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG C 438 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 133 -150.03 -129.09 REMARK 500 ASP C 135 -149.96 -128.51 REMARK 500 GLN C 136 49.27 -75.34 REMARK 500 SER C 176 10.08 88.63 REMARK 500 ILE C 179 -60.79 -95.35 REMARK 500 SER C 194 -145.99 -52.54 REMARK 500 ASP C 252 18.53 -67.29 REMARK 500 ASP C 253 20.94 27.74 REMARK 500 LYS C 295 -105.51 47.42 REMARK 500 ASP C 303 13.41 -144.65 REMARK 500 GLN C 328 -115.30 57.33 REMARK 500 CYS C 339 97.81 73.23 REMARK 500 LYS C 341 -71.84 -43.48 REMARK 500 ALA C 436 -65.86 13.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG C 218 LEU C 219 142.44 REMARK 500 SER C 435 ALA C 436 101.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA B 15 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BRD RELATED DB: PDB REMARK 900 RELATED ID: 3BRF RELATED DB: PDB DBREF 3BRG C 53 474 UNP P31266 SUH_MOUSE 53 474 DBREF 3BRG A 1 15 PDB 3BRG 3BRG 1 15 DBREF 3BRG B 1 15 PDB 3BRG 3BRG 1 15 SEQADV 3BRG GLY C 48 UNP P31266 EXPRESSION TAG SEQADV 3BRG PRO C 49 UNP P31266 EXPRESSION TAG SEQADV 3BRG LEU C 50 UNP P31266 EXPRESSION TAG SEQADV 3BRG GLY C 51 UNP P31266 EXPRESSION TAG SEQADV 3BRG SER C 52 UNP P31266 EXPRESSION TAG SEQRES 1 A 15 DA DA DT DC DT DT DT DC DC DC DA DC DA SEQRES 2 A 15 DG DT SEQRES 1 B 15 DT DT DA DC DT DG DT DG DG DG DA DA DA SEQRES 2 B 15 DG DA SEQRES 1 C 427 GLY PRO LEU GLY SER PRO PRO LYS ARG LEU THR ARG GLU SEQRES 2 C 427 ALA MET ARG ASN TYR LEU LYS GLU ARG GLY ASP GLN THR SEQRES 3 C 427 VAL LEU ILE LEU HIS ALA LYS VAL ALA GLN LYS SER TYR SEQRES 4 C 427 GLY ASN GLU LYS ARG PHE PHE CYS PRO PRO PRO CYS VAL SEQRES 5 C 427 TYR LEU MET GLY SER GLY TRP LYS LYS LYS LYS GLU GLN SEQRES 6 C 427 MET GLU ARG ASP GLY CYS SER GLU GLN GLU SER GLN PRO SEQRES 7 C 427 CYS ALA PHE ILE GLY ILE GLY ASN SER ASP GLN GLU MET SEQRES 8 C 427 GLN GLN LEU ASN LEU GLU GLY LYS ASN TYR CYS THR ALA SEQRES 9 C 427 LYS THR LEU TYR ILE SER ASP SER ASP LYS ARG LYS HIS SEQRES 10 C 427 PHE MET LEU SER VAL LYS MET PHE TYR GLY ASN SER ASP SEQRES 11 C 427 ASP ILE GLY VAL PHE LEU SER LYS ARG ILE LYS VAL ILE SEQRES 12 C 427 SER LYS PRO SER LYS LYS LYS GLN SER LEU LYS ASN ALA SEQRES 13 C 427 ASP LEU CYS ILE ALA SER GLY THR LYS VAL ALA LEU PHE SEQRES 14 C 427 ASN ARG LEU ARG SER GLN THR VAL SER THR ARG TYR LEU SEQRES 15 C 427 HIS VAL GLU GLY GLY ASN PHE HIS ALA SER SER GLN GLN SEQRES 16 C 427 TRP GLY ALA PHE TYR ILE HIS LEU LEU ASP ASP ASP GLU SEQRES 17 C 427 SER GLU GLY GLU GLU PHE THR VAL ARG ASP GLY TYR ILE SEQRES 18 C 427 HIS TYR GLY GLN THR VAL LYS LEU VAL CYS SER VAL THR SEQRES 19 C 427 GLY MET ALA LEU PRO ARG LEU ILE ILE ARG LYS VAL ASP SEQRES 20 C 427 LYS GLN THR ALA LEU LEU ASP ALA ASP ASP PRO VAL SER SEQRES 21 C 427 GLN LEU HIS LYS CYS ALA PHE TYR LEU LYS ASP THR GLU SEQRES 22 C 427 ARG MET TYR LEU CYS LEU SER GLN GLU ARG ILE ILE GLN SEQRES 23 C 427 PHE GLN ALA THR PRO CYS PRO LYS GLU GLN ASN LYS GLU SEQRES 24 C 427 MET ILE ASN ASP GLY ALA SER TRP THR ILE ILE SER THR SEQRES 25 C 427 ASP LYS ALA GLU TYR THR PHE TYR GLU GLY MET GLY PRO SEQRES 26 C 427 VAL LEU ALA PRO VAL THR PRO VAL PRO VAL VAL GLU SER SEQRES 27 C 427 LEU GLN LEU ASN GLY GLY GLY ASP VAL ALA MET LEU GLU SEQRES 28 C 427 LEU THR GLY GLN ASN PHE THR PRO ASN LEU ARG VAL TRP SEQRES 29 C 427 PHE GLY ASP VAL GLU ALA GLU THR MET TYR ARG CYS GLY SEQRES 30 C 427 GLU SER MET LEU CYS VAL VAL PRO ASP ILE SER ALA PHE SEQRES 31 C 427 ARG GLU GLY TRP ARG TRP VAL ARG GLN PRO VAL GLN VAL SEQRES 32 C 427 PRO VAL THR LEU VAL ARG ASN ASP GLY VAL ILE TYR SER SEQRES 33 C 427 THR SER LEU THR PHE THR TYR THR PRO GLU PRO HET EDO C 1 4 HET EDO C 2 4 HET EDO C 3 4 HET EDO C 4 4 HET EDO C 5 4 HET EDO C 6 4 HET EDO C 7 4 HET EDO C 8 4 HET EDO C 9 4 HET EDO C 10 4 HET EDO C 11 4 HET EDO C 12 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 12(C2 H6 O2) FORMUL 16 HOH *134(H2 O) HELIX 1 1 THR C 58 ARG C 69 1 12 HELIX 2 2 SER C 104 ASP C 116 1 13 HELIX 3 3 SER C 119 GLN C 124 1 6 HELIX 4 4 ASN C 202 CYS C 206 5 5 HELIX 5 5 ASN C 349 SER C 353 5 5 HELIX 6 6 ASP C 433 PHE C 437 5 5 SHEET 1 A 8 VAL C 415 GLU C 416 0 SHEET 2 A 8 LEU C 408 PHE C 412 -1 N PHE C 412 O VAL C 415 SHEET 3 A 8 VAL C 448 ARG C 456 -1 O THR C 453 N TRP C 411 SHEET 4 A 8 VAL C 460 TYR C 470 -1 O TYR C 462 N LEU C 454 SHEET 5 A 8 TRP C 354 GLU C 368 -1 N TYR C 367 O ILE C 461 SHEET 6 A 8 GLN C 72 ALA C 79 -1 N GLN C 72 O PHE C 366 SHEET 7 A 8 CYS C 98 MET C 102 -1 O CYS C 98 N LEU C 77 SHEET 8 A 8 TYR C 148 THR C 150 -1 O CYS C 149 N VAL C 99 SHEET 1 B 8 ASN C 235 SER C 239 0 SHEET 2 B 8 ARG C 227 GLU C 232 -1 N GLU C 232 O ASN C 235 SHEET 3 B 8 LYS C 212 ASN C 217 -1 N ASN C 217 O ARG C 227 SHEET 4 B 8 PHE C 246 LEU C 250 -1 O PHE C 246 N VAL C 213 SHEET 5 B 8 THR C 273 CYS C 278 -1 O LYS C 275 N HIS C 249 SHEET 6 B 8 LEU C 288 ASP C 294 -1 O LEU C 288 N VAL C 274 SHEET 7 B 8 LYS C 311 LEU C 316 -1 O ALA C 313 N ARG C 291 SHEET 8 B 8 TRP C 354 GLU C 368 -1 O TRP C 354 N CYS C 312 SHEET 1 C 8 ASN C 235 SER C 239 0 SHEET 2 C 8 ARG C 227 GLU C 232 -1 N GLU C 232 O ASN C 235 SHEET 3 C 8 LYS C 212 ASN C 217 -1 N ASN C 217 O ARG C 227 SHEET 4 C 8 TRP C 354 GLU C 368 -1 O THR C 355 N PHE C 216 SHEET 5 C 8 LYS C 311 LEU C 316 -1 N CYS C 312 O TRP C 354 SHEET 6 C 8 LEU C 288 ASP C 294 -1 N ARG C 291 O ALA C 313 SHEET 7 C 8 THR C 297 LEU C 299 -1 O LEU C 299 N LYS C 292 SHEET 8 C 8 LYS C 345 MET C 347 -1 O GLU C 346 N ALA C 298 SHEET 1 D 3 VAL C 81 GLN C 83 0 SHEET 2 D 3 ILE C 187 ILE C 190 1 O ILE C 190 N ALA C 82 SHEET 3 D 3 HIS C 164 PHE C 165 -1 N PHE C 165 O ILE C 187 SHEET 1 E 4 GLN C 139 LEU C 141 0 SHEET 2 E 4 PRO C 125 GLY C 130 -1 N ALA C 127 O LEU C 141 SHEET 3 E 4 SER C 168 TYR C 173 -1 O PHE C 172 N CYS C 126 SHEET 4 E 4 ASP C 178 LEU C 183 -1 O PHE C 182 N VAL C 169 SHEET 1 F 2 MET C 322 SER C 327 0 SHEET 2 F 2 ARG C 330 GLN C 335 -1 O ILE C 332 N CYS C 325 SHEET 1 G 4 VAL C 382 LEU C 388 0 SHEET 2 G 4 MET C 396 GLN C 402 -1 O GLU C 398 N GLN C 387 SHEET 3 G 4 SER C 426 VAL C 430 -1 O MET C 427 N LEU C 399 SHEET 4 G 4 THR C 419 CYS C 423 -1 N MET C 420 O LEU C 428 CISPEP 1 CYS C 94 PRO C 95 0 -1.48 CISPEP 2 SER C 134 ASP C 135 0 -3.69 CISPEP 3 SER C 194 LYS C 195 0 27.85 CISPEP 4 LYS C 195 LYS C 196 0 7.91 CISPEP 5 THR C 378 PRO C 379 0 -16.80 CISPEP 6 GLY C 390 GLY C 391 0 0.57 SITE 1 AC1 5 THR C 211 LYS C 212 THR C 359 ASP C 360 SITE 2 AC1 5 HOH C 497 SITE 1 AC2 4 GLU C 120 GLN C 121 GLN C 124 GLN C 241 SITE 1 AC3 5 ALA C 375 ASN C 407 ARG C 456 ASN C 457 SITE 2 AC3 5 ASP C 458 SITE 1 AC4 3 ARG C 162 HIS C 164 MET C 166 SITE 1 AC5 5 CYS C 126 ALA C 127 GLN C 140 LEU C 141 SITE 2 AC5 5 HOH C 589 SITE 1 AC6 6 PHE C 182 LEU C 183 TYR C 364 THR C 378 SITE 2 AC6 6 ASN C 403 HOH C 547 SITE 1 AC7 9 DC A 8 DC A 9 DG B 8 DG B 9 SITE 2 AC7 9 DG B 10 TYR C 86 ARG C 91 LYS C 192 SITE 3 AC7 9 HOH C 486 SITE 1 AC8 5 TYR C 100 HIS C 230 GLN C 242 TRP C 243 SITE 2 AC8 5 HOH C 594 SITE 1 AC9 3 GLN C 112 ARG C 115 ASP C 116 SITE 1 BC1 8 GLY C 130 ILE C 131 GLY C 132 ASN C 133 SITE 2 BC1 8 SER C 134 ASP C 135 MET C 138 SER C 168 SITE 1 BC2 3 GLN C 72 GLY C 105 GLU C 368 SITE 1 BC3 5 GLU C 120 GLU C 232 GLY C 233 ARG C 442 SITE 2 BC3 5 HOH C 503 CRYST1 66.769 95.388 113.695 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008795 0.00000