data_3C2I # _entry.id 3C2I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3C2I pdb_00003c2i 10.2210/pdb3c2i/pdb NDB PD1080 ? ? RCSB RCSB046258 ? ? WWPDB D_1000046258 ? ? # _pdbx_database_status.entry_id 3C2I _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-01-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ho, K.L.' 1 'McNae, I.W.' 2 'Schmiedeberg, L.' 3 'Klose, R.J.' 4 'Bird, A.P.' 5 'Walkinshaw, M.D.' 6 # _citation.id primary _citation.title 'MeCP2 binding to DNA depends upon hydration at methyl-CpG' _citation.journal_abbrev Mol.Cell _citation.journal_volume 29 _citation.page_first 525 _citation.page_last 531 _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18313390 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2007.12.028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ho, K.L.' 1 ? primary 'McNae, I.W.' 2 ? primary 'Schmiedeberg, L.' 3 ? primary 'Klose, R.J.' 4 ? primary 'Bird, A.P.' 5 ? primary 'Walkinshaw, M.D.' 6 ? # _cell.length_a 79.710 _cell.length_b 53.600 _cell.length_c 65.730 _cell.angle_alpha 90.000 _cell.angle_beta 132.100 _cell.angle_gamma 90.000 _cell.entry_id 3C2I _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3C2I _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding protein 2' 11281.381 1 ? 'A140(MSE)' 'UNP residues 77-167, Human MeCP2 MBD domain' ? 2 polymer syn ;DNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3') ; 6138.003 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3') ; 6156.032 1 ? ? ? ? 4 water nat water 18.015 47 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MeCP-2 protein, MeCP2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;ASASPKQRRSIIRDRGP(MSE)YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELI(MSE)YFEKVGDT SLDPNDFDFTVTGRGSPSRHHHHHH ; ;ASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDTSLDPNDFD FTVTGRGSPSRHHHHHH ; A ? 2 polydeoxyribonucleotide no yes ;(DT)(DC)(DT)(DG)(DG)(DA)(DA)(5CM)(DG)(DG)(DA)(DA)(DT)(DT)(DC)(DT)(DT)(DC)(DT) (DA) ; TCTGGAACGGAATTCTTCTA B ? 3 polydeoxyribonucleotide no yes ;(DA)(DT)(DA)(DG)(DA)(DA)(DG)(DA)(DA)(DT)(DT)(DC)(5CM)(DG)(DT)(DT)(DC)(DC)(DA) (DG) ; ATAGAAGAATTCCGTTCCAG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 ALA n 1 4 SER n 1 5 PRO n 1 6 LYS n 1 7 GLN n 1 8 ARG n 1 9 ARG n 1 10 SER n 1 11 ILE n 1 12 ILE n 1 13 ARG n 1 14 ASP n 1 15 ARG n 1 16 GLY n 1 17 PRO n 1 18 MSE n 1 19 TYR n 1 20 ASP n 1 21 ASP n 1 22 PRO n 1 23 THR n 1 24 LEU n 1 25 PRO n 1 26 GLU n 1 27 GLY n 1 28 TRP n 1 29 THR n 1 30 ARG n 1 31 LYS n 1 32 LEU n 1 33 LYS n 1 34 GLN n 1 35 ARG n 1 36 LYS n 1 37 SER n 1 38 GLY n 1 39 ARG n 1 40 SER n 1 41 ALA n 1 42 GLY n 1 43 LYS n 1 44 TYR n 1 45 ASP n 1 46 VAL n 1 47 TYR n 1 48 LEU n 1 49 ILE n 1 50 ASN n 1 51 PRO n 1 52 GLN n 1 53 GLY n 1 54 LYS n 1 55 ALA n 1 56 PHE n 1 57 ARG n 1 58 SER n 1 59 LYS n 1 60 VAL n 1 61 GLU n 1 62 LEU n 1 63 ILE n 1 64 MSE n 1 65 TYR n 1 66 PHE n 1 67 GLU n 1 68 LYS n 1 69 VAL n 1 70 GLY n 1 71 ASP n 1 72 THR n 1 73 SER n 1 74 LEU n 1 75 ASP n 1 76 PRO n 1 77 ASN n 1 78 ASP n 1 79 PHE n 1 80 ASP n 1 81 PHE n 1 82 THR n 1 83 VAL n 1 84 THR n 1 85 GLY n 1 86 ARG n 1 87 GLY n 1 88 SER n 1 89 PRO n 1 90 SER n 1 91 ARG n 1 92 HIS n 1 93 HIS n 1 94 HIS n 1 95 HIS n 1 96 HIS n 1 97 HIS n 2 1 DT n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 5CM n 2 9 DG n 2 10 DG n 2 11 DA n 2 12 DA n 2 13 DT n 2 14 DT n 2 15 DC n 2 16 DT n 2 17 DT n 2 18 DC n 2 19 DT n 2 20 DA n 3 1 DA n 3 2 DT n 3 3 DA n 3 4 DG n 3 5 DA n 3 6 DA n 3 7 DG n 3 8 DA n 3 9 DA n 3 10 DT n 3 11 DT n 3 12 DC n 3 13 5CM n 3 14 DG n 3 15 DT n 3 16 DT n 3 17 DC n 3 18 DC n 3 19 DA n 3 20 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene MECP2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLys' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'synthetic oligonucleotide' 3 1 sample ? ? ? ? ? 'synthetic oligonucleotide' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MECP2_HUMAN P51608 1 ;ASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFD FTVTGRGSPSR ; 77 ? 2 PDB 3C2I 3C2I 2 TCTGGAACGGAATTCTTCTA 1 ? 3 PDB 3C2I 3C2I 3 ATAGAAGAATTCCGTTCCAG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3C2I A 1 ? 91 ? P51608 77 ? 167 ? 77 167 2 2 3C2I B 1 ? 20 ? 3C2I 1 ? 20 ? 1 20 3 3 3C2I C 1 ? 20 ? 3C2I 21 ? 40 ? 21 40 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3C2I MSE A 64 ? UNP P51608 ALA 140 'engineered mutation' 140 1 1 3C2I HIS A 92 ? UNP P51608 ? ? 'expression tag' 168 2 1 3C2I HIS A 93 ? UNP P51608 ? ? 'expression tag' 169 3 1 3C2I HIS A 94 ? UNP P51608 ? ? 'expression tag' 170 4 1 3C2I HIS A 95 ? UNP P51608 ? ? 'expression tag' 171 5 1 3C2I HIS A 96 ? UNP P51608 ? ? 'expression tag' 172 6 1 3C2I HIS A 97 ? UNP P51608 ? ? 'expression tag' 173 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3C2I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.pdbx_details ;26% PEG2000, 0.2M Ammonium acetate, 0.01M Mg acetate, 0.05M Na cacodylate pH6.5, 0.002M DTT, VAPOR DIFFUSION, HANGING DROP, temperature 290K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 PEG2000 ? ? ? 1 2 1 'Ammonium acetate' ? ? ? 1 3 1 'Mg acetate' ? ? ? 1 4 1 'Na cacodylate' ? ? ? 1 5 1 HOH ? ? ? 1 6 2 PEG2000 ? ? ? 1 7 2 'Ammonium acetate' ? ? ? 1 8 2 'Mg acetate' ? ? ? 1 9 2 'Na cacodylate' ? ? ? 1 10 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-08-07 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator silicon _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_wavelength_list 0.97800 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 # _reflns.entry_id 3C2I _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 48.795 _reflns.number_obs 7122 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_netI_over_sigmaI 3.100 _reflns.pdbx_Rsym_value 0.075 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 98.500 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 7122 _reflns.B_iso_Wilson_estimate 84.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.50 2.64 ? 5055 ? 0.377 2.0 0.377 ? 5.30 ? 950 90.70 1 1 2.64 2.80 ? 7069 ? 0.312 2.3 0.312 ? 7.10 ? 1000 99.90 2 1 2.80 2.99 ? 6863 ? 0.205 3.6 0.205 ? 7.50 ? 921 100.00 3 1 2.99 3.23 ? 6483 ? 0.095 2.1 0.095 ? 7.40 ? 871 100.00 4 1 3.23 3.54 ? 5886 ? 0.076 2.1 0.076 ? 7.40 ? 791 99.90 5 1 3.54 3.95 ? 5433 ? 0.069 6.2 0.069 ? 7.40 ? 730 100.00 6 1 3.95 4.56 ? 4710 ? 0.062 9.9 0.062 ? 7.40 ? 636 100.00 7 1 4.56 5.59 ? 4123 ? 0.069 8.4 0.069 ? 7.40 ? 560 100.00 8 1 5.59 7.91 ? 3118 ? 0.060 7.7 0.060 ? 7.30 ? 429 100.00 9 1 7.91 25.66 ? 1567 ? 0.056 9.6 0.056 ? 6.70 ? 234 96.40 10 1 # _refine.entry_id 3C2I _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 23.480 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.530 _refine.ls_number_reflns_obs 7115 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.276 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 331 _refine.B_iso_mean 59.076 _refine.aniso_B[1][1] 0.290 _refine.aniso_B[2][2] 0.300 _refine.aniso_B[3][3] -0.490 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.070 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.pdbx_overall_ESU_R 0.651 _refine.pdbx_overall_ESU_R_Free 0.325 _refine.overall_SU_ML 0.266 _refine.overall_SU_B 24.894 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0.00 _refine.ls_number_reflns_all 7115 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 584 _refine_hist.pdbx_number_atoms_nucleic_acid 816 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 1447 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 23.480 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1512 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2212 1.848 2.628 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 71 5.524 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29 35.425 22.759 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 107 20.454 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 21.077 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 237 0.078 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 870 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 551 0.219 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 893 0.317 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 91 0.189 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 29 0.231 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.129 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 363 0.693 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 576 0.898 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1553 1.001 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1636 1.579 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.380 _refine_ls_shell.number_reflns_R_work 442 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.428 _refine_ls_shell.R_factor_R_free 0.429 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 464 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3C2I _struct.title 'The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3C2I _struct_keywords.text ;water mediated recognition, protein-methylated DNA complex, Asx-ST-motif, Disease mutation, DNA-binding, Nucleus, Phosphoprotein, Repressor, Transcription regulator ; _struct_keywords.pdbx_keywords 'Transcription regulator' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 58 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 70 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 134 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 146 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 17 C ? ? ? 1_555 A MSE 18 N ? ? A PRO 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 18 C ? ? ? 1_555 A TYR 19 N ? ? A MSE 94 A TYR 95 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? A ILE 63 C ? ? ? 1_555 A MSE 64 N ? ? A ILE 139 A MSE 140 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 64 C ? ? ? 1_555 A TYR 65 N ? ? A MSE 140 A TYR 141 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? B DA 7 "O3'" ? ? ? 1_555 B 5CM 8 P ? ? B DA 7 B 5CM 8 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale6 covale both ? B 5CM 8 "O3'" ? ? ? 1_555 B DG 9 P ? ? B 5CM 8 B DG 9 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale7 covale both ? C DC 12 "O3'" ? ? ? 1_555 C 5CM 13 P ? ? C DC 32 C 5CM 33 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale8 covale both ? C 5CM 13 "O3'" ? ? ? 1_555 C DG 14 P ? ? C 5CM 33 C DG 34 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 20 N1 ? ? B DC 2 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 20 O6 ? ? B DC 2 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 20 N2 ? ? B DC 2 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 19 N1 ? ? B DT 3 C DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 19 N6 ? ? B DT 3 C DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 18 N3 ? ? B DG 4 C DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 18 O2 ? ? B DG 4 C DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 18 N4 ? ? B DG 4 C DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 17 N3 ? ? B DG 5 C DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 17 O2 ? ? B DG 5 C DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 17 N4 ? ? B DG 5 C DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 16 N3 ? ? B DA 6 C DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 16 O4 ? ? B DA 6 C DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 15 N3 ? ? B DA 7 C DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 15 O4 ? ? B DA 7 C DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B 5CM 8 N3 ? ? ? 1_555 C DG 14 N1 ? ? B 5CM 8 C DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B 5CM 8 N4 ? ? ? 1_555 C DG 14 O6 ? ? B 5CM 8 C DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B 5CM 8 O2 ? ? ? 1_555 C DG 14 N2 ? ? B 5CM 8 C DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C 5CM 13 N3 ? ? B DG 9 C 5CM 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C 5CM 13 O2 ? ? B DG 9 C 5CM 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C 5CM 13 N4 ? ? B DG 9 C 5CM 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 10 C DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 10 C DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 10 C DC 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 11 C DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 11 C DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 12 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 12 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 13 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 13 C DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 13 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 13 C DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DT 14 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 14 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DT 14 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 14 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 15 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 15 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 15 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 15 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 15 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 15 C DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DT 16 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 16 C DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DT 16 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 16 C DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DT 17 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 17 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DT 17 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 17 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 18 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 18 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DC 18 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 18 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DC 18 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 18 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DT 19 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 19 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DT 19 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 19 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DA 20 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 20 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DA 20 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 20 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 29 ? GLN A 34 ? THR A 105 GLN A 110 A 2 TYR A 44 ? ILE A 49 ? TYR A 120 ILE A 125 A 3 ALA A 55 ? PHE A 56 ? ALA A 131 PHE A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 29 ? N THR A 105 O ILE A 49 ? O ILE A 125 A 2 3 N LEU A 48 ? N LEU A 124 O PHE A 56 ? O PHE A 132 # _atom_sites.entry_id 3C2I _atom_sites.fract_transf_matrix[1][1] 0.012545 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011336 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018657 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020504 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 77 ? ? ? A . n A 1 2 SER 2 78 ? ? ? A . n A 1 3 ALA 3 79 ? ? ? A . n A 1 4 SER 4 80 ? ? ? A . n A 1 5 PRO 5 81 ? ? ? A . n A 1 6 LYS 6 82 ? ? ? A . n A 1 7 GLN 7 83 ? ? ? A . n A 1 8 ARG 8 84 ? ? ? A . n A 1 9 ARG 9 85 ? ? ? A . n A 1 10 SER 10 86 ? ? ? A . n A 1 11 ILE 11 87 ? ? ? A . n A 1 12 ILE 12 88 ? ? ? A . n A 1 13 ARG 13 89 ? ? ? A . n A 1 14 ASP 14 90 ? ? ? A . n A 1 15 ARG 15 91 91 ARG ARG A . n A 1 16 GLY 16 92 92 GLY GLY A . n A 1 17 PRO 17 93 93 PRO PRO A . n A 1 18 MSE 18 94 94 MSE MSE A . n A 1 19 TYR 19 95 95 TYR TYR A . n A 1 20 ASP 20 96 96 ASP ASP A . n A 1 21 ASP 21 97 97 ASP ASP A . n A 1 22 PRO 22 98 98 PRO PRO A . n A 1 23 THR 23 99 99 THR THR A . n A 1 24 LEU 24 100 100 LEU LEU A . n A 1 25 PRO 25 101 101 PRO PRO A . n A 1 26 GLU 26 102 102 GLU GLU A . n A 1 27 GLY 27 103 103 GLY GLY A . n A 1 28 TRP 28 104 104 TRP TRP A . n A 1 29 THR 29 105 105 THR THR A . n A 1 30 ARG 30 106 106 ARG ARG A . n A 1 31 LYS 31 107 107 LYS LYS A . n A 1 32 LEU 32 108 108 LEU LEU A . n A 1 33 LYS 33 109 109 LYS LYS A . n A 1 34 GLN 34 110 110 GLN GLN A . n A 1 35 ARG 35 111 111 ARG ARG A . n A 1 36 LYS 36 112 112 LYS LYS A . n A 1 37 SER 37 113 113 SER SER A . n A 1 38 GLY 38 114 114 GLY GLY A . n A 1 39 ARG 39 115 115 ARG ARG A . n A 1 40 SER 40 116 116 SER SER A . n A 1 41 ALA 41 117 117 ALA ALA A . n A 1 42 GLY 42 118 118 GLY GLY A . n A 1 43 LYS 43 119 119 LYS LYS A . n A 1 44 TYR 44 120 120 TYR TYR A . n A 1 45 ASP 45 121 121 ASP ASP A . n A 1 46 VAL 46 122 122 VAL VAL A . n A 1 47 TYR 47 123 123 TYR TYR A . n A 1 48 LEU 48 124 124 LEU LEU A . n A 1 49 ILE 49 125 125 ILE ILE A . n A 1 50 ASN 50 126 126 ASN ASN A . n A 1 51 PRO 51 127 127 PRO PRO A . n A 1 52 GLN 52 128 128 GLN GLN A . n A 1 53 GLY 53 129 129 GLY GLY A . n A 1 54 LYS 54 130 130 LYS LYS A . n A 1 55 ALA 55 131 131 ALA ALA A . n A 1 56 PHE 56 132 132 PHE PHE A . n A 1 57 ARG 57 133 133 ARG ARG A . n A 1 58 SER 58 134 134 SER SER A . n A 1 59 LYS 59 135 135 LYS LYS A . n A 1 60 VAL 60 136 136 VAL VAL A . n A 1 61 GLU 61 137 137 GLU GLU A . n A 1 62 LEU 62 138 138 LEU LEU A . n A 1 63 ILE 63 139 139 ILE ILE A . n A 1 64 MSE 64 140 140 MSE MSE A . n A 1 65 TYR 65 141 141 TYR TYR A . n A 1 66 PHE 66 142 142 PHE PHE A . n A 1 67 GLU 67 143 143 GLU GLU A . n A 1 68 LYS 68 144 144 LYS LYS A . n A 1 69 VAL 69 145 145 VAL VAL A . n A 1 70 GLY 70 146 146 GLY GLY A . n A 1 71 ASP 71 147 147 ASP ASP A . n A 1 72 THR 72 148 148 THR THR A . n A 1 73 SER 73 149 149 SER SER A . n A 1 74 LEU 74 150 150 LEU LEU A . n A 1 75 ASP 75 151 151 ASP ASP A . n A 1 76 PRO 76 152 152 PRO PRO A . n A 1 77 ASN 77 153 153 ASN ASN A . n A 1 78 ASP 78 154 154 ASP ASP A . n A 1 79 PHE 79 155 155 PHE PHE A . n A 1 80 ASP 80 156 156 ASP ASP A . n A 1 81 PHE 81 157 157 PHE PHE A . n A 1 82 THR 82 158 158 THR THR A . n A 1 83 VAL 83 159 159 VAL VAL A . n A 1 84 THR 84 160 160 THR THR A . n A 1 85 GLY 85 161 161 GLY GLY A . n A 1 86 ARG 86 162 162 ARG ARG A . n A 1 87 GLY 87 163 ? ? ? A . n A 1 88 SER 88 164 ? ? ? A . n A 1 89 PRO 89 165 ? ? ? A . n A 1 90 SER 90 166 ? ? ? A . n A 1 91 ARG 91 167 ? ? ? A . n A 1 92 HIS 92 168 ? ? ? A . n A 1 93 HIS 93 169 ? ? ? A . n A 1 94 HIS 94 170 ? ? ? A . n A 1 95 HIS 95 171 ? ? ? A . n A 1 96 HIS 96 172 ? ? ? A . n A 1 97 HIS 97 173 ? ? ? A . n B 2 1 DT 1 1 1 DT DT B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 5CM 8 8 8 5CM 5CM B . n B 2 9 DG 9 9 9 DG DG B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DA 11 11 11 DA DA B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DT 13 13 13 DT DT B . n B 2 14 DT 14 14 14 DT DT B . n B 2 15 DC 15 15 15 DC DC B . n B 2 16 DT 16 16 16 DT DT B . n B 2 17 DT 17 17 17 DT DT B . n B 2 18 DC 18 18 18 DC DC B . n B 2 19 DT 19 19 19 DT DT B . n B 2 20 DA 20 20 20 DA DA B . n C 3 1 DA 1 21 21 DA DA C . n C 3 2 DT 2 22 22 DT DT C . n C 3 3 DA 3 23 23 DA DA C . n C 3 4 DG 4 24 24 DG DG C . n C 3 5 DA 5 25 25 DA DA C . n C 3 6 DA 6 26 26 DA DA C . n C 3 7 DG 7 27 27 DG DG C . n C 3 8 DA 8 28 28 DA DA C . n C 3 9 DA 9 29 29 DA DA C . n C 3 10 DT 10 30 30 DT DT C . n C 3 11 DT 11 31 31 DT DT C . n C 3 12 DC 12 32 32 DC DC C . n C 3 13 5CM 13 33 33 5CM 5CM C . n C 3 14 DG 14 34 34 DG DG C . n C 3 15 DT 15 35 35 DT DT C . n C 3 16 DT 16 36 36 DT DT C . n C 3 17 DC 17 37 37 DC DC C . n C 3 18 DC 18 38 38 DC DC C . n C 3 19 DA 19 39 39 DA DA C . n C 3 20 DG 20 40 40 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 176 3 HOH HOH A . D 4 HOH 2 177 5 HOH HOH A . D 4 HOH 3 178 6 HOH HOH A . D 4 HOH 4 179 9 HOH HOH A . D 4 HOH 5 180 12 HOH HOH A . D 4 HOH 6 181 20 HOH HOH A . D 4 HOH 7 182 21 HOH HOH A . D 4 HOH 8 183 22 HOH HOH A . D 4 HOH 9 184 23 HOH HOH A . D 4 HOH 10 185 28 HOH HOH A . D 4 HOH 11 186 33 HOH HOH A . D 4 HOH 12 187 34 HOH HOH A . D 4 HOH 13 188 37 HOH HOH A . D 4 HOH 14 189 40 HOH HOH A . D 4 HOH 15 190 41 HOH HOH A . D 4 HOH 16 191 43 HOH HOH A . D 4 HOH 17 192 45 HOH HOH A . E 4 HOH 1 21 1 HOH HOH B . E 4 HOH 2 22 4 HOH HOH B . E 4 HOH 3 23 13 HOH HOH B . E 4 HOH 4 24 14 HOH HOH B . E 4 HOH 5 25 15 HOH HOH B . E 4 HOH 6 26 17 HOH HOH B . E 4 HOH 7 27 18 HOH HOH B . E 4 HOH 8 29 11 HOH HOH B . E 4 HOH 9 30 7 HOH HOH B . E 4 HOH 10 31 30 HOH HOH B . E 4 HOH 11 32 24 HOH HOH B . E 4 HOH 12 33 46 HOH HOH B . E 4 HOH 13 174 19 HOH HOH B . E 4 HOH 14 175 47 HOH HOH B . F 4 HOH 1 41 2 HOH HOH C . F 4 HOH 2 42 8 HOH HOH C . F 4 HOH 3 43 10 HOH HOH C . F 4 HOH 4 44 16 HOH HOH C . F 4 HOH 5 45 39 HOH HOH C . F 4 HOH 6 46 25 HOH HOH C . F 4 HOH 7 47 26 HOH HOH C . F 4 HOH 8 48 27 HOH HOH C . F 4 HOH 9 49 29 HOH HOH C . F 4 HOH 10 50 31 HOH HOH C . F 4 HOH 11 51 32 HOH HOH C . F 4 HOH 12 52 35 HOH HOH C . F 4 HOH 13 53 36 HOH HOH C . F 4 HOH 14 54 38 HOH HOH C . F 4 HOH 15 55 42 HOH HOH C . F 4 HOH 16 56 44 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 18 A MSE 94 ? MET SELENOMETHIONINE 2 A MSE 64 A MSE 140 ? MET SELENOMETHIONINE 3 B 5CM 8 B 5CM 8 ? DC ? 4 C 5CM 13 C 5CM 33 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4520 ? 1 MORE -12.7 ? 1 'SSA (A^2)' 10880 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-01-11 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso 1 Se 1.023 0.837 0.365 0.147 59.731 2 Se 0.861 0.971 0.024 0.052 60.000 # loop_ _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom 1000.00 9.13 330 0.440 9.13 5.72 590 0.500 5.72 4.46 759 0.450 4.46 3.77 905 0.380 3.77 3.33 1004 0.290 3.33 3.01 1129 0.190 3.01 2.77 1190 0.110 2.77 2.58 1208 0.060 # _pdbx_phasing_dm.entry_id 3C2I _pdbx_phasing_dm.fom_acentric 0.530 _pdbx_phasing_dm.fom_centric 0.550 _pdbx_phasing_dm.fom 0.530 _pdbx_phasing_dm.reflns_acentric 6648 _pdbx_phasing_dm.reflns_centric 467 _pdbx_phasing_dm.reflns 7115 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 7.100 25.656 ? ? 0.950 0.870 0.940 261 56 317 4.500 7.100 ? ? 0.910 0.730 0.900 883 89 972 3.600 4.500 ? ? 0.850 0.760 0.840 1131 91 1222 3.100 3.600 ? ? 0.650 0.540 0.640 1136 71 1207 2.700 3.100 ? ? 0.300 0.270 0.300 2038 114 2152 2.500 2.700 ? ? 0.140 0.150 0.140 1199 46 1245 # _phasing.method SAD # _phasing_MAD.entry_id 3C2I _phasing_MAD.pdbx_d_res_high 2.50 _phasing_MAD.pdbx_d_res_low 1000.00 _phasing_MAD.pdbx_reflns 7115 _phasing_MAD.pdbx_fom 0.250 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'A.G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 2 SOLVE 2.11 19-June-2006 package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE 2.11 24-June-2006 package 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 18 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 18 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.382 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.037 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? N9 B DA 11 ? ? 103.74 108.00 -4.26 0.70 N 2 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9 B DA 12 ? ? 103.44 108.00 -4.56 0.70 N 3 1 "O4'" C DA 21 ? ? "C1'" C DA 21 ? ? N9 C DA 21 ? ? 100.95 108.00 -7.05 0.70 N 4 1 "O4'" C DT 22 ? ? "C1'" C DT 22 ? ? N1 C DT 22 ? ? 110.39 108.30 2.09 0.30 N 5 1 "O4'" C DG 24 ? ? "C1'" C DG 24 ? ? N9 C DG 24 ? ? 111.98 108.30 3.68 0.30 N 6 1 "O4'" C DT 30 ? ? "C1'" C DT 30 ? ? N1 C DT 30 ? ? 101.10 108.00 -6.90 0.70 N 7 1 "C3'" C DT 30 ? ? "O3'" C DT 30 ? ? P C DT 31 ? ? 127.76 119.70 8.06 1.20 Y 8 1 "C3'" C DT 31 ? ? "O3'" C DT 31 ? ? P C DC 32 ? ? 129.81 119.70 10.11 1.20 Y 9 1 "O4'" C DC 32 ? ? "C1'" C DC 32 ? ? N1 C DC 32 ? ? 113.33 108.30 5.03 0.30 N 10 1 C6 C DT 36 ? ? C5 C DT 36 ? ? C7 C DT 36 ? ? 119.08 122.90 -3.82 0.60 N 11 1 "O4'" C DG 40 ? ? "C1'" C DG 40 ? ? N9 C DG 40 ? ? 111.74 108.30 3.44 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 126 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -41.97 _pdbx_validate_torsion.psi 152.46 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 77 ? A ALA 1 2 1 Y 1 A SER 78 ? A SER 2 3 1 Y 1 A ALA 79 ? A ALA 3 4 1 Y 1 A SER 80 ? A SER 4 5 1 Y 1 A PRO 81 ? A PRO 5 6 1 Y 1 A LYS 82 ? A LYS 6 7 1 Y 1 A GLN 83 ? A GLN 7 8 1 Y 1 A ARG 84 ? A ARG 8 9 1 Y 1 A ARG 85 ? A ARG 9 10 1 Y 1 A SER 86 ? A SER 10 11 1 Y 1 A ILE 87 ? A ILE 11 12 1 Y 1 A ILE 88 ? A ILE 12 13 1 Y 1 A ARG 89 ? A ARG 13 14 1 Y 1 A ASP 90 ? A ASP 14 15 1 Y 1 A GLY 163 ? A GLY 87 16 1 Y 1 A SER 164 ? A SER 88 17 1 Y 1 A PRO 165 ? A PRO 89 18 1 Y 1 A SER 166 ? A SER 90 19 1 Y 1 A ARG 167 ? A ARG 91 20 1 Y 1 A HIS 168 ? A HIS 92 21 1 Y 1 A HIS 169 ? A HIS 93 22 1 Y 1 A HIS 170 ? A HIS 94 23 1 Y 1 A HIS 171 ? A HIS 95 24 1 Y 1 A HIS 172 ? A HIS 96 25 1 Y 1 A HIS 173 ? A HIS 97 # _ndb_struct_conf_na.entry_id 3C2I _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 20 1_555 -0.081 -0.184 0.119 -13.134 -5.465 -1.661 1 B_DC2:DG40_C B 2 ? C 40 ? 19 1 1 B DT 3 1_555 C DA 19 1_555 -0.230 -0.375 0.051 -1.291 -3.289 1.832 2 B_DT3:DA39_C B 3 ? C 39 ? 20 1 1 B DG 4 1_555 C DC 18 1_555 -0.436 -0.190 0.155 9.161 -7.591 5.688 3 B_DG4:DC38_C B 4 ? C 38 ? 19 1 1 B DG 5 1_555 C DC 17 1_555 -0.700 -0.416 -0.017 6.212 -10.624 0.412 4 B_DG5:DC37_C B 5 ? C 37 ? 19 1 1 B DA 6 1_555 C DT 16 1_555 0.266 -0.354 0.052 -4.051 -9.789 -0.170 5 B_DA6:DT36_C B 6 ? C 36 ? 20 1 1 B DA 7 1_555 C DT 15 1_555 -0.077 -0.227 0.328 -5.756 -8.833 -0.979 6 B_DA7:DT35_C B 7 ? C 35 ? 20 1 1 B 5CM 8 1_555 C DG 14 1_555 0.318 -0.283 0.101 -8.530 -4.548 -3.419 7 B_5CM8:DG34_C B 8 ? C 34 ? 19 1 1 B DG 9 1_555 C 5CM 13 1_555 -0.111 -0.081 -0.118 -9.472 -7.544 1.665 8 B_DG9:5CM33_C B 9 ? C 33 ? 19 1 1 B DG 10 1_555 C DC 12 1_555 -0.436 -0.272 -0.005 3.496 -2.442 1.278 9 B_DG10:DC32_C B 10 ? C 32 ? 19 1 1 B DA 11 1_555 C DT 11 1_555 0.191 -0.163 -0.174 1.276 -19.739 -2.191 10 B_DA11:DT31_C B 11 ? C 31 ? 20 1 1 B DA 12 1_555 C DT 10 1_555 -0.005 -0.322 0.060 0.756 -14.197 0.447 11 B_DA12:DT30_C B 12 ? C 30 ? 20 1 1 B DT 13 1_555 C DA 9 1_555 -0.014 -0.287 0.088 -2.221 -15.431 -2.372 12 B_DT13:DA29_C B 13 ? C 29 ? 20 1 1 B DT 14 1_555 C DA 8 1_555 0.163 -0.095 0.004 -1.905 -15.022 2.355 13 B_DT14:DA28_C B 14 ? C 28 ? 20 1 1 B DC 15 1_555 C DG 7 1_555 0.131 -0.004 0.357 -10.111 -14.195 2.413 14 B_DC15:DG27_C B 15 ? C 27 ? 19 1 1 B DT 16 1_555 C DA 6 1_555 -0.511 -0.241 0.167 -6.045 -10.410 -1.264 15 B_DT16:DA26_C B 16 ? C 26 ? 20 1 1 B DT 17 1_555 C DA 5 1_555 -0.058 -0.502 -0.016 -5.072 -19.431 -2.561 16 B_DT17:DA25_C B 17 ? C 25 ? 20 1 1 B DC 18 1_555 C DG 4 1_555 0.963 -0.334 0.086 -5.821 -5.351 5.495 17 B_DC18:DG24_C B 18 ? C 24 ? 19 1 1 B DT 19 1_555 C DA 3 1_555 -0.194 0.071 0.331 -11.672 -20.254 7.235 18 B_DT19:DA23_C B 19 ? C 23 ? 20 1 1 B DA 20 1_555 C DT 2 1_555 0.072 -0.272 -0.009 -7.117 -8.099 3.443 19 B_DA20:DT22_C B 20 ? C 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 20 1_555 B DT 3 1_555 C DA 19 1_555 -0.319 -0.600 3.030 0.955 0.920 28.954 -1.385 0.832 2.998 1.839 -1.909 28.983 1 BB_DC2DT3:DA39DG40_CC B 2 ? C 40 ? B 3 ? C 39 ? 1 B DT 3 1_555 C DA 19 1_555 B DG 4 1_555 C DC 18 1_555 0.448 0.892 3.084 0.624 3.433 34.365 0.994 -0.663 3.163 5.792 -1.052 34.536 2 BB_DT3DG4:DC38DA39_CC B 3 ? C 39 ? B 4 ? C 38 ? 1 B DG 4 1_555 C DC 18 1_555 B DG 5 1_555 C DC 17 1_555 -0.430 0.274 3.362 -1.742 4.407 32.731 -0.291 0.450 3.387 7.769 3.072 33.063 3 BB_DG4DG5:DC37DC38_CC B 4 ? C 38 ? B 5 ? C 37 ? 1 B DG 5 1_555 C DC 17 1_555 B DA 6 1_555 C DT 16 1_555 -0.209 -0.331 3.446 -2.999 2.923 39.933 -0.833 -0.055 3.420 4.266 4.377 40.144 4 BB_DG5DA6:DT36DC37_CC B 5 ? C 37 ? B 6 ? C 36 ? 1 B DA 6 1_555 C DT 16 1_555 B DA 7 1_555 C DT 15 1_555 -0.429 -0.541 3.254 -2.320 -3.010 36.645 -0.445 0.362 3.306 -4.772 3.677 36.835 5 BB_DA6DA7:DT35DT36_CC B 6 ? C 36 ? B 7 ? C 35 ? 1 B DA 7 1_555 C DT 15 1_555 B 5CM 8 1_555 C DG 14 1_555 -0.224 -0.749 3.409 2.189 -3.460 37.228 -0.690 0.650 3.444 -5.399 -3.417 37.445 6 BB_DA75CM8:DG34DT35_CC B 7 ? C 35 ? B 8 ? C 34 ? 1 B 5CM 8 1_555 C DG 14 1_555 B DG 9 1_555 C 5CM 13 1_555 0.270 0.516 3.373 2.009 1.435 42.231 0.563 -0.161 3.397 1.990 -2.786 42.300 7 BB_5CM8DG9:5CM33DG34_CC B 8 ? C 34 ? B 9 ? C 33 ? 1 B DG 9 1_555 C 5CM 13 1_555 B DG 10 1_555 C DC 12 1_555 0.581 0.538 2.975 -0.907 3.090 27.380 0.439 -1.422 2.996 6.500 1.908 27.565 8 BB_DG9DG10:DC325CM33_CC B 9 ? C 33 ? B 10 ? C 32 ? 1 B DG 10 1_555 C DC 12 1_555 B DA 11 1_555 C DT 11 1_555 -1.474 1.054 3.425 -1.736 2.323 40.293 1.248 1.927 3.536 3.367 2.517 40.393 9 BB_DG10DA11:DT31DC32_CC B 10 ? C 32 ? B 11 ? C 31 ? 1 B DA 11 1_555 C DT 11 1_555 B DA 12 1_555 C DT 10 1_555 0.323 -0.072 3.158 -0.286 -3.642 37.993 0.334 -0.530 3.149 -5.578 0.438 38.162 10 BB_DA11DA12:DT30DT31_CC B 11 ? C 31 ? B 12 ? C 30 ? 1 B DA 12 1_555 C DT 10 1_555 B DT 13 1_555 C DA 9 1_555 0.168 -0.501 3.356 0.807 -1.298 32.378 -0.662 -0.155 3.377 -2.326 -1.447 32.413 11 BB_DA12DT13:DA29DT30_CC B 12 ? C 30 ? B 13 ? C 29 ? 1 B DT 13 1_555 C DA 9 1_555 B DT 14 1_555 C DA 8 1_555 0.094 -0.495 3.145 1.276 -0.343 35.677 -0.760 0.024 3.151 -0.560 -2.083 35.701 12 BB_DT13DT14:DA28DA29_CC B 13 ? C 29 ? B 14 ? C 28 ? 1 B DT 14 1_555 C DA 8 1_555 B DC 15 1_555 C DG 7 1_555 -0.025 -0.432 3.493 -1.933 -0.847 39.251 -0.535 -0.209 3.498 -1.260 2.875 39.305 13 BB_DT14DC15:DG27DA28_CC B 14 ? C 28 ? B 15 ? C 27 ? 1 B DC 15 1_555 C DG 7 1_555 B DT 16 1_555 C DA 6 1_555 -0.654 -0.125 3.239 -1.469 -1.865 28.602 0.166 0.990 3.269 -3.767 2.968 28.699 14 BB_DC15DT16:DA26DG27_CC B 15 ? C 27 ? B 16 ? C 26 ? 1 B DT 16 1_555 C DA 6 1_555 B DT 17 1_555 C DA 5 1_555 0.004 0.735 3.166 1.512 -4.295 41.614 1.459 0.146 3.077 -6.024 -2.121 41.852 15 BB_DT16DT17:DA25DA26_CC B 16 ? C 26 ? B 17 ? C 25 ? 1 B DT 17 1_555 C DA 5 1_555 B DC 18 1_555 C DG 4 1_555 0.910 1.113 3.394 0.931 -2.102 42.639 1.747 -1.153 3.356 -2.888 -1.279 42.698 16 BB_DT17DC18:DG24DA25_CC B 17 ? C 25 ? B 18 ? C 24 ? 1 B DC 18 1_555 C DG 4 1_555 B DT 19 1_555 C DA 3 1_555 -0.887 0.798 3.448 -1.161 -0.722 29.739 1.713 1.470 3.459 -1.405 2.260 29.770 17 BB_DC18DT19:DA23DG24_CC B 18 ? C 24 ? B 19 ? C 23 ? 1 B DT 19 1_555 C DA 3 1_555 B DA 20 1_555 C DT 2 1_555 0.917 1.763 3.224 2.931 -2.213 45.587 2.458 -0.930 3.189 -2.851 -3.776 45.727 18 BB_DT19DA20:DT22DA23_CC B 19 ? C 23 ? B 20 ? C 22 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #