data_3CCG # _entry.id 3CCG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CCG pdb_00003ccg 10.2210/pdb3ccg/pdb RCSB RCSB046608 ? ? WWPDB D_1000046608 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 367850 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3CCG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-02-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of predicted HD superfamily hydrolase involved in NAD metabolism (NP_347894.1) from Clostridium acetobutylicum at 1.50 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3CCG _cell.length_a 90.540 _cell.length_b 36.320 _cell.length_c 72.600 _cell.angle_alpha 90.000 _cell.angle_beta 125.460 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CCG _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HD superfamily hydrolase' 21759.070 1 ? ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 2 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 198 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)WSYDKITDYL(MSE)NNLGEKRYKHSLGV(MSE)DTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICT NEGYELGDEDIRNSYLLHGLAGRILAKKVIGIDDEDVLNAIEFHTTGRPN(MSE)SLLEKIIYIADYIEPGREFKGVDEL RKAADEDLNKALL(MSE)SFDNTIKFVIDKGGFLHHNTIEARNYLISRKG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMWSYDKITDYLMNNLGEKRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIR NSYLLHGLAGRILAKKVIGIDDEDVLNAIEFHTTGRPNMSLLEKIIYIADYIEPGREFKGVDELRKAADEDLNKALLMSF DNTIKFVIDKGGFLHHNTIEARNYLISRKG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 367850 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 TRP n 1 4 SER n 1 5 TYR n 1 6 ASP n 1 7 LYS n 1 8 ILE n 1 9 THR n 1 10 ASP n 1 11 TYR n 1 12 LEU n 1 13 MSE n 1 14 ASN n 1 15 ASN n 1 16 LEU n 1 17 GLY n 1 18 GLU n 1 19 LYS n 1 20 ARG n 1 21 TYR n 1 22 LYS n 1 23 HIS n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 VAL n 1 28 MSE n 1 29 ASP n 1 30 THR n 1 31 ALA n 1 32 VAL n 1 33 ARG n 1 34 LEU n 1 35 ALA n 1 36 GLY n 1 37 ILE n 1 38 TYR n 1 39 ASN n 1 40 GLU n 1 41 ASP n 1 42 THR n 1 43 GLU n 1 44 LYS n 1 45 ALA n 1 46 ARG n 1 47 ILE n 1 48 ALA n 1 49 GLY n 1 50 LEU n 1 51 VAL n 1 52 HIS n 1 53 ASP n 1 54 CYS n 1 55 ALA n 1 56 LYS n 1 57 LYS n 1 58 LEU n 1 59 PRO n 1 60 GLY n 1 61 GLU n 1 62 LYS n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 THR n 1 69 ASN n 1 70 GLU n 1 71 GLY n 1 72 TYR n 1 73 GLU n 1 74 LEU n 1 75 GLY n 1 76 ASP n 1 77 GLU n 1 78 ASP n 1 79 ILE n 1 80 ARG n 1 81 ASN n 1 82 SER n 1 83 TYR n 1 84 LEU n 1 85 LEU n 1 86 HIS n 1 87 GLY n 1 88 LEU n 1 89 ALA n 1 90 GLY n 1 91 ARG n 1 92 ILE n 1 93 LEU n 1 94 ALA n 1 95 LYS n 1 96 LYS n 1 97 VAL n 1 98 ILE n 1 99 GLY n 1 100 ILE n 1 101 ASP n 1 102 ASP n 1 103 GLU n 1 104 ASP n 1 105 VAL n 1 106 LEU n 1 107 ASN n 1 108 ALA n 1 109 ILE n 1 110 GLU n 1 111 PHE n 1 112 HIS n 1 113 THR n 1 114 THR n 1 115 GLY n 1 116 ARG n 1 117 PRO n 1 118 ASN n 1 119 MSE n 1 120 SER n 1 121 LEU n 1 122 LEU n 1 123 GLU n 1 124 LYS n 1 125 ILE n 1 126 ILE n 1 127 TYR n 1 128 ILE n 1 129 ALA n 1 130 ASP n 1 131 TYR n 1 132 ILE n 1 133 GLU n 1 134 PRO n 1 135 GLY n 1 136 ARG n 1 137 GLU n 1 138 PHE n 1 139 LYS n 1 140 GLY n 1 141 VAL n 1 142 ASP n 1 143 GLU n 1 144 LEU n 1 145 ARG n 1 146 LYS n 1 147 ALA n 1 148 ALA n 1 149 ASP n 1 150 GLU n 1 151 ASP n 1 152 LEU n 1 153 ASN n 1 154 LYS n 1 155 ALA n 1 156 LEU n 1 157 LEU n 1 158 MSE n 1 159 SER n 1 160 PHE n 1 161 ASP n 1 162 ASN n 1 163 THR n 1 164 ILE n 1 165 LYS n 1 166 PHE n 1 167 VAL n 1 168 ILE n 1 169 ASP n 1 170 LYS n 1 171 GLY n 1 172 GLY n 1 173 PHE n 1 174 LEU n 1 175 HIS n 1 176 HIS n 1 177 ASN n 1 178 THR n 1 179 ILE n 1 180 GLU n 1 181 ALA n 1 182 ARG n 1 183 ASN n 1 184 TYR n 1 185 LEU n 1 186 ILE n 1 187 SER n 1 188 ARG n 1 189 LYS n 1 190 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Clostridium _entity_src_gen.pdbx_gene_src_gene 'NP_347894.1, CA_C1263' _entity_src_gen.gene_src_species 'Clostridium acetobutylicum' _entity_src_gen.gene_src_strain 'DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium acetobutylicum ATCC 824' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q97JL1_CLOAB _struct_ref.pdbx_db_accession Q97JL1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MWSYDKITDYLMNNLGEKRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRN SYLLHGLAGRILAKKVIGIDDEDVLNAIEFHTTGRPNMSLLEKIIYIADYIEPGREFKGVDELRKAADEDLNKALLMSFD NTIKFVIDKGGFLHHNTIEARNYLISRKG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CCG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 190 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q97JL1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 189 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3CCG _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97JL1 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3CCG # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;NANODROP, 0.2M Mg formate, 20.0% PEG 3350, 0.001M Spermine tetra-HCl, No Buffer pH 5.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-02-01 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97922 1.0 3 0.97874 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97922, 0.97874' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3CCG _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 25.872 _reflns.number_obs 30979 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_netI_over_sigmaI 11.530 _reflns.percent_possible_obs 98.300 _reflns.B_iso_Wilson_estimate 17.062 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.50 1.55 10409 ? 5469 0.362 2.1 ? ? ? ? ? 96.70 1 1 1.55 1.62 12822 ? 6692 0.271 2.7 ? ? ? ? ? 97.80 2 1 1.62 1.69 10764 ? 5622 0.199 3.6 ? ? ? ? ? 98.30 3 1 1.69 1.78 11514 ? 6010 0.158 4.5 ? ? ? ? ? 98.70 4 1 1.78 1.89 11230 ? 5863 0.116 6.4 ? ? ? ? ? 98.80 5 1 1.89 2.04 11789 ? 6153 0.074 9.4 ? ? ? ? ? 99.00 6 1 2.04 2.24 11229 ? 5835 0.047 14.4 ? ? ? ? ? 99.00 7 1 2.24 2.56 11466 ? 5953 0.036 18.4 ? ? ? ? ? 99.00 8 1 2.56 3.23 11670 ? 6030 0.028 23.6 ? ? ? ? ? 98.60 9 1 3.23 25.872 11506 ? 5914 0.022 30.1 ? ? ? ? ? 97.10 10 1 # _refine.entry_id 3CCG _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 25.872 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.560 _refine.ls_number_reflns_obs 30979 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. IRON HAS BEEN MODELED IN THE PUTATIVE ACTIVE SITE BASED ON AN X-RAY FLUORESCENCE SCAN FOR METAL, ANOMALOUS DIFFERENCE FOURIERS, AND COORDINATION GEOMETRY. 5. PHOSPHATE IS MODELED BASED ON ELECTRON DENSITY AND PROPOSED FUNCTION. ; _refine.ls_R_factor_obs 0.182 _refine.ls_R_factor_R_work 0.180 _refine.ls_R_factor_R_free 0.217 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1560 _refine.B_iso_mean 15.356 _refine.aniso_B[1][1] -0.750 _refine.aniso_B[2][2] 0.290 _refine.aniso_B[3][3] -0.700 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -1.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.pdbx_overall_ESU_R 0.079 _refine.pdbx_overall_ESU_R_Free 0.082 _refine.overall_SU_ML 0.053 _refine.overall_SU_B 1.381 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1472 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 198 _refine_hist.number_atoms_total 1677 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 25.872 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1639 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1103 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2227 1.563 1.965 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2694 1.065 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 214 3.972 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 77 33.877 24.156 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 295 11.479 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 13.723 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 241 0.078 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1897 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 341 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1012 1.826 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 417 0.527 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1634 2.848 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 627 4.390 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 593 6.330 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.560 _refine_ls_shell.number_reflns_R_work 2152 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.231 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 109 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2261 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CCG _struct.title ;Crystal structure of predicted HD superfamily hydrolase involved in NAD metabolism (NP_347894.1) from Clostridium acetobutylicum at 1.50 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_347894.1, predicted HD superfamily hydrolase involved in NAD metabolism, HD domain, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3CCG # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? ASN A 39 ? SER A 3 ASN A 38 1 ? 36 HELX_P HELX_P2 2 ASP A 41 ? HIS A 52 ? ASP A 40 HIS A 51 1 ? 12 HELX_P HELX_P3 3 PRO A 59 ? GLU A 70 ? PRO A 58 GLU A 69 1 ? 12 HELX_P HELX_P4 4 GLY A 75 ? ARG A 80 ? GLY A 74 ARG A 79 1 ? 6 HELX_P HELX_P5 5 LEU A 85 ? VAL A 97 ? LEU A 84 VAL A 96 1 ? 13 HELX_P HELX_P6 6 ASP A 102 ? PHE A 111 ? ASP A 101 PHE A 110 1 ? 10 HELX_P HELX_P7 7 SER A 120 ? GLU A 133 ? SER A 119 GLU A 132 1 ? 14 HELX_P HELX_P8 8 GLY A 140 ? ASP A 151 ? GLY A 139 ASP A 150 1 ? 12 HELX_P HELX_P9 9 ASP A 151 ? GLY A 171 ? ASP A 150 GLY A 170 1 ? 21 HELX_P HELX_P10 10 HIS A 175 ? LYS A 189 ? HIS A 174 LYS A 188 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A TRP 3 N ? ? A MSE 1 A TRP 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A LEU 12 C ? ? ? 1_555 A MSE 13 N A ? A LEU 11 A MSE 12 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A LEU 12 C ? ? ? 1_555 A MSE 13 N B ? A LEU 11 A MSE 12 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A MSE 13 C A ? ? 1_555 A ASN 14 N A ? A MSE 12 A ASN 13 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A MSE 13 C B ? ? 1_555 A ASN 14 N B ? A MSE 12 A ASN 13 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A VAL 27 C ? ? ? 1_555 A MSE 28 N ? ? A VAL 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale8 covale both ? A MSE 28 C ? ? ? 1_555 A ASP 29 N ? ? A MSE 27 A ASP 28 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale9 covale both ? A ASN 118 C ? ? ? 1_555 A MSE 119 N ? ? A ASN 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale10 covale both ? A MSE 119 C ? ? ? 1_555 A SER 120 N ? ? A MSE 118 A SER 119 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? A LEU 157 C ? ? ? 1_555 A MSE 158 N A ? A LEU 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale both ? A LEU 157 C ? ? ? 1_555 A MSE 158 N B ? A LEU 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale13 covale both ? A MSE 158 C A ? ? 1_555 A SER 159 N ? ? A MSE 157 A SER 158 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale14 covale both ? A MSE 158 C B ? ? 1_555 A SER 159 N ? ? A MSE 157 A SER 158 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A HIS 23 NE2 ? ? ? 1_555 C FE . FE ? ? A HIS 22 A FE 191 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc2 metalc ? ? A HIS 52 NE2 ? ? ? 1_555 C FE . FE ? ? A HIS 51 A FE 191 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc3 metalc ? ? A ASP 53 OD1 ? ? ? 1_555 B FE . FE ? ? A ASP 52 A FE 190 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc4 metalc ? ? A ASP 53 OD2 ? ? ? 1_555 C FE . FE ? ? A ASP 52 A FE 191 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc5 metalc ? ? A HIS 86 NE2 ? ? ? 1_555 B FE . FE ? ? A HIS 85 A FE 190 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc6 metalc ? ? A HIS 112 NE2 ? ? ? 1_555 B FE . FE ? ? A HIS 111 A FE 190 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc7 metalc ? ? A ASP 130 OD1 ? ? ? 1_555 C FE . FE ? ? A ASP 129 A FE 191 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc8 metalc ? ? B FE . FE ? ? ? 1_555 D PO4 . O1 ? ? A FE 190 A PO4 192 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc9 metalc ? ? B FE . FE ? ? ? 1_555 E HOH . O ? ? A FE 190 A HOH 195 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc10 metalc ? ? B FE . FE ? ? ? 1_555 E HOH . O ? ? A FE 190 A HOH 199 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc11 metalc ? ? C FE . FE ? ? ? 1_555 D PO4 . O4 ? ? A FE 191 A PO4 192 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc12 metalc ? ? C FE . FE ? ? ? 1_555 E HOH . O ? ? A FE 191 A HOH 195 1_555 ? ? ? ? ? ? ? 1.711 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FE 190 ? 5 'BINDING SITE FOR RESIDUE FE A 190' AC2 Software A FE 191 ? 5 'BINDING SITE FOR RESIDUE FE A 191' AC3 Software A PO4 192 ? 15 'BINDING SITE FOR RESIDUE PO4 A 192' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 53 ? ASP A 52 . ? 1_555 ? 2 AC1 5 HIS A 86 ? HIS A 85 . ? 1_555 ? 3 AC1 5 HIS A 112 ? HIS A 111 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 195 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 199 . ? 1_555 ? 6 AC2 5 HIS A 23 ? HIS A 22 . ? 1_555 ? 7 AC2 5 HIS A 52 ? HIS A 51 . ? 1_555 ? 8 AC2 5 ASP A 53 ? ASP A 52 . ? 1_555 ? 9 AC2 5 ASP A 130 ? ASP A 129 . ? 1_555 ? 10 AC2 5 HOH E . ? HOH A 195 . ? 1_555 ? 11 AC3 15 ARG A 20 ? ARG A 19 . ? 1_555 ? 12 AC3 15 HIS A 23 ? HIS A 22 . ? 1_555 ? 13 AC3 15 ASP A 53 ? ASP A 52 . ? 1_555 ? 14 AC3 15 LYS A 56 ? LYS A 55 . ? 1_555 ? 15 AC3 15 GLU A 61 ? GLU A 60 . ? 4_555 ? 16 AC3 15 GLU A 65 ? GLU A 64 . ? 4_555 ? 17 AC3 15 HIS A 86 ? HIS A 85 . ? 1_555 ? 18 AC3 15 ASP A 130 ? ASP A 129 . ? 1_555 ? 19 AC3 15 ARG A 136 ? ARG A 135 . ? 1_555 ? 20 AC3 15 HOH E . ? HOH A 195 . ? 1_555 ? 21 AC3 15 HOH E . ? HOH A 199 . ? 1_555 ? 22 AC3 15 HOH E . ? HOH A 201 . ? 4_555 ? 23 AC3 15 HOH E . ? HOH A 246 . ? 4_555 ? 24 AC3 15 HOH E . ? HOH A 250 . ? 1_555 ? 25 AC3 15 HOH E . ? HOH A 261 . ? 4_555 ? # _atom_sites.entry_id 3CCG _atom_sites.fract_transf_matrix[1][1] 0.011045 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007867 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027533 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016911 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C FE N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 TRP 3 2 2 TRP TRP A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 TYR 5 4 4 TYR TYR A . n A 1 6 ASP 6 5 5 ASP ASP A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 THR 9 8 8 THR THR A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 TYR 11 10 10 TYR TYR A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 MSE 13 12 12 MSE MSE A . n A 1 14 ASN 14 13 13 ASN ASN A . n A 1 15 ASN 15 14 14 ASN ASN A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 ARG 20 19 19 ARG ARG A . n A 1 21 TYR 21 20 20 TYR TYR A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 HIS 23 22 22 HIS HIS A . n A 1 24 SER 24 23 23 SER SER A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 MSE 28 27 27 MSE MSE A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 THR 30 29 29 THR THR A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 VAL 32 31 31 VAL VAL A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 LEU 34 33 33 LEU LEU A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 TYR 38 37 37 TYR TYR A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 LYS 44 43 43 LYS LYS A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 CYS 54 53 53 CYS CYS A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 PRO 59 58 58 PRO PRO A . n A 1 60 GLY 60 59 59 GLY GLY A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 ILE 63 62 62 ILE ILE A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 CYS 67 66 66 CYS CYS A . n A 1 68 THR 68 67 67 THR THR A . n A 1 69 ASN 69 68 68 ASN ASN A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 GLY 75 74 74 GLY GLY A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 TYR 83 82 82 TYR TYR A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 HIS 86 85 85 HIS HIS A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 ARG 91 90 90 ARG ARG A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 LYS 96 95 95 LYS LYS A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 ASN 107 106 106 ASN ASN A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 GLU 110 109 109 GLU GLU A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 HIS 112 111 111 HIS HIS A . n A 1 113 THR 113 112 112 THR THR A . n A 1 114 THR 114 113 113 THR THR A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 ARG 116 115 115 ARG ARG A . n A 1 117 PRO 117 116 116 PRO PRO A . n A 1 118 ASN 118 117 117 ASN ASN A . n A 1 119 MSE 119 118 118 MSE MSE A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 GLU 123 122 122 GLU GLU A . n A 1 124 LYS 124 123 123 LYS LYS A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 TYR 127 126 126 TYR TYR A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 ASP 130 129 129 ASP ASP A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 GLU 133 132 132 GLU GLU A . n A 1 134 PRO 134 133 133 PRO PRO A . n A 1 135 GLY 135 134 134 GLY GLY A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 GLU 137 136 136 GLU GLU A . n A 1 138 PHE 138 137 137 PHE PHE A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 GLY 140 139 139 GLY GLY A . n A 1 141 VAL 141 140 140 VAL VAL A . n A 1 142 ASP 142 141 141 ASP ASP A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 ARG 145 144 144 ARG ARG A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 ALA 148 147 147 ALA ALA A . n A 1 149 ASP 149 148 148 ASP ASP A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 ASN 153 152 152 ASN ASN A . n A 1 154 LYS 154 153 153 LYS LYS A . n A 1 155 ALA 155 154 154 ALA ALA A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 MSE 158 157 157 MSE MSE A . n A 1 159 SER 159 158 158 SER SER A . n A 1 160 PHE 160 159 159 PHE PHE A . n A 1 161 ASP 161 160 160 ASP ASP A . n A 1 162 ASN 162 161 161 ASN ASN A . n A 1 163 THR 163 162 162 THR THR A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 LYS 165 164 164 LYS LYS A . n A 1 166 PHE 166 165 165 PHE PHE A . n A 1 167 VAL 167 166 166 VAL VAL A . n A 1 168 ILE 168 167 167 ILE ILE A . n A 1 169 ASP 169 168 168 ASP ASP A . n A 1 170 LYS 170 169 169 LYS LYS A . n A 1 171 GLY 171 170 170 GLY GLY A . n A 1 172 GLY 172 171 171 GLY GLY A . n A 1 173 PHE 173 172 172 PHE PHE A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 HIS 175 174 174 HIS HIS A . n A 1 176 HIS 176 175 175 HIS HIS A . n A 1 177 ASN 177 176 176 ASN ASN A . n A 1 178 THR 178 177 177 THR THR A . n A 1 179 ILE 179 178 178 ILE ILE A . n A 1 180 GLU 180 179 179 GLU GLU A . n A 1 181 ALA 181 180 180 ALA ALA A . n A 1 182 ARG 182 181 181 ARG ARG A . n A 1 183 ASN 183 182 182 ASN ASN A . n A 1 184 TYR 184 183 183 TYR TYR A . n A 1 185 LEU 185 184 184 LEU LEU A . n A 1 186 ILE 186 185 185 ILE ILE A . n A 1 187 SER 187 186 186 SER SER A . n A 1 188 ARG 188 187 187 ARG ARG A . n A 1 189 LYS 189 188 188 LYS LYS A . n A 1 190 GLY 190 189 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 190 1 FE FE A . C 2 FE 1 191 2 FE FE A . D 3 PO4 1 192 3 PO4 PO4 A . E 4 HOH 1 193 4 HOH HOH A . E 4 HOH 2 194 5 HOH HOH A . E 4 HOH 3 195 6 HOH HOH A . E 4 HOH 4 196 7 HOH HOH A . E 4 HOH 5 197 8 HOH HOH A . E 4 HOH 6 198 9 HOH HOH A . E 4 HOH 7 199 10 HOH HOH A . E 4 HOH 8 200 11 HOH HOH A . E 4 HOH 9 201 12 HOH HOH A . E 4 HOH 10 202 13 HOH HOH A . E 4 HOH 11 203 14 HOH HOH A . E 4 HOH 12 204 15 HOH HOH A . E 4 HOH 13 205 16 HOH HOH A . E 4 HOH 14 206 17 HOH HOH A . E 4 HOH 15 207 18 HOH HOH A . E 4 HOH 16 208 19 HOH HOH A . E 4 HOH 17 209 20 HOH HOH A . E 4 HOH 18 210 21 HOH HOH A . E 4 HOH 19 211 22 HOH HOH A . E 4 HOH 20 212 23 HOH HOH A . E 4 HOH 21 213 24 HOH HOH A . E 4 HOH 22 214 25 HOH HOH A . E 4 HOH 23 215 26 HOH HOH A . E 4 HOH 24 216 27 HOH HOH A . E 4 HOH 25 217 28 HOH HOH A . E 4 HOH 26 218 29 HOH HOH A . E 4 HOH 27 219 30 HOH HOH A . E 4 HOH 28 220 31 HOH HOH A . E 4 HOH 29 221 32 HOH HOH A . E 4 HOH 30 222 33 HOH HOH A . E 4 HOH 31 223 34 HOH HOH A . E 4 HOH 32 224 35 HOH HOH A . E 4 HOH 33 225 36 HOH HOH A . E 4 HOH 34 226 37 HOH HOH A . E 4 HOH 35 227 38 HOH HOH A . E 4 HOH 36 228 39 HOH HOH A . E 4 HOH 37 229 40 HOH HOH A . E 4 HOH 38 230 41 HOH HOH A . E 4 HOH 39 231 42 HOH HOH A . E 4 HOH 40 232 43 HOH HOH A . E 4 HOH 41 233 44 HOH HOH A . E 4 HOH 42 234 45 HOH HOH A . E 4 HOH 43 235 46 HOH HOH A . E 4 HOH 44 236 47 HOH HOH A . E 4 HOH 45 237 48 HOH HOH A . E 4 HOH 46 238 49 HOH HOH A . E 4 HOH 47 239 50 HOH HOH A . E 4 HOH 48 240 51 HOH HOH A . E 4 HOH 49 241 52 HOH HOH A . E 4 HOH 50 242 53 HOH HOH A . E 4 HOH 51 243 54 HOH HOH A . E 4 HOH 52 244 55 HOH HOH A . E 4 HOH 53 245 56 HOH HOH A . E 4 HOH 54 246 57 HOH HOH A . E 4 HOH 55 247 58 HOH HOH A . E 4 HOH 56 248 59 HOH HOH A . E 4 HOH 57 249 60 HOH HOH A . E 4 HOH 58 250 61 HOH HOH A . E 4 HOH 59 251 62 HOH HOH A . E 4 HOH 60 252 63 HOH HOH A . E 4 HOH 61 253 64 HOH HOH A . E 4 HOH 62 254 65 HOH HOH A . E 4 HOH 63 255 66 HOH HOH A . E 4 HOH 64 256 67 HOH HOH A . E 4 HOH 65 257 68 HOH HOH A . E 4 HOH 66 258 69 HOH HOH A . E 4 HOH 67 259 70 HOH HOH A . E 4 HOH 68 260 71 HOH HOH A . E 4 HOH 69 261 72 HOH HOH A . E 4 HOH 70 262 73 HOH HOH A . E 4 HOH 71 263 74 HOH HOH A . E 4 HOH 72 264 75 HOH HOH A . E 4 HOH 73 265 76 HOH HOH A . E 4 HOH 74 266 77 HOH HOH A . E 4 HOH 75 267 78 HOH HOH A . E 4 HOH 76 268 79 HOH HOH A . E 4 HOH 77 269 80 HOH HOH A . E 4 HOH 78 270 81 HOH HOH A . E 4 HOH 79 271 82 HOH HOH A . E 4 HOH 80 272 83 HOH HOH A . E 4 HOH 81 273 84 HOH HOH A . E 4 HOH 82 274 85 HOH HOH A . E 4 HOH 83 275 86 HOH HOH A . E 4 HOH 84 276 87 HOH HOH A . E 4 HOH 85 277 88 HOH HOH A . E 4 HOH 86 278 89 HOH HOH A . E 4 HOH 87 279 90 HOH HOH A . E 4 HOH 88 280 91 HOH HOH A . E 4 HOH 89 281 92 HOH HOH A . E 4 HOH 90 282 93 HOH HOH A . E 4 HOH 91 283 94 HOH HOH A . E 4 HOH 92 284 95 HOH HOH A . E 4 HOH 93 285 96 HOH HOH A . E 4 HOH 94 286 97 HOH HOH A . E 4 HOH 95 287 98 HOH HOH A . E 4 HOH 96 288 99 HOH HOH A . E 4 HOH 97 289 100 HOH HOH A . E 4 HOH 98 290 101 HOH HOH A . E 4 HOH 99 291 102 HOH HOH A . E 4 HOH 100 292 103 HOH HOH A . E 4 HOH 101 293 104 HOH HOH A . E 4 HOH 102 294 105 HOH HOH A . E 4 HOH 103 295 106 HOH HOH A . E 4 HOH 104 296 107 HOH HOH A . E 4 HOH 105 297 108 HOH HOH A . E 4 HOH 106 298 109 HOH HOH A . E 4 HOH 107 299 110 HOH HOH A . E 4 HOH 108 300 111 HOH HOH A . E 4 HOH 109 301 112 HOH HOH A . E 4 HOH 110 302 113 HOH HOH A . E 4 HOH 111 303 114 HOH HOH A . E 4 HOH 112 304 115 HOH HOH A . E 4 HOH 113 305 116 HOH HOH A . E 4 HOH 114 306 117 HOH HOH A . E 4 HOH 115 307 118 HOH HOH A . E 4 HOH 116 308 119 HOH HOH A . E 4 HOH 117 309 120 HOH HOH A . E 4 HOH 118 310 121 HOH HOH A . E 4 HOH 119 311 122 HOH HOH A . E 4 HOH 120 312 123 HOH HOH A . E 4 HOH 121 313 124 HOH HOH A . E 4 HOH 122 314 125 HOH HOH A . E 4 HOH 123 315 126 HOH HOH A . E 4 HOH 124 316 127 HOH HOH A . E 4 HOH 125 317 128 HOH HOH A . E 4 HOH 126 318 129 HOH HOH A . E 4 HOH 127 319 130 HOH HOH A . E 4 HOH 128 320 131 HOH HOH A . E 4 HOH 129 321 132 HOH HOH A . E 4 HOH 130 322 133 HOH HOH A . E 4 HOH 131 323 134 HOH HOH A . E 4 HOH 132 324 135 HOH HOH A . E 4 HOH 133 325 136 HOH HOH A . E 4 HOH 134 326 137 HOH HOH A . E 4 HOH 135 327 138 HOH HOH A . E 4 HOH 136 328 139 HOH HOH A . E 4 HOH 137 329 140 HOH HOH A . E 4 HOH 138 330 141 HOH HOH A . E 4 HOH 139 331 142 HOH HOH A . E 4 HOH 140 332 143 HOH HOH A . E 4 HOH 141 333 144 HOH HOH A . E 4 HOH 142 334 145 HOH HOH A . E 4 HOH 143 335 146 HOH HOH A . E 4 HOH 144 336 147 HOH HOH A . E 4 HOH 145 337 148 HOH HOH A . E 4 HOH 146 338 149 HOH HOH A . E 4 HOH 147 339 150 HOH HOH A . E 4 HOH 148 340 151 HOH HOH A . E 4 HOH 149 341 152 HOH HOH A . E 4 HOH 150 342 153 HOH HOH A . E 4 HOH 151 343 154 HOH HOH A . E 4 HOH 152 344 155 HOH HOH A . E 4 HOH 153 345 156 HOH HOH A . E 4 HOH 154 346 157 HOH HOH A . E 4 HOH 155 347 158 HOH HOH A . E 4 HOH 156 348 159 HOH HOH A . E 4 HOH 157 349 160 HOH HOH A . E 4 HOH 158 350 161 HOH HOH A . E 4 HOH 159 351 162 HOH HOH A . E 4 HOH 160 352 163 HOH HOH A . E 4 HOH 161 353 164 HOH HOH A . E 4 HOH 162 354 165 HOH HOH A . E 4 HOH 163 355 166 HOH HOH A . E 4 HOH 164 356 167 HOH HOH A . E 4 HOH 165 357 168 HOH HOH A . E 4 HOH 166 358 169 HOH HOH A . E 4 HOH 167 359 170 HOH HOH A . E 4 HOH 168 360 171 HOH HOH A . E 4 HOH 169 361 172 HOH HOH A . E 4 HOH 170 362 173 HOH HOH A . E 4 HOH 171 363 174 HOH HOH A . E 4 HOH 172 364 175 HOH HOH A . E 4 HOH 173 365 176 HOH HOH A . E 4 HOH 174 366 177 HOH HOH A . E 4 HOH 175 367 178 HOH HOH A . E 4 HOH 176 368 179 HOH HOH A . E 4 HOH 177 369 180 HOH HOH A . E 4 HOH 178 370 181 HOH HOH A . E 4 HOH 179 371 182 HOH HOH A . E 4 HOH 180 372 183 HOH HOH A . E 4 HOH 181 373 184 HOH HOH A . E 4 HOH 182 374 185 HOH HOH A . E 4 HOH 183 375 186 HOH HOH A . E 4 HOH 184 376 187 HOH HOH A . E 4 HOH 185 377 188 HOH HOH A . E 4 HOH 186 378 189 HOH HOH A . E 4 HOH 187 379 190 HOH HOH A . E 4 HOH 188 380 191 HOH HOH A . E 4 HOH 189 381 192 HOH HOH A . E 4 HOH 190 382 193 HOH HOH A . E 4 HOH 191 383 194 HOH HOH A . E 4 HOH 192 384 195 HOH HOH A . E 4 HOH 193 385 196 HOH HOH A . E 4 HOH 194 386 197 HOH HOH A . E 4 HOH 195 387 198 HOH HOH A . E 4 HOH 196 388 199 HOH HOH A . E 4 HOH 197 389 200 HOH HOH A . E 4 HOH 198 390 201 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 13 A MSE 12 ? MET SELENOMETHIONINE 3 A MSE 28 A MSE 27 ? MET SELENOMETHIONINE 4 A MSE 119 A MSE 118 ? MET SELENOMETHIONINE 5 A MSE 158 A MSE 157 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1390 ? 1 MORE -7.2 ? 1 'SSA (A^2)' 17530 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 23 ? A HIS 22 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 NE2 ? A HIS 52 ? A HIS 51 ? 1_555 97.5 ? 2 NE2 ? A HIS 23 ? A HIS 22 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 OD2 ? A ASP 53 ? A ASP 52 ? 1_555 90.1 ? 3 NE2 ? A HIS 52 ? A HIS 51 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 OD2 ? A ASP 53 ? A ASP 52 ? 1_555 82.6 ? 4 NE2 ? A HIS 23 ? A HIS 22 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 OD1 ? A ASP 130 ? A ASP 129 ? 1_555 77.5 ? 5 NE2 ? A HIS 52 ? A HIS 51 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 OD1 ? A ASP 130 ? A ASP 129 ? 1_555 96.6 ? 6 OD2 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 OD1 ? A ASP 130 ? A ASP 129 ? 1_555 167.4 ? 7 NE2 ? A HIS 23 ? A HIS 22 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O4 ? D PO4 . ? A PO4 192 ? 1_555 82.2 ? 8 NE2 ? A HIS 52 ? A HIS 51 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O4 ? D PO4 . ? A PO4 192 ? 1_555 173.4 ? 9 OD2 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O4 ? D PO4 . ? A PO4 192 ? 1_555 90.8 ? 10 OD1 ? A ASP 130 ? A ASP 129 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O4 ? D PO4 . ? A PO4 192 ? 1_555 89.8 ? 11 NE2 ? A HIS 23 ? A HIS 22 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 175.0 ? 12 NE2 ? A HIS 52 ? A HIS 51 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 83.9 ? 13 OD2 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 94.8 ? 14 OD1 ? A ASP 130 ? A ASP 129 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 97.7 ? 15 O4 ? D PO4 . ? A PO4 192 ? 1_555 FE ? C FE . ? A FE 191 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 97.0 ? 16 OD1 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 NE2 ? A HIS 86 ? A HIS 85 ? 1_555 86.7 ? 17 OD1 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 NE2 ? A HIS 112 ? A HIS 111 ? 1_555 90.7 ? 18 NE2 ? A HIS 86 ? A HIS 85 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 NE2 ? A HIS 112 ? A HIS 111 ? 1_555 93.6 ? 19 OD1 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O1 ? D PO4 . ? A PO4 192 ? 1_555 92.2 ? 20 NE2 ? A HIS 86 ? A HIS 85 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O1 ? D PO4 . ? A PO4 192 ? 1_555 93.1 ? 21 NE2 ? A HIS 112 ? A HIS 111 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O1 ? D PO4 . ? A PO4 192 ? 1_555 172.9 ? 22 OD1 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 89.0 ? 23 NE2 ? A HIS 86 ? A HIS 85 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 175.6 ? 24 NE2 ? A HIS 112 ? A HIS 111 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 87.5 ? 25 O1 ? D PO4 . ? A PO4 192 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 195 ? 1_555 86.1 ? 26 OD1 ? A ASP 53 ? A ASP 52 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 199 ? 1_555 176.6 ? 27 NE2 ? A HIS 86 ? A HIS 85 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 199 ? 1_555 94.4 ? 28 NE2 ? A HIS 112 ? A HIS 111 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 199 ? 1_555 92.4 ? 29 O1 ? D PO4 . ? A PO4 192 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 199 ? 1_555 84.5 ? 30 O ? E HOH . ? A HOH 195 ? 1_555 FE ? B FE . ? A FE 190 ? 1_555 O ? E HOH . ? A HOH 199 ? 1_555 89.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_conn_type 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.value' 25 5 'Structure model' '_struct_conn.conn_type_id' 26 5 'Structure model' '_struct_conn.id' 27 5 'Structure model' '_struct_conn.pdbx_dist_value' 28 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 30 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 31 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 5 'Structure model' '_struct_conn_type.id' 44 5 'Structure model' '_struct_ref_seq_dif.details' 45 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 46 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 47 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.0000 _pdbx_refine_tls.origin_y 0.0000 _pdbx_refine_tls.origin_z 0.0000 _pdbx_refine_tls.T[1][1] 0.0000 _pdbx_refine_tls.T[2][2] 0.0000 _pdbx_refine_tls.T[3][3] 0.0000 _pdbx_refine_tls.T[1][2] 0.0000 _pdbx_refine_tls.T[1][3] 0.0000 _pdbx_refine_tls.T[2][3] 0.0000 _pdbx_refine_tls.L[1][1] 0.0000 _pdbx_refine_tls.L[2][2] 0.0000 _pdbx_refine_tls.L[3][3] 0.0000 _pdbx_refine_tls.L[1][2] 0.0000 _pdbx_refine_tls.L[1][3] 0.0000 _pdbx_refine_tls.L[2][3] 0.0000 _pdbx_refine_tls.S[1][1] 0.0000 _pdbx_refine_tls.S[1][2] 0.0000 _pdbx_refine_tls.S[1][3] 0.0000 _pdbx_refine_tls.S[2][1] 0.0000 _pdbx_refine_tls.S[2][2] 0.0000 _pdbx_refine_tls.S[2][3] 0.0000 _pdbx_refine_tls.S[3][1] 0.0000 _pdbx_refine_tls.S[3][2] 0.0000 _pdbx_refine_tls.S[3][3] 0.0000 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 188 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 189 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3CCG _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHH. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OH A TYR 4 ? B OE2 A GLU 42 ? ? 1.83 2 1 O A HOH 201 ? ? O A HOH 261 ? ? 1.89 3 1 OE2 A GLU 64 ? A O A HOH 201 ? ? 2.03 4 1 O A HOH 201 ? ? O A HOH 245 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O3 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 PO4 _pdbx_validate_symm_contact.auth_seq_id_1 192 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 201 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.03 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TYR _pdbx_validate_rmsd_bond.auth_seq_id_1 82 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 CD1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TYR _pdbx_validate_rmsd_bond.auth_seq_id_2 82 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.301 _pdbx_validate_rmsd_bond.bond_target_value 1.387 _pdbx_validate_rmsd_bond.bond_deviation -0.086 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 80 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -115.85 _pdbx_validate_torsion.psi 74.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 17 ? CD ? A GLU 18 CD 2 1 Y 1 A GLU 17 ? OE1 ? A GLU 18 OE1 3 1 Y 1 A GLU 17 ? OE2 ? A GLU 18 OE2 4 1 Y 1 A LYS 18 ? CD ? A LYS 19 CD 5 1 Y 1 A LYS 18 ? CE ? A LYS 19 CE 6 1 Y 1 A LYS 18 ? NZ ? A LYS 19 NZ 7 1 Y 1 A LYS 21 ? CD ? A LYS 22 CD 8 1 Y 1 A LYS 21 ? CE ? A LYS 22 CE 9 1 Y 1 A LYS 21 ? NZ ? A LYS 22 NZ 10 1 Y 1 A GLU 72 ? CG ? A GLU 73 CG 11 1 Y 1 A GLU 72 ? CD ? A GLU 73 CD 12 1 Y 1 A GLU 72 ? OE1 ? A GLU 73 OE1 13 1 Y 1 A GLU 72 ? OE2 ? A GLU 73 OE2 14 1 Y 1 A GLU 76 ? CD ? A GLU 77 CD 15 1 Y 1 A GLU 76 ? OE1 ? A GLU 77 OE1 16 1 Y 1 A GLU 76 ? OE2 ? A GLU 77 OE2 17 1 Y 1 A ASN 80 ? CG ? A ASN 81 CG 18 1 Y 1 A ASN 80 ? OD1 ? A ASN 81 OD1 19 1 Y 1 A ASN 80 ? ND2 ? A ASN 81 ND2 20 1 Y 1 A LEU 84 ? N ? A LEU 85 N 21 1 Y 1 A GLU 102 ? CD ? A GLU 103 CD 22 1 Y 1 A GLU 102 ? OE1 ? A GLU 103 OE1 23 1 Y 1 A GLU 102 ? OE2 ? A GLU 103 OE2 24 1 Y 1 A LYS 138 ? CE ? A LYS 139 CE 25 1 Y 1 A LYS 138 ? NZ ? A LYS 139 NZ 26 1 Y 1 A ASP 141 ? CG ? A ASP 142 CG 27 1 Y 1 A ASP 141 ? OD1 ? A ASP 142 OD1 28 1 Y 1 A ASP 141 ? OD2 ? A ASP 142 OD2 29 1 Y 1 A LYS 145 ? CE ? A LYS 146 CE 30 1 Y 1 A LYS 145 ? NZ ? A LYS 146 NZ 31 1 Y 1 A LYS 153 ? NZ ? A LYS 154 NZ 32 1 Y 1 A ARG 187 ? CZ ? A ARG 188 CZ 33 1 Y 1 A ARG 187 ? NH1 ? A ARG 188 NH1 34 1 Y 1 A ARG 187 ? NH2 ? A ARG 188 NH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 189 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 190 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 'PHOSPHATE ION' PO4 4 water HOH #