data_3CCY # _entry.id 3CCY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3CCY RCSB RCSB046624 WWPDB D_1000046624 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC88698 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CCY _pdbx_database_status.recvd_initial_deposition_date 2008-02-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Li, H.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Li, H.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3CCY _cell.length_a 56.920 _cell.length_b 56.989 _cell.length_c 168.271 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CCY _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative TetR-family transcriptional regulator' 23646.992 1 ? ? ? ? 2 water nat water 18.015 115 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)ARTRSADYENIRDTIIERAAA(MSE)FARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRD(MSE)LTT HVDSLLERCRQVLYGSNEPKTRFLQIVKLFLEIYATSRDRHVV(MSE)LTCLDALPEDQRKALIAKQRELIAYVRDALLQ LRPD(MSE)AANRTLAHVDT(MSE)LFFG(MSE)INWTYTWYKADGSVSPDALAERTVQLFLDGYLNLLSA ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQV LYGSNEPKTRFLQIVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDT MLFFGMINWTYTWYKADGSVSPDALAERTVQLFLDGYLNLLSA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC88698 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 ARG n 1 7 THR n 1 8 ARG n 1 9 SER n 1 10 ALA n 1 11 ASP n 1 12 TYR n 1 13 GLU n 1 14 ASN n 1 15 ILE n 1 16 ARG n 1 17 ASP n 1 18 THR n 1 19 ILE n 1 20 ILE n 1 21 GLU n 1 22 ARG n 1 23 ALA n 1 24 ALA n 1 25 ALA n 1 26 MSE n 1 27 PHE n 1 28 ALA n 1 29 ARG n 1 30 GLN n 1 31 GLY n 1 32 TYR n 1 33 SER n 1 34 GLU n 1 35 THR n 1 36 SER n 1 37 ILE n 1 38 GLY n 1 39 ASP n 1 40 ILE n 1 41 ALA n 1 42 ARG n 1 43 ALA n 1 44 CYS n 1 45 GLU n 1 46 CYS n 1 47 SER n 1 48 LYS n 1 49 SER n 1 50 ARG n 1 51 LEU n 1 52 TYR n 1 53 HIS n 1 54 TYR n 1 55 PHE n 1 56 ASP n 1 57 SER n 1 58 LYS n 1 59 GLU n 1 60 ALA n 1 61 VAL n 1 62 LEU n 1 63 ARG n 1 64 ASP n 1 65 MSE n 1 66 LEU n 1 67 THR n 1 68 THR n 1 69 HIS n 1 70 VAL n 1 71 ASP n 1 72 SER n 1 73 LEU n 1 74 LEU n 1 75 GLU n 1 76 ARG n 1 77 CYS n 1 78 ARG n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 TYR n 1 83 GLY n 1 84 SER n 1 85 ASN n 1 86 GLU n 1 87 PRO n 1 88 LYS n 1 89 THR n 1 90 ARG n 1 91 PHE n 1 92 LEU n 1 93 GLN n 1 94 ILE n 1 95 VAL n 1 96 LYS n 1 97 LEU n 1 98 PHE n 1 99 LEU n 1 100 GLU n 1 101 ILE n 1 102 TYR n 1 103 ALA n 1 104 THR n 1 105 SER n 1 106 ARG n 1 107 ASP n 1 108 ARG n 1 109 HIS n 1 110 VAL n 1 111 VAL n 1 112 MSE n 1 113 LEU n 1 114 THR n 1 115 CYS n 1 116 LEU n 1 117 ASP n 1 118 ALA n 1 119 LEU n 1 120 PRO n 1 121 GLU n 1 122 ASP n 1 123 GLN n 1 124 ARG n 1 125 LYS n 1 126 ALA n 1 127 LEU n 1 128 ILE n 1 129 ALA n 1 130 LYS n 1 131 GLN n 1 132 ARG n 1 133 GLU n 1 134 LEU n 1 135 ILE n 1 136 ALA n 1 137 TYR n 1 138 VAL n 1 139 ARG n 1 140 ASP n 1 141 ALA n 1 142 LEU n 1 143 LEU n 1 144 GLN n 1 145 LEU n 1 146 ARG n 1 147 PRO n 1 148 ASP n 1 149 MSE n 1 150 ALA n 1 151 ALA n 1 152 ASN n 1 153 ARG n 1 154 THR n 1 155 LEU n 1 156 ALA n 1 157 HIS n 1 158 VAL n 1 159 ASP n 1 160 THR n 1 161 MSE n 1 162 LEU n 1 163 PHE n 1 164 PHE n 1 165 GLY n 1 166 MSE n 1 167 ILE n 1 168 ASN n 1 169 TRP n 1 170 THR n 1 171 TYR n 1 172 THR n 1 173 TRP n 1 174 TYR n 1 175 LYS n 1 176 ALA n 1 177 ASP n 1 178 GLY n 1 179 SER n 1 180 VAL n 1 181 SER n 1 182 PRO n 1 183 ASP n 1 184 ALA n 1 185 LEU n 1 186 ALA n 1 187 GLU n 1 188 ARG n 1 189 THR n 1 190 VAL n 1 191 GLN n 1 192 LEU n 1 193 PHE n 1 194 LEU n 1 195 ASP n 1 196 GLY n 1 197 TYR n 1 198 LEU n 1 199 ASN n 1 200 LEU n 1 201 LEU n 1 202 SER n 1 203 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bordetella _entity_src_gen.pdbx_gene_src_gene BPP2833 _entity_src_gen.gene_src_species 'Bordetella parapertussis' _entity_src_gen.gene_src_strain '12822 / NCTC 13253' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bordetella parapertussis 12822' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 257311 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-587 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7W6R8_BORPA _struct_ref.pdbx_db_accession Q7W6R8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYG SNEPKTRFLQIVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLF FGMINWTYTWYKADGSVSPDALAERTVQLFLDGYLNLLSA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CCY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 203 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7W6R8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 200 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 200 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3CCY SER A 1 ? UNP Q7W6R8 ? ? 'EXPRESSION TAG' -2 1 1 3CCY ASN A 2 ? UNP Q7W6R8 ? ? 'EXPRESSION TAG' -1 2 1 3CCY ALA A 3 ? UNP Q7W6R8 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3CCY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.89 _exptl_crystal.density_percent_sol 57.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '1.5M NH4Cl, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-12-17 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97904 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97904 # _reflns.entry_id 3CCY _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 29.0 _reflns.number_all 18617 _reflns.number_obs 18617 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.114 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.06 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.672 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.17 _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1505 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CCY _refine.ls_number_reflns_obs 17644 _refine.ls_number_reflns_all 17644 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.98 _refine.ls_d_res_high 2.01 _refine.ls_percent_reflns_obs 99.13 _refine.ls_R_factor_obs 0.20036 _refine.ls_R_factor_all 0.20036 _refine.ls_R_factor_R_work 0.19826 _refine.ls_R_factor_R_free 0.24183 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 957 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.928 _refine.B_iso_mean 40.686 _refine.aniso_B[1][1] -0.03 _refine.aniso_B[2][2] 0.33 _refine.aniso_B[3][3] -0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.161 _refine.pdbx_overall_ESU_R_Free 0.154 _refine.overall_SU_ML 0.098 _refine.overall_SU_B 6.706 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1553 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 115 _refine_hist.number_atoms_total 1668 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 28.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1622 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.437 1.965 ? 2201 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.157 5.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.311 22.375 ? 80 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.743 15.000 ? 296 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.879 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 250 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1224 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.232 0.200 ? 776 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 1117 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.148 0.200 ? 87 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.270 0.200 ? 50 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.127 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.082 1.500 ? 1013 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.524 2.000 ? 1575 'X-RAY DIFFRACTION' ? r_scbond_it 2.513 3.000 ? 703 'X-RAY DIFFRACTION' ? r_scangle_it 3.543 4.500 ? 620 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.01 _refine_ls_shell.d_res_low 2.06 _refine_ls_shell.number_reflns_R_work 1191 _refine_ls_shell.R_factor_R_work 0.231 _refine_ls_shell.percent_reflns_obs 91.35 _refine_ls_shell.R_factor_R_free 0.246 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1246 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CCY _struct.title 'Crystal structure of a TetR-family transcriptional regulator from Bordetella parapertussis 12822' _struct.pdbx_descriptor 'Putative TetR-family transcriptional regulator' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CCY _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text ;APC88698, TetR, Bordetella parapertussis 12822, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA-binding, Transcription, Transcription regulation, TRANSCRIPTION REGULATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 14 ? GLN A 30 ? ASN A 11 GLN A 27 1 ? 17 HELX_P HELX_P2 2 SER A 36 ? CYS A 44 ? SER A 33 CYS A 41 1 ? 9 HELX_P HELX_P3 3 SER A 47 ? TYR A 52 ? SER A 44 TYR A 49 5 ? 6 HELX_P HELX_P4 4 SER A 57 ? TYR A 82 ? SER A 54 TYR A 79 1 ? 26 HELX_P HELX_P5 5 GLU A 86 ? LEU A 116 ? GLU A 83 LEU A 113 1 ? 31 HELX_P HELX_P6 6 ASP A 117 ? LEU A 119 ? ASP A 114 LEU A 116 5 ? 3 HELX_P HELX_P7 7 GLU A 121 ? ARG A 146 ? GLU A 118 ARG A 143 1 ? 26 HELX_P HELX_P8 8 PRO A 147 ? ALA A 150 ? PRO A 144 ALA A 147 5 ? 4 HELX_P HELX_P9 9 ASN A 152 ? TRP A 169 ? ASN A 149 TRP A 166 1 ? 18 HELX_P HELX_P10 10 THR A 170 ? TRP A 173 ? THR A 167 TRP A 170 5 ? 4 HELX_P HELX_P11 11 SER A 181 ? GLY A 196 ? SER A 178 GLY A 193 1 ? 16 HELX_P HELX_P12 12 TYR A 197 ? LEU A 200 ? TYR A 194 LEU A 197 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 25 C ? ? ? 1_555 A MSE 26 N ? ? A ALA 22 A MSE 23 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 26 C ? ? ? 1_555 A PHE 27 N ? ? A MSE 23 A PHE 24 1_555 ? ? ? ? ? ? ? 1.336 ? covale3 covale ? ? A ASP 64 C ? ? ? 1_555 A MSE 65 N ? ? A ASP 61 A MSE 62 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 65 C ? ? ? 1_555 A LEU 66 N ? ? A MSE 62 A LEU 63 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale ? ? A VAL 111 C ? ? ? 1_555 A MSE 112 N ? ? A VAL 108 A MSE 109 1_555 ? ? ? ? ? ? ? 1.341 ? covale6 covale ? ? A MSE 112 C ? ? ? 1_555 A LEU 113 N ? ? A MSE 109 A LEU 110 1_555 ? ? ? ? ? ? ? 1.337 ? covale7 covale ? ? A ASP 148 C ? ? ? 1_555 A MSE 149 N ? ? A ASP 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 149 C ? ? ? 1_555 A ALA 150 N ? ? A MSE 146 A ALA 147 1_555 ? ? ? ? ? ? ? 1.323 ? covale9 covale ? ? A THR 160 C ? ? ? 1_555 A MSE 161 N ? ? A THR 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 161 C ? ? ? 1_555 A LEU 162 N ? ? A MSE 158 A LEU 159 1_555 ? ? ? ? ? ? ? 1.339 ? covale11 covale ? ? A GLY 165 C ? ? ? 1_555 A MSE 166 N ? ? A GLY 162 A MSE 163 1_555 ? ? ? ? ? ? ? 1.339 ? covale12 covale ? ? A MSE 166 C ? ? ? 1_555 A ILE 167 N ? ? A MSE 163 A ILE 164 1_555 ? ? ? ? ? ? ? 1.341 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3CCY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CCY _atom_sites.fract_transf_matrix[1][1] 0.017569 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017547 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005943 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 ARG 6 3 ? ? ? A . n A 1 7 THR 7 4 ? ? ? A . n A 1 8 ARG 8 5 ? ? ? A . n A 1 9 SER 9 6 ? ? ? A . n A 1 10 ALA 10 7 ? ? ? A . n A 1 11 ASP 11 8 ? ? ? A . n A 1 12 TYR 12 9 9 TYR TYR A . n A 1 13 GLU 13 10 10 GLU GLU A . n A 1 14 ASN 14 11 11 ASN ASN A . n A 1 15 ILE 15 12 12 ILE ILE A . n A 1 16 ARG 16 13 13 ARG ARG A . n A 1 17 ASP 17 14 14 ASP ASP A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 ILE 19 16 16 ILE ILE A . n A 1 20 ILE 20 17 17 ILE ILE A . n A 1 21 GLU 21 18 18 GLU GLU A . n A 1 22 ARG 22 19 19 ARG ARG A . n A 1 23 ALA 23 20 20 ALA ALA A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 MSE 26 23 23 MSE MSE A . n A 1 27 PHE 27 24 24 PHE PHE A . n A 1 28 ALA 28 25 25 ALA ALA A . n A 1 29 ARG 29 26 26 ARG ARG A . n A 1 30 GLN 30 27 27 GLN GLN A . n A 1 31 GLY 31 28 28 GLY GLY A . n A 1 32 TYR 32 29 29 TYR TYR A . n A 1 33 SER 33 30 30 SER SER A . n A 1 34 GLU 34 31 31 GLU GLU A . n A 1 35 THR 35 32 32 THR THR A . n A 1 36 SER 36 33 33 SER SER A . n A 1 37 ILE 37 34 34 ILE ILE A . n A 1 38 GLY 38 35 35 GLY GLY A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 ILE 40 37 37 ILE ILE A . n A 1 41 ALA 41 38 38 ALA ALA A . n A 1 42 ARG 42 39 39 ARG ARG A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 CYS 44 41 41 CYS CYS A . n A 1 45 GLU 45 42 42 GLU GLU A . n A 1 46 CYS 46 43 43 CYS CYS A . n A 1 47 SER 47 44 44 SER SER A . n A 1 48 LYS 48 45 45 LYS LYS A . n A 1 49 SER 49 46 46 SER SER A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 LEU 51 48 48 LEU LEU A . n A 1 52 TYR 52 49 49 TYR TYR A . n A 1 53 HIS 53 50 50 HIS HIS A . n A 1 54 TYR 54 51 51 TYR TYR A . n A 1 55 PHE 55 52 52 PHE PHE A . n A 1 56 ASP 56 53 53 ASP ASP A . n A 1 57 SER 57 54 54 SER SER A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 ALA 60 57 57 ALA ALA A . n A 1 61 VAL 61 58 58 VAL VAL A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 ARG 63 60 60 ARG ARG A . n A 1 64 ASP 64 61 61 ASP ASP A . n A 1 65 MSE 65 62 62 MSE MSE A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 THR 67 64 64 THR THR A . n A 1 68 THR 68 65 65 THR THR A . n A 1 69 HIS 69 66 66 HIS HIS A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 SER 72 69 69 SER SER A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 LEU 74 71 71 LEU LEU A . n A 1 75 GLU 75 72 72 GLU GLU A . n A 1 76 ARG 76 73 73 ARG ARG A . n A 1 77 CYS 77 74 74 CYS CYS A . n A 1 78 ARG 78 75 75 ARG ARG A . n A 1 79 GLN 79 76 76 GLN GLN A . n A 1 80 VAL 80 77 77 VAL VAL A . n A 1 81 LEU 81 78 78 LEU LEU A . n A 1 82 TYR 82 79 79 TYR TYR A . n A 1 83 GLY 83 80 80 GLY GLY A . n A 1 84 SER 84 81 81 SER SER A . n A 1 85 ASN 85 82 82 ASN ASN A . n A 1 86 GLU 86 83 83 GLU GLU A . n A 1 87 PRO 87 84 84 PRO PRO A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 THR 89 86 86 THR THR A . n A 1 90 ARG 90 87 87 ARG ARG A . n A 1 91 PHE 91 88 88 PHE PHE A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 GLN 93 90 90 GLN GLN A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 VAL 95 92 92 VAL VAL A . n A 1 96 LYS 96 93 93 LYS LYS A . n A 1 97 LEU 97 94 94 LEU LEU A . n A 1 98 PHE 98 95 95 PHE PHE A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 ILE 101 98 98 ILE ILE A . n A 1 102 TYR 102 99 99 TYR TYR A . n A 1 103 ALA 103 100 100 ALA ALA A . n A 1 104 THR 104 101 101 THR THR A . n A 1 105 SER 105 102 102 SER SER A . n A 1 106 ARG 106 103 103 ARG ARG A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 ARG 108 105 105 ARG ARG A . n A 1 109 HIS 109 106 106 HIS HIS A . n A 1 110 VAL 110 107 107 VAL VAL A . n A 1 111 VAL 111 108 108 VAL VAL A . n A 1 112 MSE 112 109 109 MSE MSE A . n A 1 113 LEU 113 110 110 LEU LEU A . n A 1 114 THR 114 111 111 THR THR A . n A 1 115 CYS 115 112 112 CYS CYS A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 ASP 117 114 114 ASP ASP A . n A 1 118 ALA 118 115 115 ALA ALA A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 PRO 120 117 117 PRO PRO A . n A 1 121 GLU 121 118 118 GLU GLU A . n A 1 122 ASP 122 119 119 ASP ASP A . n A 1 123 GLN 123 120 120 GLN GLN A . n A 1 124 ARG 124 121 121 ARG ARG A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 ALA 126 123 123 ALA ALA A . n A 1 127 LEU 127 124 124 LEU LEU A . n A 1 128 ILE 128 125 125 ILE ILE A . n A 1 129 ALA 129 126 126 ALA ALA A . n A 1 130 LYS 130 127 127 LYS LYS A . n A 1 131 GLN 131 128 128 GLN GLN A . n A 1 132 ARG 132 129 129 ARG ARG A . n A 1 133 GLU 133 130 130 GLU GLU A . n A 1 134 LEU 134 131 131 LEU LEU A . n A 1 135 ILE 135 132 132 ILE ILE A . n A 1 136 ALA 136 133 133 ALA ALA A . n A 1 137 TYR 137 134 134 TYR TYR A . n A 1 138 VAL 138 135 135 VAL VAL A . n A 1 139 ARG 139 136 136 ARG ARG A . n A 1 140 ASP 140 137 137 ASP ASP A . n A 1 141 ALA 141 138 138 ALA ALA A . n A 1 142 LEU 142 139 139 LEU LEU A . n A 1 143 LEU 143 140 140 LEU LEU A . n A 1 144 GLN 144 141 141 GLN GLN A . n A 1 145 LEU 145 142 142 LEU LEU A . n A 1 146 ARG 146 143 143 ARG ARG A . n A 1 147 PRO 147 144 144 PRO PRO A . n A 1 148 ASP 148 145 145 ASP ASP A . n A 1 149 MSE 149 146 146 MSE MSE A . n A 1 150 ALA 150 147 147 ALA ALA A . n A 1 151 ALA 151 148 148 ALA ALA A . n A 1 152 ASN 152 149 149 ASN ASN A . n A 1 153 ARG 153 150 150 ARG ARG A . n A 1 154 THR 154 151 151 THR THR A . n A 1 155 LEU 155 152 152 LEU LEU A . n A 1 156 ALA 156 153 153 ALA ALA A . n A 1 157 HIS 157 154 154 HIS HIS A . n A 1 158 VAL 158 155 155 VAL VAL A . n A 1 159 ASP 159 156 156 ASP ASP A . n A 1 160 THR 160 157 157 THR THR A . n A 1 161 MSE 161 158 158 MSE MSE A . n A 1 162 LEU 162 159 159 LEU LEU A . n A 1 163 PHE 163 160 160 PHE PHE A . n A 1 164 PHE 164 161 161 PHE PHE A . n A 1 165 GLY 165 162 162 GLY GLY A . n A 1 166 MSE 166 163 163 MSE MSE A . n A 1 167 ILE 167 164 164 ILE ILE A . n A 1 168 ASN 168 165 165 ASN ASN A . n A 1 169 TRP 169 166 166 TRP TRP A . n A 1 170 THR 170 167 167 THR THR A . n A 1 171 TYR 171 168 168 TYR TYR A . n A 1 172 THR 172 169 169 THR THR A . n A 1 173 TRP 173 170 170 TRP TRP A . n A 1 174 TYR 174 171 171 TYR TYR A . n A 1 175 LYS 175 172 172 LYS LYS A . n A 1 176 ALA 176 173 173 ALA ALA A . n A 1 177 ASP 177 174 174 ASP ASP A . n A 1 178 GLY 178 175 175 GLY GLY A . n A 1 179 SER 179 176 176 SER SER A . n A 1 180 VAL 180 177 177 VAL VAL A . n A 1 181 SER 181 178 178 SER SER A . n A 1 182 PRO 182 179 179 PRO PRO A . n A 1 183 ASP 183 180 180 ASP ASP A . n A 1 184 ALA 184 181 181 ALA ALA A . n A 1 185 LEU 185 182 182 LEU LEU A . n A 1 186 ALA 186 183 183 ALA ALA A . n A 1 187 GLU 187 184 184 GLU GLU A . n A 1 188 ARG 188 185 185 ARG ARG A . n A 1 189 THR 189 186 186 THR THR A . n A 1 190 VAL 190 187 187 VAL VAL A . n A 1 191 GLN 191 188 188 GLN GLN A . n A 1 192 LEU 192 189 189 LEU LEU A . n A 1 193 PHE 193 190 190 PHE PHE A . n A 1 194 LEU 194 191 191 LEU LEU A . n A 1 195 ASP 195 192 192 ASP ASP A . n A 1 196 GLY 196 193 193 GLY GLY A . n A 1 197 TYR 197 194 194 TYR TYR A . n A 1 198 LEU 198 195 195 LEU LEU A . n A 1 199 ASN 199 196 196 ASN ASN A . n A 1 200 LEU 200 197 197 LEU LEU A . n A 1 201 LEU 201 198 198 LEU LEU A . n A 1 202 SER 202 199 199 SER SER A . n A 1 203 ALA 203 200 200 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . B 2 HOH 26 226 26 HOH HOH A . B 2 HOH 27 227 27 HOH HOH A . B 2 HOH 28 228 28 HOH HOH A . B 2 HOH 29 229 29 HOH HOH A . B 2 HOH 30 230 30 HOH HOH A . B 2 HOH 31 231 31 HOH HOH A . B 2 HOH 32 232 32 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 34 HOH HOH A . B 2 HOH 35 235 35 HOH HOH A . B 2 HOH 36 236 36 HOH HOH A . B 2 HOH 37 237 37 HOH HOH A . B 2 HOH 38 238 38 HOH HOH A . B 2 HOH 39 239 39 HOH HOH A . B 2 HOH 40 240 40 HOH HOH A . B 2 HOH 41 241 41 HOH HOH A . B 2 HOH 42 242 42 HOH HOH A . B 2 HOH 43 243 43 HOH HOH A . B 2 HOH 44 244 44 HOH HOH A . B 2 HOH 45 245 45 HOH HOH A . B 2 HOH 46 246 46 HOH HOH A . B 2 HOH 47 247 47 HOH HOH A . B 2 HOH 48 248 48 HOH HOH A . B 2 HOH 49 249 49 HOH HOH A . B 2 HOH 50 250 50 HOH HOH A . B 2 HOH 51 251 51 HOH HOH A . B 2 HOH 52 252 52 HOH HOH A . B 2 HOH 53 253 53 HOH HOH A . B 2 HOH 54 254 54 HOH HOH A . B 2 HOH 55 255 55 HOH HOH A . B 2 HOH 56 256 56 HOH HOH A . B 2 HOH 57 257 57 HOH HOH A . B 2 HOH 58 258 58 HOH HOH A . B 2 HOH 59 259 59 HOH HOH A . B 2 HOH 60 260 60 HOH HOH A . B 2 HOH 61 261 61 HOH HOH A . B 2 HOH 62 262 62 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 64 HOH HOH A . B 2 HOH 65 265 65 HOH HOH A . B 2 HOH 66 266 66 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 68 HOH HOH A . B 2 HOH 69 269 69 HOH HOH A . B 2 HOH 70 270 70 HOH HOH A . B 2 HOH 71 271 71 HOH HOH A . B 2 HOH 72 272 72 HOH HOH A . B 2 HOH 73 273 73 HOH HOH A . B 2 HOH 74 274 74 HOH HOH A . B 2 HOH 75 275 75 HOH HOH A . B 2 HOH 76 276 76 HOH HOH A . B 2 HOH 77 277 77 HOH HOH A . B 2 HOH 78 278 78 HOH HOH A . B 2 HOH 79 279 79 HOH HOH A . B 2 HOH 80 280 80 HOH HOH A . B 2 HOH 81 281 81 HOH HOH A . B 2 HOH 82 282 82 HOH HOH A . B 2 HOH 83 283 83 HOH HOH A . B 2 HOH 84 284 84 HOH HOH A . B 2 HOH 85 285 85 HOH HOH A . B 2 HOH 86 286 86 HOH HOH A . B 2 HOH 87 287 87 HOH HOH A . B 2 HOH 88 288 88 HOH HOH A . B 2 HOH 89 289 89 HOH HOH A . B 2 HOH 90 290 90 HOH HOH A . B 2 HOH 91 291 91 HOH HOH A . B 2 HOH 92 292 92 HOH HOH A . B 2 HOH 93 293 93 HOH HOH A . B 2 HOH 94 294 94 HOH HOH A . B 2 HOH 95 295 95 HOH HOH A . B 2 HOH 96 296 96 HOH HOH A . B 2 HOH 97 297 97 HOH HOH A . B 2 HOH 98 298 98 HOH HOH A . B 2 HOH 99 299 99 HOH HOH A . B 2 HOH 100 300 100 HOH HOH A . B 2 HOH 101 301 101 HOH HOH A . B 2 HOH 102 302 102 HOH HOH A . B 2 HOH 103 303 103 HOH HOH A . B 2 HOH 104 304 104 HOH HOH A . B 2 HOH 105 305 105 HOH HOH A . B 2 HOH 106 306 106 HOH HOH A . B 2 HOH 107 307 107 HOH HOH A . B 2 HOH 108 308 108 HOH HOH A . B 2 HOH 109 309 109 HOH HOH A . B 2 HOH 110 310 110 HOH HOH A . B 2 HOH 111 311 111 HOH HOH A . B 2 HOH 112 312 112 HOH HOH A . B 2 HOH 113 313 113 HOH HOH A . B 2 HOH 114 314 114 HOH HOH A . B 2 HOH 115 315 115 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 26 A MSE 23 ? MET SELENOMETHIONINE 2 A MSE 65 A MSE 62 ? MET SELENOMETHIONINE 3 A MSE 112 A MSE 109 ? MET SELENOMETHIONINE 4 A MSE 149 A MSE 146 ? MET SELENOMETHIONINE 5 A MSE 161 A MSE 158 ? MET SELENOMETHIONINE 6 A MSE 166 A MSE 163 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3930 ? 1 MORE -28.9 ? 1 'SSA (A^2)' 17970 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.0240 _pdbx_refine_tls.origin_y 11.8050 _pdbx_refine_tls.origin_z 29.3260 _pdbx_refine_tls.T[1][1] -0.0779 _pdbx_refine_tls.T[2][2] -0.1212 _pdbx_refine_tls.T[3][3] -0.0797 _pdbx_refine_tls.T[1][2] 0.0264 _pdbx_refine_tls.T[1][3] 0.0194 _pdbx_refine_tls.T[2][3] 0.0361 _pdbx_refine_tls.L[1][1] 2.7615 _pdbx_refine_tls.L[2][2] 2.3735 _pdbx_refine_tls.L[3][3] 0.7467 _pdbx_refine_tls.L[1][2] 0.1753 _pdbx_refine_tls.L[1][3] 0.1452 _pdbx_refine_tls.L[2][3] -0.2546 _pdbx_refine_tls.S[1][1] 0.0145 _pdbx_refine_tls.S[1][2] 0.5620 _pdbx_refine_tls.S[1][3] 0.2923 _pdbx_refine_tls.S[2][1] -0.4958 _pdbx_refine_tls.S[2][2] -0.0887 _pdbx_refine_tls.S[2][3] -0.0565 _pdbx_refine_tls.S[3][1] -0.0397 _pdbx_refine_tls.S[3][2] 0.0145 _pdbx_refine_tls.S[3][3] 0.0742 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 9 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 12 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 200 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 203 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 SHELXD phasing . ? 5 MLPHARE phasing . ? 6 DM phasing . ? 7 RESOLVE phasing . ? 8 HKL-3000 phasing . ? 9 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 11 ? ? -103.83 -62.56 2 1 ARG A 26 ? ? -81.27 -77.75 3 1 GLU A 42 ? ? 39.78 62.89 4 1 PRO A 117 ? ? -56.86 -140.32 5 1 TRP A 170 ? ? -140.82 -29.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A ARG 3 ? A ARG 6 7 1 Y 1 A THR 4 ? A THR 7 8 1 Y 1 A ARG 5 ? A ARG 8 9 1 Y 1 A SER 6 ? A SER 9 10 1 Y 1 A ALA 7 ? A ALA 10 11 1 Y 1 A ASP 8 ? A ASP 11 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #