HEADER TRANSFERASE/DNA 04-MAR-08 3CFP TITLE STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA TITLE 2 POLYMERASE, TERNARY COMPLEX 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DC COMPND 4 P*DG)-3'); COMPND 5 CHAIN: T; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SUBSTRATE DNA, TEMPLATE STRAND; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*(DOC))-3'); COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: SUBSTRATE DNA, PRIMER STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA POLYMERASE; COMPND 16 CHAIN: A; COMPND 17 SYNONYM: GP43; COMPND 18 EC: 2.7.7.7; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED BY W.M. KECK FACILITY AT YALE SOURCE 4 UNIVERSITY); SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: SYNTHESIZED BY W.M. KECK FACILITY AT YALE SOURCE 8 UNIVERSITY); SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: BACTERIOPHAGE RB69; SOURCE 11 GENE: 43; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE, CATALYTIC COMPLEX, FIDELITY, TWO METAL ION MECHANISM, KEYWDS 2 DNA REPLICATION, DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, KEYWDS 3 EXONUCLEASE, HYDROLASE, NUCLEASE, NUCLEOTIDYLTRANSFERASE, KEYWDS 4 TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,D.KLIMENKO,M.WANG,T.A.STEITZ,W.H.KONIGSBERG REVDAT 4 21-FEB-24 3CFP 1 REMARK REVDAT 3 20-OCT-21 3CFP 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3CFP 1 VERSN REVDAT 1 10-MAR-09 3CFP 0 JRNL AUTH D.KLIMENKO,M.WANG,T.A.STEITZ,W.H.KONIGSBERG,J.WANG JRNL TITL INSIGHTS INTO BASE SELECTIVITY FROM THE STRUCTURES OF AN JRNL TITL 2 RB69 DNA POLYMERASE TRIPLE MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.WANG,A.K.SATTAR,C.C.WANG,J.D.KARAM,W.H.KONIGSBERG, REMARK 1 AUTH 2 T.A.STEITZ,M.C.FRANKLIN REMARK 1 TITL CRYSTAL STRUCTURE OF A POL ALPHA FAMILY REPLICATIVE DNA REMARK 1 TITL 2 POLYMERASE FROM BACTERIOPHAGE RB69 REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 89 1087 1997 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 9215631 REMARK 1 DOI 10.1016/S0092-8674(00)80296-2 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.C.FRANKLIN,J.WANG,T.A.STEITZ REMARK 1 TITL STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA DNA REMARK 1 TITL 2 POLYMERASE REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 105 657 2001 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 11389835 REMARK 1 DOI 10.1016/S0092-8674(01)00367-1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 39995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2074 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7343 REMARK 3 NUCLEIC ACID ATOMS : 650 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : -2.21000 REMARK 3 B33 (A**2) : 3.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.560 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.497 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8281 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11330 ; 1.292 ; 2.066 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 900 ; 5.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 372 ;35.572 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1342 ;19.012 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;19.540 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1199 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6106 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3983 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5619 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 475 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.256 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4612 ; 1.731 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7286 ; 2.776 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4429 ; 1.666 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4044 ; 2.557 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 1 T 18 REMARK 3 RESIDUE RANGE : P 102 P 115 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2750 55.8350 28.2970 REMARK 3 T TENSOR REMARK 3 T11: -0.1199 T22: 0.0396 REMARK 3 T33: 0.1837 T12: 0.0194 REMARK 3 T13: -0.0362 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 5.6862 L22: 2.2342 REMARK 3 L33: 0.0515 L12: -0.6942 REMARK 3 L13: -0.3682 L23: -0.1988 REMARK 3 S TENSOR REMARK 3 S11: -0.1797 S12: -0.1332 S13: 0.3602 REMARK 3 S21: -0.0552 S22: 0.1156 S23: 0.6200 REMARK 3 S31: 0.0670 S32: 0.0157 S33: 0.0640 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 105 REMARK 3 RESIDUE RANGE : A 340 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0690 58.8000 30.5560 REMARK 3 T TENSOR REMARK 3 T11: -0.2089 T22: -0.1173 REMARK 3 T33: 0.4126 T12: 0.0039 REMARK 3 T13: 0.0399 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.8315 L22: 3.4686 REMARK 3 L33: 1.1418 L12: 0.6517 REMARK 3 L13: 0.0108 L23: -0.8949 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: 0.0432 S13: 0.1211 REMARK 3 S21: 0.0712 S22: -0.0236 S23: -0.9269 REMARK 3 S31: -0.0747 S32: 0.0479 S33: -0.0448 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3820 35.3600 50.6290 REMARK 3 T TENSOR REMARK 3 T11: -0.0033 T22: -0.0945 REMARK 3 T33: 0.0081 T12: 0.0171 REMARK 3 T13: -0.1846 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.8573 L22: 3.1235 REMARK 3 L33: 0.9860 L12: 0.3688 REMARK 3 L13: -0.5826 L23: 0.0770 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: 0.0075 S13: -0.0746 REMARK 3 S21: 0.5844 S22: -0.0096 S23: -0.4079 REMARK 3 S31: 0.0221 S32: -0.0700 S33: -0.0206 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 468 REMARK 3 RESIDUE RANGE : A 576 A 706 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3470 48.9820 3.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.0828 T22: 0.0789 REMARK 3 T33: -0.1968 T12: -0.0034 REMARK 3 T13: 0.0111 T23: 0.0696 REMARK 3 L TENSOR REMARK 3 L11: 2.0500 L22: 2.4698 REMARK 3 L33: 0.5262 L12: 0.6339 REMARK 3 L13: -0.1016 L23: -0.2605 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.5941 S13: 0.1681 REMARK 3 S21: -0.6592 S22: 0.0433 S23: 0.0110 REMARK 3 S31: 0.1047 S32: -0.0728 S33: -0.0703 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 469 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9110 29.7660 18.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: -0.0530 REMARK 3 T33: -0.0110 T12: 0.0399 REMARK 3 T13: 0.0355 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.8755 L22: 6.2023 REMARK 3 L33: 0.6189 L12: 0.6655 REMARK 3 L13: 0.2921 L23: -0.2084 REMARK 3 S TENSOR REMARK 3 S11: 0.1201 S12: 0.1618 S13: -0.1326 REMARK 3 S21: -0.4020 S22: -0.0353 S23: -0.3805 REMARK 3 S31: 0.2939 S32: 0.0568 S33: -0.0848 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 707 A 737 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0080 33.8340 16.8480 REMARK 3 T TENSOR REMARK 3 T11: -0.0262 T22: -0.0530 REMARK 3 T33: 0.0169 T12: -0.0911 REMARK 3 T13: -0.0463 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 2.3471 L22: 1.1328 REMARK 3 L33: 3.5602 L12: -0.9239 REMARK 3 L13: -0.8260 L23: -1.2606 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.1020 S13: -0.0578 REMARK 3 S21: -0.3182 S22: 0.0233 S23: 0.1370 REMARK 3 S31: 0.1167 S32: -0.0986 S33: -0.0561 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 738 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0000 37.9680 36.9100 REMARK 3 T TENSOR REMARK 3 T11: -0.1306 T22: -0.0440 REMARK 3 T33: 0.0812 T12: 0.0566 REMARK 3 T13: 0.1368 T23: 0.1160 REMARK 3 L TENSOR REMARK 3 L11: 1.5015 L22: 2.4701 REMARK 3 L33: 2.3196 L12: -0.3987 REMARK 3 L13: 0.3339 L23: -0.5350 REMARK 3 S TENSOR REMARK 3 S11: -0.1772 S12: -0.2169 S13: -0.3525 REMARK 3 S21: 0.3997 S22: 0.3333 S23: 0.6051 REMARK 3 S31: -0.1450 S32: -0.3164 S33: -0.1561 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000046719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.10450 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG350 MONOMETHYL ETHER, 0.1M NA REMARK 280 CACODYLATE, 0.14M CACL2, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.36300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.40650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.64050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.40650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.36300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.64050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 902 REMARK 465 PHE A 903 REMARK 465 HIS A 904 REMARK 465 HIS A 905 REMARK 465 HIS A 906 REMARK 465 HIS A 907 REMARK 465 HIS A 908 REMARK 465 HIS A 909 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ASP A 327 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 183 O HOH A 1052 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG T 18 C3' DG T 18 C2' 0.076 REMARK 500 DG T 18 N1 DG T 18 C2 0.098 REMARK 500 DG T 18 N3 DG T 18 C4 0.096 REMARK 500 DG T 18 C4 DG T 18 C5 0.104 REMARK 500 DG T 18 C6 DG T 18 N1 0.055 REMARK 500 DG T 18 C8 DG T 18 N9 0.112 REMARK 500 DG T 18 C6 DG T 18 O6 0.059 REMARK 500 DC P 114 O3' DOC P 115 P 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC T 2 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 DA T 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA T 7 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG T 9 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC T 14 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG T 16 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG T 18 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG T 18 C2 - N3 - C4 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC P 103 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DG P 104 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DC P 107 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG P 109 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT P 112 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC P 114 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC P 114 C3' - O3' - P ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU A 197 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU A 618 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -66.01 -101.04 REMARK 500 SER A 22 3.89 -68.47 REMARK 500 ASP A 77 -6.44 -58.68 REMARK 500 ASN A 98 32.51 -71.65 REMARK 500 TYR A 156 52.74 -109.30 REMARK 500 GLU A 172 -0.29 -55.23 REMARK 500 GLU A 181 -4.89 -59.97 REMARK 500 LYS A 208 65.02 -118.36 REMARK 500 PHE A 221 -68.14 -126.31 REMARK 500 ILE A 253 97.73 7.54 REMARK 500 GLU A 254 -140.10 -92.83 REMARK 500 ASN A 255 -178.99 -177.18 REMARK 500 TYR A 257 45.50 -89.54 REMARK 500 LEU A 303 71.11 64.68 REMARK 500 ASN A 402 166.75 172.55 REMARK 500 SER A 414 71.33 27.42 REMARK 500 ASN A 424 52.81 71.61 REMARK 500 PRO A 458 -4.83 -57.98 REMARK 500 ASP A 468 -62.57 -109.58 REMARK 500 VAL A 573 -8.72 -58.52 REMARK 500 ASP A 579 100.73 -177.77 REMARK 500 THR A 622 -64.44 68.96 REMARK 500 ASP A 623 25.78 -147.73 REMARK 500 LYS A 640 -177.66 129.61 REMARK 500 PHE A 641 -30.24 79.50 REMARK 500 ARG A 642 -57.82 62.43 REMARK 500 LEU A 680 13.62 -142.29 REMARK 500 GLU A 686 -78.31 -108.31 REMARK 500 GLU A 755 -165.41 -110.89 REMARK 500 ALA A 785 63.69 -105.77 REMARK 500 ILE A 819 99.03 -63.34 REMARK 500 ASP A 820 -45.28 -178.26 REMARK 500 TRP A 865 23.82 -73.27 REMARK 500 ALA A 895 95.70 -69.19 REMARK 500 LEU A 897 -28.91 70.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE1 REMARK 620 2 HOH A1066 O 85.9 REMARK 620 3 HOH A1076 O 73.3 153.7 REMARK 620 4 HOH A1145 O 106.6 108.3 64.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD1 REMARK 620 2 LEU A 412 O 77.9 REMARK 620 3 ASP A 623 OD1 97.7 84.6 REMARK 620 4 TTP A1006 O2A 107.7 166.9 82.9 REMARK 620 5 TTP A1006 O1G 83.2 90.0 174.2 102.3 REMARK 620 6 TTP A1006 O2B 162.7 88.4 91.5 87.9 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 411 OD2 REMARK 620 2 ASP A 623 OD2 71.3 REMARK 620 3 TTP A1006 O2A 97.4 77.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IH7 RELATED DB: PDB REMARK 900 WILD TYPE RB69 DNA POLYMERASE APO FORM REMARK 900 RELATED ID: 1IG9 RELATED DB: PDB REMARK 900 WILD TYPE RB69 DNA POLYMERASE TERANRY COMPLEX REMARK 900 RELATED ID: 3CFO RELATED DB: PDB REMARK 900 TRIPLE MUTANT APO STRUCTURE REMARK 900 RELATED ID: 3CFR RELATED DB: PDB REMARK 900 STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA REMARK 900 POLYMERASE,TERNARY COMPLEX 2 DBREF 3CFP A 1 903 UNP Q38087 DPOL_BPR69 1 903 DBREF 3CFP T 1 18 PDB 3CFP 3CFP 1 18 DBREF 3CFP P 102 115 PDB 3CFP 3CFP 102 115 SEQADV 3CFP ALA A 561 UNP Q38087 LEU 561 ENGINEERED MUTATION SEQADV 3CFP GLY A 565 UNP Q38087 SER 565 ENGINEERED MUTATION SEQADV 3CFP ALA A 567 UNP Q38087 TYR 567 ENGINEERED MUTATION SEQADV 3CFP HIS A 904 UNP Q38087 EXPRESSION TAG SEQADV 3CFP HIS A 905 UNP Q38087 EXPRESSION TAG SEQADV 3CFP HIS A 906 UNP Q38087 EXPRESSION TAG SEQADV 3CFP HIS A 907 UNP Q38087 EXPRESSION TAG SEQADV 3CFP HIS A 908 UNP Q38087 EXPRESSION TAG SEQADV 3CFP HIS A 909 UNP Q38087 EXPRESSION TAG SEQRES 1 T 18 DA DC DA DG DG DT DA DA DG DC DA DG DT SEQRES 2 T 18 DC DC DG DC DG SEQRES 1 P 14 DG DC DG DG DA DC DT DG DC DT DT DA DC SEQRES 2 P 14 DOC SEQRES 1 A 909 MET LYS GLU PHE TYR LEU THR VAL GLU GLN ILE GLY ASP SEQRES 2 A 909 SER ILE PHE GLU ARG TYR ILE ASP SER ASN GLY ARG GLU SEQRES 3 A 909 ARG THR ARG GLU VAL GLU TYR LYS PRO SER LEU PHE ALA SEQRES 4 A 909 HIS CYS PRO GLU SER GLN ALA THR LYS TYR PHE ASP ILE SEQRES 5 A 909 TYR GLY LYS PRO CYS THR ARG LYS LEU PHE ALA ASN MET SEQRES 6 A 909 ARG ASP ALA SER GLN TRP ILE LYS ARG MET GLU ASP ILE SEQRES 7 A 909 GLY LEU GLU ALA LEU GLY MET ASP ASP PHE LYS LEU ALA SEQRES 8 A 909 TYR LEU SER ASP THR TYR ASN TYR GLU ILE LYS TYR ASP SEQRES 9 A 909 HIS THR LYS ILE ARG VAL ALA ASN PHE ASP ILE GLU VAL SEQRES 10 A 909 THR SER PRO ASP GLY PHE PRO GLU PRO SER GLN ALA LYS SEQRES 11 A 909 HIS PRO ILE ASP ALA ILE THR HIS TYR ASP SER ILE ASP SEQRES 12 A 909 ASP ARG PHE TYR VAL PHE ASP LEU LEU ASN SER PRO TYR SEQRES 13 A 909 GLY ASN VAL GLU GLU TRP SER ILE GLU ILE ALA ALA LYS SEQRES 14 A 909 LEU GLN GLU GLN GLY GLY ASP GLU VAL PRO SER GLU ILE SEQRES 15 A 909 ILE ASP LYS ILE ILE TYR MET PRO PHE ASP ASN GLU LYS SEQRES 16 A 909 GLU LEU LEU MET GLU TYR LEU ASN PHE TRP GLN GLN LYS SEQRES 17 A 909 THR PRO VAL ILE LEU THR GLY TRP ASN VAL GLU SER PHE SEQRES 18 A 909 ASP ILE PRO TYR VAL TYR ASN ARG ILE LYS ASN ILE PHE SEQRES 19 A 909 GLY GLU SER THR ALA LYS ARG LEU SER PRO HIS ARG LYS SEQRES 20 A 909 THR ARG VAL LYS VAL ILE GLU ASN MET TYR GLY SER ARG SEQRES 21 A 909 GLU ILE ILE THR LEU PHE GLY ILE SER VAL LEU ASP TYR SEQRES 22 A 909 ILE ASP LEU TYR LYS LYS PHE SER PHE THR ASN GLN PRO SEQRES 23 A 909 SER TYR SER LEU ASP TYR ILE SER GLU PHE GLU LEU ASN SEQRES 24 A 909 VAL GLY LYS LEU LYS TYR ASP GLY PRO ILE SER LYS LEU SEQRES 25 A 909 ARG GLU SER ASN HIS GLN ARG TYR ILE SER TYR ASN ILE SEQRES 26 A 909 ILE ASP VAL TYR ARG VAL LEU GLN ILE ASP ALA LYS ARG SEQRES 27 A 909 GLN PHE ILE ASN LEU SER LEU ASP MET GLY TYR TYR ALA SEQRES 28 A 909 LYS ILE GLN ILE GLN SER VAL PHE SER PRO ILE LYS THR SEQRES 29 A 909 TRP ASP ALA ILE ILE PHE ASN SER LEU LYS GLU GLN ASN SEQRES 30 A 909 LYS VAL ILE PRO GLN GLY ARG SER HIS PRO VAL GLN PRO SEQRES 31 A 909 TYR PRO GLY ALA PHE VAL LYS GLU PRO ILE PRO ASN ARG SEQRES 32 A 909 TYR LYS TYR VAL MET SER PHE ASP LEU THR SER LEU TYR SEQRES 33 A 909 PRO SER ILE ILE ARG GLN VAL ASN ILE SER PRO GLU THR SEQRES 34 A 909 ILE ALA GLY THR PHE LYS VAL ALA PRO LEU HIS ASP TYR SEQRES 35 A 909 ILE ASN ALA VAL ALA GLU ARG PRO SER ASP VAL TYR SER SEQRES 36 A 909 CYS SER PRO ASN GLY MET MET TYR TYR LYS ASP ARG ASP SEQRES 37 A 909 GLY VAL VAL PRO THR GLU ILE THR LYS VAL PHE ASN GLN SEQRES 38 A 909 ARG LYS GLU HIS LYS GLY TYR MET LEU ALA ALA GLN ARG SEQRES 39 A 909 ASN GLY GLU ILE ILE LYS GLU ALA LEU HIS ASN PRO ASN SEQRES 40 A 909 LEU SER VAL ASP GLU PRO LEU ASP VAL ASP TYR ARG PHE SEQRES 41 A 909 ASP PHE SER ASP GLU ILE LYS GLU LYS ILE LYS LYS LEU SEQRES 42 A 909 SER ALA LYS SER LEU ASN GLU MET LEU PHE ARG ALA GLN SEQRES 43 A 909 ARG THR GLU VAL ALA GLY MET THR ALA GLN ILE ASN ARG SEQRES 44 A 909 LYS ALA LEU ILE ASN GLY LEU ALA GLY ALA LEU GLY ASN SEQRES 45 A 909 VAL TRP PHE ARG TYR TYR ASP LEU ARG ASN ALA THR ALA SEQRES 46 A 909 ILE THR THR PHE GLY GLN MET ALA LEU GLN TRP ILE GLU SEQRES 47 A 909 ARG LYS VAL ASN GLU TYR LEU ASN GLU VAL CYS GLY THR SEQRES 48 A 909 GLU GLY GLU ALA PHE VAL LEU TYR GLY ASP THR ASP SER SEQRES 49 A 909 ILE TYR VAL SER ALA ASP LYS ILE ILE ASP LYS VAL GLY SEQRES 50 A 909 GLU SER LYS PHE ARG ASP THR ASN HIS TRP VAL ASP PHE SEQRES 51 A 909 LEU ASP LYS PHE ALA ARG GLU ARG MET GLU PRO ALA ILE SEQRES 52 A 909 ASP ARG GLY PHE ARG GLU MET CYS GLU TYR MET ASN ASN SEQRES 53 A 909 LYS GLN HIS LEU MET PHE MET ASP ARG GLU ALA ILE ALA SEQRES 54 A 909 GLY PRO PRO LEU GLY SER LYS GLY ILE GLY GLY PHE TRP SEQRES 55 A 909 THR GLY LYS LYS ARG TYR ALA LEU ASN VAL TRP ASP MET SEQRES 56 A 909 GLU GLY THR ARG TYR ALA GLU PRO LYS LEU LYS ILE MET SEQRES 57 A 909 GLY LEU GLU THR GLN LYS SER SER THR PRO LYS ALA VAL SEQRES 58 A 909 GLN LYS ALA LEU LYS GLU CYS ILE ARG ARG MET LEU GLN SEQRES 59 A 909 GLU GLY GLU GLU SER LEU GLN GLU TYR PHE LYS GLU PHE SEQRES 60 A 909 GLU LYS GLU PHE ARG GLN LEU ASN TYR ILE SER ILE ALA SEQRES 61 A 909 SER VAL SER SER ALA ASN ASN ILE ALA LYS TYR ASP VAL SEQRES 62 A 909 GLY GLY PHE PRO GLY PRO LYS CYS PRO PHE HIS ILE ARG SEQRES 63 A 909 GLY ILE LEU THR TYR ASN ARG ALA ILE LYS GLY ASN ILE SEQRES 64 A 909 ASP ALA PRO GLN VAL VAL GLU GLY GLU LYS VAL TYR VAL SEQRES 65 A 909 LEU PRO LEU ARG GLU GLY ASN PRO PHE GLY ASP LYS CYS SEQRES 66 A 909 ILE ALA TRP PRO SER GLY THR GLU ILE THR ASP LEU ILE SEQRES 67 A 909 LYS ASP ASP VAL LEU HIS TRP MET ASP TYR THR VAL LEU SEQRES 68 A 909 LEU GLU LYS THR PHE ILE LYS PRO LEU GLU GLY PHE THR SEQRES 69 A 909 SER ALA ALA LYS LEU ASP TYR GLU LYS LYS ALA SER LEU SEQRES 70 A 909 PHE ASP MET PHE ASP PHE HIS HIS HIS HIS HIS HIS MODRES 3CFP DOC P 115 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 115 18 HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CL A1005 1 HET TTP A1006 29 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 CA 4(CA 2+) FORMUL 8 CL CL 1- FORMUL 9 TTP C10 H17 N2 O14 P3 FORMUL 10 HOH *299(H2 O) HELIX 1 1 ASN A 64 ASP A 77 1 14 HELIX 2 2 ASP A 87 TYR A 97 1 11 HELIX 3 3 ASP A 104 ILE A 108 5 5 HELIX 4 4 SER A 163 LYS A 169 1 7 HELIX 5 5 LEU A 170 GLY A 174 5 5 HELIX 6 6 PRO A 179 ASP A 184 1 6 HELIX 7 7 ASN A 193 LYS A 208 1 16 HELIX 8 8 PHE A 221 GLY A 235 1 15 HELIX 9 9 GLY A 235 LYS A 240 1 6 HELIX 10 10 ARG A 241 SER A 243 5 3 HELIX 11 11 ASP A 272 SER A 281 1 10 HELIX 12 12 SER A 289 ASN A 299 1 11 HELIX 13 13 PRO A 308 SER A 310 5 3 HELIX 14 14 LYS A 311 ASN A 316 1 6 HELIX 15 15 ASN A 316 GLN A 339 1 24 HELIX 16 16 GLN A 339 LYS A 352 1 14 HELIX 17 17 GLN A 354 PHE A 359 5 6 HELIX 18 18 SER A 360 GLU A 375 1 16 HELIX 19 19 SER A 414 ASN A 424 1 11 HELIX 20 20 PRO A 438 ASN A 444 1 7 HELIX 21 21 GLY A 469 LEU A 503 1 35 HELIX 22 22 SER A 523 LYS A 532 1 10 HELIX 23 23 SER A 534 LEU A 570 1 37 HELIX 24 24 ASP A 579 CYS A 609 1 31 HELIX 25 25 ALA A 629 LYS A 635 1 7 HELIX 26 26 ASP A 643 ARG A 658 1 16 HELIX 27 27 ARG A 658 MET A 674 1 17 HELIX 28 28 LEU A 730 LYS A 734 5 5 HELIX 29 29 PRO A 738 GLU A 755 1 18 HELIX 30 30 GLY A 756 PHE A 771 1 16 HELIX 31 31 ARG A 772 LEU A 774 5 3 HELIX 32 32 ASN A 775 ALA A 780 1 6 HELIX 33 33 ASN A 787 VAL A 793 1 7 HELIX 34 34 PRO A 802 ILE A 815 1 14 HELIX 35 35 THR A 855 TRP A 865 1 11 HELIX 36 36 ASP A 867 PHE A 876 1 10 HELIX 37 37 PHE A 876 LYS A 888 1 13 SHEET 1 A 3 PHE A 4 ILE A 11 0 SHEET 2 A 3 SER A 14 ILE A 20 -1 O ARG A 18 N LEU A 6 SHEET 3 A 3 GLU A 26 VAL A 31 -1 O VAL A 31 N ILE A 15 SHEET 1 B 2 SER A 36 HIS A 40 0 SHEET 2 B 2 CYS A 57 LEU A 61 -1 O THR A 58 N ALA A 39 SHEET 1 C 2 PHE A 50 ASP A 51 0 SHEET 2 C 2 LYS A 378 VAL A 379 1 O VAL A 379 N PHE A 50 SHEET 1 D 6 ILE A 186 PHE A 191 0 SHEET 2 D 6 ARG A 145 LEU A 151 1 N PHE A 146 O ILE A 187 SHEET 3 D 6 ALA A 135 ASP A 140 -1 N HIS A 138 O TYR A 147 SHEET 4 D 6 VAL A 110 GLU A 116 -1 N ASN A 112 O TYR A 139 SHEET 5 D 6 ILE A 212 THR A 214 1 O THR A 214 N ALA A 111 SHEET 6 D 6 SER A 269 VAL A 270 1 O SER A 269 N LEU A 213 SHEET 1 E 2 ASN A 153 SER A 154 0 SHEET 2 E 2 GLY A 157 ASN A 158 -1 O GLY A 157 N SER A 154 SHEET 1 F 2 THR A 248 LYS A 251 0 SHEET 2 F 2 ILE A 262 LEU A 265 -1 O THR A 264 N ARG A 249 SHEET 1 G 7 ASN A 402 TYR A 404 0 SHEET 2 G 7 GLY A 700 GLY A 704 -1 O GLY A 700 N TYR A 404 SHEET 3 G 7 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 G 7 MET A 683 ALA A 689 -1 N ILE A 688 O TRP A 713 SHEET 5 G 7 VAL A 407 LEU A 412 -1 N VAL A 407 O ALA A 689 SHEET 6 G 7 SER A 624 SER A 628 -1 O VAL A 627 N MET A 408 SHEET 7 G 7 VAL A 617 GLY A 620 -1 N LEU A 618 O TYR A 626 SHEET 1 H 4 ASN A 402 TYR A 404 0 SHEET 2 H 4 GLY A 700 GLY A 704 -1 O GLY A 700 N TYR A 404 SHEET 3 H 4 ARG A 707 MET A 715 -1 O ARG A 707 N THR A 703 SHEET 4 H 4 THR A 718 MET A 728 -1 O LYS A 726 N LEU A 710 SHEET 1 I 3 ILE A 430 THR A 433 0 SHEET 2 I 3 MET A 461 TYR A 463 -1 O MET A 462 N ALA A 431 SHEET 3 I 3 SER A 455 CYS A 456 -1 N SER A 455 O TYR A 463 SHEET 1 J 3 SER A 781 SER A 784 0 SHEET 2 J 3 LYS A 829 PRO A 834 -1 O VAL A 830 N SER A 783 SHEET 3 J 3 CYS A 845 PRO A 849 -1 O ILE A 846 N LEU A 833 LINK O3' DC P 114 P DOC P 115 1555 1555 1.72 LINK OE1 GLU A 116 CA CA A1004 1555 1555 2.43 LINK OD1 ASP A 411 CA CA A1001 1555 1555 2.17 LINK OD2 ASP A 411 CA CA A1002 1555 1555 2.54 LINK O LEU A 412 CA CA A1001 1555 1555 2.55 LINK OD1 ASP A 623 CA CA A1001 1555 1555 2.05 LINK OD2 ASP A 623 CA CA A1002 1555 1555 2.76 LINK OE2 GLU A 716 CA CA A1003 1555 1555 2.72 LINK CA CA A1001 O2A TTP A1006 1555 1555 2.46 LINK CA CA A1001 O1G TTP A1006 1555 1555 2.16 LINK CA CA A1001 O2B TTP A1006 1555 1555 2.40 LINK CA CA A1002 O2A TTP A1006 1555 1555 2.60 LINK CA CA A1004 O HOH A1066 1555 1555 2.88 LINK CA CA A1004 O HOH A1076 1555 1555 2.56 LINK CA CA A1004 O HOH A1145 1555 1555 2.58 SITE 1 AC1 3 ASP A 411 LEU A 412 ASP A 623 SITE 1 AC2 2 ASP A 411 ASP A 623 SITE 1 AC3 3 ASP A 684 GLU A 686 GLU A 716 SITE 1 AC4 1 GLU A 116 SITE 1 AC5 3 ASN A 228 LYS A 231 ASN A 232 SITE 1 AC6 11 ASP A 411 LEU A 412 SER A 414 LEU A 415 SITE 2 AC6 11 TYR A 416 ARG A 482 LYS A 560 ASN A 564 SITE 3 AC6 11 ASP A 623 DA T 3 DG T 4 CRYST1 80.726 117.281 126.813 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007886 0.00000