data_3CGX # _entry.id 3CGX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CGX pdb_00003cgx 10.2210/pdb3cgx/pdb RCSB RCSB046762 ? ? WWPDB D_1000046762 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 379240 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3CGX _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-03-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of putative Nucleotide-diphospho-sugar Transferase (YP_389115.1) from Desulfovibrio desulfuricans G20 at 1.90 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3CGX _cell.length_a 56.520 _cell.length_b 66.940 _cell.length_c 71.670 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CGX _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative nucleotide-diphospho-sugar transferase' 28117.572 1 ? ? ? ? 2 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 3 water nat water 18.015 199 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SESCILFFVKYPEPGKVKTRLGEVVGNDKAA(MSE)LYRHFVQD(MSE)LQGLARLHADLHICYVPGDADLPEK FKAWLGPQH(MSE)FAAQQGLDLGER(MSE)KHA(MSE)QKAFDDGYDRVVL(MSE)GSDIPDYPCELVQKALNDLQHYD AAIGPAFDGGYYLIGFRKDSFCPDVFDGIRWGEADVYQPTVEK(MSE)RRARLEVLQLPDWNDVDTVWDLNVLYRTNKNS SFRRSSTYALLRENDALIRQYDIDLPG(MSE)APVEKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSESCILFFVKYPEPGKVKTRLGEVVGNDKAAMLYRHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLGPQHMFA AQQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQHYDAAIGPAFDGGYYLIGFRKDSFCPDVFDG IRWGEADVYQPTVEKMRRARLEVLQLPDWNDVDTVWDLNVLYRTNKNSSFRRSSTYALLRENDALIRQYDIDLPGMAPVE KE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 379240 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 GLU n 1 5 SER n 1 6 CYS n 1 7 ILE n 1 8 LEU n 1 9 PHE n 1 10 PHE n 1 11 VAL n 1 12 LYS n 1 13 TYR n 1 14 PRO n 1 15 GLU n 1 16 PRO n 1 17 GLY n 1 18 LYS n 1 19 VAL n 1 20 LYS n 1 21 THR n 1 22 ARG n 1 23 LEU n 1 24 GLY n 1 25 GLU n 1 26 VAL n 1 27 VAL n 1 28 GLY n 1 29 ASN n 1 30 ASP n 1 31 LYS n 1 32 ALA n 1 33 ALA n 1 34 MSE n 1 35 LEU n 1 36 TYR n 1 37 ARG n 1 38 HIS n 1 39 PHE n 1 40 VAL n 1 41 GLN n 1 42 ASP n 1 43 MSE n 1 44 LEU n 1 45 GLN n 1 46 GLY n 1 47 LEU n 1 48 ALA n 1 49 ARG n 1 50 LEU n 1 51 HIS n 1 52 ALA n 1 53 ASP n 1 54 LEU n 1 55 HIS n 1 56 ILE n 1 57 CYS n 1 58 TYR n 1 59 VAL n 1 60 PRO n 1 61 GLY n 1 62 ASP n 1 63 ALA n 1 64 ASP n 1 65 LEU n 1 66 PRO n 1 67 GLU n 1 68 LYS n 1 69 PHE n 1 70 LYS n 1 71 ALA n 1 72 TRP n 1 73 LEU n 1 74 GLY n 1 75 PRO n 1 76 GLN n 1 77 HIS n 1 78 MSE n 1 79 PHE n 1 80 ALA n 1 81 ALA n 1 82 GLN n 1 83 GLN n 1 84 GLY n 1 85 LEU n 1 86 ASP n 1 87 LEU n 1 88 GLY n 1 89 GLU n 1 90 ARG n 1 91 MSE n 1 92 LYS n 1 93 HIS n 1 94 ALA n 1 95 MSE n 1 96 GLN n 1 97 LYS n 1 98 ALA n 1 99 PHE n 1 100 ASP n 1 101 ASP n 1 102 GLY n 1 103 TYR n 1 104 ASP n 1 105 ARG n 1 106 VAL n 1 107 VAL n 1 108 LEU n 1 109 MSE n 1 110 GLY n 1 111 SER n 1 112 ASP n 1 113 ILE n 1 114 PRO n 1 115 ASP n 1 116 TYR n 1 117 PRO n 1 118 CYS n 1 119 GLU n 1 120 LEU n 1 121 VAL n 1 122 GLN n 1 123 LYS n 1 124 ALA n 1 125 LEU n 1 126 ASN n 1 127 ASP n 1 128 LEU n 1 129 GLN n 1 130 HIS n 1 131 TYR n 1 132 ASP n 1 133 ALA n 1 134 ALA n 1 135 ILE n 1 136 GLY n 1 137 PRO n 1 138 ALA n 1 139 PHE n 1 140 ASP n 1 141 GLY n 1 142 GLY n 1 143 TYR n 1 144 TYR n 1 145 LEU n 1 146 ILE n 1 147 GLY n 1 148 PHE n 1 149 ARG n 1 150 LYS n 1 151 ASP n 1 152 SER n 1 153 PHE n 1 154 CYS n 1 155 PRO n 1 156 ASP n 1 157 VAL n 1 158 PHE n 1 159 ASP n 1 160 GLY n 1 161 ILE n 1 162 ARG n 1 163 TRP n 1 164 GLY n 1 165 GLU n 1 166 ALA n 1 167 ASP n 1 168 VAL n 1 169 TYR n 1 170 GLN n 1 171 PRO n 1 172 THR n 1 173 VAL n 1 174 GLU n 1 175 LYS n 1 176 MSE n 1 177 ARG n 1 178 ARG n 1 179 ALA n 1 180 ARG n 1 181 LEU n 1 182 GLU n 1 183 VAL n 1 184 LEU n 1 185 GLN n 1 186 LEU n 1 187 PRO n 1 188 ASP n 1 189 TRP n 1 190 ASN n 1 191 ASP n 1 192 VAL n 1 193 ASP n 1 194 THR n 1 195 VAL n 1 196 TRP n 1 197 ASP n 1 198 LEU n 1 199 ASN n 1 200 VAL n 1 201 LEU n 1 202 TYR n 1 203 ARG n 1 204 THR n 1 205 ASN n 1 206 LYS n 1 207 ASN n 1 208 SER n 1 209 SER n 1 210 PHE n 1 211 ARG n 1 212 ARG n 1 213 SER n 1 214 SER n 1 215 THR n 1 216 TYR n 1 217 ALA n 1 218 LEU n 1 219 LEU n 1 220 ARG n 1 221 GLU n 1 222 ASN n 1 223 ASP n 1 224 ALA n 1 225 LEU n 1 226 ILE n 1 227 ARG n 1 228 GLN n 1 229 TYR n 1 230 ASP n 1 231 ILE n 1 232 ASP n 1 233 LEU n 1 234 PRO n 1 235 GLY n 1 236 MSE n 1 237 ALA n 1 238 PRO n 1 239 VAL n 1 240 GLU n 1 241 LYS n 1 242 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Desulfovibrio _entity_src_gen.pdbx_gene_src_gene 'YP_389115.1, Dde_2624' _entity_src_gen.gene_src_species 'Desulfovibrio desulfuricans' _entity_src_gen.gene_src_strain G20 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfovibrio desulfuricans subsp. desulfuricans str.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 207559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q30Y26_DESDG _struct_ref.pdbx_db_accession Q30Y26 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSESCILFFVKYPEPGKVKTRLGEVVGNDKAAMLYRHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLGPQHMFAA QQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQHYDAAIGPAFDGGYYLIGFRKDSFCPDVFDGI RWGEADVYQPTVEKMRRARLEVLQLPDWNDVDTVWDLNVLYRTNKNSSFRRSSTYALLRENDALIRQYDIDLPGMAPVEK E ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CGX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 242 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q30Y26 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 241 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 241 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3CGX _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q30Y26 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3CGX # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 20.0% Glycerol, 0.04M KH2PO4, 16.0% PEG 8000, No Buffer, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-02-21 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97908 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97908 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3CGX _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 28.80 _reflns.number_obs 22017 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_netI_over_sigmaI 10.720 _reflns.percent_possible_obs 98.800 _reflns.B_iso_Wilson_estimate 25.600 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.57 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 7889 ? 4164 0.455 1.95 ? ? ? ? ? 97.60 1 1 1.97 2.05 8024 ? 4205 0.312 2.8 ? ? ? ? ? 99.80 2 1 2.05 2.14 7547 ? 3955 0.222 3.9 ? ? ? ? ? 99.70 3 1 2.14 2.25 7718 ? 4032 0.160 5.3 ? ? ? ? ? 99.80 4 1 2.25 2.39 7945 ? 4148 0.117 6.8 ? ? ? ? ? 99.80 5 1 2.39 2.58 8222 ? 4270 0.091 8.4 ? ? ? ? ? 99.60 6 1 2.58 2.84 7825 ? 4063 0.063 11.5 ? ? ? ? ? 99.10 7 1 2.84 3.25 7900 ? 4092 0.041 16.4 ? ? ? ? ? 99.00 8 1 3.25 4.08 7791 ? 4032 0.025 23.4 ? ? ? ? ? 98.50 9 1 4.08 28.80 7741 ? 3996 0.023 27.7 ? ? ? ? ? 95.00 10 1 # _refine.entry_id 3CGX _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 28.80 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.650 _refine.ls_number_reflns_obs 21971 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. IMIDAZOLE FROM PROTEIN EXPRESSION IS MODELED IN THIS STRUCTURE. ; _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_R_work 0.171 _refine.ls_R_factor_R_free 0.212 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1128 _refine.B_iso_mean 21.842 _refine.aniso_B[1][1] -0.270 _refine.aniso_B[2][2] 0.320 _refine.aniso_B[3][3] -0.050 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.129 _refine.overall_SU_ML 0.088 _refine.overall_SU_B 5.874 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1809 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 199 _refine_hist.number_atoms_total 2013 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 28.80 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1920 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1271 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2618 1.553 1.964 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3098 1.067 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 244 4.756 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 91 38.582 24.725 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 306 12.279 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 21.673 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 277 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2213 0.008 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 401 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1191 1.948 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 480 0.556 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1910 3.219 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 729 5.152 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 708 7.416 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.090 _refine_ls_shell.number_reflns_R_work 1514 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.220 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1588 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CGX _struct.title ;Crystal structure of putative nucleotide-diphospho-sugar transferase (YP_389115.1) from Desulfovibrio desulfuricans G20 at 1.90 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_389115.1, Putative Nucleotide-diphospho-sugar Transferase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, TRANSFERASE ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3CGX # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 20 ? GLY A 28 ? LYS A 19 GLY A 27 1 ? 9 HELX_P HELX_P2 2 GLY A 28 ? ALA A 48 ? GLY A 27 ALA A 47 1 ? 21 HELX_P HELX_P3 3 ASP A 64 ? GLY A 74 ? ASP A 63 GLY A 73 1 ? 11 HELX_P HELX_P4 4 ASP A 86 ? ASP A 101 ? ASP A 85 ASP A 100 1 ? 16 HELX_P HELX_P5 5 PRO A 117 ? LEU A 128 ? PRO A 116 LEU A 127 1 ? 12 HELX_P HELX_P6 6 ASP A 151 ? PHE A 153 ? ASP A 150 PHE A 152 5 ? 3 HELX_P HELX_P7 7 CYS A 154 ? ASP A 159 ? CYS A 153 ASP A 158 5 ? 6 HELX_P HELX_P8 8 VAL A 168 ? ALA A 179 ? VAL A 167 ALA A 178 1 ? 12 HELX_P HELX_P9 9 THR A 194 ? ASN A 205 ? THR A 193 ASN A 204 1 ? 12 HELX_P HELX_P10 10 SER A 208 ? ARG A 212 ? SER A 207 ARG A 211 5 ? 5 HELX_P HELX_P11 11 SER A 213 ? ASN A 222 ? SER A 212 ASN A 221 1 ? 10 HELX_P HELX_P12 12 ASN A 222 ? ARG A 227 ? ASN A 221 ARG A 226 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A SER 3 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale2 covale both ? A ALA 33 C ? ? ? 1_555 A MSE 34 N ? ? A ALA 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A MSE 34 C ? ? ? 1_555 A LEU 35 N ? ? A MSE 33 A LEU 34 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A ASP 42 C ? ? ? 1_555 A MSE 43 N ? ? A ASP 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? A MSE 43 C ? ? ? 1_555 A LEU 44 N ? ? A MSE 42 A LEU 43 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A HIS 77 C ? ? ? 1_555 A MSE 78 N ? ? A HIS 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A MSE 78 C ? ? ? 1_555 A PHE 79 N ? ? A MSE 77 A PHE 78 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A ARG 90 C ? ? ? 1_555 A MSE 91 N ? ? A ARG 89 A MSE 90 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? A MSE 91 C ? ? ? 1_555 A LYS 92 N ? ? A MSE 90 A LYS 91 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale10 covale both ? A ALA 94 C ? ? ? 1_555 A MSE 95 N ? ? A ALA 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale11 covale both ? A MSE 95 C ? ? ? 1_555 A GLN 96 N ? ? A MSE 94 A GLN 95 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? A LEU 108 C ? ? ? 1_555 A MSE 109 N ? ? A LEU 107 A MSE 108 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale13 covale both ? A MSE 109 C ? ? ? 1_555 A GLY 110 N ? ? A MSE 108 A GLY 109 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale14 covale both ? A LYS 175 C ? ? ? 1_555 A MSE 176 N ? ? A LYS 174 A MSE 175 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale15 covale both ? A MSE 176 C ? ? ? 1_555 A ARG 177 N ? ? A MSE 175 A ARG 176 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 78 ? ALA A 81 ? MSE A 77 ALA A 80 A 2 ASP A 53 ? TYR A 58 ? ASP A 52 TYR A 57 A 3 SER A 5 ? VAL A 11 ? SER A 4 VAL A 10 A 4 ARG A 105 ? MSE A 109 ? ARG A 104 MSE A 108 A 5 TYR A 143 ? ARG A 149 ? TYR A 142 ARG A 148 A 6 ALA A 133 ? PRO A 137 ? ALA A 132 PRO A 136 A 7 VAL A 183 ? GLN A 185 ? VAL A 182 GLN A 184 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 78 ? O MSE A 77 N ILE A 56 ? N ILE A 55 A 2 3 O ASP A 53 ? O ASP A 52 N ILE A 7 ? N ILE A 6 A 3 4 N LEU A 8 ? N LEU A 7 O VAL A 107 ? O VAL A 106 A 4 5 N LEU A 108 ? N LEU A 107 O ILE A 146 ? O ILE A 145 A 5 6 O GLY A 147 ? O GLY A 146 N ALA A 134 ? N ALA A 133 A 6 7 N ALA A 133 ? N ALA A 132 O LEU A 184 ? O LEU A 183 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id IMD _struct_site.pdbx_auth_seq_id 242 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE IMD A 242' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS A 20 ? LYS A 19 . ? 1_555 ? 2 AC1 5 TYR A 36 ? TYR A 35 . ? 1_555 ? 3 AC1 5 ASP A 112 ? ASP A 111 . ? 1_555 ? 4 AC1 5 HOH C . ? HOH A 262 . ? 1_555 ? 5 AC1 5 HOH C . ? HOH A 286 . ? 1_555 ? # _atom_sites.entry_id 3CGX _atom_sites.fract_transf_matrix[1][1] 0.017693 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014939 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013953 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 CYS 6 5 5 CYS CYS A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 PHE 10 9 9 PHE PHE A . n A 1 11 VAL 11 10 10 VAL VAL A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 PRO 14 13 13 PRO PRO A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 GLY 17 16 16 GLY GLY A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 ARG 22 21 21 ARG ARG A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 GLU 25 24 24 GLU GLU A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 GLY 28 27 27 GLY GLY A . n A 1 29 ASN 29 28 28 ASN ASN A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 MSE 34 33 33 MSE MSE A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 HIS 38 37 37 HIS HIS A . n A 1 39 PHE 39 38 38 PHE PHE A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 GLN 41 40 40 GLN GLN A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 MSE 43 42 42 MSE MSE A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 HIS 51 50 50 HIS HIS A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 HIS 55 54 54 HIS HIS A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 CYS 57 56 56 CYS CYS A . n A 1 58 TYR 58 57 57 TYR TYR A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 PRO 60 59 59 PRO PRO A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 PRO 66 65 65 PRO PRO A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 LYS 68 67 67 LYS LYS A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 TRP 72 71 71 TRP TRP A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 GLN 76 75 75 GLN GLN A . n A 1 77 HIS 77 76 76 HIS HIS A . n A 1 78 MSE 78 77 77 MSE MSE A . n A 1 79 PHE 79 78 78 PHE PHE A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 GLN 83 82 82 GLN GLN A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 GLU 89 88 88 GLU GLU A . n A 1 90 ARG 90 89 89 ARG ARG A . n A 1 91 MSE 91 90 90 MSE MSE A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 HIS 93 92 92 HIS HIS A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 MSE 95 94 94 MSE MSE A . n A 1 96 GLN 96 95 95 GLN GLN A . n A 1 97 LYS 97 96 96 LYS LYS A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 ARG 105 104 104 ARG ARG A . n A 1 106 VAL 106 105 105 VAL VAL A . n A 1 107 VAL 107 106 106 VAL VAL A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 MSE 109 108 108 MSE MSE A . n A 1 110 GLY 110 109 109 GLY GLY A . n A 1 111 SER 111 110 110 SER SER A . n A 1 112 ASP 112 111 111 ASP ASP A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 PRO 114 113 113 PRO PRO A . n A 1 115 ASP 115 114 114 ASP ASP A . n A 1 116 TYR 116 115 115 TYR TYR A . n A 1 117 PRO 117 116 116 PRO PRO A . n A 1 118 CYS 118 117 117 CYS CYS A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 LYS 123 122 122 LYS LYS A . n A 1 124 ALA 124 123 123 ALA ALA A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 ASN 126 125 125 ASN ASN A . n A 1 127 ASP 127 126 126 ASP ASP A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 GLN 129 128 128 GLN GLN A . n A 1 130 HIS 130 129 129 HIS HIS A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 ASP 132 131 131 ASP ASP A . n A 1 133 ALA 133 132 132 ALA ALA A . n A 1 134 ALA 134 133 133 ALA ALA A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 GLY 136 135 135 GLY GLY A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 ALA 138 137 137 ALA ALA A . n A 1 139 PHE 139 138 138 PHE PHE A . n A 1 140 ASP 140 139 139 ASP ASP A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 TYR 143 142 142 TYR TYR A . n A 1 144 TYR 144 143 143 TYR TYR A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 ILE 146 145 145 ILE ILE A . n A 1 147 GLY 147 146 146 GLY GLY A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 ARG 149 148 148 ARG ARG A . n A 1 150 LYS 150 149 149 LYS LYS A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 SER 152 151 151 SER SER A . n A 1 153 PHE 153 152 152 PHE PHE A . n A 1 154 CYS 154 153 153 CYS CYS A . n A 1 155 PRO 155 154 154 PRO PRO A . n A 1 156 ASP 156 155 155 ASP ASP A . n A 1 157 VAL 157 156 156 VAL VAL A . n A 1 158 PHE 158 157 157 PHE PHE A . n A 1 159 ASP 159 158 158 ASP ASP A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 ILE 161 160 160 ILE ILE A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 TRP 163 162 162 TRP TRP A . n A 1 164 GLY 164 163 163 GLY GLY A . n A 1 165 GLU 165 164 164 GLU GLU A . n A 1 166 ALA 166 165 165 ALA ALA A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 VAL 168 167 167 VAL VAL A . n A 1 169 TYR 169 168 168 TYR TYR A . n A 1 170 GLN 170 169 169 GLN GLN A . n A 1 171 PRO 171 170 170 PRO PRO A . n A 1 172 THR 172 171 171 THR THR A . n A 1 173 VAL 173 172 172 VAL VAL A . n A 1 174 GLU 174 173 173 GLU GLU A . n A 1 175 LYS 175 174 174 LYS LYS A . n A 1 176 MSE 176 175 175 MSE MSE A . n A 1 177 ARG 177 176 176 ARG ARG A . n A 1 178 ARG 178 177 177 ARG ARG A . n A 1 179 ALA 179 178 178 ALA ALA A . n A 1 180 ARG 180 179 179 ARG ARG A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 GLU 182 181 181 GLU GLU A . n A 1 183 VAL 183 182 182 VAL VAL A . n A 1 184 LEU 184 183 183 LEU LEU A . n A 1 185 GLN 185 184 184 GLN GLN A . n A 1 186 LEU 186 185 185 LEU LEU A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 ASP 188 187 187 ASP ASP A . n A 1 189 TRP 189 188 188 TRP TRP A . n A 1 190 ASN 190 189 189 ASN ASN A . n A 1 191 ASP 191 190 190 ASP ASP A . n A 1 192 VAL 192 191 191 VAL VAL A . n A 1 193 ASP 193 192 192 ASP ASP A . n A 1 194 THR 194 193 193 THR THR A . n A 1 195 VAL 195 194 194 VAL VAL A . n A 1 196 TRP 196 195 195 TRP TRP A . n A 1 197 ASP 197 196 196 ASP ASP A . n A 1 198 LEU 198 197 197 LEU LEU A . n A 1 199 ASN 199 198 198 ASN ASN A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 LEU 201 200 200 LEU LEU A . n A 1 202 TYR 202 201 201 TYR TYR A . n A 1 203 ARG 203 202 202 ARG ARG A . n A 1 204 THR 204 203 203 THR THR A . n A 1 205 ASN 205 204 204 ASN ASN A . n A 1 206 LYS 206 205 205 LYS LYS A . n A 1 207 ASN 207 206 206 ASN ASN A . n A 1 208 SER 208 207 207 SER SER A . n A 1 209 SER 209 208 208 SER SER A . n A 1 210 PHE 210 209 209 PHE PHE A . n A 1 211 ARG 211 210 210 ARG ARG A . n A 1 212 ARG 212 211 211 ARG ARG A . n A 1 213 SER 213 212 212 SER SER A . n A 1 214 SER 214 213 213 SER SER A . n A 1 215 THR 215 214 214 THR THR A . n A 1 216 TYR 216 215 215 TYR TYR A . n A 1 217 ALA 217 216 216 ALA ALA A . n A 1 218 LEU 218 217 217 LEU LEU A . n A 1 219 LEU 219 218 218 LEU LEU A . n A 1 220 ARG 220 219 219 ARG ARG A . n A 1 221 GLU 221 220 220 GLU GLU A . n A 1 222 ASN 222 221 221 ASN ASN A . n A 1 223 ASP 223 222 222 ASP ASP A . n A 1 224 ALA 224 223 223 ALA ALA A . n A 1 225 LEU 225 224 224 LEU LEU A . n A 1 226 ILE 226 225 225 ILE ILE A . n A 1 227 ARG 227 226 226 ARG ARG A . n A 1 228 GLN 228 227 227 GLN GLN A . n A 1 229 TYR 229 228 228 TYR TYR A . n A 1 230 ASP 230 229 229 ASP ASP A . n A 1 231 ILE 231 230 230 ILE ILE A . n A 1 232 ASP 232 231 231 ASP ASP A . n A 1 233 LEU 233 232 ? ? ? A . n A 1 234 PRO 234 233 ? ? ? A . n A 1 235 GLY 235 234 ? ? ? A . n A 1 236 MSE 236 235 ? ? ? A . n A 1 237 ALA 237 236 ? ? ? A . n A 1 238 PRO 238 237 ? ? ? A . n A 1 239 VAL 239 238 ? ? ? A . n A 1 240 GLU 240 239 ? ? ? A . n A 1 241 LYS 241 240 ? ? ? A . n A 1 242 GLU 242 241 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD 1 242 1 IMD IMD A . C 3 HOH 1 243 2 HOH HOH A . C 3 HOH 2 244 3 HOH HOH A . C 3 HOH 3 245 4 HOH HOH A . C 3 HOH 4 246 5 HOH HOH A . C 3 HOH 5 247 6 HOH HOH A . C 3 HOH 6 248 7 HOH HOH A . C 3 HOH 7 249 8 HOH HOH A . C 3 HOH 8 250 9 HOH HOH A . C 3 HOH 9 251 10 HOH HOH A . C 3 HOH 10 252 11 HOH HOH A . C 3 HOH 11 253 12 HOH HOH A . C 3 HOH 12 254 13 HOH HOH A . C 3 HOH 13 255 14 HOH HOH A . C 3 HOH 14 256 15 HOH HOH A . C 3 HOH 15 257 16 HOH HOH A . C 3 HOH 16 258 17 HOH HOH A . C 3 HOH 17 259 18 HOH HOH A . C 3 HOH 18 260 19 HOH HOH A . C 3 HOH 19 261 20 HOH HOH A . C 3 HOH 20 262 21 HOH HOH A . C 3 HOH 21 263 22 HOH HOH A . C 3 HOH 22 264 23 HOH HOH A . C 3 HOH 23 265 24 HOH HOH A . C 3 HOH 24 266 25 HOH HOH A . C 3 HOH 25 267 26 HOH HOH A . C 3 HOH 26 268 27 HOH HOH A . C 3 HOH 27 269 28 HOH HOH A . C 3 HOH 28 270 29 HOH HOH A . C 3 HOH 29 271 30 HOH HOH A . C 3 HOH 30 272 31 HOH HOH A . C 3 HOH 31 273 32 HOH HOH A . C 3 HOH 32 274 33 HOH HOH A . C 3 HOH 33 275 34 HOH HOH A . C 3 HOH 34 276 35 HOH HOH A . C 3 HOH 35 277 36 HOH HOH A . C 3 HOH 36 278 37 HOH HOH A . C 3 HOH 37 279 38 HOH HOH A . C 3 HOH 38 280 39 HOH HOH A . C 3 HOH 39 281 40 HOH HOH A . C 3 HOH 40 282 41 HOH HOH A . C 3 HOH 41 283 42 HOH HOH A . C 3 HOH 42 284 43 HOH HOH A . C 3 HOH 43 285 44 HOH HOH A . C 3 HOH 44 286 45 HOH HOH A . C 3 HOH 45 287 46 HOH HOH A . C 3 HOH 46 288 47 HOH HOH A . C 3 HOH 47 289 48 HOH HOH A . C 3 HOH 48 290 49 HOH HOH A . C 3 HOH 49 291 50 HOH HOH A . C 3 HOH 50 292 51 HOH HOH A . C 3 HOH 51 293 52 HOH HOH A . C 3 HOH 52 294 53 HOH HOH A . C 3 HOH 53 295 54 HOH HOH A . C 3 HOH 54 296 55 HOH HOH A . C 3 HOH 55 297 56 HOH HOH A . C 3 HOH 56 298 57 HOH HOH A . C 3 HOH 57 299 58 HOH HOH A . C 3 HOH 58 300 59 HOH HOH A . C 3 HOH 59 301 60 HOH HOH A . C 3 HOH 60 302 61 HOH HOH A . C 3 HOH 61 303 62 HOH HOH A . C 3 HOH 62 304 63 HOH HOH A . C 3 HOH 63 305 64 HOH HOH A . C 3 HOH 64 306 65 HOH HOH A . C 3 HOH 65 307 66 HOH HOH A . C 3 HOH 66 308 67 HOH HOH A . C 3 HOH 67 309 68 HOH HOH A . C 3 HOH 68 310 69 HOH HOH A . C 3 HOH 69 311 70 HOH HOH A . C 3 HOH 70 312 71 HOH HOH A . C 3 HOH 71 313 72 HOH HOH A . C 3 HOH 72 314 73 HOH HOH A . C 3 HOH 73 315 74 HOH HOH A . C 3 HOH 74 316 75 HOH HOH A . C 3 HOH 75 317 76 HOH HOH A . C 3 HOH 76 318 77 HOH HOH A . C 3 HOH 77 319 78 HOH HOH A . C 3 HOH 78 320 79 HOH HOH A . C 3 HOH 79 321 80 HOH HOH A . C 3 HOH 80 322 81 HOH HOH A . C 3 HOH 81 323 82 HOH HOH A . C 3 HOH 82 324 83 HOH HOH A . C 3 HOH 83 325 84 HOH HOH A . C 3 HOH 84 326 85 HOH HOH A . C 3 HOH 85 327 86 HOH HOH A . C 3 HOH 86 328 87 HOH HOH A . C 3 HOH 87 329 88 HOH HOH A . C 3 HOH 88 330 89 HOH HOH A . C 3 HOH 89 331 90 HOH HOH A . C 3 HOH 90 332 91 HOH HOH A . C 3 HOH 91 333 92 HOH HOH A . C 3 HOH 92 334 93 HOH HOH A . C 3 HOH 93 335 94 HOH HOH A . C 3 HOH 94 336 95 HOH HOH A . C 3 HOH 95 337 96 HOH HOH A . C 3 HOH 96 338 97 HOH HOH A . C 3 HOH 97 339 98 HOH HOH A . C 3 HOH 98 340 99 HOH HOH A . C 3 HOH 99 341 100 HOH HOH A . C 3 HOH 100 342 101 HOH HOH A . C 3 HOH 101 343 102 HOH HOH A . C 3 HOH 102 344 103 HOH HOH A . C 3 HOH 103 345 104 HOH HOH A . C 3 HOH 104 346 105 HOH HOH A . C 3 HOH 105 347 106 HOH HOH A . C 3 HOH 106 348 107 HOH HOH A . C 3 HOH 107 349 108 HOH HOH A . C 3 HOH 108 350 109 HOH HOH A . C 3 HOH 109 351 110 HOH HOH A . C 3 HOH 110 352 111 HOH HOH A . C 3 HOH 111 353 112 HOH HOH A . C 3 HOH 112 354 113 HOH HOH A . C 3 HOH 113 355 114 HOH HOH A . C 3 HOH 114 356 115 HOH HOH A . C 3 HOH 115 357 116 HOH HOH A . C 3 HOH 116 358 117 HOH HOH A . C 3 HOH 117 359 118 HOH HOH A . C 3 HOH 118 360 119 HOH HOH A . C 3 HOH 119 361 120 HOH HOH A . C 3 HOH 120 362 121 HOH HOH A . C 3 HOH 121 363 122 HOH HOH A . C 3 HOH 122 364 123 HOH HOH A . C 3 HOH 123 365 124 HOH HOH A . C 3 HOH 124 366 125 HOH HOH A . C 3 HOH 125 367 126 HOH HOH A . C 3 HOH 126 368 127 HOH HOH A . C 3 HOH 127 369 128 HOH HOH A . C 3 HOH 128 370 129 HOH HOH A . C 3 HOH 129 371 130 HOH HOH A . C 3 HOH 130 372 131 HOH HOH A . C 3 HOH 131 373 132 HOH HOH A . C 3 HOH 132 374 133 HOH HOH A . C 3 HOH 133 375 134 HOH HOH A . C 3 HOH 134 376 135 HOH HOH A . C 3 HOH 135 377 136 HOH HOH A . C 3 HOH 136 378 137 HOH HOH A . C 3 HOH 137 379 138 HOH HOH A . C 3 HOH 138 380 139 HOH HOH A . C 3 HOH 139 381 140 HOH HOH A . C 3 HOH 140 382 141 HOH HOH A . C 3 HOH 141 383 142 HOH HOH A . C 3 HOH 142 384 143 HOH HOH A . C 3 HOH 143 385 144 HOH HOH A . C 3 HOH 144 386 145 HOH HOH A . C 3 HOH 145 387 146 HOH HOH A . C 3 HOH 146 388 147 HOH HOH A . C 3 HOH 147 389 148 HOH HOH A . C 3 HOH 148 390 149 HOH HOH A . C 3 HOH 149 391 150 HOH HOH A . C 3 HOH 150 392 151 HOH HOH A . C 3 HOH 151 393 152 HOH HOH A . C 3 HOH 152 394 153 HOH HOH A . C 3 HOH 153 395 154 HOH HOH A . C 3 HOH 154 396 155 HOH HOH A . C 3 HOH 155 397 156 HOH HOH A . C 3 HOH 156 398 157 HOH HOH A . C 3 HOH 157 399 158 HOH HOH A . C 3 HOH 158 400 159 HOH HOH A . C 3 HOH 159 401 160 HOH HOH A . C 3 HOH 160 402 161 HOH HOH A . C 3 HOH 161 403 162 HOH HOH A . C 3 HOH 162 404 163 HOH HOH A . C 3 HOH 163 405 164 HOH HOH A . C 3 HOH 164 406 165 HOH HOH A . C 3 HOH 165 407 166 HOH HOH A . C 3 HOH 166 408 167 HOH HOH A . C 3 HOH 167 409 168 HOH HOH A . C 3 HOH 168 410 169 HOH HOH A . C 3 HOH 169 411 170 HOH HOH A . C 3 HOH 170 412 171 HOH HOH A . C 3 HOH 171 413 172 HOH HOH A . C 3 HOH 172 414 173 HOH HOH A . C 3 HOH 173 415 174 HOH HOH A . C 3 HOH 174 416 175 HOH HOH A . C 3 HOH 175 417 176 HOH HOH A . C 3 HOH 176 418 177 HOH HOH A . C 3 HOH 177 419 178 HOH HOH A . C 3 HOH 178 420 179 HOH HOH A . C 3 HOH 179 421 180 HOH HOH A . C 3 HOH 180 422 181 HOH HOH A . C 3 HOH 181 423 182 HOH HOH A . C 3 HOH 182 424 183 HOH HOH A . C 3 HOH 183 425 184 HOH HOH A . C 3 HOH 184 426 185 HOH HOH A . C 3 HOH 185 427 186 HOH HOH A . C 3 HOH 186 428 187 HOH HOH A . C 3 HOH 187 429 188 HOH HOH A . C 3 HOH 188 430 189 HOH HOH A . C 3 HOH 189 431 190 HOH HOH A . C 3 HOH 190 432 191 HOH HOH A . C 3 HOH 191 433 192 HOH HOH A . C 3 HOH 192 434 193 HOH HOH A . C 3 HOH 193 435 194 HOH HOH A . C 3 HOH 194 436 195 HOH HOH A . C 3 HOH 195 437 196 HOH HOH A . C 3 HOH 196 438 197 HOH HOH A . C 3 HOH 197 439 198 HOH HOH A . C 3 HOH 198 440 199 HOH HOH A . C 3 HOH 199 441 200 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 34 A MSE 33 ? MET SELENOMETHIONINE 3 A MSE 43 A MSE 42 ? MET SELENOMETHIONINE 4 A MSE 78 A MSE 77 ? MET SELENOMETHIONINE 5 A MSE 91 A MSE 90 ? MET SELENOMETHIONINE 6 A MSE 95 A MSE 94 ? MET SELENOMETHIONINE 7 A MSE 109 A MSE 108 ? MET SELENOMETHIONINE 8 A MSE 176 A MSE 175 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 25.6860 _pdbx_refine_tls.origin_y 27.9180 _pdbx_refine_tls.origin_z 0.6990 _pdbx_refine_tls.T[1][1] -0.0942 _pdbx_refine_tls.T[2][2] -0.0472 _pdbx_refine_tls.T[3][3] -0.0740 _pdbx_refine_tls.T[1][2] -0.0113 _pdbx_refine_tls.T[1][3] -0.0133 _pdbx_refine_tls.T[2][3] -0.0077 _pdbx_refine_tls.L[1][1] 1.2019 _pdbx_refine_tls.L[2][2] 1.2680 _pdbx_refine_tls.L[3][3] 1.1011 _pdbx_refine_tls.L[1][2] -0.3667 _pdbx_refine_tls.L[1][3] -0.4097 _pdbx_refine_tls.L[2][3] 0.3460 _pdbx_refine_tls.S[1][1] 0.0076 _pdbx_refine_tls.S[2][2] -0.0109 _pdbx_refine_tls.S[3][3] 0.0033 _pdbx_refine_tls.S[1][2] -0.0519 _pdbx_refine_tls.S[1][3] 0.0517 _pdbx_refine_tls.S[2][3] 0.0153 _pdbx_refine_tls.S[2][1] 0.0796 _pdbx_refine_tls.S[3][1] -0.0712 _pdbx_refine_tls.S[3][2] 0.0475 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 2 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 232 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 231 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3CGX _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 117 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 117 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 117 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 121.35 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.15 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 51 ? ? -171.30 146.66 2 1 ASN A 206 ? ? 80.25 8.59 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 17 ? CE ? A LYS 18 CE 2 1 Y 1 A LYS 17 ? NZ ? A LYS 18 NZ 3 1 Y 1 A ARG 48 ? NE ? A ARG 49 NE 4 1 Y 1 A ARG 48 ? CZ ? A ARG 49 CZ 5 1 Y 1 A ARG 48 ? NH1 ? A ARG 49 NH1 6 1 Y 1 A ARG 48 ? NH2 ? A ARG 49 NH2 7 1 Y 1 A HIS 50 ? CG ? A HIS 51 CG 8 1 Y 1 A HIS 50 ? ND1 ? A HIS 51 ND1 9 1 Y 1 A HIS 50 ? CD2 ? A HIS 51 CD2 10 1 Y 1 A HIS 50 ? CE1 ? A HIS 51 CE1 11 1 Y 1 A HIS 50 ? NE2 ? A HIS 51 NE2 12 1 Y 1 A ARG 148 ? CZ ? A ARG 149 CZ 13 1 Y 1 A ARG 148 ? NH1 ? A ARG 149 NH1 14 1 Y 1 A ARG 148 ? NH2 ? A ARG 149 NH2 15 1 Y 1 A ARG 161 ? CG ? A ARG 162 CG 16 1 Y 1 A ARG 161 ? CD ? A ARG 162 CD 17 1 Y 1 A ARG 161 ? NE ? A ARG 162 NE 18 1 Y 1 A ARG 161 ? CZ ? A ARG 162 CZ 19 1 Y 1 A ARG 161 ? NH1 ? A ARG 162 NH1 20 1 Y 1 A ARG 161 ? NH2 ? A ARG 162 NH2 21 1 Y 1 A GLU 164 ? CG ? A GLU 165 CG 22 1 Y 1 A GLU 164 ? CD ? A GLU 165 CD 23 1 Y 1 A GLU 164 ? OE1 ? A GLU 165 OE1 24 1 Y 1 A GLU 164 ? OE2 ? A GLU 165 OE2 25 1 Y 1 A GLU 173 ? CG ? A GLU 174 CG 26 1 Y 1 A GLU 173 ? CD ? A GLU 174 CD 27 1 Y 1 A GLU 173 ? OE1 ? A GLU 174 OE1 28 1 Y 1 A GLU 173 ? OE2 ? A GLU 174 OE2 29 1 Y 1 A ARG 176 ? CG ? A ARG 177 CG 30 1 Y 1 A ARG 176 ? CD ? A ARG 177 CD 31 1 Y 1 A ARG 176 ? NE ? A ARG 177 NE 32 1 Y 1 A ARG 176 ? CZ ? A ARG 177 CZ 33 1 Y 1 A ARG 176 ? NH1 ? A ARG 177 NH1 34 1 Y 1 A ARG 176 ? NH2 ? A ARG 177 NH2 35 1 Y 1 A ARG 177 ? NE ? A ARG 178 NE 36 1 Y 1 A ARG 177 ? CZ ? A ARG 178 CZ 37 1 Y 1 A ARG 177 ? NH1 ? A ARG 178 NH1 38 1 Y 1 A ARG 177 ? NH2 ? A ARG 178 NH2 39 1 Y 1 A ARG 179 ? CG ? A ARG 180 CG 40 1 Y 1 A ARG 179 ? CD ? A ARG 180 CD 41 1 Y 1 A ARG 179 ? NE ? A ARG 180 NE 42 1 Y 1 A ARG 179 ? CZ ? A ARG 180 CZ 43 1 Y 1 A ARG 179 ? NH1 ? A ARG 180 NH1 44 1 Y 1 A ARG 179 ? NH2 ? A ARG 180 NH2 45 1 Y 1 A LYS 205 ? CG ? A LYS 206 CG 46 1 Y 1 A LYS 205 ? CD ? A LYS 206 CD 47 1 Y 1 A LYS 205 ? CE ? A LYS 206 CE 48 1 Y 1 A LYS 205 ? NZ ? A LYS 206 NZ 49 1 Y 1 A ASN 206 ? CG ? A ASN 207 CG 50 1 Y 1 A ASN 206 ? OD1 ? A ASN 207 OD1 51 1 Y 1 A ASN 206 ? ND2 ? A ASN 207 ND2 52 1 Y 1 A ARG 210 ? CG ? A ARG 211 CG 53 1 Y 1 A ARG 210 ? CD ? A ARG 211 CD 54 1 Y 1 A ARG 210 ? NE ? A ARG 211 NE 55 1 Y 1 A ARG 210 ? CZ ? A ARG 211 CZ 56 1 Y 1 A ARG 210 ? NH1 ? A ARG 211 NH1 57 1 Y 1 A ARG 210 ? NH2 ? A ARG 211 NH2 58 1 Y 1 A ASP 231 ? CG ? A ASP 232 CG 59 1 Y 1 A ASP 231 ? OD1 ? A ASP 232 OD1 60 1 Y 1 A ASP 231 ? OD2 ? A ASP 232 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A LEU 232 ? A LEU 233 3 1 Y 1 A PRO 233 ? A PRO 234 4 1 Y 1 A GLY 234 ? A GLY 235 5 1 Y 1 A MSE 235 ? A MSE 236 6 1 Y 1 A ALA 236 ? A ALA 237 7 1 Y 1 A PRO 237 ? A PRO 238 8 1 Y 1 A VAL 238 ? A VAL 239 9 1 Y 1 A GLU 239 ? A GLU 240 10 1 Y 1 A LYS 240 ? A LYS 241 11 1 Y 1 A GLU 241 ? A GLU 242 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 IMIDAZOLE IMD 3 water HOH #