data_3CQR # _entry.id 3CQR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3CQR RCSB RCSB047099 WWPDB D_1000047099 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3CQN _pdbx_database_related.details 'Lipocalin Domain of VDE at pH7' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3CQR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-04-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Arnoux, P.' 1 'Morosinotto, T.' 2 'Pignol, D.' 3 # _citation.id primary _citation.title 'A structural basis for the pH-dependent xanthophyll cycle in Arabidopsis thaliana.' _citation.journal_abbrev 'Plant Cell' _citation.journal_volume 21 _citation.page_first 2036 _citation.page_last 2044 _citation.year 2009 _citation.journal_id_ASTM PLCEEW _citation.country US _citation.journal_id_ISSN 1040-4651 _citation.journal_id_CSD 2109 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19638474 _citation.pdbx_database_id_DOI 10.1105/tpc.109.068007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Arnoux, P.' 1 primary 'Morosinotto, T.' 2 primary 'Saga, G.' 3 primary 'Bassi, R.' 4 primary 'Pignol, D.' 5 # _cell.length_a 122.297 _cell.length_b 122.297 _cell.length_c 158.337 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3CQR _cell.pdbx_unique_axis ? _cell.Z_PDB 32 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.entry_id 3CQR _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 98 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Violaxanthin de-epoxidase, chloroplast' 21343.457 2 1.10.99.3 ? 'Lipocalin Domain (UNP residues 191-366)' ? 2 non-polymer syn 'GADOLINIUM ATOM' 157.250 3 ? ? ? ? 3 water nat water 18.015 178 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein NON-PHOTOCHEMICAL QUENCHING 1, AtVxDE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISWRIKTLDSGFFTRSAVQKFV QDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVYYRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIG RDFSTFIRTDNTCGPEPRSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MDLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISWRIKTLDSGFFTRSAVQKFV QDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVYYRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIG RDFSTFIRTDNTCGPEPRSHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 LEU n 1 4 GLY n 1 5 GLU n 1 6 PHE n 1 7 PRO n 1 8 ALA n 1 9 PRO n 1 10 ASP n 1 11 PRO n 1 12 SER n 1 13 VAL n 1 14 LEU n 1 15 VAL n 1 16 GLN n 1 17 ASN n 1 18 PHE n 1 19 ASN n 1 20 ILE n 1 21 SER n 1 22 ASP n 1 23 PHE n 1 24 ASN n 1 25 GLY n 1 26 LYS n 1 27 TRP n 1 28 TYR n 1 29 ILE n 1 30 THR n 1 31 SER n 1 32 GLY n 1 33 LEU n 1 34 ASN n 1 35 PRO n 1 36 THR n 1 37 PHE n 1 38 ASP n 1 39 ALA n 1 40 PHE n 1 41 ASP n 1 42 CYS n 1 43 GLN n 1 44 LEU n 1 45 HIS n 1 46 GLU n 1 47 PHE n 1 48 HIS n 1 49 THR n 1 50 GLU n 1 51 GLY n 1 52 ASP n 1 53 ASN n 1 54 LYS n 1 55 LEU n 1 56 VAL n 1 57 GLY n 1 58 ASN n 1 59 ILE n 1 60 SER n 1 61 TRP n 1 62 ARG n 1 63 ILE n 1 64 LYS n 1 65 THR n 1 66 LEU n 1 67 ASP n 1 68 SER n 1 69 GLY n 1 70 PHE n 1 71 PHE n 1 72 THR n 1 73 ARG n 1 74 SER n 1 75 ALA n 1 76 VAL n 1 77 GLN n 1 78 LYS n 1 79 PHE n 1 80 VAL n 1 81 GLN n 1 82 ASP n 1 83 PRO n 1 84 ASN n 1 85 GLN n 1 86 PRO n 1 87 GLY n 1 88 VAL n 1 89 LEU n 1 90 TYR n 1 91 ASN n 1 92 HIS n 1 93 ASP n 1 94 ASN n 1 95 GLU n 1 96 TYR n 1 97 LEU n 1 98 HIS n 1 99 TYR n 1 100 GLN n 1 101 ASP n 1 102 ASP n 1 103 TRP n 1 104 TYR n 1 105 ILE n 1 106 LEU n 1 107 SER n 1 108 SER n 1 109 LYS n 1 110 ILE n 1 111 GLU n 1 112 ASN n 1 113 LYS n 1 114 PRO n 1 115 GLU n 1 116 ASP n 1 117 TYR n 1 118 ILE n 1 119 PHE n 1 120 VAL n 1 121 TYR n 1 122 TYR n 1 123 ARG n 1 124 GLY n 1 125 ARG n 1 126 ASN n 1 127 ASP n 1 128 ALA n 1 129 TRP n 1 130 ASP n 1 131 GLY n 1 132 TYR n 1 133 GLY n 1 134 GLY n 1 135 ALA n 1 136 VAL n 1 137 VAL n 1 138 TYR n 1 139 THR n 1 140 ARG n 1 141 SER n 1 142 SER n 1 143 VAL n 1 144 LEU n 1 145 PRO n 1 146 ASN n 1 147 SER n 1 148 ILE n 1 149 ILE n 1 150 PRO n 1 151 GLU n 1 152 LEU n 1 153 GLU n 1 154 LYS n 1 155 ALA n 1 156 ALA n 1 157 LYS n 1 158 SER n 1 159 ILE n 1 160 GLY n 1 161 ARG n 1 162 ASP n 1 163 PHE n 1 164 SER n 1 165 THR n 1 166 PHE n 1 167 ILE n 1 168 ARG n 1 169 THR n 1 170 ASP n 1 171 ASN n 1 172 THR n 1 173 CYS n 1 174 GLY n 1 175 PRO n 1 176 GLU n 1 177 PRO n 1 178 ARG n 1 179 SER n 1 180 HIS n 1 181 HIS n 1 182 HIS n 1 183 HIS n 1 184 HIS n 1 185 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Mouse-ear cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VDE1, AVDE1, NPQ1, VXDE' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE60 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VDE_ARATH _struct_ref.pdbx_db_accession Q39249 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISWRIKTLDSGFFTRSAVQKFVQ DPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVYYRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGR DFSTFIRTDNTCGPEP ; _struct_ref.pdbx_align_begin 191 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3CQR A 2 ? 177 ? Q39249 191 ? 366 ? 78 253 2 1 3CQR B 2 ? 177 ? Q39249 191 ? 366 ? 78 253 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3CQR MET A 1 ? UNP Q39249 ? ? 'INITIATING METHIONINE' 77 1 1 3CQR ARG A 178 ? UNP Q39249 ? ? 'EXPRESSION TAG' 254 2 1 3CQR SER A 179 ? UNP Q39249 ? ? 'EXPRESSION TAG' 255 3 1 3CQR HIS A 180 ? UNP Q39249 ? ? 'EXPRESSION TAG' 256 4 1 3CQR HIS A 181 ? UNP Q39249 ? ? 'EXPRESSION TAG' 257 5 1 3CQR HIS A 182 ? UNP Q39249 ? ? 'EXPRESSION TAG' 258 6 1 3CQR HIS A 183 ? UNP Q39249 ? ? 'EXPRESSION TAG' 259 7 1 3CQR HIS A 184 ? UNP Q39249 ? ? 'EXPRESSION TAG' 260 8 1 3CQR HIS A 185 ? UNP Q39249 ? ? 'EXPRESSION TAG' 261 9 2 3CQR MET B 1 ? UNP Q39249 ? ? 'INITIATING METHIONINE' 77 10 2 3CQR ARG B 178 ? UNP Q39249 ? ? 'EXPRESSION TAG' 254 11 2 3CQR SER B 179 ? UNP Q39249 ? ? 'EXPRESSION TAG' 255 12 2 3CQR HIS B 180 ? UNP Q39249 ? ? 'EXPRESSION TAG' 256 13 2 3CQR HIS B 181 ? UNP Q39249 ? ? 'EXPRESSION TAG' 257 14 2 3CQR HIS B 182 ? UNP Q39249 ? ? 'EXPRESSION TAG' 258 15 2 3CQR HIS B 183 ? UNP Q39249 ? ? 'EXPRESSION TAG' 259 16 2 3CQR HIS B 184 ? UNP Q39249 ? ? 'EXPRESSION TAG' 260 17 2 3CQR HIS B 185 ? UNP Q39249 ? ? 'EXPRESSION TAG' 261 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GD non-polymer . 'GADOLINIUM ATOM' ? Gd 157.250 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3CQR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.77 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 67.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'Sodium Acetate trihydrate pH5, Ammonium Sulfate 2.0M, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-09-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97972 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_wavelength_list 0.97972 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A # _reflns.entry_id 3CQR _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 30 _reflns.number_all 39345 _reflns.number_obs 39345 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rsym_value 0.070 _reflns.pdbx_netI_over_sigmaI 5.6 _reflns.B_iso_Wilson_estimate 29.3 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.267 _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.pdbx_Rsym_value 0.267 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.number_unique_all 5796 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CQR _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 29.2 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.280 _refine.ls_number_reflns_obs 37869 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_R_work 0.208 _refine.ls_R_factor_R_free 0.234 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1996 _refine.B_iso_mean 29.205 _refine.aniso_B[1][1] -0.090 _refine.aniso_B[2][2] -0.090 _refine.aniso_B[3][3] 0.180 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.932 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.pdbx_overall_ESU_R 0.144 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.085 _refine.overall_SU_B 2.965 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 39865 _refine.ls_R_factor_all 0.209 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2773 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 178 _refine_hist.number_atoms_total 2954 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 29.2 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2889 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3941 1.797 1.924 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 345 8.609 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 158 37.544 24.304 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 433 16.884 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15 17.871 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 402 0.180 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2323 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1151 0.214 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1928 0.314 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 180 0.156 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 1 0.026 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 126 0.236 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 25 0.261 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1758 1.328 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2791 2.215 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1317 3.412 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1150 5.152 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.780 _refine_ls_shell.number_reflns_R_work 2645 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.R_factor_R_free 0.288 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 135 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2780 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CQR _struct.title 'Crystal Structure of the Lipocalin domain of Violaxanthin de-epoxidase (VDE) at pH5' _struct.pdbx_descriptor 'Violaxanthin de-epoxidase, chloroplast (E.C.1.10.99.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CQR _struct_keywords.text ;Lipocalin, Enzyme, de-epoxidase, Xanthophyll cycle, non photochemical quenching, NPQ, Violaxanthin, Antheraxanthin, Zeaxanthin, Chloroplast, Membrane, Oxidoreductase, Thylakoid, Transit peptide ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is a monomer at pH7 and a dimer at pH5. There is one biological unit in the asymmetric unit at pH5 (chains A, B)' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? LEU A 14 ? ASP A 86 LEU A 90 5 ? 5 HELX_P HELX_P2 2 ASN A 19 ? ASN A 24 ? ASN A 95 ASN A 100 5 ? 6 HELX_P HELX_P3 3 ASN A 94 ? LEU A 97 ? ASN A 170 LEU A 173 5 ? 4 HELX_P HELX_P4 4 PRO A 145 ? SER A 147 ? PRO A 221 SER A 223 5 ? 3 HELX_P HELX_P5 5 ILE A 148 ? ILE A 159 ? ILE A 224 ILE A 235 1 ? 12 HELX_P HELX_P6 6 ASP A 162 ? PHE A 166 ? ASP A 238 PHE A 242 5 ? 5 HELX_P HELX_P7 7 ASP B 10 ? LEU B 14 ? ASP B 86 LEU B 90 5 ? 5 HELX_P HELX_P8 8 ASN B 19 ? ASN B 24 ? ASN B 95 ASN B 100 5 ? 6 HELX_P HELX_P9 9 ASN B 94 ? LEU B 97 ? ASN B 170 LEU B 173 5 ? 4 HELX_P HELX_P10 10 PRO B 145 ? SER B 147 ? PRO B 221 SER B 223 5 ? 3 HELX_P HELX_P11 11 ILE B 148 ? ILE B 159 ? ILE B 224 ILE B 235 1 ? 12 HELX_P HELX_P12 12 ASP B 162 ? PHE B 166 ? ASP B 238 PHE B 242 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 42 SG ? ? ? 1_555 A CYS 173 SG ? ? A CYS 118 A CYS 249 1_555 ? ? ? ? ? ? ? 2.034 ? disulf2 disulf ? ? B CYS 42 SG ? ? ? 1_555 B CYS 173 SG ? ? B CYS 118 B CYS 249 1_555 ? ? ? ? ? ? ? 2.038 ? metalc1 metalc ? ? C GD . GD ? ? ? 1_555 F HOH . O ? ? A GD 401 A HOH 483 1_555 ? ? ? ? ? ? ? 2.334 ? metalc2 metalc ? ? A GLU 5 N ? ? ? 1_555 C GD . GD ? ? A GLU 81 A GD 401 1_555 ? ? ? ? ? ? ? 2.677 ? metalc3 metalc ? ? A GLU 5 O ? ? ? 1_555 C GD . GD ? ? A GLU 81 A GD 401 1_555 ? ? ? ? ? ? ? 3.083 ? metalc4 metalc ? ? C GD . GD ? ? ? 1_555 F HOH . O ? ? A GD 401 A HOH 474 1_555 ? ? ? ? ? ? ? 3.403 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 167 ? ARG A 168 ? ILE A 243 ARG A 244 A 2 GLY A 25 ? GLY A 32 ? GLY A 101 GLY A 108 A 3 TRP A 129 ? THR A 139 ? TRP A 205 THR A 215 A 4 TYR A 117 ? ASN A 126 ? TYR A 193 ASN A 202 A 5 TYR A 99 ? LYS A 109 ? TYR A 175 LYS A 185 A 6 VAL A 88 ? ASN A 91 ? VAL A 164 ASN A 167 A 7 PHE A 70 ? GLN A 81 ? PHE A 146 GLN A 157 A 8 LYS A 54 ? LYS A 64 ? LYS A 130 LYS A 140 A 9 LEU A 44 ? GLU A 50 ? LEU A 120 GLU A 126 A 10 GLY A 25 ? GLY A 32 ? GLY A 101 GLY A 108 B 1 ILE B 167 ? ARG B 168 ? ILE B 243 ARG B 244 B 2 GLY B 25 ? GLY B 32 ? GLY B 101 GLY B 108 B 3 TYR B 132 ? THR B 139 ? TYR B 208 THR B 215 B 4 TYR B 117 ? ASN B 126 ? TYR B 193 ASN B 202 B 5 TYR B 99 ? LYS B 109 ? TYR B 175 LYS B 185 B 6 VAL B 88 ? ASN B 91 ? VAL B 164 ASN B 167 B 7 PHE B 70 ? GLN B 81 ? PHE B 146 GLN B 157 B 8 LYS B 54 ? LYS B 64 ? LYS B 130 LYS B 140 B 9 LEU B 44 ? GLU B 50 ? LEU B 120 GLU B 126 B 10 GLY B 25 ? GLY B 32 ? GLY B 101 GLY B 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 167 ? O ILE A 243 N GLY A 32 ? N GLY A 108 A 2 3 N TYR A 28 ? N TYR A 104 O THR A 139 ? O THR A 215 A 3 4 O TYR A 138 ? O TYR A 214 N ILE A 118 ? N ILE A 194 A 4 5 O ARG A 123 ? O ARG A 199 N ASP A 102 ? N ASP A 178 A 5 6 O TRP A 103 ? O TRP A 179 N LEU A 89 ? N LEU A 165 A 6 7 O TYR A 90 ? O TYR A 166 N VAL A 80 ? N VAL A 156 A 7 8 O PHE A 79 ? O PHE A 155 N LEU A 55 ? N LEU A 131 A 8 9 O VAL A 56 ? O VAL A 132 N HIS A 48 ? N HIS A 124 A 9 10 O HIS A 45 ? O HIS A 121 N TRP A 27 ? N TRP A 103 B 1 2 O ILE B 167 ? O ILE B 243 N GLY B 32 ? N GLY B 108 B 2 3 N TYR B 28 ? N TYR B 104 O THR B 139 ? O THR B 215 B 3 4 O TYR B 138 ? O TYR B 214 N ILE B 118 ? N ILE B 194 B 4 5 O ARG B 123 ? O ARG B 199 N ASP B 102 ? N ASP B 178 B 5 6 O TRP B 103 ? O TRP B 179 N LEU B 89 ? N LEU B 165 B 6 7 O TYR B 90 ? O TYR B 166 N VAL B 80 ? N VAL B 156 B 7 8 O ALA B 75 ? O ALA B 151 N ILE B 59 ? N ILE B 135 B 8 9 O VAL B 56 ? O VAL B 132 N HIS B 48 ? N HIS B 124 B 9 10 O HIS B 45 ? O HIS B 121 N TRP B 27 ? N TRP B 103 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE GD A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLU A 5 ? GLU A 81 . ? 1_555 ? 2 AC1 2 PHE A 6 ? PHE A 82 . ? 1_555 ? # _atom_sites.entry_id 3CQR _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008177 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006316 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C GD N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 77 ? ? ? A . n A 1 2 ASP 2 78 ? ? ? A . n A 1 3 LEU 3 79 ? ? ? A . n A 1 4 GLY 4 80 ? ? ? A . n A 1 5 GLU 5 81 81 GLU GLU A . n A 1 6 PHE 6 82 82 PHE PHE A . n A 1 7 PRO 7 83 83 PRO PRO A . n A 1 8 ALA 8 84 84 ALA ALA A . n A 1 9 PRO 9 85 85 PRO PRO A . n A 1 10 ASP 10 86 86 ASP ASP A . n A 1 11 PRO 11 87 87 PRO PRO A . n A 1 12 SER 12 88 88 SER SER A . n A 1 13 VAL 13 89 89 VAL VAL A . n A 1 14 LEU 14 90 90 LEU LEU A . n A 1 15 VAL 15 91 91 VAL VAL A . n A 1 16 GLN 16 92 92 GLN GLN A . n A 1 17 ASN 17 93 93 ASN ASN A . n A 1 18 PHE 18 94 94 PHE PHE A . n A 1 19 ASN 19 95 95 ASN ASN A . n A 1 20 ILE 20 96 96 ILE ILE A . n A 1 21 SER 21 97 97 SER SER A . n A 1 22 ASP 22 98 98 ASP ASP A . n A 1 23 PHE 23 99 99 PHE PHE A . n A 1 24 ASN 24 100 100 ASN ASN A . n A 1 25 GLY 25 101 101 GLY GLY A . n A 1 26 LYS 26 102 102 LYS LYS A . n A 1 27 TRP 27 103 103 TRP TRP A . n A 1 28 TYR 28 104 104 TYR TYR A . n A 1 29 ILE 29 105 105 ILE ILE A . n A 1 30 THR 30 106 106 THR THR A . n A 1 31 SER 31 107 107 SER SER A . n A 1 32 GLY 32 108 108 GLY GLY A . n A 1 33 LEU 33 109 109 LEU LEU A . n A 1 34 ASN 34 110 110 ASN ASN A . n A 1 35 PRO 35 111 111 PRO PRO A . n A 1 36 THR 36 112 112 THR THR A . n A 1 37 PHE 37 113 113 PHE PHE A . n A 1 38 ASP 38 114 114 ASP ASP A . n A 1 39 ALA 39 115 115 ALA ALA A . n A 1 40 PHE 40 116 116 PHE PHE A . n A 1 41 ASP 41 117 117 ASP ASP A . n A 1 42 CYS 42 118 118 CYS CYS A . n A 1 43 GLN 43 119 119 GLN GLN A . n A 1 44 LEU 44 120 120 LEU LEU A . n A 1 45 HIS 45 121 121 HIS HIS A . n A 1 46 GLU 46 122 122 GLU GLU A . n A 1 47 PHE 47 123 123 PHE PHE A . n A 1 48 HIS 48 124 124 HIS HIS A . n A 1 49 THR 49 125 125 THR THR A . n A 1 50 GLU 50 126 126 GLU GLU A . n A 1 51 GLY 51 127 127 GLY GLY A . n A 1 52 ASP 52 128 128 ASP ASP A . n A 1 53 ASN 53 129 129 ASN ASN A . n A 1 54 LYS 54 130 130 LYS LYS A . n A 1 55 LEU 55 131 131 LEU LEU A . n A 1 56 VAL 56 132 132 VAL VAL A . n A 1 57 GLY 57 133 133 GLY GLY A . n A 1 58 ASN 58 134 134 ASN ASN A . n A 1 59 ILE 59 135 135 ILE ILE A . n A 1 60 SER 60 136 136 SER SER A . n A 1 61 TRP 61 137 137 TRP TRP A . n A 1 62 ARG 62 138 138 ARG ARG A . n A 1 63 ILE 63 139 139 ILE ILE A . n A 1 64 LYS 64 140 140 LYS LYS A . n A 1 65 THR 65 141 141 THR THR A . n A 1 66 LEU 66 142 142 LEU LEU A . n A 1 67 ASP 67 143 143 ASP ASP A . n A 1 68 SER 68 144 144 SER SER A . n A 1 69 GLY 69 145 145 GLY GLY A . n A 1 70 PHE 70 146 146 PHE PHE A . n A 1 71 PHE 71 147 147 PHE PHE A . n A 1 72 THR 72 148 148 THR THR A . n A 1 73 ARG 73 149 149 ARG ARG A . n A 1 74 SER 74 150 150 SER SER A . n A 1 75 ALA 75 151 151 ALA ALA A . n A 1 76 VAL 76 152 152 VAL VAL A . n A 1 77 GLN 77 153 153 GLN GLN A . n A 1 78 LYS 78 154 154 LYS LYS A . n A 1 79 PHE 79 155 155 PHE PHE A . n A 1 80 VAL 80 156 156 VAL VAL A . n A 1 81 GLN 81 157 157 GLN GLN A . n A 1 82 ASP 82 158 158 ASP ASP A . n A 1 83 PRO 83 159 159 PRO PRO A . n A 1 84 ASN 84 160 160 ASN ASN A . n A 1 85 GLN 85 161 161 GLN GLN A . n A 1 86 PRO 86 162 162 PRO PRO A . n A 1 87 GLY 87 163 163 GLY GLY A . n A 1 88 VAL 88 164 164 VAL VAL A . n A 1 89 LEU 89 165 165 LEU LEU A . n A 1 90 TYR 90 166 166 TYR TYR A . n A 1 91 ASN 91 167 167 ASN ASN A . n A 1 92 HIS 92 168 168 HIS HIS A . n A 1 93 ASP 93 169 169 ASP ASP A . n A 1 94 ASN 94 170 170 ASN ASN A . n A 1 95 GLU 95 171 171 GLU GLU A . n A 1 96 TYR 96 172 172 TYR TYR A . n A 1 97 LEU 97 173 173 LEU LEU A . n A 1 98 HIS 98 174 174 HIS HIS A . n A 1 99 TYR 99 175 175 TYR TYR A . n A 1 100 GLN 100 176 176 GLN GLN A . n A 1 101 ASP 101 177 177 ASP ASP A . n A 1 102 ASP 102 178 178 ASP ASP A . n A 1 103 TRP 103 179 179 TRP TRP A . n A 1 104 TYR 104 180 180 TYR TYR A . n A 1 105 ILE 105 181 181 ILE ILE A . n A 1 106 LEU 106 182 182 LEU LEU A . n A 1 107 SER 107 183 183 SER SER A . n A 1 108 SER 108 184 184 SER SER A . n A 1 109 LYS 109 185 185 LYS LYS A . n A 1 110 ILE 110 186 186 ILE ILE A . n A 1 111 GLU 111 187 187 GLU GLU A . n A 1 112 ASN 112 188 188 ASN ASN A . n A 1 113 LYS 113 189 189 LYS LYS A . n A 1 114 PRO 114 190 190 PRO PRO A . n A 1 115 GLU 115 191 191 GLU GLU A . n A 1 116 ASP 116 192 192 ASP ASP A . n A 1 117 TYR 117 193 193 TYR TYR A . n A 1 118 ILE 118 194 194 ILE ILE A . n A 1 119 PHE 119 195 195 PHE PHE A . n A 1 120 VAL 120 196 196 VAL VAL A . n A 1 121 TYR 121 197 197 TYR TYR A . n A 1 122 TYR 122 198 198 TYR TYR A . n A 1 123 ARG 123 199 199 ARG ARG A . n A 1 124 GLY 124 200 200 GLY GLY A . n A 1 125 ARG 125 201 201 ARG ARG A . n A 1 126 ASN 126 202 202 ASN ASN A . n A 1 127 ASP 127 203 203 ASP ASP A . n A 1 128 ALA 128 204 204 ALA ALA A . n A 1 129 TRP 129 205 205 TRP TRP A . n A 1 130 ASP 130 206 206 ASP ASP A . n A 1 131 GLY 131 207 207 GLY GLY A . n A 1 132 TYR 132 208 208 TYR TYR A . n A 1 133 GLY 133 209 209 GLY GLY A . n A 1 134 GLY 134 210 210 GLY GLY A . n A 1 135 ALA 135 211 211 ALA ALA A . n A 1 136 VAL 136 212 212 VAL VAL A . n A 1 137 VAL 137 213 213 VAL VAL A . n A 1 138 TYR 138 214 214 TYR TYR A . n A 1 139 THR 139 215 215 THR THR A . n A 1 140 ARG 140 216 216 ARG ARG A . n A 1 141 SER 141 217 217 SER SER A . n A 1 142 SER 142 218 218 SER SER A . n A 1 143 VAL 143 219 219 VAL VAL A . n A 1 144 LEU 144 220 220 LEU LEU A . n A 1 145 PRO 145 221 221 PRO PRO A . n A 1 146 ASN 146 222 222 ASN ASN A . n A 1 147 SER 147 223 223 SER SER A . n A 1 148 ILE 148 224 224 ILE ILE A . n A 1 149 ILE 149 225 225 ILE ILE A . n A 1 150 PRO 150 226 226 PRO PRO A . n A 1 151 GLU 151 227 227 GLU GLU A . n A 1 152 LEU 152 228 228 LEU LEU A . n A 1 153 GLU 153 229 229 GLU GLU A . n A 1 154 LYS 154 230 230 LYS LYS A . n A 1 155 ALA 155 231 231 ALA ALA A . n A 1 156 ALA 156 232 232 ALA ALA A . n A 1 157 LYS 157 233 233 LYS LYS A . n A 1 158 SER 158 234 234 SER SER A . n A 1 159 ILE 159 235 235 ILE ILE A . n A 1 160 GLY 160 236 236 GLY GLY A . n A 1 161 ARG 161 237 237 ARG ARG A . n A 1 162 ASP 162 238 238 ASP ASP A . n A 1 163 PHE 163 239 239 PHE PHE A . n A 1 164 SER 164 240 240 SER SER A . n A 1 165 THR 165 241 241 THR THR A . n A 1 166 PHE 166 242 242 PHE PHE A . n A 1 167 ILE 167 243 243 ILE ILE A . n A 1 168 ARG 168 244 244 ARG ARG A . n A 1 169 THR 169 245 245 THR THR A . n A 1 170 ASP 170 246 246 ASP ASP A . n A 1 171 ASN 171 247 247 ASN ASN A . n A 1 172 THR 172 248 248 THR THR A . n A 1 173 CYS 173 249 249 CYS CYS A . n A 1 174 GLY 174 250 250 GLY GLY A . n A 1 175 PRO 175 251 251 PRO PRO A . n A 1 176 GLU 176 252 ? ? ? A . n A 1 177 PRO 177 253 ? ? ? A . n A 1 178 ARG 178 254 ? ? ? A . n A 1 179 SER 179 255 ? ? ? A . n A 1 180 HIS 180 256 ? ? ? A . n A 1 181 HIS 181 257 ? ? ? A . n A 1 182 HIS 182 258 ? ? ? A . n A 1 183 HIS 183 259 ? ? ? A . n A 1 184 HIS 184 260 ? ? ? A . n A 1 185 HIS 185 261 ? ? ? A . n B 1 1 MET 1 77 ? ? ? B . n B 1 2 ASP 2 78 ? ? ? B . n B 1 3 LEU 3 79 ? ? ? B . n B 1 4 GLY 4 80 ? ? ? B . n B 1 5 GLU 5 81 ? ? ? B . n B 1 6 PHE 6 82 82 PHE PHE B . n B 1 7 PRO 7 83 83 PRO PRO B . n B 1 8 ALA 8 84 84 ALA ALA B . n B 1 9 PRO 9 85 85 PRO PRO B . n B 1 10 ASP 10 86 86 ASP ASP B . n B 1 11 PRO 11 87 87 PRO PRO B . n B 1 12 SER 12 88 88 SER SER B . n B 1 13 VAL 13 89 89 VAL VAL B . n B 1 14 LEU 14 90 90 LEU LEU B . n B 1 15 VAL 15 91 91 VAL VAL B . n B 1 16 GLN 16 92 92 GLN GLN B . n B 1 17 ASN 17 93 93 ASN ASN B . n B 1 18 PHE 18 94 94 PHE PHE B . n B 1 19 ASN 19 95 95 ASN ASN B . n B 1 20 ILE 20 96 96 ILE ILE B . n B 1 21 SER 21 97 97 SER SER B . n B 1 22 ASP 22 98 98 ASP ASP B . n B 1 23 PHE 23 99 99 PHE PHE B . n B 1 24 ASN 24 100 100 ASN ASN B . n B 1 25 GLY 25 101 101 GLY GLY B . n B 1 26 LYS 26 102 102 LYS LYS B . n B 1 27 TRP 27 103 103 TRP TRP B . n B 1 28 TYR 28 104 104 TYR TYR B . n B 1 29 ILE 29 105 105 ILE ILE B . n B 1 30 THR 30 106 106 THR THR B . n B 1 31 SER 31 107 107 SER SER B . n B 1 32 GLY 32 108 108 GLY GLY B . n B 1 33 LEU 33 109 109 LEU LEU B . n B 1 34 ASN 34 110 110 ASN ASN B . n B 1 35 PRO 35 111 111 PRO PRO B . n B 1 36 THR 36 112 112 THR THR B . n B 1 37 PHE 37 113 113 PHE PHE B . n B 1 38 ASP 38 114 114 ASP ASP B . n B 1 39 ALA 39 115 115 ALA ALA B . n B 1 40 PHE 40 116 116 PHE PHE B . n B 1 41 ASP 41 117 117 ASP ASP B . n B 1 42 CYS 42 118 118 CYS CYS B . n B 1 43 GLN 43 119 119 GLN GLN B . n B 1 44 LEU 44 120 120 LEU LEU B . n B 1 45 HIS 45 121 121 HIS HIS B . n B 1 46 GLU 46 122 122 GLU GLU B . n B 1 47 PHE 47 123 123 PHE PHE B . n B 1 48 HIS 48 124 124 HIS HIS B . n B 1 49 THR 49 125 125 THR THR B . n B 1 50 GLU 50 126 126 GLU GLU B . n B 1 51 GLY 51 127 127 GLY GLY B . n B 1 52 ASP 52 128 128 ASP ASP B . n B 1 53 ASN 53 129 129 ASN ASN B . n B 1 54 LYS 54 130 130 LYS LYS B . n B 1 55 LEU 55 131 131 LEU LEU B . n B 1 56 VAL 56 132 132 VAL VAL B . n B 1 57 GLY 57 133 133 GLY GLY B . n B 1 58 ASN 58 134 134 ASN ASN B . n B 1 59 ILE 59 135 135 ILE ILE B . n B 1 60 SER 60 136 136 SER SER B . n B 1 61 TRP 61 137 137 TRP TRP B . n B 1 62 ARG 62 138 138 ARG ARG B . n B 1 63 ILE 63 139 139 ILE ILE B . n B 1 64 LYS 64 140 140 LYS LYS B . n B 1 65 THR 65 141 141 THR THR B . n B 1 66 LEU 66 142 142 LEU LEU B . n B 1 67 ASP 67 143 143 ASP ASP B . n B 1 68 SER 68 144 144 SER SER B . n B 1 69 GLY 69 145 145 GLY GLY B . n B 1 70 PHE 70 146 146 PHE PHE B . n B 1 71 PHE 71 147 147 PHE PHE B . n B 1 72 THR 72 148 148 THR THR B . n B 1 73 ARG 73 149 149 ARG ARG B . n B 1 74 SER 74 150 150 SER SER B . n B 1 75 ALA 75 151 151 ALA ALA B . n B 1 76 VAL 76 152 152 VAL VAL B . n B 1 77 GLN 77 153 153 GLN GLN B . n B 1 78 LYS 78 154 154 LYS LYS B . n B 1 79 PHE 79 155 155 PHE PHE B . n B 1 80 VAL 80 156 156 VAL VAL B . n B 1 81 GLN 81 157 157 GLN GLN B . n B 1 82 ASP 82 158 158 ASP ASP B . n B 1 83 PRO 83 159 159 PRO PRO B . n B 1 84 ASN 84 160 160 ASN ASN B . n B 1 85 GLN 85 161 161 GLN GLN B . n B 1 86 PRO 86 162 162 PRO PRO B . n B 1 87 GLY 87 163 163 GLY GLY B . n B 1 88 VAL 88 164 164 VAL VAL B . n B 1 89 LEU 89 165 165 LEU LEU B . n B 1 90 TYR 90 166 166 TYR TYR B . n B 1 91 ASN 91 167 167 ASN ASN B . n B 1 92 HIS 92 168 168 HIS HIS B . n B 1 93 ASP 93 169 169 ASP ASP B . n B 1 94 ASN 94 170 170 ASN ASN B . n B 1 95 GLU 95 171 171 GLU GLU B . n B 1 96 TYR 96 172 172 TYR TYR B . n B 1 97 LEU 97 173 173 LEU LEU B . n B 1 98 HIS 98 174 174 HIS HIS B . n B 1 99 TYR 99 175 175 TYR TYR B . n B 1 100 GLN 100 176 176 GLN GLN B . n B 1 101 ASP 101 177 177 ASP ASP B . n B 1 102 ASP 102 178 178 ASP ASP B . n B 1 103 TRP 103 179 179 TRP TRP B . n B 1 104 TYR 104 180 180 TYR TYR B . n B 1 105 ILE 105 181 181 ILE ILE B . n B 1 106 LEU 106 182 182 LEU LEU B . n B 1 107 SER 107 183 183 SER SER B . n B 1 108 SER 108 184 184 SER SER B . n B 1 109 LYS 109 185 185 LYS LYS B . n B 1 110 ILE 110 186 186 ILE ILE B . n B 1 111 GLU 111 187 187 GLU GLU B . n B 1 112 ASN 112 188 188 ASN ASN B . n B 1 113 LYS 113 189 189 LYS LYS B . n B 1 114 PRO 114 190 190 PRO PRO B . n B 1 115 GLU 115 191 191 GLU GLU B . n B 1 116 ASP 116 192 192 ASP ASP B . n B 1 117 TYR 117 193 193 TYR TYR B . n B 1 118 ILE 118 194 194 ILE ILE B . n B 1 119 PHE 119 195 195 PHE PHE B . n B 1 120 VAL 120 196 196 VAL VAL B . n B 1 121 TYR 121 197 197 TYR TYR B . n B 1 122 TYR 122 198 198 TYR TYR B . n B 1 123 ARG 123 199 199 ARG ARG B . n B 1 124 GLY 124 200 200 GLY GLY B . n B 1 125 ARG 125 201 201 ARG ARG B . n B 1 126 ASN 126 202 202 ASN ASN B . n B 1 127 ASP 127 203 203 ASP ASP B . n B 1 128 ALA 128 204 204 ALA ALA B . n B 1 129 TRP 129 205 205 TRP TRP B . n B 1 130 ASP 130 206 206 ASP ASP B . n B 1 131 GLY 131 207 207 GLY GLY B . n B 1 132 TYR 132 208 208 TYR TYR B . n B 1 133 GLY 133 209 209 GLY GLY B . n B 1 134 GLY 134 210 210 GLY GLY B . n B 1 135 ALA 135 211 211 ALA ALA B . n B 1 136 VAL 136 212 212 VAL VAL B . n B 1 137 VAL 137 213 213 VAL VAL B . n B 1 138 TYR 138 214 214 TYR TYR B . n B 1 139 THR 139 215 215 THR THR B . n B 1 140 ARG 140 216 216 ARG ARG B . n B 1 141 SER 141 217 217 SER SER B . n B 1 142 SER 142 218 218 SER SER B . n B 1 143 VAL 143 219 219 VAL VAL B . n B 1 144 LEU 144 220 220 LEU LEU B . n B 1 145 PRO 145 221 221 PRO PRO B . n B 1 146 ASN 146 222 222 ASN ASN B . n B 1 147 SER 147 223 223 SER SER B . n B 1 148 ILE 148 224 224 ILE ILE B . n B 1 149 ILE 149 225 225 ILE ILE B . n B 1 150 PRO 150 226 226 PRO PRO B . n B 1 151 GLU 151 227 227 GLU GLU B . n B 1 152 LEU 152 228 228 LEU LEU B . n B 1 153 GLU 153 229 229 GLU GLU B . n B 1 154 LYS 154 230 230 LYS LYS B . n B 1 155 ALA 155 231 231 ALA ALA B . n B 1 156 ALA 156 232 232 ALA ALA B . n B 1 157 LYS 157 233 233 LYS LYS B . n B 1 158 SER 158 234 234 SER SER B . n B 1 159 ILE 159 235 235 ILE ILE B . n B 1 160 GLY 160 236 236 GLY GLY B . n B 1 161 ARG 161 237 237 ARG ARG B . n B 1 162 ASP 162 238 238 ASP ASP B . n B 1 163 PHE 163 239 239 PHE PHE B . n B 1 164 SER 164 240 240 SER SER B . n B 1 165 THR 165 241 241 THR THR B . n B 1 166 PHE 166 242 242 PHE PHE B . n B 1 167 ILE 167 243 243 ILE ILE B . n B 1 168 ARG 168 244 244 ARG ARG B . n B 1 169 THR 169 245 245 THR THR B . n B 1 170 ASP 170 246 246 ASP ASP B . n B 1 171 ASN 171 247 247 ASN ASN B . n B 1 172 THR 172 248 248 THR THR B . n B 1 173 CYS 173 249 249 CYS CYS B . n B 1 174 GLY 174 250 250 GLY GLY B . n B 1 175 PRO 175 251 251 PRO PRO B . n B 1 176 GLU 176 252 ? ? ? B . n B 1 177 PRO 177 253 ? ? ? B . n B 1 178 ARG 178 254 ? ? ? B . n B 1 179 SER 179 255 ? ? ? B . n B 1 180 HIS 180 256 ? ? ? B . n B 1 181 HIS 181 257 ? ? ? B . n B 1 182 HIS 182 258 ? ? ? B . n B 1 183 HIS 183 259 ? ? ? B . n B 1 184 HIS 184 260 ? ? ? B . n B 1 185 HIS 185 261 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 2 A,C,F 2 1 B,D,E,G 3 1,2 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2770 ? 1 MORE -28.6 ? 1 'SSA (A^2)' 17960 ? 2 'ABSA (A^2)' 4120 ? 2 MORE -33.6 ? 2 'SSA (A^2)' 16610 ? 3 'ABSA (A^2)' 15760 ? 3 MORE -118.8 ? 3 'SSA (A^2)' 25700 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 -x+1/2,y,-z+3/4 -1.0000000000 0.0000000000 0.0000000000 61.1485000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 118.7527500000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 437 ? F HOH . 2 1 B HOH 496 ? G HOH . 3 1 B HOH 513 ? G HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 483 ? 1_555 GD ? C GD . ? A GD 401 ? 1_555 N ? A GLU 5 ? A GLU 81 ? 1_555 115.5 ? 2 O ? F HOH . ? A HOH 483 ? 1_555 GD ? C GD . ? A GD 401 ? 1_555 O ? A GLU 5 ? A GLU 81 ? 1_555 87.3 ? 3 N ? A GLU 5 ? A GLU 81 ? 1_555 GD ? C GD . ? A GD 401 ? 1_555 O ? A GLU 5 ? A GLU 81 ? 1_555 61.5 ? 4 O ? F HOH . ? A HOH 483 ? 1_555 GD ? C GD . ? A GD 401 ? 1_555 O ? F HOH . ? A HOH 474 ? 1_555 130.4 ? 5 N ? A GLU 5 ? A GLU 81 ? 1_555 GD ? C GD . ? A GD 401 ? 1_555 O ? F HOH . ? A HOH 474 ? 1_555 90.2 ? 6 O ? A GLU 5 ? A GLU 81 ? 1_555 GD ? C GD . ? A GD 401 ? 1_555 O ? F HOH . ? A HOH 474 ? 1_555 141.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 DNA . ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 SOLVE . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CB A GLU 81 ? ? O A HOH 465 ? ? 2.08 2 1 OG B SER 136 ? ? NH2 B ARG 138 ? ? 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 434 ? ? 1_555 O B HOH 485 ? ? 5_555 2.15 2 1 O A HOH 489 ? ? 1_555 O B HOH 462 ? ? 5_555 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 199 ? ? CZ A ARG 199 ? ? NH1 A ARG 199 ? ? 123.31 120.30 3.01 0.50 N 2 1 CB B ASP 169 ? ? CG B ASP 169 ? ? OD1 B ASP 169 ? ? 124.07 118.30 5.77 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 169 ? ? 40.35 -11.33 2 1 GLU A 171 ? ? 61.46 -134.48 3 1 TRP A 205 ? ? -174.40 146.44 4 1 ASP B 169 ? ? 40.96 -12.28 5 1 GLU B 171 ? ? 51.04 -113.07 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 HIS A 168 ? ? ASP A 169 ? ? 129.31 2 1 HIS B 168 ? ? ASP B 169 ? ? 130.25 3 1 CYS B 249 ? ? GLY B 250 ? ? -119.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 77 ? A MET 1 2 1 Y 1 A ASP 78 ? A ASP 2 3 1 Y 1 A LEU 79 ? A LEU 3 4 1 Y 1 A GLY 80 ? A GLY 4 5 1 Y 1 A GLU 252 ? A GLU 176 6 1 Y 1 A PRO 253 ? A PRO 177 7 1 Y 1 A ARG 254 ? A ARG 178 8 1 Y 1 A SER 255 ? A SER 179 9 1 Y 1 A HIS 256 ? A HIS 180 10 1 Y 1 A HIS 257 ? A HIS 181 11 1 Y 1 A HIS 258 ? A HIS 182 12 1 Y 1 A HIS 259 ? A HIS 183 13 1 Y 1 A HIS 260 ? A HIS 184 14 1 Y 1 A HIS 261 ? A HIS 185 15 1 Y 1 B MET 77 ? B MET 1 16 1 Y 1 B ASP 78 ? B ASP 2 17 1 Y 1 B LEU 79 ? B LEU 3 18 1 Y 1 B GLY 80 ? B GLY 4 19 1 Y 1 B GLU 81 ? B GLU 5 20 1 Y 1 B GLU 252 ? B GLU 176 21 1 Y 1 B PRO 253 ? B PRO 177 22 1 Y 1 B ARG 254 ? B ARG 178 23 1 Y 1 B SER 255 ? B SER 179 24 1 Y 1 B HIS 256 ? B HIS 180 25 1 Y 1 B HIS 257 ? B HIS 181 26 1 Y 1 B HIS 258 ? B HIS 182 27 1 Y 1 B HIS 259 ? B HIS 183 28 1 Y 1 B HIS 260 ? B HIS 184 29 1 Y 1 B HIS 261 ? B HIS 185 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'GADOLINIUM ATOM' GD 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GD 1 401 401 GD GD A . D 2 GD 1 402 402 GD GD B . E 2 GD 1 403 403 GD GD B . F 3 HOH 1 402 2 HOH HOH A . F 3 HOH 2 403 3 HOH HOH A . F 3 HOH 3 404 4 HOH HOH A . F 3 HOH 4 405 9 HOH HOH A . F 3 HOH 5 406 15 HOH HOH A . F 3 HOH 6 407 19 HOH HOH A . F 3 HOH 7 408 20 HOH HOH A . F 3 HOH 8 409 23 HOH HOH A . F 3 HOH 9 410 26 HOH HOH A . F 3 HOH 10 411 27 HOH HOH A . F 3 HOH 11 412 28 HOH HOH A . F 3 HOH 12 413 29 HOH HOH A . F 3 HOH 13 414 32 HOH HOH A . F 3 HOH 14 415 37 HOH HOH A . F 3 HOH 15 416 38 HOH HOH A . F 3 HOH 16 417 39 HOH HOH A . F 3 HOH 17 418 41 HOH HOH A . F 3 HOH 18 419 42 HOH HOH A . F 3 HOH 19 420 45 HOH HOH A . F 3 HOH 20 421 47 HOH HOH A . F 3 HOH 21 422 50 HOH HOH A . F 3 HOH 22 423 53 HOH HOH A . F 3 HOH 23 424 56 HOH HOH A . F 3 HOH 24 425 60 HOH HOH A . F 3 HOH 25 426 61 HOH HOH A . F 3 HOH 26 427 62 HOH HOH A . F 3 HOH 27 428 64 HOH HOH A . F 3 HOH 28 429 72 HOH HOH A . F 3 HOH 29 430 75 HOH HOH A . F 3 HOH 30 431 79 HOH HOH A . F 3 HOH 31 432 82 HOH HOH A . F 3 HOH 32 433 84 HOH HOH A . F 3 HOH 33 434 86 HOH HOH A . F 3 HOH 34 435 87 HOH HOH A . F 3 HOH 35 436 88 HOH HOH A . F 3 HOH 36 437 89 HOH HOH A . F 3 HOH 37 438 90 HOH HOH A . F 3 HOH 38 439 92 HOH HOH A . F 3 HOH 39 440 93 HOH HOH A . F 3 HOH 40 441 97 HOH HOH A . F 3 HOH 41 442 100 HOH HOH A . F 3 HOH 42 443 101 HOH HOH A . F 3 HOH 43 444 104 HOH HOH A . F 3 HOH 44 445 106 HOH HOH A . F 3 HOH 45 446 107 HOH HOH A . F 3 HOH 46 447 108 HOH HOH A . F 3 HOH 47 448 109 HOH HOH A . F 3 HOH 48 449 110 HOH HOH A . F 3 HOH 49 450 113 HOH HOH A . F 3 HOH 50 451 120 HOH HOH A . F 3 HOH 51 452 123 HOH HOH A . F 3 HOH 52 453 124 HOH HOH A . F 3 HOH 53 454 125 HOH HOH A . F 3 HOH 54 455 126 HOH HOH A . F 3 HOH 55 456 127 HOH HOH A . F 3 HOH 56 457 129 HOH HOH A . F 3 HOH 57 458 132 HOH HOH A . F 3 HOH 58 459 133 HOH HOH A . F 3 HOH 59 460 136 HOH HOH A . F 3 HOH 60 461 137 HOH HOH A . F 3 HOH 61 462 138 HOH HOH A . F 3 HOH 62 463 139 HOH HOH A . F 3 HOH 63 464 140 HOH HOH A . F 3 HOH 64 465 142 HOH HOH A . F 3 HOH 65 466 147 HOH HOH A . F 3 HOH 66 467 151 HOH HOH A . F 3 HOH 67 468 154 HOH HOH A . F 3 HOH 68 469 155 HOH HOH A . F 3 HOH 69 470 156 HOH HOH A . F 3 HOH 70 471 157 HOH HOH A . F 3 HOH 71 472 158 HOH HOH A . F 3 HOH 72 473 160 HOH HOH A . F 3 HOH 73 474 161 HOH HOH A . F 3 HOH 74 475 167 HOH HOH A . F 3 HOH 75 476 171 HOH HOH A . F 3 HOH 76 477 172 HOH HOH A . F 3 HOH 77 478 174 HOH HOH A . F 3 HOH 78 479 175 HOH HOH A . F 3 HOH 79 480 176 HOH HOH A . F 3 HOH 80 481 178 HOH HOH A . F 3 HOH 81 482 184 HOH HOH A . F 3 HOH 82 483 185 HOH HOH A . F 3 HOH 83 484 186 HOH HOH A . F 3 HOH 84 485 187 HOH HOH A . F 3 HOH 85 486 188 HOH HOH A . F 3 HOH 86 487 191 HOH HOH A . F 3 HOH 87 488 11 HOH HOH A . F 3 HOH 88 489 166 HOH HOH A . G 3 HOH 1 452 122 HOH HOH B . G 3 HOH 2 453 1 HOH HOH B . G 3 HOH 3 454 6 HOH HOH B . G 3 HOH 4 455 7 HOH HOH B . G 3 HOH 5 456 8 HOH HOH B . G 3 HOH 6 457 10 HOH HOH B . G 3 HOH 7 458 12 HOH HOH B . G 3 HOH 8 459 13 HOH HOH B . G 3 HOH 9 460 16 HOH HOH B . G 3 HOH 10 461 17 HOH HOH B . G 3 HOH 11 462 18 HOH HOH B . G 3 HOH 12 463 21 HOH HOH B . G 3 HOH 13 464 24 HOH HOH B . G 3 HOH 14 465 25 HOH HOH B . G 3 HOH 15 466 30 HOH HOH B . G 3 HOH 16 467 31 HOH HOH B . G 3 HOH 17 468 33 HOH HOH B . G 3 HOH 18 469 34 HOH HOH B . G 3 HOH 19 470 35 HOH HOH B . G 3 HOH 20 471 36 HOH HOH B . G 3 HOH 21 472 40 HOH HOH B . G 3 HOH 22 473 43 HOH HOH B . G 3 HOH 23 474 44 HOH HOH B . G 3 HOH 24 475 46 HOH HOH B . G 3 HOH 25 476 48 HOH HOH B . G 3 HOH 26 477 49 HOH HOH B . G 3 HOH 27 478 51 HOH HOH B . G 3 HOH 28 479 52 HOH HOH B . G 3 HOH 29 480 54 HOH HOH B . G 3 HOH 30 481 55 HOH HOH B . G 3 HOH 31 482 57 HOH HOH B . G 3 HOH 32 483 58 HOH HOH B . G 3 HOH 33 484 59 HOH HOH B . G 3 HOH 34 485 63 HOH HOH B . G 3 HOH 35 486 65 HOH HOH B . G 3 HOH 36 487 66 HOH HOH B . G 3 HOH 37 488 67 HOH HOH B . G 3 HOH 38 489 70 HOH HOH B . G 3 HOH 39 490 74 HOH HOH B . G 3 HOH 40 491 76 HOH HOH B . G 3 HOH 41 492 77 HOH HOH B . G 3 HOH 42 493 80 HOH HOH B . G 3 HOH 43 494 81 HOH HOH B . G 3 HOH 44 495 85 HOH HOH B . G 3 HOH 45 496 91 HOH HOH B . G 3 HOH 46 497 94 HOH HOH B . G 3 HOH 47 498 95 HOH HOH B . G 3 HOH 48 499 96 HOH HOH B . G 3 HOH 49 500 98 HOH HOH B . G 3 HOH 50 501 99 HOH HOH B . G 3 HOH 51 502 102 HOH HOH B . G 3 HOH 52 503 103 HOH HOH B . G 3 HOH 53 504 105 HOH HOH B . G 3 HOH 54 505 111 HOH HOH B . G 3 HOH 55 506 112 HOH HOH B . G 3 HOH 56 507 114 HOH HOH B . G 3 HOH 57 508 115 HOH HOH B . G 3 HOH 58 509 116 HOH HOH B . G 3 HOH 59 510 117 HOH HOH B . G 3 HOH 60 511 118 HOH HOH B . G 3 HOH 61 512 119 HOH HOH B . G 3 HOH 62 513 121 HOH HOH B . G 3 HOH 63 514 128 HOH HOH B . G 3 HOH 64 515 130 HOH HOH B . G 3 HOH 65 516 131 HOH HOH B . G 3 HOH 66 517 134 HOH HOH B . G 3 HOH 67 518 135 HOH HOH B . G 3 HOH 68 519 141 HOH HOH B . G 3 HOH 69 520 143 HOH HOH B . G 3 HOH 70 521 144 HOH HOH B . G 3 HOH 71 522 145 HOH HOH B . G 3 HOH 72 523 146 HOH HOH B . G 3 HOH 73 524 148 HOH HOH B . G 3 HOH 74 525 150 HOH HOH B . G 3 HOH 75 526 152 HOH HOH B . G 3 HOH 76 527 162 HOH HOH B . G 3 HOH 77 528 163 HOH HOH B . G 3 HOH 78 529 164 HOH HOH B . G 3 HOH 79 530 165 HOH HOH B . G 3 HOH 80 531 168 HOH HOH B . G 3 HOH 81 532 169 HOH HOH B . G 3 HOH 82 533 170 HOH HOH B . G 3 HOH 83 534 173 HOH HOH B . G 3 HOH 84 535 179 HOH HOH B . G 3 HOH 85 536 180 HOH HOH B . G 3 HOH 86 537 182 HOH HOH B . G 3 HOH 87 538 183 HOH HOH B . G 3 HOH 88 539 189 HOH HOH B . G 3 HOH 89 540 190 HOH HOH B . G 3 HOH 90 541 192 HOH HOH B . #