data_3CR1 # _entry.id 3CR1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CR1 pdb_00003cr1 10.2210/pdb3cr1/pdb NDB UR0141 ? ? RCSB RCSB047109 ? ? WWPDB D_1000047109 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3B5S ;DAP38, A-1 2'Omethyl mutant hairpin ribozyme ; unspecified PDB 3B5F ;DAP38, A-1/G+1 2'-5' linkage mutant hairpin ribozyme ; unspecified PDB 3BBI ;AP38, A-1 2'Omethyl mutant hairpin ribozyme ; unspecified PDB 3B91 ;AP38, A-1/G+1 2'-5' linkage mutant hairpin ribozyme ; unspecified PDB 3BBM ;C38, A-1 2'Omethyl mutant hairpin ribozyme ; unspecified PDB 3BBK ;C38, A-1/G+1 2'-5' linkage mutant hairpin ribozyme ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CR1 _pdbx_database_status.recvd_initial_deposition_date 2008-04-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Salter, J.D.' 1 'Wedekind, J.E.' 2 # _citation.id primary _citation.title 'Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme.' _citation.journal_abbrev Rna _citation.journal_volume 14 _citation.page_first 1600 _citation.page_last 1616 _citation.year 2008 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18596253 _citation.pdbx_database_id_DOI 10.1261/rna.1055308 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'MacElrevey, C.' 1 ? primary 'Salter, J.D.' 2 ? primary 'Krucinska, J.' 3 ? primary 'Wedekind, J.E.' 4 ? # _cell.entry_id 3CR1 _cell.length_a 93.640 _cell.length_b 93.640 _cell.length_c 133.610 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CR1 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3') ; 4066.497 1 ? ? ? '13-mer substrate strand' 2 polymer syn 'loop A and B ribozyme strand' 9762.989 1 ? ? ? ? 3 polymer syn ;RNA (5'-R(*UP*CP*GP*UP*GP*GP*UP*CP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3') ; 5967.544 1 ? ? ? 'loop B ribozyme strand' 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 water nat water 18.015 33 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'UCCC(A2M)GUCCACCG' UCCCAGUCCACCG A ? 2 'polydeoxyribonucleotide/polyribonucleotide hybrid' no yes 'CGGUGAGAAGGG(S9L)GGCAGAGAAACACACGA' CGGUGAGAAGGGXGGCAGAGAAACACACGA B ? 3 polyribonucleotide no no UCGUGGUCCAUUACCUGCC UCGUGGUCCAUUACCUGCC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 C n 1 4 C n 1 5 A2M n 1 6 G n 1 7 U n 1 8 C n 1 9 C n 1 10 A n 1 11 C n 1 12 C n 1 13 G n 2 1 C n 2 2 G n 2 3 G n 2 4 U n 2 5 G n 2 6 A n 2 7 G n 2 8 A n 2 9 A n 2 10 G n 2 11 G n 2 12 G n 2 13 S9L n 2 14 G n 2 15 G n 2 16 C n 2 17 A n 2 18 G n 2 19 A n 2 20 G n 2 21 A n 2 22 A n 2 23 A n 2 24 C n 2 25 A n 2 26 C n 2 27 A n 2 28 C n 2 29 G n 2 30 A n 3 1 U n 3 2 C n 3 3 G n 3 4 U n 3 5 G n 3 6 G n 3 7 U n 3 8 C n 3 9 C n 3 10 A n 3 11 U n 3 12 U n 3 13 A n 3 14 C n 3 15 C n 3 16 U n 3 17 G n 3 18 C n 3 19 C n # loop_ _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 3CR1 1 PDB 3CR1 UCCCAGUCCACCG 1 ? 2 3CR1 2 PDB 3CR1 'CGGUGAGAAGGG(S9L)GGCAGAGAAACACACGA' 1 ? 3 3CR1 3 PDB 3CR1 UCGUGGUCCAUUACCUGCC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3CR1 A 1 ? 13 ? 3CR1 1 ? 13 ? 1 13 2 2 3CR1 B 1 ? 30 ? 3CR1 2 ? 31 ? 2 31 3 3 3CR1 C 1 ? 19 ? 3CR1 31 ? 49 ? 31 49 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 S9L non-polymer . '2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE' ? 'C6 H15 O7 P' 230.153 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3CR1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.27 _exptl_crystal.density_percent_sol 71.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;PEG2000 MME, lithium sulfate, magnesium chloride, spermidine, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG2000 MME' ? ? ? 1 2 1 'lithium sulfate' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 spermidine ? ? ? 1 5 1 'sodium cacodylate' ? ? ? 1 6 2 'PEG2000 MME' ? ? ? 1 7 2 'lithium sulfate' ? ? ? 1 8 2 'magnesium chloride' ? ? ? 1 9 2 spermidine ? ? ? 1 10 2 'sodium cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-06-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'bent triangular asymmetric cut si(111) monochromator, RH-coated si for vertical focusing' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.977 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.977 # _reflns.entry_id 3CR1 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.89 _reflns.d_resolution_high 2.25 _reflns.number_obs 16729 _reflns.number_all ? _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.8 _reflns.B_iso_Wilson_estimate 47.4 _reflns.pdbx_redundancy 11.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.541 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 11.01 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CR1 _refine.ls_number_reflns_obs 16725 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I -3.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 941903.55 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.89 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 98.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.221 _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.9 _refine.ls_number_reflns_R_free 1314 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 68.1 _refine.aniso_B[1][1] -7.35 _refine.aniso_B[2][2] -7.35 _refine.aniso_B[3][3] 14.69 _refine.aniso_B[1][2] -4.64 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.335642 _refine.solvent_model_param_bsol 52.9068 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'Bulk solvent model used' _refine.pdbx_starting_model 2OUE _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Parkinson et al. Acta Cryst. D, 52, 57-64 (1996)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3CR1 _refine_analyze.Luzzati_coordinate_error_obs 0.42 _refine_analyze.Luzzati_sigma_a_obs 0.58 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.60 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1309 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1348 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 30.89 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 16.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.22 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.39 _refine_ls_shell.number_reflns_R_work 2538 _refine_ls_shell.R_factor_R_work 0.414 _refine_ls_shell.percent_reflns_obs 99.6 _refine_ls_shell.R_factor_R_free 0.435 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 7.8 _refine_ls_shell.number_reflns_R_free 215 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 dna-rna0107.par dna-rna0107.top 'X-RAY DIFFRACTION' 2 ? water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3CR1 _struct.title 'crystal structure of a minimal, mutant, all-RNA hairpin ribozyme (A38C, A-1OMA) grown from MgCl2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CR1 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'ribozyme, A38, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 4 "O3'" ? ? ? 1_555 A A2M 5 P ? ? A C 4 A A2M 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale one ? A A2M 5 "O3'" ? ? ? 1_555 A G 6 P ? ? A A2M 5 A G 6 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale3 covale both ? B G 12 "O3'" ? ? ? 1_555 B S9L 13 P ? ? B G 13 B S9L 14 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale4 covale both ? B S9L 13 "O3'" ? ? ? 1_555 B G 14 P ? ? B S9L 14 B G 15 1_555 ? ? ? ? ? ? ? 1.610 ? ? metalc1 metalc ? ? E MG . MG ? ? ? 1_555 B G 20 N7 ? ? B MG 1 B G 21 1_555 ? ? ? ? ? ? ? 2.405 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A2M 5 N3 ? ? ? 1_555 B A 8 N6 ? ? A A2M 5 B A 9 1_555 ? ? ? ? ? ? 'A2M-A MISPAIR' ? ? ? hydrog11 hydrog ? ? A A2M 5 N3 ? ? ? 1_555 B A 9 N6 ? ? A A2M 5 B A 10 1_555 ? ? ? ? ? ? 'A2M-A MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 24 N3 ? ? A G 6 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 24 O2 ? ? A G 6 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 24 N4 ? ? A G 6 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 O4 ? ? ? 1_555 B G 7 N2 ? ? A U 7 B G 8 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A C 8 N4 ? ? ? 1_555 B A 6 N1 ? ? A C 8 B A 7 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog17 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 9 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 9 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 9 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 10 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 10 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 11 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 11 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 11 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 12 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 12 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 12 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 13 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 13 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 13 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 14 N1 ? ? ? 1_555 C C 19 N3 ? ? B G 15 C C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B G 14 N2 ? ? ? 1_555 C C 19 O2 ? ? B G 15 C C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 14 O6 ? ? ? 1_555 C C 19 N4 ? ? B G 15 C C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 15 N1 ? ? ? 1_555 C C 18 N3 ? ? B G 16 C C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 15 N2 ? ? ? 1_555 C C 18 O2 ? ? B G 16 C C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 15 O6 ? ? ? 1_555 C C 18 N4 ? ? B G 16 C C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 16 N3 ? ? ? 1_555 C G 17 N1 ? ? B C 17 C G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 16 N4 ? ? ? 1_555 C G 17 O6 ? ? B C 17 C G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 16 O2 ? ? ? 1_555 C G 17 N2 ? ? B C 17 C G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B A 17 N1 ? ? ? 1_555 C U 16 N3 ? ? B A 18 C U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B A 17 N6 ? ? ? 1_555 C U 16 O4 ? ? B A 18 C U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 18 N1 ? ? ? 1_555 C C 15 N3 ? ? B G 19 C C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 18 N2 ? ? ? 1_555 C C 15 O2 ? ? B G 19 C C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 18 O6 ? ? ? 1_555 C C 15 N4 ? ? B G 19 C C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B A 19 N1 ? ? ? 1_555 C C 14 N4 ? ? B A 20 C C 44 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog46 hydrog ? ? B G 20 N2 ? ? ? 1_555 C A 13 N7 ? ? B G 21 C A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog47 hydrog ? ? B G 20 N3 ? ? ? 1_555 C A 13 N6 ? ? B G 21 C A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog48 hydrog ? ? B A 21 N6 ? ? ? 1_555 C U 11 O2 ? ? B A 22 C U 41 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog49 hydrog ? ? B A 21 N7 ? ? ? 1_555 C U 11 N3 ? ? B A 22 C U 41 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? B A 22 N6 ? ? ? 1_555 C A 10 N1 ? ? B A 23 C A 40 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog51 hydrog ? ? B A 22 N7 ? ? ? 1_555 C A 10 N6 ? ? B A 23 C A 40 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog52 hydrog ? ? B A 23 N6 ? ? ? 1_555 C C 8 O2 ? ? B A 24 C C 38 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog53 hydrog ? ? B A 25 N1 ? ? ? 1_555 C G 6 N1 ? ? B A 26 C G 36 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog54 hydrog ? ? B A 25 N6 ? ? ? 1_555 C G 6 O6 ? ? B A 26 C G 36 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog55 hydrog ? ? B C 26 N3 ? ? ? 1_555 C G 5 N1 ? ? B C 27 C G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 26 N4 ? ? ? 1_555 C G 5 O6 ? ? B C 27 C G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 26 O2 ? ? ? 1_555 C G 5 N2 ? ? B C 27 C G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B A 27 N1 ? ? ? 1_555 C U 4 N3 ? ? B A 28 C U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B A 27 N6 ? ? ? 1_555 C U 4 O4 ? ? B A 28 C U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 28 N3 ? ? ? 1_555 C G 3 N1 ? ? B C 29 C G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 28 N4 ? ? ? 1_555 C G 3 O6 ? ? B C 29 C G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 28 O2 ? ? ? 1_555 C G 3 N2 ? ? B C 29 C G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 29 N1 ? ? ? 1_555 C C 2 N3 ? ? B G 30 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 29 N2 ? ? ? 1_555 C C 2 O2 ? ? B G 30 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 29 O6 ? ? ? 1_555 C C 2 N4 ? ? B G 30 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B A 30 N1 ? ? ? 1_555 C U 1 N3 ? ? B A 31 C U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B A 30 N6 ? ? ? 1_555 C U 1 O4 ? ? B A 31 C U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC2 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 14 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 14' # _struct_site_gen.id 1 _struct_site_gen.site_id AC2 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id HOH _struct_site_gen.label_asym_id F _struct_site_gen.label_seq_id . _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id HOH _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 18 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 3CR1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CR1 _atom_sites.fract_transf_matrix[1][1] 0.010679 _atom_sites.fract_transf_matrix[1][2] 0.006166 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012331 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007484 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 A2M 5 5 5 A2M A2M A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n B 2 1 C 1 2 2 C C B . n B 2 2 G 2 3 3 G G B . n B 2 3 G 3 4 4 G G B . n B 2 4 U 4 5 5 U U B . n B 2 5 G 5 6 6 G G B . n B 2 6 A 6 7 7 A A B . n B 2 7 G 7 8 8 G G B . n B 2 8 A 8 9 9 A A B . n B 2 9 A 9 10 10 A A B . n B 2 10 G 10 11 11 G G B . n B 2 11 G 11 12 12 G G B . n B 2 12 G 12 13 13 G G B . n B 2 13 S9L 13 14 14 S9L S9L B . n B 2 14 G 14 15 15 G G B . n B 2 15 G 15 16 16 G G B . n B 2 16 C 16 17 17 C C B . n B 2 17 A 17 18 18 A A B . n B 2 18 G 18 19 19 G G B . n B 2 19 A 19 20 20 A A B . n B 2 20 G 20 21 21 G G B . n B 2 21 A 21 22 22 A A B . n B 2 22 A 22 23 23 A A B . n B 2 23 A 23 24 24 A A B . n B 2 24 C 24 25 25 C C B . n B 2 25 A 25 26 26 A A B . n B 2 26 C 26 27 27 C C B . n B 2 27 A 27 28 28 A A B . n B 2 28 C 28 29 29 C C B . n B 2 29 G 29 30 30 G G B . n B 2 30 A 30 31 31 A A B . n C 3 1 U 1 31 31 U U C . n C 3 2 C 2 32 32 C C C . n C 3 3 G 3 33 33 G G C . n C 3 4 U 4 34 34 U U C . n C 3 5 G 5 35 35 G G C . n C 3 6 G 6 36 36 G G C . n C 3 7 U 7 37 37 U U C . n C 3 8 C 8 38 38 C C C . n C 3 9 C 9 39 39 C C C . n C 3 10 A 10 40 40 A A C . n C 3 11 U 11 41 41 U U C . n C 3 12 U 12 42 42 U U C . n C 3 13 A 13 43 43 A A C . n C 3 14 C 14 44 44 C C C . n C 3 15 C 15 45 45 C C C . n C 3 16 U 16 46 46 U U C . n C 3 17 G 17 47 47 G G C . n C 3 18 C 18 48 48 C C C . n C 3 19 C 19 49 49 C C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 1 14 1 SO4 SO4 A . E 5 MG 1 1 1 MG MG B . F 6 HOH 1 15 2 HOH HOH A . F 6 HOH 2 16 10 HOH HOH A . F 6 HOH 3 17 13 HOH HOH A . F 6 HOH 4 18 14 HOH HOH A . F 6 HOH 5 19 16 HOH HOH A . F 6 HOH 6 20 20 HOH HOH A . F 6 HOH 7 21 27 HOH HOH A . F 6 HOH 8 22 31 HOH HOH A . G 6 HOH 1 32 3 HOH HOH B . G 6 HOH 2 33 5 HOH HOH B . G 6 HOH 3 34 7 HOH HOH B . G 6 HOH 4 35 11 HOH HOH B . G 6 HOH 5 36 12 HOH HOH B . G 6 HOH 6 37 15 HOH HOH B . G 6 HOH 7 38 17 HOH HOH B . G 6 HOH 8 39 18 HOH HOH B . G 6 HOH 9 40 21 HOH HOH B . G 6 HOH 10 41 22 HOH HOH B . G 6 HOH 11 42 23 HOH HOH B . G 6 HOH 12 43 25 HOH HOH B . G 6 HOH 13 44 28 HOH HOH B . G 6 HOH 14 45 30 HOH HOH B . G 6 HOH 15 46 33 HOH HOH B . H 6 HOH 1 50 1 HOH HOH C . H 6 HOH 2 51 4 HOH HOH C . H 6 HOH 3 52 6 HOH HOH C . H 6 HOH 4 53 8 HOH HOH C . H 6 HOH 5 54 9 HOH HOH C . H 6 HOH 6 55 19 HOH HOH C . H 6 HOH 7 56 24 HOH HOH C . H 6 HOH 8 57 26 HOH HOH C . H 6 HOH 9 58 29 HOH HOH C . H 6 HOH 10 59 32 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id A2M _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A2M _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5590 ? 1 MORE -25 ? 1 'SSA (A^2)' 9380 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id U _pdbx_struct_special_symmetry.auth_seq_id 1 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id A _pdbx_struct_special_symmetry.label_comp_id U _pdbx_struct_special_symmetry.label_seq_id 1 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_special_symmetry 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 3 'Structure model' '_struct_ref_seq.db_align_beg' 17 3 'Structure model' '_struct_ref_seq.db_align_end' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data collection' . ? 2 CrystalClear 'data reduction' . ? 3 CrystalClear 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A U 1 ? A "C1'" A U 1 ? A "C2'" A U 1 ? A 105.11 112.00 -6.89 1.10 N 2 1 N3 A U 1 ? A C4 A U 1 ? A O4 A U 1 ? A 124.24 119.40 4.84 0.70 N 3 1 C5 A U 1 ? A C4 A U 1 ? A O4 A U 1 ? A 120.05 125.90 -5.85 0.60 N 4 1 N9 A G 6 ? ? "C1'" A G 6 ? ? "C2'" A G 6 ? ? 124.45 114.00 10.45 1.30 N 5 1 "C5'" B G 8 ? ? "C4'" B G 8 ? ? "C3'" B G 8 ? ? 106.53 115.20 -8.67 1.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A2M P P N N 38 A2M OP1 O N N 39 A2M OP3 O N N 40 A2M "O5'" O N N 41 A2M "C5'" C N N 42 A2M "C4'" C N R 43 A2M "O4'" O N N 44 A2M "C3'" C N R 45 A2M "O3'" O N N 46 A2M "C2'" C N R 47 A2M "O2'" O N N 48 A2M "C1'" C N R 49 A2M "CM'" C N N 50 A2M N9 N Y N 51 A2M C8 C Y N 52 A2M N7 N Y N 53 A2M C5 C Y N 54 A2M C6 C Y N 55 A2M N6 N N N 56 A2M N1 N Y N 57 A2M C2 C Y N 58 A2M N3 N Y N 59 A2M C4 C Y N 60 A2M HOP3 H N N 61 A2M "H5'" H N N 62 A2M "H5''" H N N 63 A2M "H4'" H N N 64 A2M "H3'" H N N 65 A2M "HO3'" H N N 66 A2M "H2'" H N N 67 A2M "H1'" H N N 68 A2M "HM'1" H N N 69 A2M "HM'2" H N N 70 A2M "HM'3" H N N 71 A2M H8 H N N 72 A2M H61 H N N 73 A2M H62 H N N 74 A2M H2 H N N 75 A2M OP2 O N N 76 A2M HOP2 H N N 77 C OP3 O N N 78 C P P N N 79 C OP1 O N N 80 C OP2 O N N 81 C "O5'" O N N 82 C "C5'" C N N 83 C "C4'" C N R 84 C "O4'" O N N 85 C "C3'" C N S 86 C "O3'" O N N 87 C "C2'" C N R 88 C "O2'" O N N 89 C "C1'" C N R 90 C N1 N N N 91 C C2 C N N 92 C O2 O N N 93 C N3 N N N 94 C C4 C N N 95 C N4 N N N 96 C C5 C N N 97 C C6 C N N 98 C HOP3 H N N 99 C HOP2 H N N 100 C "H5'" H N N 101 C "H5''" H N N 102 C "H4'" H N N 103 C "H3'" H N N 104 C "HO3'" H N N 105 C "H2'" H N N 106 C "HO2'" H N N 107 C "H1'" H N N 108 C H41 H N N 109 C H42 H N N 110 C H5 H N N 111 C H6 H N N 112 G OP3 O N N 113 G P P N N 114 G OP1 O N N 115 G OP2 O N N 116 G "O5'" O N N 117 G "C5'" C N N 118 G "C4'" C N R 119 G "O4'" O N N 120 G "C3'" C N S 121 G "O3'" O N N 122 G "C2'" C N R 123 G "O2'" O N N 124 G "C1'" C N R 125 G N9 N Y N 126 G C8 C Y N 127 G N7 N Y N 128 G C5 C Y N 129 G C6 C N N 130 G O6 O N N 131 G N1 N N N 132 G C2 C N N 133 G N2 N N N 134 G N3 N N N 135 G C4 C Y N 136 G HOP3 H N N 137 G HOP2 H N N 138 G "H5'" H N N 139 G "H5''" H N N 140 G "H4'" H N N 141 G "H3'" H N N 142 G "HO3'" H N N 143 G "H2'" H N N 144 G "HO2'" H N N 145 G "H1'" H N N 146 G H8 H N N 147 G H1 H N N 148 G H21 H N N 149 G H22 H N N 150 HOH O O N N 151 HOH H1 H N N 152 HOH H2 H N N 153 MG MG MG N N 154 S9L O3P O N N 155 S9L P P N N 156 S9L O1P O N N 157 S9L O2P O N N 158 S9L "O5'" O N N 159 S9L C12 C N N 160 S9L C22 C N N 161 S9L OH3 O N N 162 S9L C13 C N N 163 S9L C23 C N N 164 S9L OH4 O N N 165 S9L C14 C N N 166 S9L C24 C N N 167 S9L "O3'" O N N 168 S9L HO3P H N N 169 S9L HO1P H N N 170 S9L H121 H N N 171 S9L H122 H N N 172 S9L H221 H N N 173 S9L H222 H N N 174 S9L H131 H N N 175 S9L H132 H N N 176 S9L H231 H N N 177 S9L H232 H N N 178 S9L H141 H N N 179 S9L H142 H N N 180 S9L H241 H N N 181 S9L H242 H N N 182 S9L "HO3'" H N N 183 SO4 S S N N 184 SO4 O1 O N N 185 SO4 O2 O N N 186 SO4 O3 O N N 187 SO4 O4 O N N 188 U OP3 O N N 189 U P P N N 190 U OP1 O N N 191 U OP2 O N N 192 U "O5'" O N N 193 U "C5'" C N N 194 U "C4'" C N R 195 U "O4'" O N N 196 U "C3'" C N S 197 U "O3'" O N N 198 U "C2'" C N R 199 U "O2'" O N N 200 U "C1'" C N R 201 U N1 N N N 202 U C2 C N N 203 U O2 O N N 204 U N3 N N N 205 U C4 C N N 206 U O4 O N N 207 U C5 C N N 208 U C6 C N N 209 U HOP3 H N N 210 U HOP2 H N N 211 U "H5'" H N N 212 U "H5''" H N N 213 U "H4'" H N N 214 U "H3'" H N N 215 U "HO3'" H N N 216 U "H2'" H N N 217 U "HO2'" H N N 218 U "H1'" H N N 219 U H3 H N N 220 U H5 H N N 221 U H6 H N N 222 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A2M P OP1 doub N N 40 A2M P OP3 sing N N 41 A2M P "O5'" sing N N 42 A2M OP3 HOP3 sing N N 43 A2M "O5'" "C5'" sing N N 44 A2M "C5'" "C4'" sing N N 45 A2M "C5'" "H5'" sing N N 46 A2M "C5'" "H5''" sing N N 47 A2M "C4'" "O4'" sing N N 48 A2M "C4'" "C3'" sing N N 49 A2M "C4'" "H4'" sing N N 50 A2M "O4'" "C1'" sing N N 51 A2M "C3'" "O3'" sing N N 52 A2M "C3'" "C2'" sing N N 53 A2M "C3'" "H3'" sing N N 54 A2M "O3'" "HO3'" sing N N 55 A2M "C2'" "O2'" sing N N 56 A2M "C2'" "C1'" sing N N 57 A2M "C2'" "H2'" sing N N 58 A2M "O2'" "CM'" sing N N 59 A2M "C1'" N9 sing N N 60 A2M "C1'" "H1'" sing N N 61 A2M "CM'" "HM'1" sing N N 62 A2M "CM'" "HM'2" sing N N 63 A2M "CM'" "HM'3" sing N N 64 A2M N9 C8 sing Y N 65 A2M N9 C4 sing Y N 66 A2M C8 N7 doub Y N 67 A2M C8 H8 sing N N 68 A2M N7 C5 sing Y N 69 A2M C5 C6 sing Y N 70 A2M C5 C4 doub Y N 71 A2M C6 N6 sing N N 72 A2M C6 N1 doub Y N 73 A2M N6 H61 sing N N 74 A2M N6 H62 sing N N 75 A2M N1 C2 sing Y N 76 A2M C2 N3 doub Y N 77 A2M C2 H2 sing N N 78 A2M N3 C4 sing Y N 79 A2M P OP2 sing N N 80 A2M OP2 HOP2 sing N N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 S9L O3P P sing N N 160 S9L O3P HO3P sing N N 161 S9L P O2P doub N N 162 S9L P O1P sing N N 163 S9L P "O5'" sing N N 164 S9L O1P HO1P sing N N 165 S9L "O5'" C12 sing N N 166 S9L C12 C22 sing N N 167 S9L C12 H121 sing N N 168 S9L C12 H122 sing N N 169 S9L C22 OH3 sing N N 170 S9L C22 H221 sing N N 171 S9L C22 H222 sing N N 172 S9L OH3 C23 sing N N 173 S9L C13 C23 sing N N 174 S9L C13 OH4 sing N N 175 S9L C13 H131 sing N N 176 S9L C13 H132 sing N N 177 S9L C23 H231 sing N N 178 S9L C23 H232 sing N N 179 S9L OH4 C24 sing N N 180 S9L C14 C24 sing N N 181 S9L C14 "O3'" sing N N 182 S9L C14 H141 sing N N 183 S9L C14 H142 sing N N 184 S9L C24 H241 sing N N 185 S9L C24 H242 sing N N 186 S9L "O3'" "HO3'" sing N N 187 SO4 S O1 doub N N 188 SO4 S O2 doub N N 189 SO4 S O3 sing N N 190 SO4 S O4 sing N N 191 U OP3 P sing N N 192 U OP3 HOP3 sing N N 193 U P OP1 doub N N 194 U P OP2 sing N N 195 U P "O5'" sing N N 196 U OP2 HOP2 sing N N 197 U "O5'" "C5'" sing N N 198 U "C5'" "C4'" sing N N 199 U "C5'" "H5'" sing N N 200 U "C5'" "H5''" sing N N 201 U "C4'" "O4'" sing N N 202 U "C4'" "C3'" sing N N 203 U "C4'" "H4'" sing N N 204 U "O4'" "C1'" sing N N 205 U "C3'" "O3'" sing N N 206 U "C3'" "C2'" sing N N 207 U "C3'" "H3'" sing N N 208 U "O3'" "HO3'" sing N N 209 U "C2'" "O2'" sing N N 210 U "C2'" "C1'" sing N N 211 U "C2'" "H2'" sing N N 212 U "O2'" "HO2'" sing N N 213 U "C1'" N1 sing N N 214 U "C1'" "H1'" sing N N 215 U N1 C2 sing N N 216 U N1 C6 sing N N 217 U C2 O2 doub N N 218 U C2 N3 sing N N 219 U N3 C4 sing N N 220 U N3 H3 sing N N 221 U C4 O4 doub N N 222 U C4 C5 sing N N 223 U C5 C6 doub N N 224 U C5 H5 sing N N 225 U C6 H6 sing N N 226 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3CR1 'double helix' 3CR1 'a-form double helix' 3CR1 'bulge loop' 3CR1 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 B G 12 1_555 0.104 -0.157 -0.344 8.358 -18.239 1.976 1 A_C2:G13_B A 2 ? B 13 ? 19 1 1 A C 3 1_555 B G 11 1_555 0.151 -0.155 -0.061 -4.133 -7.298 1.693 2 A_C3:G12_B A 3 ? B 12 ? 19 1 1 A C 4 1_555 B G 10 1_555 0.434 -0.145 -0.017 4.103 2.990 3.214 3 A_C4:G11_B A 4 ? B 11 ? 19 1 1 A A2M 5 1_555 B A 8 1_555 6.766 -3.722 -0.868 9.993 -3.298 -31.264 4 A_A2M5:A9_B A 5 ? B 9 ? ? ? 1 A U 7 1_555 B G 7 1_555 -8.010 -2.937 0.109 8.590 9.307 -3.769 5 A_U7:G8_B A 7 ? B 8 ? ? ? 1 A C 8 1_555 B A 6 1_555 -1.976 0.466 -1.176 24.474 -16.251 8.701 6 A_C8:A7_B A 8 ? B 7 ? ? ? 1 A C 9 1_555 B G 5 1_555 -0.133 -0.062 -0.252 10.219 -13.424 5.079 7 A_C9:G6_B A 9 ? B 6 ? 19 1 1 A A 10 1_555 B U 4 1_555 0.826 -0.121 0.552 3.328 -12.360 1.154 8 A_A10:U5_B A 10 ? B 5 ? 20 1 1 A C 11 1_555 B G 3 1_555 0.462 -0.055 0.329 3.632 -13.511 3.391 9 A_C11:G4_B A 11 ? B 4 ? 19 1 1 A C 12 1_555 B G 2 1_555 0.108 -0.332 0.364 0.688 -13.716 3.599 10 A_C12:G3_B A 12 ? B 3 ? 19 1 1 A G 13 1_555 B C 1 1_555 -0.152 0.009 0.071 -1.454 -9.966 5.749 11 A_G13:C2_B A 13 ? B 2 ? 19 1 1 B G 14 1_555 C C 19 1_555 -0.314 -0.142 0.320 -0.998 -10.755 0.458 12 B_G15:C49_C B 15 ? C 49 ? 19 1 1 B G 15 1_555 C C 18 1_555 -0.141 -0.237 0.350 8.786 -13.183 -1.212 13 B_G16:C48_C B 16 ? C 48 ? 19 1 1 B C 16 1_555 C G 17 1_555 0.027 -0.142 0.023 6.041 -11.349 -0.722 14 B_C17:G47_C B 17 ? C 47 ? 19 1 1 B A 17 1_555 C U 16 1_555 -0.264 -0.007 -0.251 -6.933 -13.730 7.446 15 B_A18:U46_C B 18 ? C 46 ? 20 1 1 B G 18 1_555 C C 15 1_555 -0.373 -0.152 -0.422 -10.722 -10.410 7.566 16 B_G19:C45_C B 19 ? C 45 ? 19 1 1 B A 19 1_555 C C 14 1_555 2.257 0.165 -0.648 -13.591 -6.518 10.763 17 B_A20:C44_C B 20 ? C 44 ? ? 1 1 B G 20 1_555 C A 13 1_555 6.973 -4.471 -0.176 -4.596 0.744 -7.697 18 B_G21:A43_C B 21 ? C 43 ? 11 10 1 B A 21 1_555 C U 11 1_555 -4.012 -1.797 -0.227 -7.942 -11.475 -101.647 19 B_A22:U41_C B 22 ? C 41 ? 24 4 1 B A 22 1_555 C A 10 1_555 -4.204 0.951 -0.768 -3.111 -23.382 -96.176 20 B_A23:A40_C B 23 ? C 40 ? 5 4 1 B A 23 1_555 C C 8 1_555 -1.318 0.093 0.225 8.675 11.403 122.052 21 B_A24:C38_C B 24 ? C 38 ? ? 2 1 B C 24 1_555 A G 6 1_555 0.179 -0.114 -0.157 18.830 -11.294 2.446 22 B_C25:G6_A B 25 ? A 6 ? 19 1 1 B A 25 1_555 C G 6 1_555 0.305 1.319 -0.431 -9.779 -21.051 -19.308 23 B_A26:G36_C B 26 ? C 36 ? 8 ? 1 B C 26 1_555 C G 5 1_555 0.075 -0.178 0.023 6.705 -22.876 2.181 24 B_C27:G35_C B 27 ? C 35 ? 19 1 1 B A 27 1_555 C U 4 1_555 0.108 -0.226 0.178 2.006 -22.307 -0.420 25 B_A28:U34_C B 28 ? C 34 ? 20 1 1 B C 28 1_555 C G 3 1_555 0.030 -0.105 -0.066 8.110 -14.528 2.518 26 B_C29:G33_C B 29 ? C 33 ? 19 1 1 B G 29 1_555 C C 2 1_555 -0.363 -0.102 -0.053 -10.991 -16.737 -0.646 27 B_G30:C32_C B 30 ? C 32 ? 19 1 1 B A 30 1_555 C U 1 1_555 0.405 -0.072 -0.007 -3.465 -11.953 0.792 28 B_A31:U31_C B 31 ? C 31 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 B G 12 1_555 A C 3 1_555 B G 11 1_555 -0.542 -1.815 3.573 -2.167 12.753 32.438 -4.965 0.577 2.718 21.779 3.700 34.858 1 AA_C2C3:G12G13_BB A 2 ? B 13 ? A 3 ? B 12 ? 1 A C 3 1_555 B G 11 1_555 A C 4 1_555 B G 10 1_555 0.296 -1.470 3.233 1.127 7.945 28.306 -4.482 -0.358 2.738 15.847 -2.247 29.399 2 AA_C3C4:G11G12_BB A 3 ? B 12 ? A 4 ? B 11 ? 1 A C 4 1_555 B G 10 1_555 A A2M 5 1_555 B A 8 1_555 -0.119 -0.923 5.399 -0.721 23.114 78.129 -1.687 0.061 5.022 17.977 0.561 80.951 3 AA_C4A2M5:A9G11_BB A 4 ? B 11 ? A 5 ? B 9 ? 1 A A2M 5 1_555 B A 8 1_555 A U 7 1_555 B G 7 1_555 -0.038 -0.051 3.437 10.143 3.561 2.011 -6.063 16.713 0.582 26.312 -74.949 10.936 4 AA_A2M5U7:G8A9_BB A 5 ? B 9 ? A 7 ? B 8 ? 1 A U 7 1_555 B G 7 1_555 A C 8 1_555 B A 6 1_555 0.153 -0.599 2.924 0.107 11.821 53.204 -1.286 -0.162 2.744 13.017 -0.118 54.408 5 AA_U7C8:A7G8_BB A 7 ? B 8 ? A 8 ? B 7 ? 1 A C 8 1_555 B A 6 1_555 A C 9 1_555 B G 5 1_555 -0.048 -1.328 3.872 -5.972 8.915 37.987 -3.173 -0.735 3.454 13.373 8.957 39.420 6 AA_C8C9:G6A7_BB A 8 ? B 7 ? A 9 ? B 6 ? 1 A C 9 1_555 B G 5 1_555 A A 10 1_555 B U 4 1_555 -0.299 -1.707 3.260 -5.331 9.951 36.972 -3.735 -0.165 2.743 15.261 8.175 38.599 7 AA_C9A10:U5G6_BB A 9 ? B 6 ? A 10 ? B 5 ? 1 A A 10 1_555 B U 4 1_555 A C 11 1_555 B G 3 1_555 -0.115 -1.417 3.209 2.171 4.054 28.724 -3.667 0.681 2.968 8.107 -4.340 29.083 8 AA_A10C11:G4U5_BB A 10 ? B 5 ? A 11 ? B 4 ? 1 A C 11 1_555 B G 3 1_555 A C 12 1_555 B G 2 1_555 0.085 -2.197 3.132 0.249 7.216 29.764 -5.417 -0.118 2.542 13.794 -0.477 30.608 9 AA_C11C12:G3G4_BB A 11 ? B 4 ? A 12 ? B 3 ? 1 A C 12 1_555 B G 2 1_555 A G 13 1_555 B C 1 1_555 0.126 -1.748 3.073 3.164 9.066 31.680 -4.404 0.243 2.492 16.149 -5.635 33.067 10 AA_C12G13:C2G3_BB A 12 ? B 3 ? A 13 ? B 2 ? 1 B G 14 1_555 C C 19 1_555 B G 15 1_555 C C 18 1_555 -0.758 -1.074 2.985 -2.854 6.741 33.775 -2.739 0.883 2.778 11.437 4.842 34.537 11 BB_G15G16:C48C49_CC B 15 ? C 49 ? B 16 ? C 48 ? 1 B G 15 1_555 C C 18 1_555 B C 16 1_555 C G 17 1_555 0.363 -1.402 3.284 0.949 9.148 34.733 -3.524 -0.460 2.845 15.000 -1.556 35.894 12 BB_G16C17:G47C48_CC B 16 ? C 48 ? B 17 ? C 47 ? 1 B C 16 1_555 C G 17 1_555 B A 17 1_555 C U 16 1_555 0.583 -1.611 3.491 2.063 12.244 31.266 -4.765 -0.676 2.719 21.678 -3.653 33.584 13 BB_C17A18:U46G47_CC B 17 ? C 47 ? B 18 ? C 46 ? 1 B A 17 1_555 C U 16 1_555 B G 18 1_555 C C 15 1_555 0.213 -1.877 3.410 0.071 8.531 28.781 -5.319 -0.397 2.753 16.705 -0.140 29.994 14 BB_A18G19:C45U46_CC B 18 ? C 46 ? B 19 ? C 45 ? 1 B G 18 1_555 C C 15 1_555 B A 19 1_555 C C 14 1_555 0.580 -1.429 3.516 3.058 6.047 37.225 -3.021 -0.482 3.288 9.378 -4.742 37.815 15 BB_G19A20:C44C45_CC B 19 ? C 45 ? B 20 ? C 44 ? 1 B A 19 1_555 C C 14 1_555 B G 20 1_555 C A 13 1_555 -0.347 -1.129 3.086 4.201 6.436 57.455 -1.482 0.565 2.925 6.662 -4.348 57.923 16 BB_A20G21:A43C44_CC B 20 ? C 44 ? B 21 ? C 43 ? 1 B G 20 1_555 C A 13 1_555 B A 21 1_555 C U 11 1_555 -2.206 -0.652 3.522 2.756 -0.441 15.946 -1.993 9.841 3.115 -1.575 -9.835 16.187 17 BB_G21A22:U41A43_CC B 21 ? C 43 ? B 22 ? C 41 ? 1 B A 21 1_555 C U 11 1_555 B A 22 1_555 C A 10 1_555 0.036 -2.415 3.541 -9.851 7.877 44.788 -3.744 -0.897 3.025 10.103 12.634 46.442 18 BB_A22A23:A40U41_CC B 22 ? C 41 ? B 23 ? C 40 ? 1 B A 22 1_555 C A 10 1_555 B A 23 1_555 C C 8 1_555 -0.168 -2.931 2.920 1.258 -10.433 -68.334 2.906 -0.110 2.507 9.233 1.113 -69.040 19 BB_A23A24:C38A40_CC B 23 ? C 40 ? B 24 ? C 38 ? 1 B C 24 1_555 A G 6 1_555 B A 25 1_555 C G 6 1_555 0.168 -1.874 3.863 3.765 9.309 48.732 -3.005 0.113 3.475 11.144 -4.507 49.694 20 BB_C25A26:G36G6_CA B 25 ? A 6 ? B 26 ? C 36 ? 1 B A 25 1_555 C G 6 1_555 B C 26 1_555 C G 5 1_555 1.202 -0.561 2.928 -3.650 1.847 29.118 -1.449 -3.047 2.720 3.651 7.215 29.398 21 BB_A26C27:G35G36_CC B 26 ? C 36 ? B 27 ? C 35 ? 1 B C 26 1_555 C G 5 1_555 B A 27 1_555 C U 4 1_555 -0.036 -1.172 3.267 -1.184 12.393 35.183 -3.385 -0.092 2.715 19.754 1.888 37.255 22 BB_C27A28:U34G35_CC B 27 ? C 35 ? B 28 ? C 34 ? 1 B A 27 1_555 C U 4 1_555 B C 28 1_555 C G 3 1_555 0.525 -0.992 3.146 2.643 -1.371 31.740 -1.562 -0.487 3.217 -2.500 -4.820 31.876 23 BB_A28C29:G33U34_CC B 28 ? C 34 ? B 29 ? C 33 ? 1 B C 28 1_555 C G 3 1_555 B G 29 1_555 C C 2 1_555 0.175 -1.429 3.618 2.272 14.226 35.402 -4.042 0.028 2.862 22.288 -3.560 38.133 24 BB_C29G30:C32G33_CC B 29 ? C 33 ? B 30 ? C 32 ? 1 B G 29 1_555 C C 2 1_555 B A 30 1_555 C U 1 1_555 0.725 -1.544 3.027 3.033 4.784 33.835 -3.297 -0.800 2.841 8.149 -5.167 34.292 25 BB_G30A31:U31C32_CC B 30 ? C 32 ? B 31 ? C 31 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 'MAGNESIUM ION' MG 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2OUE _pdbx_initial_refinement_model.details ? #