HEADER OXIDOREDUCTASE 09-APR-08 3CSE TITLE CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE COMPLEXED WITH NADPH AND 2,4- TITLE 2 DIAMINO-5-(3-(2,5-DIMETHOXYPHENYL)PROP-1-YNYL)-6-ETHYLPYRIMIDINE TITLE 3 (UCP120B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5478; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41 KEYWDS PROTEIN-LIGAND COMPLEX, REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,A.C.ANDERSON REVDAT 5 21-FEB-24 3CSE 1 REMARK SEQADV REVDAT 4 25-OCT-17 3CSE 1 REMARK REVDAT 3 27-NOV-13 3CSE 1 FORMUL HET HETATM HETNAM REVDAT 3 2 1 HETSYN VERSN REVDAT 2 24-FEB-09 3CSE 1 VERSN REVDAT 1 25-NOV-08 3CSE 0 JRNL AUTH J.LIU,D.B.BOLSTAD,A.E.SMITH,N.D.PRIESTLEY,D.L.WRIGHT, JRNL AUTH 2 A.C.ANDERSON JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF EFFICACIOUS ANTIFUNGAL JRNL TITL 2 AGENTS TARGETING CANDIDA GLABRATA DIHYDROFOLATE REDUCTASE. JRNL REF CHEM.BIOL. V. 15 990 2008 JRNL REFN ISSN 1074-5521 JRNL PMID 18804036 JRNL DOI 10.1016/J.CHEMBIOL.2008.07.013 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 47676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2558 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 142 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3934 ; 0.035 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5336 ; 2.965 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ;35.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;35.306 ;24.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;14.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.251 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2940 ; 0.018 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1833 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2605 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 373 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 126 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.311 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 2.052 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3646 ; 2.795 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 4.124 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1690 ; 5.672 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CSE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50325 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 0.2 M MGCL2, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.20200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.60100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.80300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 219 O HOH A 542 1.80 REMARK 500 OD2 ASP A 132 OD2 ASP B 132 1.83 REMARK 500 OE1 GLU B 184 O HOH B 560 1.83 REMARK 500 CG GLN A 190 O HOH A 529 2.04 REMARK 500 O HOH B 410 O HOH B 442 2.05 REMARK 500 OE2 GLU B 84 O HOH B 523 2.06 REMARK 500 NH1 ARG A 165 O HOH A 583 2.07 REMARK 500 O HOH B 480 O HOH B 577 2.08 REMARK 500 O HOH A 414 O HOH A 458 2.12 REMARK 500 O HOH A 501 O HOH A 562 2.16 REMARK 500 NZ LYS B 114 O HOH B 520 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 71 O HOH A 490 1565 1.87 REMARK 500 OE1 GLU B 219 O HOH A 527 1655 1.95 REMARK 500 O HOH B 476 O HOH B 527 1545 2.03 REMARK 500 O HOH A 460 O HOH A 478 1655 2.10 REMARK 500 NZ LYS B 87 O HOH A 542 1565 2.16 REMARK 500 O HOH A 478 O HOH A 495 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 89 CD GLU A 89 OE2 0.081 REMARK 500 TYR A 127 CD1 TYR A 127 CE1 0.104 REMARK 500 ARG A 128 CZ ARG A 128 NH2 0.085 REMARK 500 GLU A 195 CG GLU A 195 CD 0.095 REMARK 500 TYR A 207 CG TYR A 207 CD1 0.086 REMARK 500 GLU A 219 CD GLU A 219 OE1 0.068 REMARK 500 GLU B 89 CG GLU B 89 CD 0.101 REMARK 500 GLU B 89 CD GLU B 89 OE1 0.072 REMARK 500 GLY B 91 N GLY B 91 CA 0.090 REMARK 500 TYR B 127 CD1 TYR B 127 CE1 0.091 REMARK 500 GLY B 185 N GLY B 185 CA 0.098 REMARK 500 GLU B 191 CG GLU B 191 CD 0.092 REMARK 500 GLU B 191 CD GLU B 191 OE1 0.090 REMARK 500 GLN B 208 CG GLN B 208 CD 0.151 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 35 CB - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 37 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 LYS A 65 CD - CE - NZ ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 CYS A 101 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 LEU A 196 CB - CG - CD2 ANGL. DEV. = 15.6 DEGREES REMARK 500 LYS A 216 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 MET B 33 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 99 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 CYS B 101 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 CYS B 101 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 132 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 132 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 LEU B 145 CB - CG - CD1 ANGL. DEV. = 12.4 DEGREES REMARK 500 GLY B 194 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 85 98.67 -171.19 REMARK 500 ASP A 154 -1.05 -142.03 REMARK 500 LYS A 205 -133.10 53.91 REMARK 500 LEU B 85 101.96 -169.81 REMARK 500 LEU B 187 117.10 -35.21 REMARK 500 ASN B 193 51.00 38.17 REMARK 500 LYS B 205 -130.60 50.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 83 GLU A 84 -135.81 REMARK 500 PHE B 81 ASP B 82 -136.72 REMARK 500 GLY B 83 GLU B 84 -137.20 REMARK 500 GLY B 185 ARG B 186 120.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N22 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N22 B 302 DBREF 3CSE A 1 217 UNP Q6FPH0 Q6FPH0_CANGA 1 217 DBREF 3CSE B 1 217 UNP Q6FPH0 Q6FPH0_CANGA 1 217 SEQADV 3CSE LEU A 218 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE GLU A 219 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 220 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 221 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 222 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 223 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 224 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 225 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 226 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS A 227 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE LEU B 218 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE GLU B 219 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 220 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 221 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 222 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 223 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 224 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 225 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 226 UNP Q6FPH0 EXPRESSION TAG SEQADV 3CSE HIS B 227 UNP Q6FPH0 EXPRESSION TAG SEQRES 1 A 227 MET SER LYS VAL PRO VAL VAL GLY ILE VAL ALA ALA LEU SEQRES 2 A 227 LEU PRO GLU MET GLY ILE GLY PHE GLN GLY ASN LEU PRO SEQRES 3 A 227 TRP ARG LEU ALA LYS GLU MET LYS TYR PHE ARG GLU VAL SEQRES 4 A 227 THR THR LEU THR ASN ASP ASN SER LYS GLN ASN VAL VAL SEQRES 5 A 227 ILE MET GLY ARG LYS THR TRP GLU SER ILE PRO GLN LYS SEQRES 6 A 227 PHE ARG PRO LEU PRO LYS ARG ILE ASN VAL VAL VAL SER SEQRES 7 A 227 ARG SER PHE ASP GLY GLU LEU ARG LYS VAL GLU ASP GLY SEQRES 8 A 227 ILE TYR HIS SER ASN SER LEU ARG ASN CYS LEU THR ALA SEQRES 9 A 227 LEU GLN SER SER LEU ALA ASN GLU ASN LYS ILE GLU ARG SEQRES 10 A 227 ILE TYR ILE ILE GLY GLY GLY GLU ILE TYR ARG GLN SER SEQRES 11 A 227 MET ASP LEU ALA ASP HIS TRP LEU ILE THR LYS ILE MET SEQRES 12 A 227 PRO LEU PRO GLU THR THR ILE PRO GLN MET ASP THR PHE SEQRES 13 A 227 LEU GLN LYS GLN GLU LEU GLU GLN ARG PHE TYR ASP ASN SEQRES 14 A 227 SER ASP LYS LEU VAL ASP PHE LEU PRO SER SER ILE GLN SEQRES 15 A 227 LEU GLU GLY ARG LEU THR SER GLN GLU TRP ASN GLY GLU SEQRES 16 A 227 LEU VAL LYS GLY LEU PRO VAL GLN GLU LYS GLY TYR GLN SEQRES 17 A 227 PHE TYR PHE THR LEU TYR THR LYS LYS LEU GLU HIS HIS SEQRES 18 A 227 HIS HIS HIS HIS HIS HIS SEQRES 1 B 227 MET SER LYS VAL PRO VAL VAL GLY ILE VAL ALA ALA LEU SEQRES 2 B 227 LEU PRO GLU MET GLY ILE GLY PHE GLN GLY ASN LEU PRO SEQRES 3 B 227 TRP ARG LEU ALA LYS GLU MET LYS TYR PHE ARG GLU VAL SEQRES 4 B 227 THR THR LEU THR ASN ASP ASN SER LYS GLN ASN VAL VAL SEQRES 5 B 227 ILE MET GLY ARG LYS THR TRP GLU SER ILE PRO GLN LYS SEQRES 6 B 227 PHE ARG PRO LEU PRO LYS ARG ILE ASN VAL VAL VAL SER SEQRES 7 B 227 ARG SER PHE ASP GLY GLU LEU ARG LYS VAL GLU ASP GLY SEQRES 8 B 227 ILE TYR HIS SER ASN SER LEU ARG ASN CYS LEU THR ALA SEQRES 9 B 227 LEU GLN SER SER LEU ALA ASN GLU ASN LYS ILE GLU ARG SEQRES 10 B 227 ILE TYR ILE ILE GLY GLY GLY GLU ILE TYR ARG GLN SER SEQRES 11 B 227 MET ASP LEU ALA ASP HIS TRP LEU ILE THR LYS ILE MET SEQRES 12 B 227 PRO LEU PRO GLU THR THR ILE PRO GLN MET ASP THR PHE SEQRES 13 B 227 LEU GLN LYS GLN GLU LEU GLU GLN ARG PHE TYR ASP ASN SEQRES 14 B 227 SER ASP LYS LEU VAL ASP PHE LEU PRO SER SER ILE GLN SEQRES 15 B 227 LEU GLU GLY ARG LEU THR SER GLN GLU TRP ASN GLY GLU SEQRES 16 B 227 LEU VAL LYS GLY LEU PRO VAL GLN GLU LYS GLY TYR GLN SEQRES 17 B 227 PHE TYR PHE THR LEU TYR THR LYS LYS LEU GLU HIS HIS SEQRES 18 B 227 HIS HIS HIS HIS HIS HIS HET NDP A 301 48 HET N22 A 302 23 HET NDP B 301 48 HET N22 B 302 23 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM N22 5-[3-(2,5-DIMETHOXYPHENYL)PROP-1-YN-1-YL]-6- HETNAM 2 N22 ETHYLPYRIMIDINE-2,4-DIAMINE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 N22 2(C17 H20 N4 O2) FORMUL 7 HOH *388(H2 O) HELIX 1 1 LEU A 29 LEU A 42 1 14 HELIX 2 2 ARG A 56 ILE A 62 1 7 HELIX 3 3 PRO A 63 ARG A 67 5 5 HELIX 4 4 SER A 97 GLN A 106 1 10 HELIX 5 5 SER A 107 GLU A 112 1 6 HELIX 6 6 GLY A 123 MET A 131 1 9 HELIX 7 7 GLN A 158 ARG A 165 1 8 HELIX 8 8 LYS A 172 LEU A 177 1 6 HELIX 9 9 LEU B 29 LEU B 42 1 14 HELIX 10 10 ARG B 56 ILE B 62 1 7 HELIX 11 11 PRO B 63 ARG B 67 5 5 HELIX 12 12 SER B 97 GLN B 106 1 10 HELIX 13 13 SER B 107 GLU B 112 1 6 HELIX 14 14 GLY B 123 MET B 131 1 9 HELIX 15 15 GLN B 158 ARG B 165 1 8 HELIX 16 16 LYS B 172 LEU B 177 1 6 SHEET 1 A 9 ARG A 86 GLU A 89 0 SHEET 2 A 9 ILE A 92 SER A 95 -1 O HIS A 94 N ARG A 86 SHEET 3 A 9 ILE A 73 VAL A 77 1 N ASN A 74 O TYR A 93 SHEET 4 A 9 GLN A 49 GLY A 55 1 N VAL A 52 O ILE A 73 SHEET 5 A 9 ILE A 115 ILE A 120 1 O TYR A 119 N VAL A 51 SHEET 6 A 9 VAL A 6 LEU A 13 1 N VAL A 7 O ILE A 118 SHEET 7 A 9 HIS A 136 PRO A 144 1 O LEU A 138 N GLY A 8 SHEET 8 A 9 TYR A 207 LYS A 216 -1 O TYR A 214 N TRP A 137 SHEET 9 A 9 PHE A 166 ASP A 168 -1 N TYR A 167 O THR A 215 SHEET 1 B10 ARG A 86 GLU A 89 0 SHEET 2 B10 ILE A 92 SER A 95 -1 O HIS A 94 N ARG A 86 SHEET 3 B10 ILE A 73 VAL A 77 1 N ASN A 74 O TYR A 93 SHEET 4 B10 GLN A 49 GLY A 55 1 N VAL A 52 O ILE A 73 SHEET 5 B10 ILE A 115 ILE A 120 1 O TYR A 119 N VAL A 51 SHEET 6 B10 VAL A 6 LEU A 13 1 N VAL A 7 O ILE A 118 SHEET 7 B10 HIS A 136 PRO A 144 1 O LEU A 138 N GLY A 8 SHEET 8 B10 TYR A 207 LYS A 216 -1 O TYR A 214 N TRP A 137 SHEET 9 B10 GLU A 195 GLU A 204 -1 N VAL A 202 O PHE A 209 SHEET 10 B10 THR A 188 TRP A 192 -1 N GLN A 190 O VAL A 197 SHEET 1 C 2 GLY A 18 GLY A 20 0 SHEET 2 C 2 THR A 155 PHE A 156 -1 O THR A 155 N ILE A 19 SHEET 1 D 9 ARG B 86 GLU B 89 0 SHEET 2 D 9 ILE B 92 SER B 95 -1 O HIS B 94 N ARG B 86 SHEET 3 D 9 ILE B 73 VAL B 77 1 N ASN B 74 O TYR B 93 SHEET 4 D 9 GLN B 49 GLY B 55 1 N VAL B 52 O ILE B 73 SHEET 5 D 9 ILE B 115 GLY B 122 1 O TYR B 119 N VAL B 51 SHEET 6 D 9 VAL B 6 LEU B 13 1 N VAL B 7 O ILE B 118 SHEET 7 D 9 HIS B 136 PRO B 144 1 O LEU B 138 N GLY B 8 SHEET 8 D 9 TYR B 207 LYS B 216 -1 O TYR B 214 N TRP B 137 SHEET 9 D 9 PHE B 166 ASP B 168 -1 N TYR B 167 O THR B 215 SHEET 1 E10 ARG B 86 GLU B 89 0 SHEET 2 E10 ILE B 92 SER B 95 -1 O HIS B 94 N ARG B 86 SHEET 3 E10 ILE B 73 VAL B 77 1 N ASN B 74 O TYR B 93 SHEET 4 E10 GLN B 49 GLY B 55 1 N VAL B 52 O ILE B 73 SHEET 5 E10 ILE B 115 GLY B 122 1 O TYR B 119 N VAL B 51 SHEET 6 E10 VAL B 6 LEU B 13 1 N VAL B 7 O ILE B 118 SHEET 7 E10 HIS B 136 PRO B 144 1 O LEU B 138 N GLY B 8 SHEET 8 E10 TYR B 207 LYS B 216 -1 O TYR B 214 N TRP B 137 SHEET 9 E10 GLU B 195 GLU B 204 -1 N VAL B 202 O PHE B 209 SHEET 10 E10 THR B 188 TRP B 192 -1 N GLN B 190 O VAL B 197 SHEET 1 F 2 GLY B 18 GLY B 20 0 SHEET 2 F 2 THR B 155 PHE B 156 -1 O THR B 155 N ILE B 19 CISPEP 1 LEU A 14 PRO A 15 0 2.11 CISPEP 2 ARG A 67 PRO A 68 0 -2.14 CISPEP 3 GLY A 122 GLY A 123 0 8.35 CISPEP 4 LEU B 14 PRO B 15 0 -0.16 CISPEP 5 ARG B 67 PRO B 68 0 -1.06 CISPEP 6 GLY B 122 GLY B 123 0 1.35 CISPEP 7 ASN B 193 GLY B 194 0 -15.26 SITE 1 AC1 32 VAL A 10 ALA A 11 ILE A 19 GLY A 20 SITE 2 AC1 32 GLY A 23 ASN A 24 LEU A 25 GLY A 55 SITE 3 AC1 32 ARG A 56 LYS A 57 THR A 58 VAL A 77 SITE 4 AC1 32 SER A 78 ARG A 79 ASN A 96 SER A 97 SITE 5 AC1 32 LEU A 98 ILE A 121 GLY A 123 GLY A 124 SITE 6 AC1 32 GLU A 125 ILE A 126 TYR A 127 GLN A 129 SITE 7 AC1 32 N22 A 302 HOH A 419 HOH A 433 HOH A 444 SITE 8 AC1 32 HOH A 447 HOH A 511 HOH A 519 HOH A 556 SITE 1 AC2 15 ILE A 9 VAL A 10 ALA A 11 LEU A 25 SITE 2 AC2 15 GLU A 32 MET A 33 PHE A 36 SER A 61 SITE 3 AC2 15 ILE A 62 ILE A 121 TYR A 127 THR A 140 SITE 4 AC2 15 NDP A 301 HOH A 433 HOH A 545 SITE 1 AC3 33 VAL B 10 ALA B 11 ILE B 19 GLY B 20 SITE 2 AC3 33 GLY B 23 ASN B 24 LEU B 25 GLY B 55 SITE 3 AC3 33 ARG B 56 LYS B 57 THR B 58 VAL B 77 SITE 4 AC3 33 SER B 78 ARG B 79 ASN B 96 SER B 97 SITE 5 AC3 33 LEU B 98 ILE B 121 GLY B 123 GLY B 124 SITE 6 AC3 33 GLU B 125 ILE B 126 TYR B 127 GLN B 129 SITE 7 AC3 33 N22 B 302 HOH B 426 HOH B 460 HOH B 463 SITE 8 AC3 33 HOH B 490 HOH B 494 HOH B 507 HOH B 583 SITE 9 AC3 33 HOH B 589 SITE 1 AC4 15 ILE B 9 VAL B 10 ALA B 11 LEU B 25 SITE 2 AC4 15 GLU B 32 MET B 33 PHE B 36 SER B 61 SITE 3 AC4 15 LEU B 69 ILE B 121 TYR B 127 THR B 140 SITE 4 AC4 15 NDP B 301 HOH B 463 HOH B 543 CRYST1 42.690 42.690 230.404 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004340 0.00000