HEADER PROTEIN BINDING 12-MAY-08 3D3J TITLE CRYSTAL STRUCTURE OF HUMAN EDC3P COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENHANCER OF MRNA-DECAPPING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL RESIDUES, UNP 203-508; COMPND 5 SYNONYM: YJEF DOMAIN-CONTAINING PROTEIN 1, LSM16 HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EDC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS HEDC3, PHOSPHOPROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.H.M.LING REVDAT 5 01-NOV-23 3D3J 1 REMARK REVDAT 4 13-JUL-11 3D3J 1 VERSN REVDAT 3 24-FEB-09 3D3J 1 VERSN REVDAT 2 07-OCT-08 3D3J 1 JRNL REVDAT 1 26-AUG-08 3D3J 0 JRNL AUTH S.H.M.LING,C.J.DECKER,M.A.WALSH,M.SHE,R.PARKER,H.SONG JRNL TITL CRYSTAL STRUCTURE OF HUMAN EDC3 AND ITS FUNCTIONAL JRNL TITL 2 IMPLICATIONS JRNL REF MOL.CELL.BIOL. V. 28 5965 2008 JRNL REFN ISSN 0270-7306 JRNL PMID 18678652 JRNL DOI 10.1128/MCB.00761-08 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.94000 REMARK 3 B22 (A**2) : 3.94000 REMARK 3 B33 (A**2) : -7.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.887 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.388 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.426 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1833 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2492 ; 0.978 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 4.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;35.375 ;24.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 309 ;16.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ; 8.721 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1361 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 849 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1229 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 62 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 0.210 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1872 ; 0.396 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 725 ; 0.472 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 620 ; 0.792 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5418 -40.6056 9.4753 REMARK 3 T TENSOR REMARK 3 T11: -0.2128 T22: 0.2172 REMARK 3 T33: -0.2050 T12: -0.2717 REMARK 3 T13: -0.0524 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 7.0690 L22: 4.3856 REMARK 3 L33: 7.3908 L12: -1.7571 REMARK 3 L13: -0.5983 L23: -0.7318 REMARK 3 S TENSOR REMARK 3 S11: 0.1968 S12: 1.4222 S13: -0.3399 REMARK 3 S21: -0.3520 S22: -0.2431 S23: 0.1725 REMARK 3 S31: 1.0336 S32: -1.3006 S33: 0.0463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3D3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, SODIUM CACODYLATE, MAGNESIUM REMARK 280 ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.87050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.96150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 59.87050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 46.96150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.87050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 46.96150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 59.87050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 46.96150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.87050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 46.96150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.87050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 46.96150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 59.87050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 46.96150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.87050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.87050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 46.96150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 59.87050 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -59.87050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.96150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 12 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 22 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 203 REMARK 465 PHE A 204 REMARK 465 ASP A 205 REMARK 465 PHE A 206 REMARK 465 GLU A 207 REMARK 465 GLY A 208 REMARK 465 ASN A 209 REMARK 465 LEU A 210 REMARK 465 ALA A 211 REMARK 465 LEU A 212 REMARK 465 PHE A 213 REMARK 465 ASP A 214 REMARK 465 LYS A 215 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 VAL A 218 REMARK 465 PHE A 219 REMARK 465 GLU A 220 REMARK 465 GLU A 221 REMARK 465 ILE A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 TYR A 225 REMARK 465 GLU A 226 REMARK 465 ARG A 227 REMARK 465 ARG A 228 REMARK 465 SER A 229 REMARK 465 GLY A 230 REMARK 465 THR A 231 REMARK 465 ARG A 232 REMARK 465 SER A 233 REMARK 465 ARG A 234 REMARK 465 GLY A 235 REMARK 465 ILE A 236 REMARK 465 PRO A 237 REMARK 465 ASN A 238 REMARK 465 GLU A 239 REMARK 465 ARG A 240 REMARK 465 PRO A 241 REMARK 465 THR A 242 REMARK 465 ARG A 243 REMARK 465 TYR A 244 REMARK 465 ARG A 245 REMARK 465 HIS A 246 REMARK 465 ASP A 247 REMARK 465 GLU A 248 REMARK 465 ASN A 249 REMARK 465 ILE A 250 REMARK 465 LEU A 251 REMARK 465 GLU A 252 REMARK 465 SER A 253 REMARK 465 GLU A 254 REMARK 465 PRO A 255 REMARK 465 ILE A 256 REMARK 465 VAL A 257 REMARK 465 HIS A 265 REMARK 465 ASN A 266 REMARK 465 VAL A 267 REMARK 465 GLY A 322 REMARK 465 PRO A 323 REMARK 465 ASN A 324 REMARK 465 ARG A 325 REMARK 465 LEU A 326 REMARK 465 ASN A 327 REMARK 465 PRO A 328 REMARK 465 LYS A 329 REMARK 465 ASN A 330 REMARK 465 VAL A 331 REMARK 465 HIS A 332 REMARK 465 GLU A 448 REMARK 465 VAL A 449 REMARK 465 GLU A 450 REMARK 465 GLN A 451 REMARK 465 GLY A 452 REMARK 465 ALA A 508 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ILE A 453 O HOH A 13 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 299 91.00 -65.52 REMARK 500 HIS A 360 33.77 -95.36 REMARK 500 VAL A 372 -81.17 -79.97 REMARK 500 ARG A 436 -19.38 85.39 REMARK 500 PRO A 466 81.90 -66.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D3K RELATED DB: PDB DBREF 3D3J A 203 508 UNP Q96F86 EDC3_HUMAN 203 508 SEQRES 1 A 306 ASP PHE ASP PHE GLU GLY ASN LEU ALA LEU PHE ASP LYS SEQRES 2 A 306 ALA ALA VAL PHE GLU GLU ILE ASP THR TYR GLU ARG ARG SEQRES 3 A 306 SER GLY THR ARG SER ARG GLY ILE PRO ASN GLU ARG PRO SEQRES 4 A 306 THR ARG TYR ARG HIS ASP GLU ASN ILE LEU GLU SER GLU SEQRES 5 A 306 PRO ILE VAL TYR ARG ARG ILE ILE VAL PRO HIS ASN VAL SEQRES 6 A 306 SER LYS GLU PHE CYS THR ASP SER GLY LEU VAL VAL PRO SEQRES 7 A 306 SER ILE SER TYR GLU LEU HIS LYS LYS LEU LEU SER VAL SEQRES 8 A 306 ALA GLU LYS HIS GLY LEU THR LEU GLU ARG ARG LEU GLU SEQRES 9 A 306 MET THR GLY VAL CYS ALA SER GLN MET ALA LEU THR LEU SEQRES 10 A 306 LEU GLY GLY PRO ASN ARG LEU ASN PRO LYS ASN VAL HIS SEQRES 11 A 306 GLN ARG PRO THR VAL ALA LEU LEU CYS GLY PRO HIS VAL SEQRES 12 A 306 LYS GLY ALA GLN GLY ILE SER CYS GLY ARG HIS LEU ALA SEQRES 13 A 306 ASN HIS ASP VAL GLN VAL ILE LEU PHE LEU PRO ASN PHE SEQRES 14 A 306 VAL LYS MET LEU GLU SER ILE THR ASN GLU LEU SER LEU SEQRES 15 A 306 PHE SER LYS THR GLN GLY GLN GLN VAL SER SER LEU LYS SEQRES 16 A 306 ASP LEU PRO THR SER PRO VAL ASP LEU VAL ILE ASN CYS SEQRES 17 A 306 LEU ASP CYS PRO GLU ASN VAL PHE LEU ARG ASP GLN PRO SEQRES 18 A 306 TRP TYR LYS ALA ALA VAL ALA TRP ALA ASN GLN ASN ARG SEQRES 19 A 306 ALA PRO VAL LEU SER ILE ASP PRO PRO VAL HIS GLU VAL SEQRES 20 A 306 GLU GLN GLY ILE ASP ALA LYS TRP SER LEU ALA LEU GLY SEQRES 21 A 306 LEU PRO LEU PRO LEU GLY GLU HIS ALA GLY ARG ILE TYR SEQRES 22 A 306 LEU CYS ASP ILE GLY ILE PRO GLN GLN VAL PHE GLN GLU SEQRES 23 A 306 VAL GLY ILE ASN TYR HIS SER PRO PHE GLY CYS LYS PHE SEQRES 24 A 306 VAL ILE PRO LEU HIS SER ALA FORMUL 2 HOH *30(H2 O) HELIX 1 1 SER A 283 HIS A 297 1 15 HELIX 2 2 THR A 300 GLY A 321 1 22 HELIX 3 3 HIS A 344 HIS A 360 1 17 HELIX 4 4 LEU A 375 LYS A 387 1 13 HELIX 5 5 ASN A 416 ASP A 421 5 6 HELIX 6 6 GLN A 422 ASN A 435 1 14 HELIX 7 7 GLY A 468 GLY A 472 5 5 HELIX 8 8 PRO A 482 VAL A 489 1 8 SHEET 1 A 2 GLU A 270 CYS A 272 0 SHEET 2 A 2 VAL A 278 PRO A 280 -1 O VAL A 279 N PHE A 271 SHEET 1 B 8 GLN A 391 VAL A 393 0 SHEET 2 B 8 GLN A 363 PHE A 367 1 N VAL A 364 O GLN A 391 SHEET 3 B 8 THR A 336 CYS A 341 1 N LEU A 339 O PHE A 367 SHEET 4 B 8 LEU A 406 CYS A 410 1 O CYS A 410 N LEU A 340 SHEET 5 B 8 VAL A 439 ILE A 442 1 O LEU A 440 N ASN A 409 SHEET 6 B 8 TRP A 457 LEU A 461 1 O LEU A 459 N SER A 441 SHEET 7 B 8 ARG A 473 CYS A 477 1 O CYS A 477 N ALA A 460 SHEET 8 B 8 VAL A 502 PRO A 504 -1 O ILE A 503 N LEU A 476 CRYST1 119.741 119.741 93.923 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008351 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010647 0.00000