data_3D4E # _entry.id 3D4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D4E pdb_00003d4e 10.2210/pdb3d4e/pdb RCSB RCSB047577 ? ? WWPDB D_1000047577 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390321 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3D4E _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative beta-lactamase inhibitor protein (NP_721579.1) from STREPTOCOCCUS MUTANS at 1.40 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3D4E _cell.length_a 180.695 _cell.length_b 28.373 _cell.length_c 32.640 _cell.angle_alpha 90.000 _cell.angle_beta 90.010 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D4E _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative beta-lactamase inhibitor protein' 20155.027 1 ? V150I ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 4 water nat water 18.015 157 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEDKKGGTKPSNEAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAV INAQLYKNSTVARSISNFSFSREAKIGKEDYDELKIGESYKKIVEKLGEPDVLSQS(MSE)SSDKEE(MSE)QTVWSSGI KTKSSSATIELYFENGLLKNKTQKDLE ; _entity_poly.pdbx_seq_one_letter_code_can ;GEDKKGGTKPSNEAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAV INAQLYKNSTVARSISNFSFSREAKIGKEDYDELKIGESYKKIVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSAT IELYFENGLLKNKTQKDLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 390321 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ASP n 1 4 LYS n 1 5 LYS n 1 6 GLY n 1 7 GLY n 1 8 THR n 1 9 LYS n 1 10 PRO n 1 11 SER n 1 12 ASN n 1 13 GLU n 1 14 ALA n 1 15 ALA n 1 16 LEU n 1 17 THR n 1 18 LYS n 1 19 THR n 1 20 GLU n 1 21 ASN n 1 22 LEU n 1 23 ASP n 1 24 PHE n 1 25 ARG n 1 26 LEU n 1 27 SER n 1 28 PHE n 1 29 ASN n 1 30 LYS n 1 31 ILE n 1 32 LYS n 1 33 VAL n 1 34 THR n 1 35 THR n 1 36 ASP n 1 37 GLN n 1 38 ASN n 1 39 HIS n 1 40 PHE n 1 41 SER n 1 42 GLY n 1 43 GLY n 1 44 THR n 1 45 SER n 1 46 ILE n 1 47 GLU n 1 48 GLN n 1 49 LEU n 1 50 LYS n 1 51 GLN n 1 52 TRP n 1 53 PHE n 1 54 GLY n 1 55 ASP n 1 56 PRO n 1 57 ASN n 1 58 LYS n 1 59 SER n 1 60 GLU n 1 61 GLN n 1 62 ARG n 1 63 ASN n 1 64 ALA n 1 65 GLY n 1 66 ASN n 1 67 ILE n 1 68 THR n 1 69 LEU n 1 70 ASP n 1 71 SER n 1 72 TYR n 1 73 THR n 1 74 TRP n 1 75 VAL n 1 76 LYS n 1 77 ASP n 1 78 GLY n 1 79 ALA n 1 80 VAL n 1 81 ILE n 1 82 ASN n 1 83 ALA n 1 84 GLN n 1 85 LEU n 1 86 TYR n 1 87 LYS n 1 88 ASN n 1 89 SER n 1 90 THR n 1 91 VAL n 1 92 ALA n 1 93 ARG n 1 94 SER n 1 95 ILE n 1 96 SER n 1 97 ASN n 1 98 PHE n 1 99 SER n 1 100 PHE n 1 101 SER n 1 102 ARG n 1 103 GLU n 1 104 ALA n 1 105 LYS n 1 106 ILE n 1 107 GLY n 1 108 LYS n 1 109 GLU n 1 110 ASP n 1 111 TYR n 1 112 ASP n 1 113 GLU n 1 114 LEU n 1 115 LYS n 1 116 ILE n 1 117 GLY n 1 118 GLU n 1 119 SER n 1 120 TYR n 1 121 LYS n 1 122 LYS n 1 123 ILE n 1 124 VAL n 1 125 GLU n 1 126 LYS n 1 127 LEU n 1 128 GLY n 1 129 GLU n 1 130 PRO n 1 131 ASP n 1 132 VAL n 1 133 LEU n 1 134 SER n 1 135 GLN n 1 136 SER n 1 137 MSE n 1 138 SER n 1 139 SER n 1 140 ASP n 1 141 LYS n 1 142 GLU n 1 143 GLU n 1 144 MSE n 1 145 GLN n 1 146 THR n 1 147 VAL n 1 148 TRP n 1 149 SER n 1 150 SER n 1 151 GLY n 1 152 ILE n 1 153 LYS n 1 154 THR n 1 155 LYS n 1 156 SER n 1 157 SER n 1 158 SER n 1 159 ALA n 1 160 THR n 1 161 ILE n 1 162 GLU n 1 163 LEU n 1 164 TYR n 1 165 PHE n 1 166 GLU n 1 167 ASN n 1 168 GLY n 1 169 LEU n 1 170 LEU n 1 171 LYS n 1 172 ASN n 1 173 LYS n 1 174 THR n 1 175 GLN n 1 176 LYS n 1 177 ASP n 1 178 LEU n 1 179 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_721579.1, SMU_1196c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ;Clarke [NCTC 10449]' ; _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus mutans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1309 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 25175 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8DTX1_STRMU _struct_ref.pdbx_db_accession Q8DTX1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EDKKGGTKPSNEAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVI NAQLYKNSTVARSISNFSFSREAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATI ELYFENGLLKNKTQKDLE ; _struct_ref.pdbx_align_begin 29 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D4E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 179 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8DTX1 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 206 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 29 _struct_ref_seq.pdbx_auth_seq_align_end 206 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D4E GLY A 1 ? UNP Q8DTX1 ? ? 'expression tag' 0 1 1 3D4E ILE A 123 ? UNP Q8DTX1 VAL 150 'SEE REMARK 999' 150 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3D4E # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.0000M LiCl, 20.0000% PEG-6000, 0.1M Citrate pH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-03-16 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97932 1.0 3 0.97916 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97932,0.97916 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3D4E _reflns.d_resolution_high 1.40 _reflns.d_resolution_low 32.634 _reflns.number_obs 32922 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_netI_over_sigmaI 12.900 _reflns.percent_possible_obs 99.400 _reflns.B_iso_Wilson_estimate 16.262 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.40 1.45 11443 ? 3244 0.501 2.4 ? ? ? ? ? 98.80 1 1 1.45 1.51 11778 ? 3344 0.342 3.4 ? ? ? ? ? 99.20 2 1 1.51 1.58 11677 ? 3315 0.241 4.8 ? ? ? ? ? 99.30 3 1 1.58 1.66 11168 ? 3160 0.179 6.3 ? ? ? ? ? 99.90 4 1 1.66 1.76 11114 ? 3137 0.131 8.4 ? ? ? ? ? 99.60 5 1 1.76 1.90 11971 ? 3392 0.086 12.1 ? ? ? ? ? 99.60 6 1 1.90 2.09 11476 ? 3253 0.054 17.4 ? ? ? ? ? 99.60 7 1 2.09 2.39 11645 ? 3325 0.043 21.1 ? ? ? ? ? 99.60 8 1 2.39 3.01 11760 ? 3333 0.036 24.3 ? ? ? ? ? 99.60 9 1 3.01 ? 11712 ? 3419 0.028 27.7 ? ? ? ? ? 98.50 10 1 # _refine.entry_id 3D4E _refine.ls_d_res_high 1.400 _refine.ls_d_res_low 32.634 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.370 _refine.ls_number_reflns_obs 32922 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.ACETATE ION FROM CRYSTALLIZATION AND ETHYLENE GLYCOL MOLECULES FROM CRYO CONDITION ARE MODELED IN THE STRUCTURE. 5.THERE IS A LONG REGION OF UNMODELED DENSITY NEAR RESIDUE 113 IN THIS STRUCTURE. ; _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_R_work 0.175 _refine.ls_R_factor_R_free 0.201 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1667 _refine.B_iso_mean 14.513 _refine.aniso_B[1][1] -0.670 _refine.aniso_B[2][2] 1.290 _refine.aniso_B[3][3] -0.620 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.440 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.pdbx_overall_ESU_R 0.062 _refine.pdbx_overall_ESU_R_Free 0.064 _refine.overall_SU_ML 0.038 _refine.overall_SU_B 2.001 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1250 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1423 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 32.634 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1400 0.017 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 921 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1904 1.539 1.943 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2266 1.419 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 186 6.252 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 68 37.638 26.324 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 240 10.884 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 28.040 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 205 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1653 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 276 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 882 1.714 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 357 0.439 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1427 2.794 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 518 4.214 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 477 6.491 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.360 _refine_ls_shell.number_reflns_R_work 2275 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.R_factor_R_free 0.282 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2394 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D4E _struct.title 'Crystal structure of putative beta-lactamase inhibitor protein (NP_721579.1) from STREPTOCOCCUS MUTANS at 1.40 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text ;NP_721579.1, putative beta-lactamase inhibitor protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Unknown function, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3D4E # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 21 ? ASN A 29 ? ASN A 48 ASN A 56 1 ? 9 HELX_P HELX_P2 2 SER A 45 ? GLY A 54 ? SER A 72 GLY A 81 1 ? 10 HELX_P HELX_P3 3 GLY A 107 ? LEU A 114 ? GLY A 134 LEU A 141 1 ? 8 HELX_P HELX_P4 4 SER A 119 ? GLY A 128 ? SER A 146 GLY A 155 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 136 C ? ? ? 1_555 A MSE 137 N ? ? A SER 163 A MSE 164 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale2 covale both ? A MSE 137 C ? ? ? 1_555 A SER 138 N ? ? A MSE 164 A SER 165 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? A GLU 143 C A ? ? 1_555 A MSE 144 N ? ? A GLU 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale4 covale both ? A GLU 143 C B ? ? 1_555 A MSE 144 N ? ? A GLU 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? A MSE 144 C ? ? ? 1_555 A GLN 145 N ? ? A MSE 171 A GLN 172 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 58 ? ALA A 64 ? LYS A 85 ALA A 91 A 2 ILE A 67 ? LYS A 76 ? ILE A 94 LYS A 103 A 3 ALA A 79 ? TYR A 86 ? ALA A 106 TYR A 113 A 4 SER A 89 ? SER A 96 ? SER A 116 SER A 123 A 5 VAL A 132 ? MSE A 137 ? VAL A 159 MSE A 164 A 6 GLU A 142 ? TRP A 148 ? GLU A 169 TRP A 175 A 7 THR A 160 ? GLU A 166 ? THR A 187 GLU A 193 A 8 LEU A 169 ? LYS A 176 ? LEU A 196 LYS A 203 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 62 ? N ARG A 89 O LEU A 69 ? O LEU A 96 A 2 3 N TRP A 74 ? N TRP A 101 O ILE A 81 ? O ILE A 108 A 3 4 N GLN A 84 ? N GLN A 111 O VAL A 91 ? O VAL A 118 A 4 5 N ARG A 93 ? N ARG A 120 O GLN A 135 ? O GLN A 162 A 5 6 N SER A 134 ? N SER A 161 O GLN A 145 ? O GLN A 172 A 6 7 N MSE A 144 ? N MSE A 171 O PHE A 165 ? O PHE A 192 A 7 8 N TYR A 164 ? N TYR A 191 O LYS A 171 ? O LYS A 198 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 1 ? 5 'BINDING SITE FOR RESIDUE ACT A 1' AC2 Software A EDO 2 ? 4 'BINDING SITE FOR RESIDUE EDO A 2' AC3 Software A EDO 3 ? 7 'BINDING SITE FOR RESIDUE EDO A 3' AC4 Software A EDO 4 ? 6 'BINDING SITE FOR RESIDUE EDO A 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 136 ? SER A 163 . ? 1_555 ? 2 AC1 5 SER A 138 ? SER A 165 . ? 1_555 ? 3 AC1 5 LYS A 141 ? LYS A 168 . ? 1_555 ? 4 AC1 5 GLU A 143 ? GLU A 170 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 347 . ? 1_555 ? 6 AC2 4 GLU A 60 ? GLU A 87 . ? 1_555 ? 7 AC2 4 GLN A 61 ? GLN A 88 . ? 1_555 ? 8 AC2 4 ASP A 70 ? ASP A 97 . ? 1_555 ? 9 AC2 4 TYR A 72 ? TYR A 99 . ? 1_555 ? 10 AC3 7 ARG A 93 ? ARG A 120 . ? 1_555 ? 11 AC3 7 TYR A 120 ? TYR A 147 . ? 1_555 ? 12 AC3 7 LEU A 133 ? LEU A 160 . ? 1_555 ? 13 AC3 7 HOH F . ? HOH A 231 . ? 1_555 ? 14 AC3 7 HOH F . ? HOH A 241 . ? 1_555 ? 15 AC3 7 HOH F . ? HOH A 249 . ? 1_555 ? 16 AC3 7 HOH F . ? HOH A 288 . ? 1_555 ? 17 AC4 6 GLU A 113 ? GLU A 140 . ? 1_555 ? 18 AC4 6 LYS A 115 ? LYS A 142 . ? 1_555 ? 19 AC4 6 GLU A 118 ? GLU A 145 . ? 1_555 ? 20 AC4 6 LYS A 122 ? LYS A 149 . ? 1_555 ? 21 AC4 6 HOH F . ? HOH A 248 . ? 1_555 ? 22 AC4 6 HOH F . ? HOH A 353 . ? 1_555 ? # _atom_sites.entry_id 3D4E _atom_sites.fract_transf_matrix[1][1] 0.005534 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000001 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030637 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLU 2 29 ? ? ? A . n A 1 3 ASP 3 30 ? ? ? A . n A 1 4 LYS 4 31 ? ? ? A . n A 1 5 LYS 5 32 ? ? ? A . n A 1 6 GLY 6 33 ? ? ? A . n A 1 7 GLY 7 34 ? ? ? A . n A 1 8 THR 8 35 ? ? ? A . n A 1 9 LYS 9 36 ? ? ? A . n A 1 10 PRO 10 37 ? ? ? A . n A 1 11 SER 11 38 ? ? ? A . n A 1 12 ASN 12 39 ? ? ? A . n A 1 13 GLU 13 40 ? ? ? A . n A 1 14 ALA 14 41 ? ? ? A . n A 1 15 ALA 15 42 ? ? ? A . n A 1 16 LEU 16 43 ? ? ? A . n A 1 17 THR 17 44 ? ? ? A . n A 1 18 LYS 18 45 45 LYS LYS A . n A 1 19 THR 19 46 46 THR THR A . n A 1 20 GLU 20 47 47 GLU GLU A . n A 1 21 ASN 21 48 48 ASN ASN A . n A 1 22 LEU 22 49 49 LEU LEU A . n A 1 23 ASP 23 50 50 ASP ASP A . n A 1 24 PHE 24 51 51 PHE PHE A . n A 1 25 ARG 25 52 52 ARG ARG A . n A 1 26 LEU 26 53 53 LEU LEU A . n A 1 27 SER 27 54 54 SER SER A . n A 1 28 PHE 28 55 55 PHE PHE A . n A 1 29 ASN 29 56 56 ASN ASN A . n A 1 30 LYS 30 57 57 LYS LYS A . n A 1 31 ILE 31 58 58 ILE ILE A . n A 1 32 LYS 32 59 59 LYS LYS A . n A 1 33 VAL 33 60 60 VAL VAL A . n A 1 34 THR 34 61 61 THR THR A . n A 1 35 THR 35 62 62 THR THR A . n A 1 36 ASP 36 63 63 ASP ASP A . n A 1 37 GLN 37 64 64 GLN GLN A . n A 1 38 ASN 38 65 65 ASN ASN A . n A 1 39 HIS 39 66 66 HIS HIS A . n A 1 40 PHE 40 67 67 PHE PHE A . n A 1 41 SER 41 68 68 SER SER A . n A 1 42 GLY 42 69 69 GLY GLY A . n A 1 43 GLY 43 70 70 GLY GLY A . n A 1 44 THR 44 71 71 THR THR A . n A 1 45 SER 45 72 72 SER SER A . n A 1 46 ILE 46 73 73 ILE ILE A . n A 1 47 GLU 47 74 74 GLU GLU A . n A 1 48 GLN 48 75 75 GLN GLN A . n A 1 49 LEU 49 76 76 LEU LEU A . n A 1 50 LYS 50 77 77 LYS LYS A . n A 1 51 GLN 51 78 78 GLN GLN A . n A 1 52 TRP 52 79 79 TRP TRP A . n A 1 53 PHE 53 80 80 PHE PHE A . n A 1 54 GLY 54 81 81 GLY GLY A . n A 1 55 ASP 55 82 82 ASP ASP A . n A 1 56 PRO 56 83 83 PRO PRO A . n A 1 57 ASN 57 84 84 ASN ASN A . n A 1 58 LYS 58 85 85 LYS LYS A . n A 1 59 SER 59 86 86 SER SER A . n A 1 60 GLU 60 87 87 GLU GLU A . n A 1 61 GLN 61 88 88 GLN GLN A . n A 1 62 ARG 62 89 89 ARG ARG A . n A 1 63 ASN 63 90 90 ASN ASN A . n A 1 64 ALA 64 91 91 ALA ALA A . n A 1 65 GLY 65 92 92 GLY GLY A . n A 1 66 ASN 66 93 93 ASN ASN A . n A 1 67 ILE 67 94 94 ILE ILE A . n A 1 68 THR 68 95 95 THR THR A . n A 1 69 LEU 69 96 96 LEU LEU A . n A 1 70 ASP 70 97 97 ASP ASP A . n A 1 71 SER 71 98 98 SER SER A . n A 1 72 TYR 72 99 99 TYR TYR A . n A 1 73 THR 73 100 100 THR THR A . n A 1 74 TRP 74 101 101 TRP TRP A . n A 1 75 VAL 75 102 102 VAL VAL A . n A 1 76 LYS 76 103 103 LYS LYS A . n A 1 77 ASP 77 104 104 ASP ASP A . n A 1 78 GLY 78 105 105 GLY GLY A . n A 1 79 ALA 79 106 106 ALA ALA A . n A 1 80 VAL 80 107 107 VAL VAL A . n A 1 81 ILE 81 108 108 ILE ILE A . n A 1 82 ASN 82 109 109 ASN ASN A . n A 1 83 ALA 83 110 110 ALA ALA A . n A 1 84 GLN 84 111 111 GLN GLN A . n A 1 85 LEU 85 112 112 LEU LEU A . n A 1 86 TYR 86 113 113 TYR TYR A . n A 1 87 LYS 87 114 114 LYS LYS A . n A 1 88 ASN 88 115 115 ASN ASN A . n A 1 89 SER 89 116 116 SER SER A . n A 1 90 THR 90 117 117 THR THR A . n A 1 91 VAL 91 118 118 VAL VAL A . n A 1 92 ALA 92 119 119 ALA ALA A . n A 1 93 ARG 93 120 120 ARG ARG A . n A 1 94 SER 94 121 121 SER SER A . n A 1 95 ILE 95 122 122 ILE ILE A . n A 1 96 SER 96 123 123 SER SER A . n A 1 97 ASN 97 124 124 ASN ASN A . n A 1 98 PHE 98 125 125 PHE PHE A . n A 1 99 SER 99 126 126 SER SER A . n A 1 100 PHE 100 127 127 PHE PHE A . n A 1 101 SER 101 128 128 SER SER A . n A 1 102 ARG 102 129 129 ARG ARG A . n A 1 103 GLU 103 130 130 GLU GLU A . n A 1 104 ALA 104 131 131 ALA ALA A . n A 1 105 LYS 105 132 132 LYS LYS A . n A 1 106 ILE 106 133 133 ILE ILE A . n A 1 107 GLY 107 134 134 GLY GLY A . n A 1 108 LYS 108 135 135 LYS LYS A . n A 1 109 GLU 109 136 136 GLU GLU A . n A 1 110 ASP 110 137 137 ASP ASP A . n A 1 111 TYR 111 138 138 TYR TYR A . n A 1 112 ASP 112 139 139 ASP ASP A . n A 1 113 GLU 113 140 140 GLU GLU A . n A 1 114 LEU 114 141 141 LEU LEU A . n A 1 115 LYS 115 142 142 LYS LYS A . n A 1 116 ILE 116 143 143 ILE ILE A . n A 1 117 GLY 117 144 144 GLY GLY A . n A 1 118 GLU 118 145 145 GLU GLU A . n A 1 119 SER 119 146 146 SER SER A . n A 1 120 TYR 120 147 147 TYR TYR A . n A 1 121 LYS 121 148 148 LYS LYS A . n A 1 122 LYS 122 149 149 LYS LYS A . n A 1 123 ILE 123 150 150 ILE ILE A . n A 1 124 VAL 124 151 151 VAL VAL A . n A 1 125 GLU 125 152 152 GLU GLU A . n A 1 126 LYS 126 153 153 LYS LYS A . n A 1 127 LEU 127 154 154 LEU LEU A . n A 1 128 GLY 128 155 155 GLY GLY A . n A 1 129 GLU 129 156 156 GLU GLU A . n A 1 130 PRO 130 157 157 PRO PRO A . n A 1 131 ASP 131 158 158 ASP ASP A . n A 1 132 VAL 132 159 159 VAL VAL A . n A 1 133 LEU 133 160 160 LEU LEU A . n A 1 134 SER 134 161 161 SER SER A . n A 1 135 GLN 135 162 162 GLN GLN A . n A 1 136 SER 136 163 163 SER SER A . n A 1 137 MSE 137 164 164 MSE MSE A . n A 1 138 SER 138 165 165 SER SER A . n A 1 139 SER 139 166 166 SER SER A . n A 1 140 ASP 140 167 167 ASP ASP A . n A 1 141 LYS 141 168 168 LYS LYS A . n A 1 142 GLU 142 169 169 GLU GLU A . n A 1 143 GLU 143 170 170 GLU GLU A . n A 1 144 MSE 144 171 171 MSE MSE A . n A 1 145 GLN 145 172 172 GLN GLN A . n A 1 146 THR 146 173 173 THR THR A . n A 1 147 VAL 147 174 174 VAL VAL A . n A 1 148 TRP 148 175 175 TRP TRP A . n A 1 149 SER 149 176 176 SER SER A . n A 1 150 SER 150 177 177 SER SER A . n A 1 151 GLY 151 178 178 GLY GLY A . n A 1 152 ILE 152 179 179 ILE ILE A . n A 1 153 LYS 153 180 180 LYS LYS A . n A 1 154 THR 154 181 181 THR THR A . n A 1 155 LYS 155 182 182 LYS LYS A . n A 1 156 SER 156 183 183 SER SER A . n A 1 157 SER 157 184 184 SER SER A . n A 1 158 SER 158 185 185 SER SER A . n A 1 159 ALA 159 186 186 ALA ALA A . n A 1 160 THR 160 187 187 THR THR A . n A 1 161 ILE 161 188 188 ILE ILE A . n A 1 162 GLU 162 189 189 GLU GLU A . n A 1 163 LEU 163 190 190 LEU LEU A . n A 1 164 TYR 164 191 191 TYR TYR A . n A 1 165 PHE 165 192 192 PHE PHE A . n A 1 166 GLU 166 193 193 GLU GLU A . n A 1 167 ASN 167 194 194 ASN ASN A . n A 1 168 GLY 168 195 195 GLY GLY A . n A 1 169 LEU 169 196 196 LEU LEU A . n A 1 170 LEU 170 197 197 LEU LEU A . n A 1 171 LYS 171 198 198 LYS LYS A . n A 1 172 ASN 172 199 199 ASN ASN A . n A 1 173 LYS 173 200 200 LYS LYS A . n A 1 174 THR 174 201 201 THR THR A . n A 1 175 GLN 175 202 202 GLN GLN A . n A 1 176 LYS 176 203 203 LYS LYS A . n A 1 177 ASP 177 204 204 ASP ASP A . n A 1 178 LEU 178 205 205 LEU LEU A . n A 1 179 GLU 179 206 206 GLU GLU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 1 1 ACT ACT A . C 3 EDO 1 2 2 EDO EDO A . D 3 EDO 1 3 3 EDO EDO A . E 3 EDO 1 4 4 EDO EDO A . F 4 HOH 1 207 5 HOH HOH A . F 4 HOH 2 208 6 HOH HOH A . F 4 HOH 3 209 7 HOH HOH A . F 4 HOH 4 210 8 HOH HOH A . F 4 HOH 5 211 9 HOH HOH A . F 4 HOH 6 212 10 HOH HOH A . F 4 HOH 7 213 11 HOH HOH A . F 4 HOH 8 214 12 HOH HOH A . F 4 HOH 9 215 13 HOH HOH A . F 4 HOH 10 216 14 HOH HOH A . F 4 HOH 11 217 15 HOH HOH A . F 4 HOH 12 218 16 HOH HOH A . F 4 HOH 13 219 17 HOH HOH A . F 4 HOH 14 220 18 HOH HOH A . F 4 HOH 15 221 19 HOH HOH A . F 4 HOH 16 222 20 HOH HOH A . F 4 HOH 17 223 21 HOH HOH A . F 4 HOH 18 224 22 HOH HOH A . F 4 HOH 19 225 23 HOH HOH A . F 4 HOH 20 226 24 HOH HOH A . F 4 HOH 21 227 25 HOH HOH A . F 4 HOH 22 228 26 HOH HOH A . F 4 HOH 23 229 27 HOH HOH A . F 4 HOH 24 230 28 HOH HOH A . F 4 HOH 25 231 29 HOH HOH A . F 4 HOH 26 232 30 HOH HOH A . F 4 HOH 27 233 31 HOH HOH A . F 4 HOH 28 234 32 HOH HOH A . F 4 HOH 29 235 33 HOH HOH A . F 4 HOH 30 236 34 HOH HOH A . F 4 HOH 31 237 35 HOH HOH A . F 4 HOH 32 238 36 HOH HOH A . F 4 HOH 33 239 37 HOH HOH A . F 4 HOH 34 240 38 HOH HOH A . F 4 HOH 35 241 39 HOH HOH A . F 4 HOH 36 242 40 HOH HOH A . F 4 HOH 37 243 41 HOH HOH A . F 4 HOH 38 244 42 HOH HOH A . F 4 HOH 39 245 43 HOH HOH A . F 4 HOH 40 246 44 HOH HOH A . F 4 HOH 41 247 45 HOH HOH A . F 4 HOH 42 248 46 HOH HOH A . F 4 HOH 43 249 47 HOH HOH A . F 4 HOH 44 250 48 HOH HOH A . F 4 HOH 45 251 49 HOH HOH A . F 4 HOH 46 252 50 HOH HOH A . F 4 HOH 47 253 51 HOH HOH A . F 4 HOH 48 254 52 HOH HOH A . F 4 HOH 49 255 53 HOH HOH A . F 4 HOH 50 256 54 HOH HOH A . F 4 HOH 51 257 55 HOH HOH A . F 4 HOH 52 258 56 HOH HOH A . F 4 HOH 53 259 57 HOH HOH A . F 4 HOH 54 260 58 HOH HOH A . F 4 HOH 55 261 59 HOH HOH A . F 4 HOH 56 262 60 HOH HOH A . F 4 HOH 57 263 61 HOH HOH A . F 4 HOH 58 264 62 HOH HOH A . F 4 HOH 59 265 63 HOH HOH A . F 4 HOH 60 266 64 HOH HOH A . F 4 HOH 61 267 65 HOH HOH A . F 4 HOH 62 268 66 HOH HOH A . F 4 HOH 63 269 67 HOH HOH A . F 4 HOH 64 270 68 HOH HOH A . F 4 HOH 65 271 69 HOH HOH A . F 4 HOH 66 272 70 HOH HOH A . F 4 HOH 67 273 71 HOH HOH A . F 4 HOH 68 274 72 HOH HOH A . F 4 HOH 69 275 73 HOH HOH A . F 4 HOH 70 276 74 HOH HOH A . F 4 HOH 71 277 75 HOH HOH A . F 4 HOH 72 278 76 HOH HOH A . F 4 HOH 73 279 77 HOH HOH A . F 4 HOH 74 280 78 HOH HOH A . F 4 HOH 75 281 79 HOH HOH A . F 4 HOH 76 282 80 HOH HOH A . F 4 HOH 77 283 81 HOH HOH A . F 4 HOH 78 284 82 HOH HOH A . F 4 HOH 79 285 83 HOH HOH A . F 4 HOH 80 286 84 HOH HOH A . F 4 HOH 81 287 85 HOH HOH A . F 4 HOH 82 288 86 HOH HOH A . F 4 HOH 83 289 87 HOH HOH A . F 4 HOH 84 290 88 HOH HOH A . F 4 HOH 85 291 89 HOH HOH A . F 4 HOH 86 292 90 HOH HOH A . F 4 HOH 87 293 91 HOH HOH A . F 4 HOH 88 294 92 HOH HOH A . F 4 HOH 89 295 93 HOH HOH A . F 4 HOH 90 296 94 HOH HOH A . F 4 HOH 91 297 95 HOH HOH A . F 4 HOH 92 298 96 HOH HOH A . F 4 HOH 93 299 97 HOH HOH A . F 4 HOH 94 300 98 HOH HOH A . F 4 HOH 95 301 99 HOH HOH A . F 4 HOH 96 302 100 HOH HOH A . F 4 HOH 97 303 101 HOH HOH A . F 4 HOH 98 304 102 HOH HOH A . F 4 HOH 99 305 103 HOH HOH A . F 4 HOH 100 306 104 HOH HOH A . F 4 HOH 101 307 105 HOH HOH A . F 4 HOH 102 308 106 HOH HOH A . F 4 HOH 103 309 107 HOH HOH A . F 4 HOH 104 310 108 HOH HOH A . F 4 HOH 105 311 109 HOH HOH A . F 4 HOH 106 312 110 HOH HOH A . F 4 HOH 107 313 111 HOH HOH A . F 4 HOH 108 314 112 HOH HOH A . F 4 HOH 109 315 113 HOH HOH A . F 4 HOH 110 316 114 HOH HOH A . F 4 HOH 111 317 115 HOH HOH A . F 4 HOH 112 318 116 HOH HOH A . F 4 HOH 113 319 117 HOH HOH A . F 4 HOH 114 320 118 HOH HOH A . F 4 HOH 115 321 119 HOH HOH A . F 4 HOH 116 322 120 HOH HOH A . F 4 HOH 117 323 121 HOH HOH A . F 4 HOH 118 324 122 HOH HOH A . F 4 HOH 119 325 123 HOH HOH A . F 4 HOH 120 326 124 HOH HOH A . F 4 HOH 121 327 125 HOH HOH A . F 4 HOH 122 328 126 HOH HOH A . F 4 HOH 123 329 127 HOH HOH A . F 4 HOH 124 330 128 HOH HOH A . F 4 HOH 125 331 129 HOH HOH A . F 4 HOH 126 332 130 HOH HOH A . F 4 HOH 127 333 131 HOH HOH A . F 4 HOH 128 334 132 HOH HOH A . F 4 HOH 129 335 133 HOH HOH A . F 4 HOH 130 336 134 HOH HOH A . F 4 HOH 131 337 135 HOH HOH A . F 4 HOH 132 338 136 HOH HOH A . F 4 HOH 133 339 137 HOH HOH A . F 4 HOH 134 340 138 HOH HOH A . F 4 HOH 135 341 139 HOH HOH A . F 4 HOH 136 342 140 HOH HOH A . F 4 HOH 137 343 141 HOH HOH A . F 4 HOH 138 344 142 HOH HOH A . F 4 HOH 139 345 143 HOH HOH A . F 4 HOH 140 346 144 HOH HOH A . F 4 HOH 141 347 145 HOH HOH A . F 4 HOH 142 348 146 HOH HOH A . F 4 HOH 143 349 147 HOH HOH A . F 4 HOH 144 350 148 HOH HOH A . F 4 HOH 145 351 149 HOH HOH A . F 4 HOH 146 352 150 HOH HOH A . F 4 HOH 147 353 151 HOH HOH A . F 4 HOH 148 354 152 HOH HOH A . F 4 HOH 149 355 153 HOH HOH A . F 4 HOH 150 356 154 HOH HOH A . F 4 HOH 151 357 155 HOH HOH A . F 4 HOH 152 358 156 HOH HOH A . F 4 HOH 153 359 157 HOH HOH A . F 4 HOH 154 360 158 HOH HOH A . F 4 HOH 155 361 159 HOH HOH A . F 4 HOH 156 362 160 HOH HOH A . F 4 HOH 157 363 161 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 137 A MSE 164 ? MET SELENOMETHIONINE 2 A MSE 144 A MSE 171 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 66.6507 _pdbx_refine_tls.origin_y 23.0335 _pdbx_refine_tls.origin_z 12.3906 _pdbx_refine_tls.T[1][1] -0.0302 _pdbx_refine_tls.T[2][2] -0.0213 _pdbx_refine_tls.T[3][3] -0.0248 _pdbx_refine_tls.T[1][2] -0.0075 _pdbx_refine_tls.T[1][3] 0.0035 _pdbx_refine_tls.T[2][3] -0.0141 _pdbx_refine_tls.L[1][1] 1.1819 _pdbx_refine_tls.L[2][2] 0.9294 _pdbx_refine_tls.L[3][3] 0.4087 _pdbx_refine_tls.L[1][2] -0.4192 _pdbx_refine_tls.L[1][3] -0.1541 _pdbx_refine_tls.L[2][3] 0.0917 _pdbx_refine_tls.S[1][1] -0.0590 _pdbx_refine_tls.S[2][2] 0.0814 _pdbx_refine_tls.S[3][3] -0.0225 _pdbx_refine_tls.S[1][2] -0.0055 _pdbx_refine_tls.S[1][3] 0.0228 _pdbx_refine_tls.S[2][3] -0.1876 _pdbx_refine_tls.S[2][1] -0.0122 _pdbx_refine_tls.S[3][1] 0.0007 _pdbx_refine_tls.S[3][2] 0.0115 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 18 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 179 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 45 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 206 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD AUTOSHARP ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3D4E _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED CONSTRUCT CONTAINS RESIDUES 29-206 OF THE TARGET SEQUENCE. THE STRAIN CLONED, STREPTOCOCCUS MUTANS CLARKE, DIFFERS FROM THE DATABASE STRAIN, STREPTOCOCCUS MUTANS UA159. SEQUENCING OF THE CLONED CONSTRUCT SHOWS AN ISOLUCINE AT POSITION 150 INSTEAD OF A VALINE. THE ISOLUCINE AT POSITION 150 IS SUPPORTED BY THE ELECTRON DENSITY. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 120 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 120 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 120 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.38 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.08 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 168 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id B _pdbx_validate_torsion.phi -170.69 _pdbx_validate_torsion.psi 146.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 45 ? CG ? A LYS 18 CG 2 1 Y 1 A LYS 45 ? CD ? A LYS 18 CD 3 1 Y 1 A LYS 45 ? CE ? A LYS 18 CE 4 1 Y 1 A LYS 45 ? NZ ? A LYS 18 NZ 5 1 Y 1 A GLU 47 ? CG ? A GLU 20 CG 6 1 Y 1 A GLU 47 ? CD ? A GLU 20 CD 7 1 Y 1 A GLU 47 ? OE1 ? A GLU 20 OE1 8 1 Y 1 A GLU 47 ? OE2 ? A GLU 20 OE2 9 1 Y 1 A GLU 130 ? CG ? A GLU 103 CG 10 1 Y 1 A GLU 130 ? CD ? A GLU 103 CD 11 1 Y 1 A GLU 130 ? OE1 ? A GLU 103 OE1 12 1 Y 1 A GLU 130 ? OE2 ? A GLU 103 OE2 13 1 Y 1 A LYS 135 ? CD ? A LYS 108 CD 14 1 Y 1 A LYS 135 ? CE ? A LYS 108 CE 15 1 Y 1 A LYS 135 ? NZ ? A LYS 108 NZ 16 1 Y 1 A GLU 136 ? CG ? A GLU 109 CG 17 1 Y 1 A GLU 136 ? CD ? A GLU 109 CD 18 1 Y 1 A GLU 136 ? OE1 ? A GLU 109 OE1 19 1 Y 1 A GLU 136 ? OE2 ? A GLU 109 OE2 20 1 Y 1 A LYS 142 ? CD ? A LYS 115 CD 21 1 Y 1 A LYS 142 ? CE ? A LYS 115 CE 22 1 Y 1 A LYS 142 ? NZ ? A LYS 115 NZ 23 1 Y 1 A LYS 148 ? CD ? A LYS 121 CD 24 1 Y 1 A LYS 148 ? CE ? A LYS 121 CE 25 1 Y 1 A LYS 148 ? NZ ? A LYS 121 NZ 26 1 Y 1 A LYS 153 ? CD ? A LYS 126 CD 27 1 Y 1 A LYS 153 ? CE ? A LYS 126 CE 28 1 Y 1 A LYS 153 ? NZ ? A LYS 126 NZ 29 1 Y 1 A LYS 168 ? CE ? A LYS 141 CE 30 1 Y 1 A LYS 168 ? NZ ? A LYS 141 NZ 31 1 Y 1 A LYS 180 ? CG ? A LYS 153 CG 32 1 Y 1 A LYS 180 ? CD ? A LYS 153 CD 33 1 Y 1 A LYS 180 ? CE ? A LYS 153 CE 34 1 Y 1 A LYS 180 ? NZ ? A LYS 153 NZ 35 1 Y 1 A LYS 182 ? CG ? A LYS 155 CG 36 1 Y 1 A LYS 182 ? CD ? A LYS 155 CD 37 1 Y 1 A LYS 182 ? CE ? A LYS 155 CE 38 1 Y 1 A LYS 182 ? NZ ? A LYS 155 NZ 39 1 Y 1 A SER 184 ? OG ? A SER 157 OG 40 1 Y 1 A SER 185 ? OG ? A SER 158 OG 41 1 Y 1 A LYS 198 ? CD ? A LYS 171 CD 42 1 Y 1 A LYS 198 ? CE ? A LYS 171 CE 43 1 Y 1 A LYS 198 ? NZ ? A LYS 171 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLU 29 ? A GLU 2 3 1 Y 1 A ASP 30 ? A ASP 3 4 1 Y 1 A LYS 31 ? A LYS 4 5 1 Y 1 A LYS 32 ? A LYS 5 6 1 Y 1 A GLY 33 ? A GLY 6 7 1 Y 1 A GLY 34 ? A GLY 7 8 1 Y 1 A THR 35 ? A THR 8 9 1 Y 1 A LYS 36 ? A LYS 9 10 1 Y 1 A PRO 37 ? A PRO 10 11 1 Y 1 A SER 38 ? A SER 11 12 1 Y 1 A ASN 39 ? A ASN 12 13 1 Y 1 A GLU 40 ? A GLU 13 14 1 Y 1 A ALA 41 ? A ALA 14 15 1 Y 1 A ALA 42 ? A ALA 15 16 1 Y 1 A LEU 43 ? A LEU 16 17 1 Y 1 A THR 44 ? A THR 17 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #