data_3D6W # _entry.id 3D6W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3D6W RCSB RCSB047667 WWPDB D_1000047667 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC7590 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3D6W _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Evdokimova, E.' 2 'Kudritska, M.' 3 'Savchenko, A.' 4 'Edwards, A.M.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'X-ray crystal structure of LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'OSIPIUK, J.' 1 primary 'EVDOKIMOVA, E.' 2 primary 'KUDRITSKA, M.' 3 primary 'SAVCHENKO, A.' 4 primary 'EDWARDS, A.M.' 5 primary 'JOACHIMIAK, A.' 6 # _cell.length_a 88.784 _cell.length_b 88.784 _cell.length_c 74.425 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3D6W _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 42 2 2' _symmetry.entry_id 3D6W _symmetry.Int_Tables_number 93 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-accepting/DNA response regulator' 12840.362 2 ? ? 'LytTr DNA-binding domain, residues 106-214' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 non-polymer syn 'FORMIC ACID' 46.025 2 ? ? ? ? 5 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GKSVVTLKTTDGWIPVPFSKV(MSE)YLEAKDKKTYVNAEELTGTHKYSLQEFEYLLPKDSFIRCHRSFIVNVNHIKAIY PDTHSTFLLS(MSE)DNGERVPVSQSYASYFRKLLGFGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GKSVVTLKTTDGWIPVPFSKVMYLEAKDKKTYVNAEELTGTHKYSLQEFEYLLPKDSFIRCHRSFIVNVNHIKAIYPDTH STFLLSMDNGERVPVSQSYASYFRKLLGFGS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC7590 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 SER n 1 4 VAL n 1 5 VAL n 1 6 THR n 1 7 LEU n 1 8 LYS n 1 9 THR n 1 10 THR n 1 11 ASP n 1 12 GLY n 1 13 TRP n 1 14 ILE n 1 15 PRO n 1 16 VAL n 1 17 PRO n 1 18 PHE n 1 19 SER n 1 20 LYS n 1 21 VAL n 1 22 MSE n 1 23 TYR n 1 24 LEU n 1 25 GLU n 1 26 ALA n 1 27 LYS n 1 28 ASP n 1 29 LYS n 1 30 LYS n 1 31 THR n 1 32 TYR n 1 33 VAL n 1 34 ASN n 1 35 ALA n 1 36 GLU n 1 37 GLU n 1 38 LEU n 1 39 THR n 1 40 GLY n 1 41 THR n 1 42 HIS n 1 43 LYS n 1 44 TYR n 1 45 SER n 1 46 LEU n 1 47 GLN n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 TYR n 1 52 LEU n 1 53 LEU n 1 54 PRO n 1 55 LYS n 1 56 ASP n 1 57 SER n 1 58 PHE n 1 59 ILE n 1 60 ARG n 1 61 CYS n 1 62 HIS n 1 63 ARG n 1 64 SER n 1 65 PHE n 1 66 ILE n 1 67 VAL n 1 68 ASN n 1 69 VAL n 1 70 ASN n 1 71 HIS n 1 72 ILE n 1 73 LYS n 1 74 ALA n 1 75 ILE n 1 76 TYR n 1 77 PRO n 1 78 ASP n 1 79 THR n 1 80 HIS n 1 81 SER n 1 82 THR n 1 83 PHE n 1 84 LEU n 1 85 LEU n 1 86 SER n 1 87 MSE n 1 88 ASP n 1 89 ASN n 1 90 GLY n 1 91 GLU n 1 92 ARG n 1 93 VAL n 1 94 PRO n 1 95 VAL n 1 96 SER n 1 97 GLN n 1 98 SER n 1 99 TYR n 1 100 ALA n 1 101 SER n 1 102 TYR n 1 103 PHE n 1 104 ARG n 1 105 LYS n 1 106 LEU n 1 107 LEU n 1 108 GLY n 1 109 PHE n 1 110 GLY n 1 111 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BCE_1947 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 10987' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222523 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET15b modified' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q73A38_BACC1 _struct_ref.pdbx_db_accession Q73A38 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKSVVTLKTTDGWIPVPFSKVMYLEAKDKKTYVNAEELTGTHKYSLQEFEYLLPKDSFIRCHRSFIVNVNHIKAIYPDTH STFLLSMDNGERVPVSQSYASYFRKLLGF ; _struct_ref.pdbx_align_begin 106 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D6W A 1 ? 109 ? Q73A38 106 ? 214 ? 106 214 2 1 3D6W B 1 ? 109 ? Q73A38 106 ? 214 ? 106 214 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D6W GLY A 110 ? UNP Q73A38 ? ? 'EXPRESSION TAG' 215 1 1 3D6W SER A 111 ? UNP Q73A38 ? ? 'EXPRESSION TAG' 216 2 2 3D6W GLY B 110 ? UNP Q73A38 ? ? 'EXPRESSION TAG' 215 3 2 3D6W SER B 111 ? UNP Q73A38 ? ? 'EXPRESSION TAG' 216 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3D6W _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details ;0.4 M magnesium chloride, 0.1 M HEPES buffer. Full length protein consisting of 214 original residues was used for crystallization. The obtained crystals contain only C-terminal domain of the protein, probably, due to proteolysis of the protein in crystallization conditions. , pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3D6W _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 48.0 _reflns.number_obs 12166 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_netI_over_sigmaI 13.600 _reflns.pdbx_chi_squared 1.804 _reflns.pdbx_redundancy 27.800 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 12166 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 65.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.44 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.913 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.934 _reflns_shell.pdbx_redundancy 26.70 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 583 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D6W _refine.ls_d_res_high 2.400 _refine.ls_d_res_low 48.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.930 _refine.ls_number_reflns_obs 12141 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_R_work 0.182 _refine.ls_R_factor_R_free 0.209 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 581 _refine.B_iso_mean 50.238 _refine.aniso_B[1][1] 0.430 _refine.aniso_B[2][2] 0.430 _refine.aniso_B[3][3] -0.870 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.pdbx_overall_ESU_R 0.300 _refine.pdbx_overall_ESU_R_Free 0.205 _refine.overall_SU_ML 0.167 _refine.overall_SU_B 14.485 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0.00 _refine.ls_number_reflns_all 12141 _refine.ls_R_factor_all 0.184 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1778 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 1866 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 48.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1833 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1263 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2474 1.664 1.957 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3075 0.984 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 216 7.001 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 80 35.831 23.250 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 320 20.146 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 15.267 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 272 0.099 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1976 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 390 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 305 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1200 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 833 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 987 0.095 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 60 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 10 0.080 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 44 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1314 1.348 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 436 0.189 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1774 1.701 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 851 2.222 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 700 3.263 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.890 _refine_ls_shell.number_reflns_R_work 837 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.255 _refine_ls_shell.R_factor_R_free 0.304 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 877 _refine_ls_shell.number_reflns_obs 877 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D6W _struct.title 'LytTr DNA-binding domain of putative methyl-accepting/DNA response regulator from Bacillus cereus.' _struct.pdbx_descriptor 'Methyl-accepting/DNA response regulator' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D6W _struct_keywords.text ;structural genomics, APC7590, LytTr DNA-binding domain, methyl-accepting/DNA response regulator, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 45 ? LEU A 53 ? SER A 150 LEU A 158 1 ? 9 HELX_P HELX_P2 2 TYR A 99 ? GLY A 108 ? TYR A 204 GLY A 213 1 ? 10 HELX_P HELX_P3 3 SER B 45 ? LEU B 53 ? SER B 150 LEU B 158 1 ? 9 HELX_P HELX_P4 4 TYR B 99 ? GLY B 108 ? TYR B 204 GLY B 213 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A VAL 21 C ? ? ? 1_555 A MSE 22 N ? ? A VAL 126 A MSE 127 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 22 C ? ? ? 1_555 A TYR 23 N ? ? A MSE 127 A TYR 128 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? A SER 86 C ? ? ? 1_555 A MSE 87 N ? ? A SER 191 A MSE 192 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? A MSE 87 C ? ? ? 1_555 A ASP 88 N ? ? A MSE 192 A ASP 193 1_555 ? ? ? ? ? ? ? 1.338 ? covale5 covale ? ? B VAL 21 C ? ? ? 1_555 B MSE 22 N ? ? B VAL 126 B MSE 127 1_555 ? ? ? ? ? ? ? 1.339 ? covale6 covale ? ? B MSE 22 C ? ? ? 1_555 B TYR 23 N ? ? B MSE 127 B TYR 128 1_555 ? ? ? ? ? ? ? 1.323 ? covale7 covale ? ? B SER 86 C ? ? ? 1_555 B MSE 87 N ? ? B SER 191 B MSE 192 1_555 ? ? ? ? ? ? ? 1.321 ? covale8 covale ? ? B MSE 87 C ? ? ? 1_555 B ASP 88 N ? ? B MSE 192 B ASP 193 1_555 ? ? ? ? ? ? ? 1.330 ? metalc1 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 302 B HOH 23 1_555 ? ? ? ? ? ? ? 2.467 ? metalc2 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 302 B HOH 73 1_555 ? ? ? ? ? ? ? 2.315 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? D ? 2 ? E ? 5 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 4 ? LYS A 8 ? VAL A 109 LYS A 113 A 2 TRP A 13 ? PRO A 17 ? TRP A 118 PRO A 122 B 1 THR A 39 ? HIS A 42 ? THR A 144 HIS A 147 B 2 LYS A 30 ? ALA A 35 ? LYS A 135 ALA A 140 B 3 VAL A 21 ? LYS A 27 ? VAL A 126 LYS A 132 B 4 PHE A 65 ? ASN A 68 ? PHE A 170 ASN A 173 B 5 PHE A 58 ? HIS A 62 ? PHE A 163 HIS A 167 C 1 ILE A 72 ? TYR A 76 ? ILE A 177 TYR A 181 C 2 PHE A 83 ? MSE A 87 ? PHE A 188 MSE A 192 C 3 ARG A 92 ? VAL A 95 ? ARG A 197 VAL A 200 D 1 VAL B 4 ? LYS B 8 ? VAL B 109 LYS B 113 D 2 TRP B 13 ? PRO B 17 ? TRP B 118 PRO B 122 E 1 THR B 39 ? HIS B 42 ? THR B 144 HIS B 147 E 2 LYS B 30 ? ALA B 35 ? LYS B 135 ALA B 140 E 3 VAL B 21 ? LYS B 27 ? VAL B 126 LYS B 132 E 4 PHE B 65 ? ASN B 68 ? PHE B 170 ASN B 173 E 5 PHE B 58 ? HIS B 62 ? PHE B 163 HIS B 167 F 1 ILE B 72 ? THR B 79 ? ILE B 177 THR B 184 F 2 THR B 82 ? MSE B 87 ? THR B 187 MSE B 192 F 3 ARG B 92 ? VAL B 95 ? ARG B 197 VAL B 200 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 5 ? N VAL A 110 O VAL A 16 ? O VAL A 121 B 1 2 O GLY A 40 ? O GLY A 145 N VAL A 33 ? N VAL A 138 B 2 3 O TYR A 32 ? O TYR A 137 N GLU A 25 ? N GLU A 130 B 3 4 N LEU A 24 ? N LEU A 129 O ILE A 66 ? O ILE A 171 B 4 5 O VAL A 67 ? O VAL A 172 N ILE A 59 ? N ILE A 164 C 1 2 N LYS A 73 ? N LYS A 178 O SER A 86 ? O SER A 191 C 2 3 N LEU A 85 ? N LEU A 190 O VAL A 93 ? O VAL A 198 D 1 2 N LEU B 7 ? N LEU B 112 O ILE B 14 ? O ILE B 119 E 1 2 O GLY B 40 ? O GLY B 145 N VAL B 33 ? N VAL B 138 E 2 3 O TYR B 32 ? O TYR B 137 N GLU B 25 ? N GLU B 130 E 3 4 N LEU B 24 ? N LEU B 129 O ILE B 66 ? O ILE B 171 E 4 5 O VAL B 67 ? O VAL B 172 N ILE B 59 ? N ILE B 164 F 1 2 N LYS B 73 ? N LYS B 178 O SER B 86 ? O SER B 191 F 2 3 N LEU B 85 ? N LEU B 190 O VAL B 93 ? O VAL B 198 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 301' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG B 302' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 303' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE FMT A 304' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FMT B 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ASN A 70 ? ASN A 175 . ? 1_555 ? 2 AC1 2 ILE A 72 ? ILE A 177 . ? 1_555 ? 3 AC2 2 ILE B 72 ? ILE B 177 . ? 1_555 ? 4 AC2 2 ASP B 88 ? ASP B 193 . ? 1_555 ? 5 AC3 4 LYS A 2 ? LYS A 107 . ? 1_555 ? 6 AC3 4 SER A 3 ? SER A 108 . ? 1_555 ? 7 AC3 4 LYS B 55 ? LYS B 160 . ? 2_565 ? 8 AC3 4 ASP B 56 ? ASP B 161 . ? 2_565 ? 9 AC4 5 ARG A 63 ? ARG A 168 . ? 1_555 ? 10 AC4 5 THR A 79 ? THR A 184 . ? 8_555 ? 11 AC4 5 SER A 96 ? SER A 201 . ? 1_555 ? 12 AC4 5 SER A 98 ? SER A 203 . ? 1_555 ? 13 AC4 5 TYR A 99 ? TYR A 204 . ? 1_555 ? 14 AC5 4 TYR A 76 ? TYR A 181 . ? 5_556 ? 15 AC5 4 THR B 9 ? THR B 114 . ? 1_555 ? 16 AC5 4 ASP B 11 ? ASP B 116 . ? 1_555 ? 17 AC5 4 GLY B 12 ? GLY B 117 . ? 1_555 ? # _atom_sites.entry_id 3D6W _atom_sites.fract_transf_matrix[1][1] 0.011263 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011263 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013436 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 106 106 GLY GLY A . n A 1 2 LYS 2 107 107 LYS LYS A . n A 1 3 SER 3 108 108 SER SER A . n A 1 4 VAL 4 109 109 VAL VAL A . n A 1 5 VAL 5 110 110 VAL VAL A . n A 1 6 THR 6 111 111 THR THR A . n A 1 7 LEU 7 112 112 LEU LEU A . n A 1 8 LYS 8 113 113 LYS LYS A . n A 1 9 THR 9 114 114 THR THR A . n A 1 10 THR 10 115 115 THR THR A . n A 1 11 ASP 11 116 116 ASP ASP A . n A 1 12 GLY 12 117 117 GLY GLY A . n A 1 13 TRP 13 118 118 TRP TRP A . n A 1 14 ILE 14 119 119 ILE ILE A . n A 1 15 PRO 15 120 120 PRO PRO A . n A 1 16 VAL 16 121 121 VAL VAL A . n A 1 17 PRO 17 122 122 PRO PRO A . n A 1 18 PHE 18 123 123 PHE PHE A . n A 1 19 SER 19 124 124 SER SER A . n A 1 20 LYS 20 125 125 LYS LYS A . n A 1 21 VAL 21 126 126 VAL VAL A . n A 1 22 MSE 22 127 127 MSE MSE A . n A 1 23 TYR 23 128 128 TYR TYR A . n A 1 24 LEU 24 129 129 LEU LEU A . n A 1 25 GLU 25 130 130 GLU GLU A . n A 1 26 ALA 26 131 131 ALA ALA A . n A 1 27 LYS 27 132 132 LYS LYS A . n A 1 28 ASP 28 133 133 ASP ASP A . n A 1 29 LYS 29 134 134 LYS LYS A . n A 1 30 LYS 30 135 135 LYS LYS A . n A 1 31 THR 31 136 136 THR THR A . n A 1 32 TYR 32 137 137 TYR TYR A . n A 1 33 VAL 33 138 138 VAL VAL A . n A 1 34 ASN 34 139 139 ASN ASN A . n A 1 35 ALA 35 140 140 ALA ALA A . n A 1 36 GLU 36 141 141 GLU GLU A . n A 1 37 GLU 37 142 142 GLU GLU A . n A 1 38 LEU 38 143 143 LEU LEU A . n A 1 39 THR 39 144 144 THR THR A . n A 1 40 GLY 40 145 145 GLY GLY A . n A 1 41 THR 41 146 146 THR THR A . n A 1 42 HIS 42 147 147 HIS HIS A . n A 1 43 LYS 43 148 148 LYS LYS A . n A 1 44 TYR 44 149 149 TYR TYR A . n A 1 45 SER 45 150 150 SER SER A . n A 1 46 LEU 46 151 151 LEU LEU A . n A 1 47 GLN 47 152 152 GLN GLN A . n A 1 48 GLU 48 153 153 GLU GLU A . n A 1 49 PHE 49 154 154 PHE PHE A . n A 1 50 GLU 50 155 155 GLU GLU A . n A 1 51 TYR 51 156 156 TYR TYR A . n A 1 52 LEU 52 157 157 LEU LEU A . n A 1 53 LEU 53 158 158 LEU LEU A . n A 1 54 PRO 54 159 159 PRO PRO A . n A 1 55 LYS 55 160 160 LYS LYS A . n A 1 56 ASP 56 161 161 ASP ASP A . n A 1 57 SER 57 162 162 SER SER A . n A 1 58 PHE 58 163 163 PHE PHE A . n A 1 59 ILE 59 164 164 ILE ILE A . n A 1 60 ARG 60 165 165 ARG ARG A . n A 1 61 CYS 61 166 166 CYS CYS A . n A 1 62 HIS 62 167 167 HIS HIS A . n A 1 63 ARG 63 168 168 ARG ARG A . n A 1 64 SER 64 169 169 SER SER A . n A 1 65 PHE 65 170 170 PHE PHE A . n A 1 66 ILE 66 171 171 ILE ILE A . n A 1 67 VAL 67 172 172 VAL VAL A . n A 1 68 ASN 68 173 173 ASN ASN A . n A 1 69 VAL 69 174 174 VAL VAL A . n A 1 70 ASN 70 175 175 ASN ASN A . n A 1 71 HIS 71 176 176 HIS HIS A . n A 1 72 ILE 72 177 177 ILE ILE A . n A 1 73 LYS 73 178 178 LYS LYS A . n A 1 74 ALA 74 179 179 ALA ALA A . n A 1 75 ILE 75 180 180 ILE ILE A . n A 1 76 TYR 76 181 181 TYR TYR A . n A 1 77 PRO 77 182 182 PRO PRO A . n A 1 78 ASP 78 183 183 ASP ASP A . n A 1 79 THR 79 184 184 THR THR A . n A 1 80 HIS 80 185 185 HIS HIS A . n A 1 81 SER 81 186 186 SER SER A . n A 1 82 THR 82 187 187 THR THR A . n A 1 83 PHE 83 188 188 PHE PHE A . n A 1 84 LEU 84 189 189 LEU LEU A . n A 1 85 LEU 85 190 190 LEU LEU A . n A 1 86 SER 86 191 191 SER SER A . n A 1 87 MSE 87 192 192 MSE MSE A . n A 1 88 ASP 88 193 193 ASP ASP A . n A 1 89 ASN 89 194 194 ASN ASN A . n A 1 90 GLY 90 195 195 GLY GLY A . n A 1 91 GLU 91 196 196 GLU GLU A . n A 1 92 ARG 92 197 197 ARG ARG A . n A 1 93 VAL 93 198 198 VAL VAL A . n A 1 94 PRO 94 199 199 PRO PRO A . n A 1 95 VAL 95 200 200 VAL VAL A . n A 1 96 SER 96 201 201 SER SER A . n A 1 97 GLN 97 202 202 GLN GLN A . n A 1 98 SER 98 203 203 SER SER A . n A 1 99 TYR 99 204 204 TYR TYR A . n A 1 100 ALA 100 205 205 ALA ALA A . n A 1 101 SER 101 206 206 SER SER A . n A 1 102 TYR 102 207 207 TYR TYR A . n A 1 103 PHE 103 208 208 PHE PHE A . n A 1 104 ARG 104 209 209 ARG ARG A . n A 1 105 LYS 105 210 210 LYS LYS A . n A 1 106 LEU 106 211 211 LEU LEU A . n A 1 107 LEU 107 212 212 LEU LEU A . n A 1 108 GLY 108 213 213 GLY GLY A . n A 1 109 PHE 109 214 214 PHE PHE A . n A 1 110 GLY 110 215 ? ? ? A . n A 1 111 SER 111 216 ? ? ? A . n B 1 1 GLY 1 106 ? ? ? B . n B 1 2 LYS 2 107 107 LYS LYS B . n B 1 3 SER 3 108 108 SER SER B . n B 1 4 VAL 4 109 109 VAL VAL B . n B 1 5 VAL 5 110 110 VAL VAL B . n B 1 6 THR 6 111 111 THR THR B . n B 1 7 LEU 7 112 112 LEU LEU B . n B 1 8 LYS 8 113 113 LYS LYS B . n B 1 9 THR 9 114 114 THR THR B . n B 1 10 THR 10 115 115 THR THR B . n B 1 11 ASP 11 116 116 ASP ASP B . n B 1 12 GLY 12 117 117 GLY GLY B . n B 1 13 TRP 13 118 118 TRP TRP B . n B 1 14 ILE 14 119 119 ILE ILE B . n B 1 15 PRO 15 120 120 PRO PRO B . n B 1 16 VAL 16 121 121 VAL VAL B . n B 1 17 PRO 17 122 122 PRO PRO B . n B 1 18 PHE 18 123 123 PHE PHE B . n B 1 19 SER 19 124 124 SER SER B . n B 1 20 LYS 20 125 125 LYS LYS B . n B 1 21 VAL 21 126 126 VAL VAL B . n B 1 22 MSE 22 127 127 MSE MSE B . n B 1 23 TYR 23 128 128 TYR TYR B . n B 1 24 LEU 24 129 129 LEU LEU B . n B 1 25 GLU 25 130 130 GLU GLU B . n B 1 26 ALA 26 131 131 ALA ALA B . n B 1 27 LYS 27 132 132 LYS LYS B . n B 1 28 ASP 28 133 133 ASP ASP B . n B 1 29 LYS 29 134 134 LYS LYS B . n B 1 30 LYS 30 135 135 LYS LYS B . n B 1 31 THR 31 136 136 THR THR B . n B 1 32 TYR 32 137 137 TYR TYR B . n B 1 33 VAL 33 138 138 VAL VAL B . n B 1 34 ASN 34 139 139 ASN ASN B . n B 1 35 ALA 35 140 140 ALA ALA B . n B 1 36 GLU 36 141 141 GLU GLU B . n B 1 37 GLU 37 142 142 GLU GLU B . n B 1 38 LEU 38 143 143 LEU LEU B . n B 1 39 THR 39 144 144 THR THR B . n B 1 40 GLY 40 145 145 GLY GLY B . n B 1 41 THR 41 146 146 THR THR B . n B 1 42 HIS 42 147 147 HIS HIS B . n B 1 43 LYS 43 148 148 LYS LYS B . n B 1 44 TYR 44 149 149 TYR TYR B . n B 1 45 SER 45 150 150 SER SER B . n B 1 46 LEU 46 151 151 LEU LEU B . n B 1 47 GLN 47 152 152 GLN GLN B . n B 1 48 GLU 48 153 153 GLU GLU B . n B 1 49 PHE 49 154 154 PHE PHE B . n B 1 50 GLU 50 155 155 GLU GLU B . n B 1 51 TYR 51 156 156 TYR TYR B . n B 1 52 LEU 52 157 157 LEU LEU B . n B 1 53 LEU 53 158 158 LEU LEU B . n B 1 54 PRO 54 159 159 PRO PRO B . n B 1 55 LYS 55 160 160 LYS LYS B . n B 1 56 ASP 56 161 161 ASP ASP B . n B 1 57 SER 57 162 162 SER SER B . n B 1 58 PHE 58 163 163 PHE PHE B . n B 1 59 ILE 59 164 164 ILE ILE B . n B 1 60 ARG 60 165 165 ARG ARG B . n B 1 61 CYS 61 166 166 CYS CYS B . n B 1 62 HIS 62 167 167 HIS HIS B . n B 1 63 ARG 63 168 168 ARG ARG B . n B 1 64 SER 64 169 169 SER SER B . n B 1 65 PHE 65 170 170 PHE PHE B . n B 1 66 ILE 66 171 171 ILE ILE B . n B 1 67 VAL 67 172 172 VAL VAL B . n B 1 68 ASN 68 173 173 ASN ASN B . n B 1 69 VAL 69 174 174 VAL VAL B . n B 1 70 ASN 70 175 175 ASN ASN B . n B 1 71 HIS 71 176 176 HIS HIS B . n B 1 72 ILE 72 177 177 ILE ILE B . n B 1 73 LYS 73 178 178 LYS LYS B . n B 1 74 ALA 74 179 179 ALA ALA B . n B 1 75 ILE 75 180 180 ILE ILE B . n B 1 76 TYR 76 181 181 TYR TYR B . n B 1 77 PRO 77 182 182 PRO PRO B . n B 1 78 ASP 78 183 183 ASP ASP B . n B 1 79 THR 79 184 184 THR THR B . n B 1 80 HIS 80 185 185 HIS HIS B . n B 1 81 SER 81 186 186 SER SER B . n B 1 82 THR 82 187 187 THR THR B . n B 1 83 PHE 83 188 188 PHE PHE B . n B 1 84 LEU 84 189 189 LEU LEU B . n B 1 85 LEU 85 190 190 LEU LEU B . n B 1 86 SER 86 191 191 SER SER B . n B 1 87 MSE 87 192 192 MSE MSE B . n B 1 88 ASP 88 193 193 ASP ASP B . n B 1 89 ASN 89 194 194 ASN ASN B . n B 1 90 GLY 90 195 195 GLY GLY B . n B 1 91 GLU 91 196 196 GLU GLU B . n B 1 92 ARG 92 197 197 ARG ARG B . n B 1 93 VAL 93 198 198 VAL VAL B . n B 1 94 PRO 94 199 199 PRO PRO B . n B 1 95 VAL 95 200 200 VAL VAL B . n B 1 96 SER 96 201 201 SER SER B . n B 1 97 GLN 97 202 202 GLN GLN B . n B 1 98 SER 98 203 203 SER SER B . n B 1 99 TYR 99 204 204 TYR TYR B . n B 1 100 ALA 100 205 205 ALA ALA B . n B 1 101 SER 101 206 206 SER SER B . n B 1 102 TYR 102 207 207 TYR TYR B . n B 1 103 PHE 103 208 208 PHE PHE B . n B 1 104 ARG 104 209 209 ARG ARG B . n B 1 105 LYS 105 210 210 LYS LYS B . n B 1 106 LEU 106 211 211 LEU LEU B . n B 1 107 LEU 107 212 212 LEU LEU B . n B 1 108 GLY 108 213 213 GLY GLY B . n B 1 109 PHE 109 214 214 PHE PHE B . n B 1 110 GLY 110 215 215 GLY GLY B . n B 1 111 SER 111 216 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 301 301 MG MG A . D 3 EDO 1 303 303 EDO EDO A . E 4 FMT 1 304 304 FMT FMT A . F 2 MG 1 302 302 MG MG B . G 4 FMT 1 305 305 FMT FMT B . H 5 HOH 1 1 1 HOH HOH A . H 5 HOH 2 3 3 HOH HOH A . H 5 HOH 3 6 6 HOH HOH A . H 5 HOH 4 7 7 HOH HOH A . H 5 HOH 5 8 8 HOH HOH A . H 5 HOH 6 9 9 HOH HOH A . H 5 HOH 7 10 10 HOH HOH A . H 5 HOH 8 11 11 HOH HOH A . H 5 HOH 9 14 14 HOH HOH A . H 5 HOH 10 16 16 HOH HOH A . H 5 HOH 11 17 17 HOH HOH A . H 5 HOH 12 19 19 HOH HOH A . H 5 HOH 13 20 20 HOH HOH A . H 5 HOH 14 21 21 HOH HOH A . H 5 HOH 15 22 22 HOH HOH A . H 5 HOH 16 24 24 HOH HOH A . H 5 HOH 17 25 25 HOH HOH A . H 5 HOH 18 27 27 HOH HOH A . H 5 HOH 19 30 30 HOH HOH A . H 5 HOH 20 31 31 HOH HOH A . H 5 HOH 21 38 38 HOH HOH A . H 5 HOH 22 39 39 HOH HOH A . H 5 HOH 23 40 40 HOH HOH A . H 5 HOH 24 42 42 HOH HOH A . H 5 HOH 25 44 44 HOH HOH A . H 5 HOH 26 45 45 HOH HOH A . H 5 HOH 27 46 46 HOH HOH A . H 5 HOH 28 47 47 HOH HOH A . H 5 HOH 29 49 49 HOH HOH A . H 5 HOH 30 50 50 HOH HOH A . H 5 HOH 31 51 51 HOH HOH A . H 5 HOH 32 57 57 HOH HOH A . H 5 HOH 33 59 59 HOH HOH A . H 5 HOH 34 60 60 HOH HOH A . H 5 HOH 35 62 62 HOH HOH A . H 5 HOH 36 64 64 HOH HOH A . H 5 HOH 37 65 65 HOH HOH A . H 5 HOH 38 69 69 HOH HOH A . H 5 HOH 39 70 70 HOH HOH A . H 5 HOH 40 71 71 HOH HOH A . H 5 HOH 41 74 74 HOH HOH A . H 5 HOH 42 75 75 HOH HOH A . I 5 HOH 1 2 2 HOH HOH B . I 5 HOH 2 4 4 HOH HOH B . I 5 HOH 3 5 5 HOH HOH B . I 5 HOH 4 12 12 HOH HOH B . I 5 HOH 5 13 13 HOH HOH B . I 5 HOH 6 15 15 HOH HOH B . I 5 HOH 7 18 18 HOH HOH B . I 5 HOH 8 23 23 HOH HOH B . I 5 HOH 9 26 26 HOH HOH B . I 5 HOH 10 28 28 HOH HOH B . I 5 HOH 11 29 29 HOH HOH B . I 5 HOH 12 32 32 HOH HOH B . I 5 HOH 13 33 33 HOH HOH B . I 5 HOH 14 34 34 HOH HOH B . I 5 HOH 15 35 35 HOH HOH B . I 5 HOH 16 36 36 HOH HOH B . I 5 HOH 17 37 37 HOH HOH B . I 5 HOH 18 41 41 HOH HOH B . I 5 HOH 19 43 43 HOH HOH B . I 5 HOH 20 48 48 HOH HOH B . I 5 HOH 21 52 52 HOH HOH B . I 5 HOH 22 53 53 HOH HOH B . I 5 HOH 23 54 54 HOH HOH B . I 5 HOH 24 55 55 HOH HOH B . I 5 HOH 25 56 56 HOH HOH B . I 5 HOH 26 58 58 HOH HOH B . I 5 HOH 27 61 61 HOH HOH B . I 5 HOH 28 63 63 HOH HOH B . I 5 HOH 29 66 66 HOH HOH B . I 5 HOH 30 67 67 HOH HOH B . I 5 HOH 31 68 68 HOH HOH B . I 5 HOH 32 72 72 HOH HOH B . I 5 HOH 33 73 73 HOH HOH B . I 5 HOH 34 76 76 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 22 A MSE 127 ? MET SELENOMETHIONINE 2 A MSE 87 A MSE 192 ? MET SELENOMETHIONINE 3 B MSE 22 B MSE 127 ? MET SELENOMETHIONINE 4 B MSE 87 B MSE 192 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,D,E,H 1 3,4 B,F,G,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6670 ? 1 MORE -47 ? 1 'SSA (A^2)' 21910 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 88.7840000000 0.0000000000 0.0000000000 -1.0000000000 74.4250000000 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 88.7840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 5_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 74.4250000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 39 ? H HOH . 2 1 A HOH 65 ? H HOH . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id I _pdbx_struct_conn_angle.ptnr1_label_comp_id HOH _pdbx_struct_conn_angle.ptnr1_label_seq_id . _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id B _pdbx_struct_conn_angle.ptnr1_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr1_auth_seq_id 23 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id F _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id B _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 302 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id I _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id B _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 73 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 87.6 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -14.6783 44.5263 14.3315 -0.0865 -0.1965 -0.1053 0.0046 0.0749 -0.0063 15.7621 13.6460 43.8264 1.1594 7.9706 9.9259 0.1389 -0.6346 0.4957 0.7893 0.4210 -0.4319 0.1812 0.6196 2.0992 'X-RAY DIFFRACTION' 2 ? refined -16.4008 42.2288 22.5964 -0.1472 -0.1266 -0.1981 -0.0318 -0.1183 -0.1536 4.2930 3.3296 2.3032 3.7807 -3.1444 -2.7692 -0.2260 0.6874 -0.4614 0.4132 0.0459 -0.2058 0.0980 -0.0861 -0.0234 'X-RAY DIFFRACTION' 3 ? refined -15.8405 30.6132 18.1934 -0.1491 -0.1320 -0.0988 -0.0956 -0.1229 -0.1565 15.7069 7.2365 8.7913 -4.0127 10.9089 -5.5338 0.3034 0.2628 -0.5662 -0.6172 0.9499 0.5129 0.2298 0.2494 0.4769 'X-RAY DIFFRACTION' 4 ? refined -13.0781 30.0226 7.0219 -0.2126 0.2355 -0.3675 0.0984 -0.1394 -0.2388 22.8156 7.4321 12.7027 -13.0108 1.2133 -1.0896 0.9300 -0.8523 -0.0777 1.0625 -0.0630 0.3462 -1.6943 -1.4829 -0.8274 'X-RAY DIFFRACTION' 5 ? refined -16.0665 37.5648 15.1209 -0.2097 -0.1014 -0.2010 0.0693 -0.1046 -0.0762 1.2705 1.9687 4.1772 -1.5711 -1.2046 1.2096 0.2927 -0.2180 -0.0746 0.6610 -0.0600 0.1888 -0.3682 -0.1818 -0.0643 'X-RAY DIFFRACTION' 6 ? refined -3.7131 34.2973 17.7763 -0.2691 -0.0514 -0.1510 -0.0036 -0.0667 -0.0779 10.5603 3.5927 4.3541 5.7638 1.1269 -0.7604 0.2009 -0.1077 -0.0931 0.2005 -0.0694 -0.2041 0.1908 -0.5215 -0.1822 'X-RAY DIFFRACTION' 7 ? refined -7.6042 30.5690 24.9630 -0.1660 -0.0843 -0.2045 -0.0387 -0.0963 -0.1301 0.8680 2.3754 0.0631 -1.4359 0.2340 -0.3871 0.1501 -0.4210 0.2709 -0.1393 -0.0508 0.0117 0.0730 -0.2680 0.0423 'X-RAY DIFFRACTION' 8 ? refined -15.8432 24.3921 25.0233 -0.3111 -0.2045 -0.2165 0.0537 -0.1254 -0.1189 0.0591 4.3039 2.6724 0.0573 0.3870 1.1429 0.1759 -0.1178 -0.0581 0.0263 0.0379 -0.0075 0.2469 -0.1205 0.1449 'X-RAY DIFFRACTION' 9 ? refined -17.5278 18.8542 25.4342 -0.1162 -0.0659 -0.0576 0.0819 -0.2516 -0.2238 3.2780 0.5404 0.0114 1.3309 -0.1930 -0.0783 -0.1950 0.4227 -0.2277 0.3144 0.9932 -0.5522 -0.0272 -0.9926 0.1255 'X-RAY DIFFRACTION' 10 ? refined -10.6918 20.2836 26.1361 -0.2970 -0.1842 -0.1142 0.0159 -0.1244 -0.1200 2.1925 1.9358 0.6108 -2.0602 -1.1572 1.0874 0.2699 -0.0646 -0.2054 0.0076 -0.4883 -0.0066 -0.1005 0.0718 0.1729 'X-RAY DIFFRACTION' 11 ? refined 12.8202 24.0885 36.3520 -0.1641 0.0097 -0.2942 -0.1162 -0.0698 0.1136 16.3192 36.6079 12.4283 -0.7857 3.5518 0.2667 0.4916 -0.1431 -0.3485 -0.8014 0.5778 1.9973 -1.1023 -0.9433 -0.3491 'X-RAY DIFFRACTION' 12 ? refined 16.9862 23.0144 37.6109 -0.2496 -0.0809 -0.2982 0.0114 -0.0337 0.0640 1.3556 4.5444 6.8826 1.4529 -0.5610 -5.0585 0.2506 -0.7149 0.4643 -0.2239 0.0764 -0.2653 0.1595 -0.4561 0.7802 'X-RAY DIFFRACTION' 13 ? refined 15.9441 25.1444 25.1954 -0.1347 0.0054 -0.1794 0.1153 -0.0264 -0.0285 1.2827 21.9277 8.6123 -5.1718 -2.5027 12.0929 -0.1207 -0.1862 0.3069 0.1589 0.3640 -0.5902 -0.8132 -0.6493 1.0814 'X-RAY DIFFRACTION' 14 ? refined 16.1626 21.0061 27.2484 -0.1756 -0.1216 -0.2480 0.0911 -0.0952 0.0016 7.2701 6.4680 1.8476 1.5328 -2.2933 -0.0201 0.1505 -0.4689 0.3184 -0.1253 -0.2488 -0.0275 0.1187 -0.1487 0.2927 'X-RAY DIFFRACTION' 15 ? refined 14.4265 19.9923 31.7092 -0.2799 -0.2207 -0.2080 0.0673 -0.0606 0.0660 5.4828 7.8823 10.3625 -6.3122 2.6355 -0.6683 -0.0007 -0.6341 0.6348 -0.3585 -0.5780 0.2754 0.3713 -0.3101 0.2891 'X-RAY DIFFRACTION' 16 ? refined 3.9943 25.2391 27.8816 -0.2205 -0.1419 -0.1706 0.0488 -0.0484 -0.0049 0.4292 4.6185 0.0282 1.4079 -0.1101 -0.3610 0.6346 -0.8028 0.1681 -0.0737 -0.0507 0.2533 -0.0451 0.0504 -0.3116 'X-RAY DIFFRACTION' 17 ? refined 9.9809 30.6179 21.6367 -0.1976 -0.1254 -0.2730 0.0244 -0.0286 -0.0580 2.3123 5.3430 2.0808 -0.0938 -0.1563 -0.4875 0.3049 -0.4252 0.1202 0.4561 0.1225 0.1584 -0.1040 -0.0183 0.1316 'X-RAY DIFFRACTION' 18 ? refined 17.1895 34.5720 9.3621 0.0693 0.1880 -0.2293 0.1021 0.1236 -0.0426 0.3220 7.4286 10.1557 -1.0494 -1.0092 -2.0047 0.5300 -0.2538 -0.2762 0.8279 0.2435 -0.6588 -1.1619 0.9666 0.3558 'X-RAY DIFFRACTION' 19 ? refined 20.0002 32.9466 15.9462 0.1090 0.1910 0.0617 0.1662 0.0797 -0.0352 12.4879 1.5116 0.8862 4.3447 -3.3267 -1.1574 0.2195 -0.6410 0.4215 -0.5146 -1.2764 -0.0623 0.2629 0.1226 0.5096 'X-RAY DIFFRACTION' 20 ? refined 10.0665 33.7931 12.6740 -0.1340 0.0183 -0.2902 0.0055 -0.0084 -0.0205 5.2157 18.4242 4.3108 -4.3907 1.7217 -0.4094 0.2593 -0.1014 -0.1578 0.6788 0.2377 -0.1604 -1.6968 0.0569 -0.0240 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 118 ? 106 A 1 A 13 'X-RAY DIFFRACTION' ? 2 2 A A 126 ? 119 A 14 A 21 'X-RAY DIFFRACTION' ? 3 3 A A 131 ? 127 A 22 A 26 'X-RAY DIFFRACTION' ? 4 4 A A 136 ? 132 A 27 A 31 'X-RAY DIFFRACTION' ? 5 5 A A 149 ? 137 A 32 A 44 'X-RAY DIFFRACTION' ? 6 6 A A 157 ? 150 A 45 A 52 'X-RAY DIFFRACTION' ? 7 7 A A 167 ? 158 A 53 A 62 'X-RAY DIFFRACTION' ? 8 8 A A 183 ? 168 A 63 A 78 'X-RAY DIFFRACTION' ? 9 9 A A 194 ? 184 A 79 A 89 'X-RAY DIFFRACTION' ? 10 10 A A 214 ? 195 A 90 A 109 'X-RAY DIFFRACTION' ? 11 11 B B 114 ? 107 B 2 B 9 'X-RAY DIFFRACTION' ? 12 12 B B 123 ? 115 B 10 B 18 'X-RAY DIFFRACTION' ? 13 13 B B 133 ? 124 B 19 B 28 'X-RAY DIFFRACTION' ? 14 14 B B 142 ? 134 B 29 B 37 'X-RAY DIFFRACTION' ? 15 15 B B 148 ? 143 B 38 B 43 'X-RAY DIFFRACTION' ? 16 16 B B 158 ? 149 B 44 B 53 'X-RAY DIFFRACTION' ? 17 17 B B 176 ? 159 B 54 B 71 'X-RAY DIFFRACTION' ? 18 18 B B 187 ? 177 B 72 B 82 'X-RAY DIFFRACTION' ? 19 19 B B 195 ? 188 B 83 B 90 'X-RAY DIFFRACTION' ? 20 20 B B 215 ? 196 B 91 B 110 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SOLVE . ? ? ? ? phasing ? ? ? 10 RESOLVE . ? ? ? ? phasing ? ? ? 11 HKL-3000 . ? ? ? ? phasing ? ? ? 12 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ B LYS 125 ? ? OE1 B GLU 142 ? ? 2.16 2 1 CG2 A THR 146 ? ? O A HOH 25 ? ? 2.17 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 108 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -130.96 _pdbx_validate_torsion.psi -38.48 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 215 ? A GLY 110 2 1 Y 1 A SER 216 ? A SER 111 3 1 Y 1 B GLY 106 ? B GLY 1 4 1 Y 1 B SER 216 ? B SER 111 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 1,2-ETHANEDIOL EDO 4 'FORMIC ACID' FMT 5 water HOH #