data_3DB5 # _entry.id 3DB5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DB5 RCSB RCSB047818 WWPDB D_1000047818 # _pdbx_database_status.entry_id 3DB5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Amaya, M.F.' 1 'Zeng, H.' 2 'Loppnau, P.' 3 'Bountra, C.' 4 'Weigelt, J.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.M.' 7 'Bochkarev, A.' 8 'Min, J.' 9 'Plotnikov, A.N.' 10 'Wu, H.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title 'The crystal structure of methyltransferase domain of human PR domain-containing protein 4.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zeng, H.' 1 primary 'Amaya, M.F.' 2 primary 'Loppnau, P.' 3 primary 'Bochkarev, A.' 4 primary 'Min, J.' 5 primary 'Plotnikov, A.N.' 6 primary 'Wu, H.' 7 # _cell.length_a 107.294 _cell.length_b 107.294 _cell.length_c 133.642 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3DB5 _cell.pdbx_unique_axis ? _cell.Z_PDB 32 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.entry_id 3DB5 _symmetry.Int_Tables_number 97 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PR domain zinc finger protein 4' 17525.346 2 ? ? 'Residues 390-540' ? 2 water nat water 18.015 139 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PR domain-containing protein 4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;EHGPVTFVPDTPIESRARLSLPKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHS(MSE)EVAEWTDKAVNHIWK IYHNGVLEFCIITTDENECNW(MSE)(MSE)FVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIG VPE ; _entity_poly.pdbx_seq_one_letter_code_can ;EHGPVTFVPDTPIESRARLSLPKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHN GVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIGVPE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 HIS n 1 3 GLY n 1 4 PRO n 1 5 VAL n 1 6 THR n 1 7 PHE n 1 8 VAL n 1 9 PRO n 1 10 ASP n 1 11 THR n 1 12 PRO n 1 13 ILE n 1 14 GLU n 1 15 SER n 1 16 ARG n 1 17 ALA n 1 18 ARG n 1 19 LEU n 1 20 SER n 1 21 LEU n 1 22 PRO n 1 23 LYS n 1 24 GLN n 1 25 LEU n 1 26 VAL n 1 27 LEU n 1 28 ARG n 1 29 GLN n 1 30 SER n 1 31 ILE n 1 32 VAL n 1 33 GLY n 1 34 ALA n 1 35 GLU n 1 36 VAL n 1 37 GLY n 1 38 VAL n 1 39 TRP n 1 40 THR n 1 41 GLY n 1 42 GLU n 1 43 THR n 1 44 ILE n 1 45 PRO n 1 46 VAL n 1 47 ARG n 1 48 THR n 1 49 CYS n 1 50 PHE n 1 51 GLY n 1 52 PRO n 1 53 LEU n 1 54 ILE n 1 55 GLY n 1 56 GLN n 1 57 GLN n 1 58 SER n 1 59 HIS n 1 60 SER n 1 61 MSE n 1 62 GLU n 1 63 VAL n 1 64 ALA n 1 65 GLU n 1 66 TRP n 1 67 THR n 1 68 ASP n 1 69 LYS n 1 70 ALA n 1 71 VAL n 1 72 ASN n 1 73 HIS n 1 74 ILE n 1 75 TRP n 1 76 LYS n 1 77 ILE n 1 78 TYR n 1 79 HIS n 1 80 ASN n 1 81 GLY n 1 82 VAL n 1 83 LEU n 1 84 GLU n 1 85 PHE n 1 86 CYS n 1 87 ILE n 1 88 ILE n 1 89 THR n 1 90 THR n 1 91 ASP n 1 92 GLU n 1 93 ASN n 1 94 GLU n 1 95 CYS n 1 96 ASN n 1 97 TRP n 1 98 MSE n 1 99 MSE n 1 100 PHE n 1 101 VAL n 1 102 ARG n 1 103 LYS n 1 104 ALA n 1 105 ARG n 1 106 ASN n 1 107 ARG n 1 108 GLU n 1 109 GLU n 1 110 GLN n 1 111 ASN n 1 112 LEU n 1 113 VAL n 1 114 ALA n 1 115 TYR n 1 116 PRO n 1 117 HIS n 1 118 ASP n 1 119 GLY n 1 120 LYS n 1 121 ILE n 1 122 PHE n 1 123 PHE n 1 124 CYS n 1 125 THR n 1 126 SER n 1 127 GLN n 1 128 ASP n 1 129 ILE n 1 130 PRO n 1 131 PRO n 1 132 GLU n 1 133 ASN n 1 134 GLU n 1 135 LEU n 1 136 LEU n 1 137 PHE n 1 138 TYR n 1 139 TYR n 1 140 SER n 1 141 ARG n 1 142 ASP n 1 143 TYR n 1 144 ALA n 1 145 GLN n 1 146 GLN n 1 147 ILE n 1 148 GLY n 1 149 VAL n 1 150 PRO n 1 151 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PRDM4, PFM1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRDM4_HUMAN _struct_ref.pdbx_db_accession Q9UKN5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EHGPVTFVPDTPIESRARLSLPKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHN GVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIGVPE ; _struct_ref.pdbx_align_begin 390 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DB5 A 1 ? 151 ? Q9UKN5 390 ? 540 ? 1 151 2 1 3DB5 B 1 ? 151 ? Q9UKN5 390 ? 540 ? 1 151 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3DB5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;1.5 microliter protein solution, 1.5 microliter reservoir solution containing 23% PEG 3350, 0.2 M Ammonium acetate, 0.1 M Bis-Tris pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-05-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E DW' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54178 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3DB5 _reflns.d_resolution_high 2.150 _reflns.d_resolution_low 30.000 _reflns.number_obs 21499 _reflns.pdbx_Rmerge_I_obs 0.093 _reflns.pdbx_netI_over_sigmaI 13.100 _reflns.pdbx_chi_squared 1.948 _reflns.pdbx_redundancy 27.200 _reflns.percent_possible_obs 100.0 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.15 2.23 ? ? ? 0.799 ? ? 1.261 18.20 ? 2095 100.00 1 1 2.23 2.32 ? ? ? 0.639 ? ? 1.349 26.50 ? 2109 100.00 2 1 2.32 2.42 ? ? ? 0.515 ? ? 1.335 28.70 ? 2121 100.00 3 1 2.42 2.55 ? ? ? 0.376 ? ? 1.371 28.80 ? 2130 100.00 4 1 2.55 2.71 ? ? ? 0.252 ? ? 1.523 28.80 ? 2122 100.00 5 1 2.71 2.92 ? ? ? 0.174 ? ? 1.681 28.80 ? 2134 100.00 6 1 2.92 3.21 ? ? ? 0.119 ? ? 1.999 28.80 ? 2127 100.00 7 1 3.21 3.67 ? ? ? 0.080 ? ? 2.569 28.60 ? 2163 100.00 8 1 3.67 4.63 ? ? ? 0.058 ? ? 3.052 28.10 ? 2196 100.00 9 1 4.63 30.00 ? ? ? 0.048 ? ? 2.999 26.80 ? 2302 100.00 10 1 # _refine.entry_id 3DB5 _refine.ls_d_res_high 2.150 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.840 _refine.ls_number_reflns_obs 21490 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.226 _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.298 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1101 _refine.B_iso_mean 24.916 _refine.aniso_B[1][1] -0.270 _refine.aniso_B[2][2] -0.270 _refine.aniso_B[3][3] 0.550 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.867 _refine.pdbx_overall_ESU_R 0.212 _refine.pdbx_overall_ESU_R_Free 0.214 _refine.overall_SU_ML 0.143 _refine.overall_SU_B 10.423 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2062 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 2201 _refine_hist.d_res_high 2.150 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2117 0.022 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2882 1.926 1.937 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 252 10.324 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 104 37.353 24.038 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 329 17.269 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 20.654 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 316 0.150 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1633 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 822 0.226 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1419 0.310 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 136 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 67 0.255 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 17 0.157 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1326 1.240 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2094 2.007 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 915 3.007 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 788 4.499 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.207 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.220 _refine_ls_shell.number_reflns_R_work 1449 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.248 _refine_ls_shell.R_factor_R_free 0.356 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1531 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DB5 _struct.title 'Crystal structure of methyltransferase domain of human PR domain-containing protein 4' _struct.pdbx_descriptor 'PR domain zinc finger protein 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DB5 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Methyltransferase, PRDM4, Structural Genomics, Structural Genomics Consortium, SGC, DNA-binding, Metal-binding, Nucleus, Transcription, Transcription regulation, Zinc-finger, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS EXPERIMENTALLY UNKNOWN.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? SER A 20 ? SER A 15 SER A 20 1 ? 6 HELX_P HELX_P2 2 ASN A 96 ? VAL A 101 ? ASN A 96 VAL A 101 5 ? 6 HELX_P HELX_P3 3 SER B 15 ? SER B 20 ? SER B 15 SER B 20 1 ? 6 HELX_P HELX_P4 4 ASN B 96 ? VAL B 101 ? ASN B 96 VAL B 101 5 ? 6 HELX_P HELX_P5 5 SER B 140 ? GLY B 148 ? SER B 140 GLY B 148 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 49 SG ? ? ? 1_555 B CYS 124 SG ? ? B CYS 49 B CYS 124 1_555 ? ? ? ? ? ? ? 2.064 ? covale1 covale ? ? A TRP 97 C ? ? ? 1_555 A MSE 98 N ? ? A TRP 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.317 ? covale2 covale ? ? A MSE 98 C ? ? ? 1_555 A MSE 99 N ? ? A MSE 98 A MSE 99 1_555 ? ? ? ? ? ? ? 1.353 ? covale3 covale ? ? A MSE 99 C ? ? ? 1_555 A PHE 100 N ? ? A MSE 99 A PHE 100 1_555 ? ? ? ? ? ? ? 1.348 ? covale4 covale ? ? B SER 60 C ? ? ? 1_555 B MSE 61 N ? ? B SER 60 B MSE 61 1_555 ? ? ? ? ? ? ? 1.339 ? covale5 covale ? ? B TRP 97 C ? ? ? 1_555 B MSE 98 N ? ? B TRP 97 B MSE 98 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale ? ? B MSE 98 C ? ? ? 1_555 B MSE 99 N ? ? B MSE 98 B MSE 99 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? B MSE 99 C ? ? ? 1_555 B PHE 100 N ? ? B MSE 99 B PHE 100 1_555 ? ? ? ? ? ? ? 1.335 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 51 A . ? GLY 51 A PRO 52 A ? PRO 52 A 1 3.63 2 GLY 51 B . ? GLY 51 B PRO 52 B ? PRO 52 B 1 1.49 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? D ? 2 ? E ? 5 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? parallel E 4 5 ? parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 25 ? GLN A 29 ? LEU A 25 GLN A 29 A 2 VAL A 36 ? THR A 40 ? VAL A 36 THR A 40 B 1 CYS A 49 ? PHE A 50 ? CYS A 49 PHE A 50 B 2 LYS A 120 ? THR A 125 ? LYS A 120 THR A 125 B 3 LEU A 112 ? HIS A 117 ? LEU A 112 HIS A 117 B 4 LEU A 136 ? TYR A 139 ? LEU A 136 TYR A 139 B 5 ARG A 102 ? LYS A 103 ? ARG A 102 LYS A 103 C 1 GLN A 56 ? SER A 58 ? GLN A 56 SER A 58 C 2 VAL A 82 ? ILE A 88 ? VAL A 82 ILE A 88 C 3 ILE A 74 ? HIS A 79 ? ILE A 74 HIS A 79 D 1 LEU B 25 ? GLN B 29 ? LEU B 25 GLN B 29 D 2 VAL B 36 ? THR B 40 ? VAL B 36 THR B 40 E 1 CYS B 49 ? PHE B 50 ? CYS B 49 PHE B 50 E 2 LYS B 120 ? THR B 125 ? LYS B 120 THR B 125 E 3 LEU B 112 ? HIS B 117 ? LEU B 112 HIS B 117 E 4 LEU B 136 ? TYR B 139 ? LEU B 136 TYR B 139 E 5 ARG B 102 ? LYS B 103 ? ARG B 102 LYS B 103 F 1 GLN B 56 ? SER B 58 ? GLN B 56 SER B 58 F 2 VAL B 82 ? ILE B 88 ? VAL B 82 ILE B 88 F 3 ILE B 74 ? HIS B 79 ? ILE B 74 HIS B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 26 ? N VAL A 26 O TRP A 39 ? O TRP A 39 B 1 2 N PHE A 50 ? N PHE A 50 O PHE A 123 ? O PHE A 123 B 2 3 O LYS A 120 ? O LYS A 120 N HIS A 117 ? N HIS A 117 B 3 4 N ALA A 114 ? N ALA A 114 O TYR A 138 ? O TYR A 138 B 4 5 O PHE A 137 ? O PHE A 137 N ARG A 102 ? N ARG A 102 C 1 2 N SER A 58 ? N SER A 58 O CYS A 86 ? O CYS A 86 C 2 3 O PHE A 85 ? O PHE A 85 N ILE A 77 ? N ILE A 77 D 1 2 N VAL B 26 ? N VAL B 26 O TRP B 39 ? O TRP B 39 E 1 2 N PHE B 50 ? N PHE B 50 O PHE B 123 ? O PHE B 123 E 2 3 O PHE B 122 ? O PHE B 122 N TYR B 115 ? N TYR B 115 E 3 4 N ALA B 114 ? N ALA B 114 O TYR B 138 ? O TYR B 138 E 4 5 O PHE B 137 ? O PHE B 137 N ARG B 102 ? N ARG B 102 F 1 2 N GLN B 56 ? N GLN B 56 O ILE B 88 ? O ILE B 88 F 2 3 O GLU B 84 ? O GLU B 84 N ILE B 77 ? N ILE B 77 # _atom_sites.entry_id 3DB5 _atom_sites.fract_transf_matrix[1][1] 0.009320 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009320 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007483 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 VAL 32 32 ? ? ? A . n A 1 33 GLY 33 33 ? ? ? A . n A 1 34 ALA 34 34 ? ? ? A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 HIS 59 59 59 HIS HIS A . n A 1 60 SER 60 60 ? ? ? A . n A 1 61 MSE 61 61 ? ? ? A . n A 1 62 GLU 62 62 ? ? ? A . n A 1 63 VAL 63 63 ? ? ? A . n A 1 64 ALA 64 64 ? ? ? A . n A 1 65 GLU 65 65 ? ? ? A . n A 1 66 TRP 66 66 ? ? ? A . n A 1 67 THR 67 67 ? ? ? A . n A 1 68 ASP 68 68 ? ? ? A . n A 1 69 LYS 69 69 ? ? ? A . n A 1 70 ALA 70 70 ? ? ? A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 TRP 75 75 75 TRP TRP A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 MSE 98 98 98 MSE MSE A . n A 1 99 MSE 99 99 99 MSE MSE A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 CYS 124 124 124 CYS CYS A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 ASP 142 142 ? ? ? A . n A 1 143 TYR 143 143 ? ? ? A . n A 1 144 ALA 144 144 ? ? ? A . n A 1 145 GLN 145 145 ? ? ? A . n A 1 146 GLN 146 146 ? ? ? A . n A 1 147 ILE 147 147 ? ? ? A . n A 1 148 GLY 148 148 ? ? ? A . n A 1 149 VAL 149 149 ? ? ? A . n A 1 150 PRO 150 150 ? ? ? A . n A 1 151 GLU 151 151 ? ? ? A . n B 1 1 GLU 1 1 ? ? ? B . n B 1 2 HIS 2 2 2 HIS HIS B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 THR 6 6 6 THR THR B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 ASP 10 10 10 ASP ASP B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 ARG 18 18 18 ARG ARG B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 GLN 24 24 24 GLN GLN B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 GLN 29 29 29 GLN GLN B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 VAL 32 32 ? ? ? B . n B 1 33 GLY 33 33 ? ? ? B . n B 1 34 ALA 34 34 34 ALA ALA B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 TRP 39 39 39 TRP TRP B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 GLY 41 41 41 GLY GLY B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 PRO 45 45 45 PRO PRO B . n B 1 46 VAL 46 46 46 VAL VAL B . n B 1 47 ARG 47 47 47 ARG ARG B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 CYS 49 49 49 CYS CYS B . n B 1 50 PHE 50 50 50 PHE PHE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 PRO 52 52 52 PRO PRO B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 GLN 56 56 56 GLN GLN B . n B 1 57 GLN 57 57 57 GLN GLN B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 HIS 59 59 59 HIS HIS B . n B 1 60 SER 60 60 60 SER SER B . n B 1 61 MSE 61 61 61 MSE MSE B . n B 1 62 GLU 62 62 ? ? ? B . n B 1 63 VAL 63 63 ? ? ? B . n B 1 64 ALA 64 64 ? ? ? B . n B 1 65 GLU 65 65 ? ? ? B . n B 1 66 TRP 66 66 ? ? ? B . n B 1 67 THR 67 67 ? ? ? B . n B 1 68 ASP 68 68 ? ? ? B . n B 1 69 LYS 69 69 ? ? ? B . n B 1 70 ALA 70 70 ? ? ? B . n B 1 71 VAL 71 71 ? ? ? B . n B 1 72 ASN 72 72 ? ? ? B . n B 1 73 HIS 73 73 73 HIS HIS B . n B 1 74 ILE 74 74 74 ILE ILE B . n B 1 75 TRP 75 75 75 TRP TRP B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 ILE 77 77 77 ILE ILE B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 HIS 79 79 79 HIS HIS B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 GLY 81 81 81 GLY GLY B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 PHE 85 85 85 PHE PHE B . n B 1 86 CYS 86 86 86 CYS CYS B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 ILE 88 88 88 ILE ILE B . n B 1 89 THR 89 89 89 THR THR B . n B 1 90 THR 90 90 90 THR THR B . n B 1 91 ASP 91 91 91 ASP ASP B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 ASN 93 93 93 ASN ASN B . n B 1 94 GLU 94 94 94 GLU GLU B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 ASN 96 96 96 ASN ASN B . n B 1 97 TRP 97 97 97 TRP TRP B . n B 1 98 MSE 98 98 98 MSE MSE B . n B 1 99 MSE 99 99 99 MSE MSE B . n B 1 100 PHE 100 100 100 PHE PHE B . n B 1 101 VAL 101 101 101 VAL VAL B . n B 1 102 ARG 102 102 102 ARG ARG B . n B 1 103 LYS 103 103 103 LYS LYS B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 ASN 106 106 106 ASN ASN B . n B 1 107 ARG 107 107 107 ARG ARG B . n B 1 108 GLU 108 108 108 GLU GLU B . n B 1 109 GLU 109 109 109 GLU GLU B . n B 1 110 GLN 110 110 110 GLN GLN B . n B 1 111 ASN 111 111 111 ASN ASN B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 VAL 113 113 113 VAL VAL B . n B 1 114 ALA 114 114 114 ALA ALA B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 PRO 116 116 116 PRO PRO B . n B 1 117 HIS 117 117 117 HIS HIS B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 GLY 119 119 119 GLY GLY B . n B 1 120 LYS 120 120 120 LYS LYS B . n B 1 121 ILE 121 121 121 ILE ILE B . n B 1 122 PHE 122 122 122 PHE PHE B . n B 1 123 PHE 123 123 123 PHE PHE B . n B 1 124 CYS 124 124 124 CYS CYS B . n B 1 125 THR 125 125 125 THR THR B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 GLN 127 127 127 GLN GLN B . n B 1 128 ASP 128 128 128 ASP ASP B . n B 1 129 ILE 129 129 129 ILE ILE B . n B 1 130 PRO 130 130 130 PRO PRO B . n B 1 131 PRO 131 131 131 PRO PRO B . n B 1 132 GLU 132 132 132 GLU GLU B . n B 1 133 ASN 133 133 133 ASN ASN B . n B 1 134 GLU 134 134 134 GLU GLU B . n B 1 135 LEU 135 135 135 LEU LEU B . n B 1 136 LEU 136 136 136 LEU LEU B . n B 1 137 PHE 137 137 137 PHE PHE B . n B 1 138 TYR 138 138 138 TYR TYR B . n B 1 139 TYR 139 139 139 TYR TYR B . n B 1 140 SER 140 140 140 SER SER B . n B 1 141 ARG 141 141 141 ARG ARG B . n B 1 142 ASP 142 142 142 ASP ASP B . n B 1 143 TYR 143 143 143 TYR TYR B . n B 1 144 ALA 144 144 144 ALA ALA B . n B 1 145 GLN 145 145 145 GLN GLN B . n B 1 146 GLN 146 146 146 GLN GLN B . n B 1 147 ILE 147 147 147 ILE ILE B . n B 1 148 GLY 148 148 148 GLY GLY B . n B 1 149 VAL 149 149 ? ? ? B . n B 1 150 PRO 150 150 ? ? ? B . n B 1 151 GLU 151 151 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 152 2 HOH HOH A . C 2 HOH 2 153 5 HOH HOH A . C 2 HOH 3 154 6 HOH HOH A . C 2 HOH 4 155 9 HOH HOH A . C 2 HOH 5 156 10 HOH HOH A . C 2 HOH 6 157 11 HOH HOH A . C 2 HOH 7 158 12 HOH HOH A . C 2 HOH 8 159 14 HOH HOH A . C 2 HOH 9 160 15 HOH HOH A . C 2 HOH 10 161 18 HOH HOH A . C 2 HOH 11 162 19 HOH HOH A . C 2 HOH 12 163 20 HOH HOH A . C 2 HOH 13 164 21 HOH HOH A . C 2 HOH 14 165 22 HOH HOH A . C 2 HOH 15 166 23 HOH HOH A . C 2 HOH 16 167 26 HOH HOH A . C 2 HOH 17 168 30 HOH HOH A . C 2 HOH 18 169 31 HOH HOH A . C 2 HOH 19 170 32 HOH HOH A . C 2 HOH 20 171 35 HOH HOH A . C 2 HOH 21 172 36 HOH HOH A . C 2 HOH 22 173 37 HOH HOH A . C 2 HOH 23 174 38 HOH HOH A . C 2 HOH 24 175 40 HOH HOH A . C 2 HOH 25 176 44 HOH HOH A . C 2 HOH 26 177 45 HOH HOH A . C 2 HOH 27 178 48 HOH HOH A . C 2 HOH 28 179 52 HOH HOH A . C 2 HOH 29 180 53 HOH HOH A . C 2 HOH 30 181 55 HOH HOH A . C 2 HOH 31 182 56 HOH HOH A . C 2 HOH 32 183 57 HOH HOH A . C 2 HOH 33 184 60 HOH HOH A . C 2 HOH 34 185 61 HOH HOH A . C 2 HOH 35 186 62 HOH HOH A . C 2 HOH 36 187 67 HOH HOH A . C 2 HOH 37 188 68 HOH HOH A . C 2 HOH 38 189 69 HOH HOH A . C 2 HOH 39 190 71 HOH HOH A . C 2 HOH 40 191 76 HOH HOH A . C 2 HOH 41 192 81 HOH HOH A . C 2 HOH 42 193 82 HOH HOH A . C 2 HOH 43 194 83 HOH HOH A . C 2 HOH 44 195 85 HOH HOH A . C 2 HOH 45 196 86 HOH HOH A . C 2 HOH 46 197 90 HOH HOH A . C 2 HOH 47 198 96 HOH HOH A . C 2 HOH 48 199 98 HOH HOH A . C 2 HOH 49 200 101 HOH HOH A . C 2 HOH 50 201 105 HOH HOH A . C 2 HOH 51 202 106 HOH HOH A . C 2 HOH 52 203 109 HOH HOH A . C 2 HOH 53 204 111 HOH HOH A . C 2 HOH 54 205 113 HOH HOH A . C 2 HOH 55 206 114 HOH HOH A . C 2 HOH 56 207 116 HOH HOH A . C 2 HOH 57 208 132 HOH HOH A . C 2 HOH 58 209 136 HOH HOH A . C 2 HOH 59 210 138 HOH HOH A . C 2 HOH 60 211 142 HOH HOH A . C 2 HOH 61 212 144 HOH HOH A . C 2 HOH 62 213 155 HOH HOH A . C 2 HOH 63 214 156 HOH HOH A . C 2 HOH 64 215 158 HOH HOH A . C 2 HOH 65 216 161 HOH HOH A . C 2 HOH 66 217 164 HOH HOH A . C 2 HOH 67 218 165 HOH HOH A . C 2 HOH 68 219 166 HOH HOH A . C 2 HOH 69 220 170 HOH HOH A . C 2 HOH 70 221 171 HOH HOH A . C 2 HOH 71 222 172 HOH HOH A . C 2 HOH 72 223 173 HOH HOH A . C 2 HOH 73 224 174 HOH HOH A . C 2 HOH 74 225 175 HOH HOH A . C 2 HOH 75 226 176 HOH HOH A . C 2 HOH 76 227 182 HOH HOH A . C 2 HOH 77 228 185 HOH HOH A . C 2 HOH 78 229 188 HOH HOH A . C 2 HOH 79 230 192 HOH HOH A . C 2 HOH 80 231 198 HOH HOH A . C 2 HOH 81 232 206 HOH HOH A . C 2 HOH 82 233 70 HOH HOH A . C 2 HOH 83 234 135 HOH HOH A . D 2 HOH 1 152 1 HOH HOH B . D 2 HOH 2 153 3 HOH HOH B . D 2 HOH 3 154 4 HOH HOH B . D 2 HOH 4 155 13 HOH HOH B . D 2 HOH 5 156 16 HOH HOH B . D 2 HOH 6 157 17 HOH HOH B . D 2 HOH 7 158 24 HOH HOH B . D 2 HOH 8 159 25 HOH HOH B . D 2 HOH 9 160 27 HOH HOH B . D 2 HOH 10 161 28 HOH HOH B . D 2 HOH 11 162 33 HOH HOH B . D 2 HOH 12 163 34 HOH HOH B . D 2 HOH 13 164 41 HOH HOH B . D 2 HOH 14 165 42 HOH HOH B . D 2 HOH 15 166 43 HOH HOH B . D 2 HOH 16 167 46 HOH HOH B . D 2 HOH 17 168 47 HOH HOH B . D 2 HOH 18 169 49 HOH HOH B . D 2 HOH 19 170 50 HOH HOH B . D 2 HOH 20 171 51 HOH HOH B . D 2 HOH 21 172 54 HOH HOH B . D 2 HOH 22 173 59 HOH HOH B . D 2 HOH 23 174 63 HOH HOH B . D 2 HOH 24 175 64 HOH HOH B . D 2 HOH 25 176 66 HOH HOH B . D 2 HOH 26 178 72 HOH HOH B . D 2 HOH 27 179 75 HOH HOH B . D 2 HOH 28 180 77 HOH HOH B . D 2 HOH 29 181 78 HOH HOH B . D 2 HOH 30 182 80 HOH HOH B . D 2 HOH 31 183 84 HOH HOH B . D 2 HOH 32 184 88 HOH HOH B . D 2 HOH 33 185 89 HOH HOH B . D 2 HOH 34 186 92 HOH HOH B . D 2 HOH 35 187 94 HOH HOH B . D 2 HOH 36 188 99 HOH HOH B . D 2 HOH 37 189 100 HOH HOH B . D 2 HOH 38 190 103 HOH HOH B . D 2 HOH 39 191 104 HOH HOH B . D 2 HOH 40 192 107 HOH HOH B . D 2 HOH 41 193 108 HOH HOH B . D 2 HOH 42 194 117 HOH HOH B . D 2 HOH 43 195 119 HOH HOH B . D 2 HOH 44 196 121 HOH HOH B . D 2 HOH 45 197 124 HOH HOH B . D 2 HOH 46 198 128 HOH HOH B . D 2 HOH 47 199 129 HOH HOH B . D 2 HOH 48 200 131 HOH HOH B . D 2 HOH 49 201 134 HOH HOH B . D 2 HOH 50 203 154 HOH HOH B . D 2 HOH 51 204 159 HOH HOH B . D 2 HOH 52 205 160 HOH HOH B . D 2 HOH 53 206 186 HOH HOH B . D 2 HOH 54 207 189 HOH HOH B . D 2 HOH 55 208 201 HOH HOH B . D 2 HOH 56 209 207 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 98 A MSE 98 ? MET SELENOMETHIONINE 2 A MSE 99 A MSE 99 ? MET SELENOMETHIONINE 3 B MSE 61 B MSE 61 ? MET SELENOMETHIONINE 4 B MSE 98 B MSE 98 ? MET SELENOMETHIONINE 5 B MSE 99 B MSE 99 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 172 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 29.7520 46.8490 21.5253 0.1008 0.0344 0.1020 -0.0116 0.0579 -0.0291 1.0206 3.4778 2.2892 0.0991 -0.2426 2.7584 -0.0777 -0.0189 0.0966 0.0562 -0.0679 0.1249 0.2027 -0.0629 0.0392 'X-RAY DIFFRACTION' 2 ? refined 27.5215 39.4688 11.5205 0.0963 0.0549 0.1023 0.0093 0.0527 -0.1002 3.5445 2.0095 2.5224 -0.0547 0.1102 0.3487 -0.0319 -0.0672 0.0991 0.3088 -0.1486 0.0884 -0.1251 0.0105 -0.1373 'X-RAY DIFFRACTION' 3 ? refined 33.3687 3.1436 25.2345 0.1877 0.0168 0.1686 0.0193 0.1796 0.0349 0.7662 3.7268 1.6231 1.6180 -1.0108 -1.8349 -0.1047 -0.2759 0.3806 -0.0342 -0.2557 -0.3894 -0.3530 0.2703 0.1385 'X-RAY DIFFRACTION' 4 ? refined 33.7324 9.7897 15.4612 0.2138 -0.0150 0.0949 0.0223 0.1847 0.0200 1.9700 3.9626 3.8548 0.8262 -0.3913 -0.8707 -0.1818 -0.1393 0.3211 0.0934 -0.1328 -0.2527 -0.5997 0.3959 0.0998 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 77 ? 4 A 4 A 77 'X-RAY DIFFRACTION' ? 2 2 A A 141 ? 78 A 78 A 141 'X-RAY DIFFRACTION' ? 3 3 B B 89 ? 2 B 2 B 89 'X-RAY DIFFRACTION' ? 4 4 B B 148 ? 90 B 90 B 148 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 SHELXD . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A GLU 109 ? ? CG A GLU 109 ? ? 1.374 1.517 -0.143 0.019 N 2 1 C B HIS 2 ? ? O B HIS 2 ? ? 1.348 1.229 0.119 0.019 N 3 1 C B ILE 31 ? ? O B ILE 31 ? ? 1.411 1.229 0.182 0.019 N 4 1 CB B GLU 109 ? ? CG B GLU 109 ? ? 1.400 1.517 -0.117 0.019 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 107 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 107 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 107 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 84.58 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -26.42 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 46 ? ? -44.18 154.16 2 1 ASN A 72 ? ? 75.93 -10.92 3 1 ARG B 47 ? ? -102.86 49.86 4 1 ASN B 106 ? ? 175.35 167.98 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 106 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ARG _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 107 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -116.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 13 ? CG1 ? A ILE 13 CG1 2 1 Y 1 A ILE 13 ? CG2 ? A ILE 13 CG2 3 1 Y 1 A ILE 13 ? CD1 ? A ILE 13 CD1 4 1 Y 1 A LYS 23 ? CG ? A LYS 23 CG 5 1 Y 1 A LYS 23 ? CD ? A LYS 23 CD 6 1 Y 1 A LYS 23 ? CE ? A LYS 23 CE 7 1 Y 1 A LYS 23 ? NZ ? A LYS 23 NZ 8 1 Y 1 A HIS 59 ? CG ? A HIS 59 CG 9 1 Y 1 A HIS 59 ? ND1 ? A HIS 59 ND1 10 1 Y 1 A HIS 59 ? CD2 ? A HIS 59 CD2 11 1 Y 1 A HIS 59 ? CE1 ? A HIS 59 CE1 12 1 Y 1 A HIS 59 ? NE2 ? A HIS 59 NE2 13 1 Y 1 A VAL 71 ? CG1 ? A VAL 71 CG1 14 1 Y 1 A VAL 71 ? CG2 ? A VAL 71 CG2 15 1 Y 1 A LYS 120 ? CE ? A LYS 120 CE 16 1 Y 1 A LYS 120 ? NZ ? A LYS 120 NZ 17 1 Y 1 A ARG 141 ? CG ? A ARG 141 CG 18 1 Y 1 A ARG 141 ? CD ? A ARG 141 CD 19 1 Y 1 A ARG 141 ? NE ? A ARG 141 NE 20 1 Y 1 A ARG 141 ? CZ ? A ARG 141 CZ 21 1 Y 1 A ARG 141 ? NH1 ? A ARG 141 NH1 22 1 Y 1 A ARG 141 ? NH2 ? A ARG 141 NH2 23 1 Y 1 B HIS 2 ? CG ? B HIS 2 CG 24 1 Y 1 B HIS 2 ? ND1 ? B HIS 2 ND1 25 1 Y 1 B HIS 2 ? CD2 ? B HIS 2 CD2 26 1 Y 1 B HIS 2 ? CE1 ? B HIS 2 CE1 27 1 Y 1 B HIS 2 ? NE2 ? B HIS 2 NE2 28 1 Y 1 B LYS 23 ? CD ? B LYS 23 CD 29 1 Y 1 B LYS 23 ? CE ? B LYS 23 CE 30 1 Y 1 B LYS 23 ? NZ ? B LYS 23 NZ 31 1 Y 1 B MSE 61 ? CG ? B MSE 61 CG 32 1 Y 1 B MSE 61 ? SE ? B MSE 61 SE 33 1 Y 1 B MSE 61 ? CE ? B MSE 61 CE 34 1 Y 1 B LYS 76 ? CE ? B LYS 76 CE 35 1 Y 1 B LYS 76 ? NZ ? B LYS 76 NZ 36 1 Y 1 B ARG 105 ? CG ? B ARG 105 CG 37 1 Y 1 B ARG 105 ? CD ? B ARG 105 CD 38 1 Y 1 B ARG 105 ? NE ? B ARG 105 NE 39 1 Y 1 B ARG 105 ? CZ ? B ARG 105 CZ 40 1 Y 1 B ARG 105 ? NH1 ? B ARG 105 NH1 41 1 Y 1 B ARG 105 ? NH2 ? B ARG 105 NH2 42 1 Y 1 B ASN 106 ? CG ? B ASN 106 CG 43 1 Y 1 B ASN 106 ? OD1 ? B ASN 106 OD1 44 1 Y 1 B ASN 106 ? ND2 ? B ASN 106 ND2 45 1 Y 1 B ARG 141 ? CD ? B ARG 141 CD 46 1 Y 1 B ARG 141 ? NE ? B ARG 141 NE 47 1 Y 1 B ARG 141 ? CZ ? B ARG 141 CZ 48 1 Y 1 B ARG 141 ? NH1 ? B ARG 141 NH1 49 1 Y 1 B ARG 141 ? NH2 ? B ARG 141 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 1 ? A GLU 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A VAL 32 ? A VAL 32 5 1 Y 1 A GLY 33 ? A GLY 33 6 1 Y 1 A ALA 34 ? A ALA 34 7 1 Y 1 A SER 60 ? A SER 60 8 1 Y 1 A MSE 61 ? A MSE 61 9 1 Y 1 A GLU 62 ? A GLU 62 10 1 Y 1 A VAL 63 ? A VAL 63 11 1 Y 1 A ALA 64 ? A ALA 64 12 1 Y 1 A GLU 65 ? A GLU 65 13 1 Y 1 A TRP 66 ? A TRP 66 14 1 Y 1 A THR 67 ? A THR 67 15 1 Y 1 A ASP 68 ? A ASP 68 16 1 Y 1 A LYS 69 ? A LYS 69 17 1 Y 1 A ALA 70 ? A ALA 70 18 1 Y 1 A ASP 142 ? A ASP 142 19 1 Y 1 A TYR 143 ? A TYR 143 20 1 Y 1 A ALA 144 ? A ALA 144 21 1 Y 1 A GLN 145 ? A GLN 145 22 1 Y 1 A GLN 146 ? A GLN 146 23 1 Y 1 A ILE 147 ? A ILE 147 24 1 Y 1 A GLY 148 ? A GLY 148 25 1 Y 1 A VAL 149 ? A VAL 149 26 1 Y 1 A PRO 150 ? A PRO 150 27 1 Y 1 A GLU 151 ? A GLU 151 28 1 Y 1 B GLU 1 ? B GLU 1 29 1 Y 1 B VAL 32 ? B VAL 32 30 1 Y 1 B GLY 33 ? B GLY 33 31 1 Y 1 B GLU 62 ? B GLU 62 32 1 Y 1 B VAL 63 ? B VAL 63 33 1 Y 1 B ALA 64 ? B ALA 64 34 1 Y 1 B GLU 65 ? B GLU 65 35 1 Y 1 B TRP 66 ? B TRP 66 36 1 Y 1 B THR 67 ? B THR 67 37 1 Y 1 B ASP 68 ? B ASP 68 38 1 Y 1 B LYS 69 ? B LYS 69 39 1 Y 1 B ALA 70 ? B ALA 70 40 1 Y 1 B VAL 71 ? B VAL 71 41 1 Y 1 B ASN 72 ? B ASN 72 42 1 Y 1 B VAL 149 ? B VAL 149 43 1 Y 1 B PRO 150 ? B PRO 150 44 1 Y 1 B GLU 151 ? B GLU 151 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #