data_3DCF # _entry.id 3DCF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DCF pdb_00003dcf 10.2210/pdb3dcf/pdb RCSB RCSB047863 ? ? WWPDB D_1000047863 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390257 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DCF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of transcriptional regulator of the TetR/AcrR family (YP_290855.1) from THERMOBIFIDA FUSCA YX-ER1 at 2.50 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3DCF _cell.length_a 47.870 _cell.length_b 67.620 _cell.length_c 72.980 _cell.angle_alpha 90.000 _cell.angle_beta 104.230 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DCF _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'transcriptional regulator of the TetR/AcrR family' 25093.590 2 ? ? ? ? 2 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)GQRSDSDHV(MSE)AEATTDKRQGHTRGRTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYF KSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILRNLDANTLFYNERGLLSPERERE(MSE)RKRE REYTEI(MSE)QRLYAEGVATGELLDVDPTVATATLLGAAIWTYRWYDPEGRLSADEVVEQITRLLLNGYRRPA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMGQRSDSDHVMAEATTDKRQGHTRGRTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLF AIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILRNLDANTLFYNERGLLSPEREREMRKREREYTEIMQRLYA EGVATGELLDVDPTVATATLLGAAIWTYRWYDPEGRLSADEVVEQITRLLLNGYRRPA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 390257 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLY n 1 4 GLN n 1 5 ARG n 1 6 SER n 1 7 ASP n 1 8 SER n 1 9 ASP n 1 10 HIS n 1 11 VAL n 1 12 MSE n 1 13 ALA n 1 14 GLU n 1 15 ALA n 1 16 THR n 1 17 THR n 1 18 ASP n 1 19 LYS n 1 20 ARG n 1 21 GLN n 1 22 GLY n 1 23 HIS n 1 24 THR n 1 25 ARG n 1 26 GLY n 1 27 ARG n 1 28 THR n 1 29 GLY n 1 30 ASN n 1 31 ASP n 1 32 ARG n 1 33 ARG n 1 34 THR n 1 35 GLN n 1 36 ILE n 1 37 ILE n 1 38 LYS n 1 39 VAL n 1 40 ALA n 1 41 THR n 1 42 GLU n 1 43 LEU n 1 44 PHE n 1 45 ARG n 1 46 GLU n 1 47 LYS n 1 48 GLY n 1 49 TYR n 1 50 TYR n 1 51 ALA n 1 52 THR n 1 53 SER n 1 54 LEU n 1 55 ASP n 1 56 ASP n 1 57 ILE n 1 58 ALA n 1 59 ASP n 1 60 ARG n 1 61 ILE n 1 62 GLY n 1 63 PHE n 1 64 THR n 1 65 LYS n 1 66 PRO n 1 67 ALA n 1 68 ILE n 1 69 TYR n 1 70 TYR n 1 71 TYR n 1 72 PHE n 1 73 LYS n 1 74 SER n 1 75 LYS n 1 76 GLU n 1 77 ASP n 1 78 VAL n 1 79 LEU n 1 80 PHE n 1 81 ALA n 1 82 ILE n 1 83 VAL n 1 84 ASN n 1 85 SER n 1 86 ILE n 1 87 VAL n 1 88 ASP n 1 89 GLU n 1 90 ALA n 1 91 LEU n 1 92 GLU n 1 93 ARG n 1 94 PHE n 1 95 HIS n 1 96 ALA n 1 97 ILE n 1 98 ALA n 1 99 ALA n 1 100 GLY n 1 101 PRO n 1 102 GLY n 1 103 SER n 1 104 PRO n 1 105 GLY n 1 106 GLU n 1 107 ARG n 1 108 ILE n 1 109 HIS n 1 110 ALA n 1 111 LEU n 1 112 LEU n 1 113 VAL n 1 114 GLU n 1 115 HIS n 1 116 THR n 1 117 ARG n 1 118 THR n 1 119 ILE n 1 120 LEU n 1 121 ARG n 1 122 ASN n 1 123 LEU n 1 124 ASP n 1 125 ALA n 1 126 ASN n 1 127 THR n 1 128 LEU n 1 129 PHE n 1 130 TYR n 1 131 ASN n 1 132 GLU n 1 133 ARG n 1 134 GLY n 1 135 LEU n 1 136 LEU n 1 137 SER n 1 138 PRO n 1 139 GLU n 1 140 ARG n 1 141 GLU n 1 142 ARG n 1 143 GLU n 1 144 MSE n 1 145 ARG n 1 146 LYS n 1 147 ARG n 1 148 GLU n 1 149 ARG n 1 150 GLU n 1 151 TYR n 1 152 THR n 1 153 GLU n 1 154 ILE n 1 155 MSE n 1 156 GLN n 1 157 ARG n 1 158 LEU n 1 159 TYR n 1 160 ALA n 1 161 GLU n 1 162 GLY n 1 163 VAL n 1 164 ALA n 1 165 THR n 1 166 GLY n 1 167 GLU n 1 168 LEU n 1 169 LEU n 1 170 ASP n 1 171 VAL n 1 172 ASP n 1 173 PRO n 1 174 THR n 1 175 VAL n 1 176 ALA n 1 177 THR n 1 178 ALA n 1 179 THR n 1 180 LEU n 1 181 LEU n 1 182 GLY n 1 183 ALA n 1 184 ALA n 1 185 ILE n 1 186 TRP n 1 187 THR n 1 188 TYR n 1 189 ARG n 1 190 TRP n 1 191 TYR n 1 192 ASP n 1 193 PRO n 1 194 GLU n 1 195 GLY n 1 196 ARG n 1 197 LEU n 1 198 SER n 1 199 ALA n 1 200 ASP n 1 201 GLU n 1 202 VAL n 1 203 VAL n 1 204 GLU n 1 205 GLN n 1 206 ILE n 1 207 THR n 1 208 ARG n 1 209 LEU n 1 210 LEU n 1 211 LEU n 1 212 ASN n 1 213 GLY n 1 214 TYR n 1 215 ARG n 1 216 ARG n 1 217 PRO n 1 218 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_290855.1, Tfu_2799' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermobifida fusca YX' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269800 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q47L40_THEFY _struct_ref.pdbx_db_accession Q47L40 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGQRSDSDHVMAEATTDKRQGHTRGRTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFA IVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILRNLDANTVFYNERGLLSPEREREMRKREREYTEIMQRLYAE GVATGELLDVDPTVATATLLGAAIWTYRWYDPEGRLSADEVVEQITRLLLNGYRRPA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DCF A 2 ? 218 ? Q47L40 1 ? 217 ? 1 217 2 1 3DCF B 2 ? 218 ? Q47L40 1 ? 217 ? 1 217 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DCF GLY A 1 ? UNP Q47L40 ? ? 'expression tag' 0 1 1 3DCF LEU A 128 ? UNP Q47L40 VAL 127 'SEE REMARK 999' 127 2 2 3DCF GLY B 1 ? UNP Q47L40 ? ? 'expression tag' 0 3 2 3DCF LEU B 128 ? UNP Q47L40 VAL 127 'SEE REMARK 999' 127 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DCF # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '31.0% 2-methyl-2,4-pentanediol, 0.2M sodium chloride, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-05-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ;Single crystal Si(111) bent monochromator (ho rizontal focusing) ; _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97968 1.0 2 0.97917 1.0 3 0.91837 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97968,0.97917,0.91837 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DCF _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 29.074 _reflns.number_obs 15426 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_netI_over_sigmaI 11.120 _reflns.percent_possible_obs 93.600 _reflns.B_iso_Wilson_estimate 49.009 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.50 2.59 3928 ? 2486 0.352 2.3 ? ? ? ? ? 81.30 ? 1 2.59 2.69 4363 ? 2653 0.298 2.8 ? ? ? ? ? 88.60 ? 2 2.69 2.81 4633 ? 2739 0.212 3.9 ? ? ? ? ? 91.10 ? 3 2.81 2.96 5084 ? 2897 0.156 5.2 ? ? ? ? ? 92.50 ? 4 2.96 3.15 5392 ? 2959 0.118 6.7 ? ? ? ? ? 95.10 ? 5 3.15 3.39 5569 ? 2949 0.071 10.3 ? ? ? ? ? 96.20 ? 6 3.39 3.73 5738 ? 2989 0.047 14.2 ? ? ? ? ? 97.20 ? 7 3.73 4.26 5766 ? 2981 0.033 18.5 ? ? ? ? ? 98.00 ? 8 4.26 5.35 5855 ? 3032 0.029 21.1 ? ? ? ? ? 98.40 ? 9 5.35 ? 5933 ? 3064 0.027 22.5 ? ? ? ? ? 97.20 ? 10 # _refine.entry_id 3DCF _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 29.074 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.850 _refine.ls_number_reflns_obs 15414 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. ; _refine.ls_R_factor_obs 0.243 _refine.ls_R_factor_R_work 0.241 _refine.ls_R_factor_R_free 0.277 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 772 _refine.B_iso_mean 36.112 _refine.aniso_B[1][1] 0.150 _refine.aniso_B[2][2] -0.410 _refine.aniso_B[3][3] -0.120 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.780 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.921 _refine.correlation_coeff_Fo_to_Fc_free 0.898 _refine.pdbx_overall_ESU_R 0.691 _refine.pdbx_overall_ESU_R_Free 0.324 _refine.overall_SU_ML 0.260 _refine.overall_SU_B 11.675 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2978 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 3049 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 29.074 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3037 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 2090 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4121 1.438 1.965 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 5025 1.284 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 368 3.086 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 153 30.887 22.418 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 512 12.450 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 37 9.972 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 462 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 3387 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 677 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 592 0.150 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1813 0.118 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1426 0.144 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1400 0.069 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 90 0.100 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 11 0.055 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 45 0.098 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.055 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2327 0.846 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 743 0.135 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2958 1.144 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1367 2.317 6.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1161 3.259 8.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'TIGHT POSITIONAL' A 2447 0.020 0.050 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'TIGHT THERMAL' A 2447 0.040 0.500 1 'X-RAY DIFFRACTION' 2 ? ? ? # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.650 _refine_ls_shell.number_reflns_R_work 974 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.305 _refine_ls_shell.R_factor_R_free 0.309 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1031 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 31 A 216 1 . . ASP ARG A 30 A 215 1 ? 2 1 B 31 B 216 1 . . ASP ARG B 30 B 215 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3DCF _struct.title ;Crystal structure of transcriptional regulator of the TetR/AcrR family (YP_290855.1) from THERMOBIFIDA FUSCA YX-ER1 at 2.50 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_290855.1, transcriptional regulator of the TetR/AcrR family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, DNA-binding, Transcription, Transcription regulation, Bacterial regulatory proteins, tetR family, transcription regulator ; _struct_keywords.pdbx_keywords 'transcription regulator' _struct_keywords.entry_id 3DCF # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 30 ? LYS A 47 ? ASN A 29 LYS A 46 1 ? 18 HELX_P HELX_P2 2 SER A 53 ? GLY A 62 ? SER A 52 GLY A 61 1 ? 10 HELX_P HELX_P3 3 THR A 64 ? PHE A 72 ? THR A 63 PHE A 71 1 ? 9 HELX_P HELX_P4 4 SER A 74 ? ALA A 99 ? SER A 73 ALA A 98 1 ? 26 HELX_P HELX_P5 5 SER A 103 ? ASN A 122 ? SER A 102 ASN A 121 1 ? 20 HELX_P HELX_P6 6 ASN A 122 ? ASN A 131 ? ASN A 121 ASN A 130 1 ? 10 HELX_P HELX_P7 7 SER A 137 ? THR A 165 ? SER A 136 THR A 164 1 ? 29 HELX_P HELX_P8 8 ASP A 172 ? TRP A 186 ? ASP A 171 TRP A 185 1 ? 15 HELX_P HELX_P9 9 TRP A 186 ? TYR A 191 ? TRP A 185 TYR A 190 1 ? 6 HELX_P HELX_P10 10 SER A 198 ? GLY A 213 ? SER A 197 GLY A 212 1 ? 16 HELX_P HELX_P11 11 ASN B 30 ? LYS B 47 ? ASN B 29 LYS B 46 1 ? 18 HELX_P HELX_P12 12 SER B 53 ? GLY B 62 ? SER B 52 GLY B 61 1 ? 10 HELX_P HELX_P13 13 THR B 64 ? PHE B 72 ? THR B 63 PHE B 71 1 ? 9 HELX_P HELX_P14 14 SER B 74 ? ALA B 99 ? SER B 73 ALA B 98 1 ? 26 HELX_P HELX_P15 15 SER B 103 ? ASN B 122 ? SER B 102 ASN B 121 1 ? 20 HELX_P HELX_P16 16 ASN B 122 ? ASN B 131 ? ASN B 121 ASN B 130 1 ? 10 HELX_P HELX_P17 17 SER B 137 ? THR B 165 ? SER B 136 THR B 164 1 ? 29 HELX_P HELX_P18 18 ASP B 172 ? TRP B 186 ? ASP B 171 TRP B 185 1 ? 15 HELX_P HELX_P19 19 TRP B 186 ? TYR B 191 ? TRP B 185 TYR B 190 1 ? 6 HELX_P HELX_P20 20 SER B 198 ? GLY B 213 ? SER B 197 GLY B 212 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 143 C ? ? ? 1_555 A MSE 144 N ? ? A GLU 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? A MSE 144 C ? ? ? 1_555 A ARG 145 N ? ? A MSE 143 A ARG 144 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale3 covale both ? A ILE 154 C ? ? ? 1_555 A MSE 155 N ? ? A ILE 153 A MSE 154 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 155 C ? ? ? 1_555 A GLN 156 N ? ? A MSE 154 A GLN 155 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale5 covale both ? B GLU 143 C ? ? ? 1_555 B MSE 144 N ? ? B GLU 142 B MSE 143 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale6 covale both ? B MSE 144 C ? ? ? 1_555 B ARG 145 N ? ? B MSE 143 B ARG 144 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? B ILE 154 C ? ? ? 1_555 B MSE 155 N ? ? B ILE 153 B MSE 154 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? B MSE 155 C ? ? ? 1_555 B GLN 156 N ? ? B MSE 154 B GLN 155 1_555 ? ? ? ? ? ? ? 1.341 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3DCF _atom_sites.fract_transf_matrix[1][1] 0.020890 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005297 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014789 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014136 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 GLY 3 2 ? ? ? A . n A 1 4 GLN 4 3 ? ? ? A . n A 1 5 ARG 5 4 ? ? ? A . n A 1 6 SER 6 5 ? ? ? A . n A 1 7 ASP 7 6 ? ? ? A . n A 1 8 SER 8 7 ? ? ? A . n A 1 9 ASP 9 8 ? ? ? A . n A 1 10 HIS 10 9 ? ? ? A . n A 1 11 VAL 11 10 ? ? ? A . n A 1 12 MSE 12 11 ? ? ? A . n A 1 13 ALA 13 12 ? ? ? A . n A 1 14 GLU 14 13 ? ? ? A . n A 1 15 ALA 15 14 ? ? ? A . n A 1 16 THR 16 15 ? ? ? A . n A 1 17 THR 17 16 ? ? ? A . n A 1 18 ASP 18 17 ? ? ? A . n A 1 19 LYS 19 18 ? ? ? A . n A 1 20 ARG 20 19 ? ? ? A . n A 1 21 GLN 21 20 ? ? ? A . n A 1 22 GLY 22 21 ? ? ? A . n A 1 23 HIS 23 22 ? ? ? A . n A 1 24 THR 24 23 ? ? ? A . n A 1 25 ARG 25 24 ? ? ? A . n A 1 26 GLY 26 25 ? ? ? A . n A 1 27 ARG 27 26 ? ? ? A . n A 1 28 THR 28 27 ? ? ? A . n A 1 29 GLY 29 28 ? ? ? A . n A 1 30 ASN 30 29 29 ASN ASN A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 GLN 35 34 34 GLN GLN A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 TYR 49 48 48 TYR TYR A . n A 1 50 TYR 50 49 49 TYR TYR A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ARG 60 59 59 ARG ARG A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 PHE 63 62 62 PHE PHE A . n A 1 64 THR 64 63 63 THR THR A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 PRO 66 65 65 PRO PRO A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 TYR 69 68 68 TYR TYR A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 TYR 71 70 70 TYR TYR A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 LYS 73 72 72 LYS LYS A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 ILE 82 81 81 ILE ILE A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 ASN 84 83 83 ASN ASN A . n A 1 85 SER 85 84 84 SER SER A . n A 1 86 ILE 86 85 85 ILE ILE A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 GLU 89 88 88 GLU GLU A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 ARG 93 92 92 ARG ARG A . n A 1 94 PHE 94 93 93 PHE PHE A . n A 1 95 HIS 95 94 94 HIS HIS A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 PRO 101 100 100 PRO PRO A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 ARG 107 106 106 ARG ARG A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 HIS 109 108 108 HIS HIS A . n A 1 110 ALA 110 109 109 ALA ALA A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 HIS 115 114 114 HIS HIS A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 THR 118 117 117 THR THR A . n A 1 119 ILE 119 118 118 ILE ILE A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 ARG 121 120 120 ARG ARG A . n A 1 122 ASN 122 121 121 ASN ASN A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 ASP 124 123 123 ASP ASP A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 ASN 126 125 125 ASN ASN A . n A 1 127 THR 127 126 126 THR THR A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 PHE 129 128 128 PHE PHE A . n A 1 130 TYR 130 129 129 TYR TYR A . n A 1 131 ASN 131 130 130 ASN ASN A . n A 1 132 GLU 132 131 ? ? ? A . n A 1 133 ARG 133 132 ? ? ? A . n A 1 134 GLY 134 133 ? ? ? A . n A 1 135 LEU 135 134 ? ? ? A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 SER 137 136 136 SER SER A . n A 1 138 PRO 138 137 137 PRO PRO A . n A 1 139 GLU 139 138 138 GLU GLU A . n A 1 140 ARG 140 139 139 ARG ARG A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 MSE 144 143 143 MSE MSE A . n A 1 145 ARG 145 144 144 ARG ARG A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 ARG 147 146 146 ARG ARG A . n A 1 148 GLU 148 147 147 GLU GLU A . n A 1 149 ARG 149 148 148 ARG ARG A . n A 1 150 GLU 150 149 149 GLU GLU A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 GLU 153 152 152 GLU GLU A . n A 1 154 ILE 154 153 153 ILE ILE A . n A 1 155 MSE 155 154 154 MSE MSE A . n A 1 156 GLN 156 155 155 GLN GLN A . n A 1 157 ARG 157 156 156 ARG ARG A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 TYR 159 158 158 TYR TYR A . n A 1 160 ALA 160 159 159 ALA ALA A . n A 1 161 GLU 161 160 160 GLU GLU A . n A 1 162 GLY 162 161 161 GLY GLY A . n A 1 163 VAL 163 162 162 VAL VAL A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 THR 165 164 164 THR THR A . n A 1 166 GLY 166 165 165 GLY GLY A . n A 1 167 GLU 167 166 166 GLU GLU A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 ASP 170 169 169 ASP ASP A . n A 1 171 VAL 171 170 170 VAL VAL A . n A 1 172 ASP 172 171 171 ASP ASP A . n A 1 173 PRO 173 172 172 PRO PRO A . n A 1 174 THR 174 173 173 THR THR A . n A 1 175 VAL 175 174 174 VAL VAL A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 THR 177 176 176 THR THR A . n A 1 178 ALA 178 177 177 ALA ALA A . n A 1 179 THR 179 178 178 THR THR A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 GLY 182 181 181 GLY GLY A . n A 1 183 ALA 183 182 182 ALA ALA A . n A 1 184 ALA 184 183 183 ALA ALA A . n A 1 185 ILE 185 184 184 ILE ILE A . n A 1 186 TRP 186 185 185 TRP TRP A . n A 1 187 THR 187 186 186 THR THR A . n A 1 188 TYR 188 187 187 TYR TYR A . n A 1 189 ARG 189 188 188 ARG ARG A . n A 1 190 TRP 190 189 189 TRP TRP A . n A 1 191 TYR 191 190 190 TYR TYR A . n A 1 192 ASP 192 191 191 ASP ASP A . n A 1 193 PRO 193 192 192 PRO PRO A . n A 1 194 GLU 194 193 193 GLU GLU A . n A 1 195 GLY 195 194 194 GLY GLY A . n A 1 196 ARG 196 195 195 ARG ARG A . n A 1 197 LEU 197 196 196 LEU LEU A . n A 1 198 SER 198 197 197 SER SER A . n A 1 199 ALA 199 198 198 ALA ALA A . n A 1 200 ASP 200 199 199 ASP ASP A . n A 1 201 GLU 201 200 200 GLU GLU A . n A 1 202 VAL 202 201 201 VAL VAL A . n A 1 203 VAL 203 202 202 VAL VAL A . n A 1 204 GLU 204 203 203 GLU GLU A . n A 1 205 GLN 205 204 204 GLN GLN A . n A 1 206 ILE 206 205 205 ILE ILE A . n A 1 207 THR 207 206 206 THR THR A . n A 1 208 ARG 208 207 207 ARG ARG A . n A 1 209 LEU 209 208 208 LEU LEU A . n A 1 210 LEU 210 209 209 LEU LEU A . n A 1 211 LEU 211 210 210 LEU LEU A . n A 1 212 ASN 212 211 211 ASN ASN A . n A 1 213 GLY 213 212 212 GLY GLY A . n A 1 214 TYR 214 213 213 TYR TYR A . n A 1 215 ARG 215 214 214 ARG ARG A . n A 1 216 ARG 216 215 215 ARG ARG A . n A 1 217 PRO 217 216 216 PRO PRO A . n A 1 218 ALA 218 217 217 ALA ALA A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 GLY 3 2 ? ? ? B . n B 1 4 GLN 4 3 ? ? ? B . n B 1 5 ARG 5 4 ? ? ? B . n B 1 6 SER 6 5 ? ? ? B . n B 1 7 ASP 7 6 ? ? ? B . n B 1 8 SER 8 7 ? ? ? B . n B 1 9 ASP 9 8 ? ? ? B . n B 1 10 HIS 10 9 ? ? ? B . n B 1 11 VAL 11 10 ? ? ? B . n B 1 12 MSE 12 11 ? ? ? B . n B 1 13 ALA 13 12 ? ? ? B . n B 1 14 GLU 14 13 ? ? ? B . n B 1 15 ALA 15 14 ? ? ? B . n B 1 16 THR 16 15 ? ? ? B . n B 1 17 THR 17 16 ? ? ? B . n B 1 18 ASP 18 17 ? ? ? B . n B 1 19 LYS 19 18 ? ? ? B . n B 1 20 ARG 20 19 ? ? ? B . n B 1 21 GLN 21 20 ? ? ? B . n B 1 22 GLY 22 21 ? ? ? B . n B 1 23 HIS 23 22 ? ? ? B . n B 1 24 THR 24 23 ? ? ? B . n B 1 25 ARG 25 24 ? ? ? B . n B 1 26 GLY 26 25 ? ? ? B . n B 1 27 ARG 27 26 ? ? ? B . n B 1 28 THR 28 27 ? ? ? B . n B 1 29 GLY 29 28 ? ? ? B . n B 1 30 ASN 30 29 29 ASN ASN B . n B 1 31 ASP 31 30 30 ASP ASP B . n B 1 32 ARG 32 31 31 ARG ARG B . n B 1 33 ARG 33 32 32 ARG ARG B . n B 1 34 THR 34 33 33 THR THR B . n B 1 35 GLN 35 34 34 GLN GLN B . n B 1 36 ILE 36 35 35 ILE ILE B . n B 1 37 ILE 37 36 36 ILE ILE B . n B 1 38 LYS 38 37 37 LYS LYS B . n B 1 39 VAL 39 38 38 VAL VAL B . n B 1 40 ALA 40 39 39 ALA ALA B . n B 1 41 THR 41 40 40 THR THR B . n B 1 42 GLU 42 41 41 GLU GLU B . n B 1 43 LEU 43 42 42 LEU LEU B . n B 1 44 PHE 44 43 43 PHE PHE B . n B 1 45 ARG 45 44 44 ARG ARG B . n B 1 46 GLU 46 45 45 GLU GLU B . n B 1 47 LYS 47 46 46 LYS LYS B . n B 1 48 GLY 48 47 47 GLY GLY B . n B 1 49 TYR 49 48 48 TYR TYR B . n B 1 50 TYR 50 49 49 TYR TYR B . n B 1 51 ALA 51 50 50 ALA ALA B . n B 1 52 THR 52 51 51 THR THR B . n B 1 53 SER 53 52 52 SER SER B . n B 1 54 LEU 54 53 53 LEU LEU B . n B 1 55 ASP 55 54 54 ASP ASP B . n B 1 56 ASP 56 55 55 ASP ASP B . n B 1 57 ILE 57 56 56 ILE ILE B . n B 1 58 ALA 58 57 57 ALA ALA B . n B 1 59 ASP 59 58 58 ASP ASP B . n B 1 60 ARG 60 59 59 ARG ARG B . n B 1 61 ILE 61 60 60 ILE ILE B . n B 1 62 GLY 62 61 61 GLY GLY B . n B 1 63 PHE 63 62 62 PHE PHE B . n B 1 64 THR 64 63 63 THR THR B . n B 1 65 LYS 65 64 64 LYS LYS B . n B 1 66 PRO 66 65 65 PRO PRO B . n B 1 67 ALA 67 66 66 ALA ALA B . n B 1 68 ILE 68 67 67 ILE ILE B . n B 1 69 TYR 69 68 68 TYR TYR B . n B 1 70 TYR 70 69 69 TYR TYR B . n B 1 71 TYR 71 70 70 TYR TYR B . n B 1 72 PHE 72 71 71 PHE PHE B . n B 1 73 LYS 73 72 72 LYS LYS B . n B 1 74 SER 74 73 73 SER SER B . n B 1 75 LYS 75 74 74 LYS LYS B . n B 1 76 GLU 76 75 75 GLU GLU B . n B 1 77 ASP 77 76 76 ASP ASP B . n B 1 78 VAL 78 77 77 VAL VAL B . n B 1 79 LEU 79 78 78 LEU LEU B . n B 1 80 PHE 80 79 79 PHE PHE B . n B 1 81 ALA 81 80 80 ALA ALA B . n B 1 82 ILE 82 81 81 ILE ILE B . n B 1 83 VAL 83 82 82 VAL VAL B . n B 1 84 ASN 84 83 83 ASN ASN B . n B 1 85 SER 85 84 84 SER SER B . n B 1 86 ILE 86 85 85 ILE ILE B . n B 1 87 VAL 87 86 86 VAL VAL B . n B 1 88 ASP 88 87 87 ASP ASP B . n B 1 89 GLU 89 88 88 GLU GLU B . n B 1 90 ALA 90 89 89 ALA ALA B . n B 1 91 LEU 91 90 90 LEU LEU B . n B 1 92 GLU 92 91 91 GLU GLU B . n B 1 93 ARG 93 92 92 ARG ARG B . n B 1 94 PHE 94 93 93 PHE PHE B . n B 1 95 HIS 95 94 94 HIS HIS B . n B 1 96 ALA 96 95 95 ALA ALA B . n B 1 97 ILE 97 96 96 ILE ILE B . n B 1 98 ALA 98 97 97 ALA ALA B . n B 1 99 ALA 99 98 98 ALA ALA B . n B 1 100 GLY 100 99 99 GLY GLY B . n B 1 101 PRO 101 100 100 PRO PRO B . n B 1 102 GLY 102 101 101 GLY GLY B . n B 1 103 SER 103 102 102 SER SER B . n B 1 104 PRO 104 103 103 PRO PRO B . n B 1 105 GLY 105 104 104 GLY GLY B . n B 1 106 GLU 106 105 105 GLU GLU B . n B 1 107 ARG 107 106 106 ARG ARG B . n B 1 108 ILE 108 107 107 ILE ILE B . n B 1 109 HIS 109 108 108 HIS HIS B . n B 1 110 ALA 110 109 109 ALA ALA B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 LEU 112 111 111 LEU LEU B . n B 1 113 VAL 113 112 112 VAL VAL B . n B 1 114 GLU 114 113 113 GLU GLU B . n B 1 115 HIS 115 114 114 HIS HIS B . n B 1 116 THR 116 115 115 THR THR B . n B 1 117 ARG 117 116 116 ARG ARG B . n B 1 118 THR 118 117 117 THR THR B . n B 1 119 ILE 119 118 118 ILE ILE B . n B 1 120 LEU 120 119 119 LEU LEU B . n B 1 121 ARG 121 120 120 ARG ARG B . n B 1 122 ASN 122 121 121 ASN ASN B . n B 1 123 LEU 123 122 122 LEU LEU B . n B 1 124 ASP 124 123 123 ASP ASP B . n B 1 125 ALA 125 124 124 ALA ALA B . n B 1 126 ASN 126 125 125 ASN ASN B . n B 1 127 THR 127 126 126 THR THR B . n B 1 128 LEU 128 127 127 LEU LEU B . n B 1 129 PHE 129 128 128 PHE PHE B . n B 1 130 TYR 130 129 129 TYR TYR B . n B 1 131 ASN 131 130 130 ASN ASN B . n B 1 132 GLU 132 131 ? ? ? B . n B 1 133 ARG 133 132 ? ? ? B . n B 1 134 GLY 134 133 ? ? ? B . n B 1 135 LEU 135 134 ? ? ? B . n B 1 136 LEU 136 135 135 LEU LEU B . n B 1 137 SER 137 136 136 SER SER B . n B 1 138 PRO 138 137 137 PRO PRO B . n B 1 139 GLU 139 138 138 GLU GLU B . n B 1 140 ARG 140 139 139 ARG ARG B . n B 1 141 GLU 141 140 140 GLU GLU B . n B 1 142 ARG 142 141 141 ARG ARG B . n B 1 143 GLU 143 142 142 GLU GLU B . n B 1 144 MSE 144 143 143 MSE MSE B . n B 1 145 ARG 145 144 144 ARG ARG B . n B 1 146 LYS 146 145 145 LYS LYS B . n B 1 147 ARG 147 146 146 ARG ARG B . n B 1 148 GLU 148 147 147 GLU GLU B . n B 1 149 ARG 149 148 148 ARG ARG B . n B 1 150 GLU 150 149 149 GLU GLU B . n B 1 151 TYR 151 150 150 TYR TYR B . n B 1 152 THR 152 151 151 THR THR B . n B 1 153 GLU 153 152 152 GLU GLU B . n B 1 154 ILE 154 153 153 ILE ILE B . n B 1 155 MSE 155 154 154 MSE MSE B . n B 1 156 GLN 156 155 155 GLN GLN B . n B 1 157 ARG 157 156 156 ARG ARG B . n B 1 158 LEU 158 157 157 LEU LEU B . n B 1 159 TYR 159 158 158 TYR TYR B . n B 1 160 ALA 160 159 159 ALA ALA B . n B 1 161 GLU 161 160 160 GLU GLU B . n B 1 162 GLY 162 161 161 GLY GLY B . n B 1 163 VAL 163 162 162 VAL VAL B . n B 1 164 ALA 164 163 163 ALA ALA B . n B 1 165 THR 165 164 164 THR THR B . n B 1 166 GLY 166 165 165 GLY GLY B . n B 1 167 GLU 167 166 166 GLU GLU B . n B 1 168 LEU 168 167 167 LEU LEU B . n B 1 169 LEU 169 168 168 LEU LEU B . n B 1 170 ASP 170 169 169 ASP ASP B . n B 1 171 VAL 171 170 170 VAL VAL B . n B 1 172 ASP 172 171 171 ASP ASP B . n B 1 173 PRO 173 172 172 PRO PRO B . n B 1 174 THR 174 173 173 THR THR B . n B 1 175 VAL 175 174 174 VAL VAL B . n B 1 176 ALA 176 175 175 ALA ALA B . n B 1 177 THR 177 176 176 THR THR B . n B 1 178 ALA 178 177 177 ALA ALA B . n B 1 179 THR 179 178 178 THR THR B . n B 1 180 LEU 180 179 179 LEU LEU B . n B 1 181 LEU 181 180 180 LEU LEU B . n B 1 182 GLY 182 181 181 GLY GLY B . n B 1 183 ALA 183 182 182 ALA ALA B . n B 1 184 ALA 184 183 183 ALA ALA B . n B 1 185 ILE 185 184 184 ILE ILE B . n B 1 186 TRP 186 185 185 TRP TRP B . n B 1 187 THR 187 186 186 THR THR B . n B 1 188 TYR 188 187 187 TYR TYR B . n B 1 189 ARG 189 188 188 ARG ARG B . n B 1 190 TRP 190 189 189 TRP TRP B . n B 1 191 TYR 191 190 190 TYR TYR B . n B 1 192 ASP 192 191 191 ASP ASP B . n B 1 193 PRO 193 192 192 PRO PRO B . n B 1 194 GLU 194 193 193 GLU GLU B . n B 1 195 GLY 195 194 194 GLY GLY B . n B 1 196 ARG 196 195 195 ARG ARG B . n B 1 197 LEU 197 196 196 LEU LEU B . n B 1 198 SER 198 197 197 SER SER B . n B 1 199 ALA 199 198 198 ALA ALA B . n B 1 200 ASP 200 199 199 ASP ASP B . n B 1 201 GLU 201 200 200 GLU GLU B . n B 1 202 VAL 202 201 201 VAL VAL B . n B 1 203 VAL 203 202 202 VAL VAL B . n B 1 204 GLU 204 203 203 GLU GLU B . n B 1 205 GLN 205 204 204 GLN GLN B . n B 1 206 ILE 206 205 205 ILE ILE B . n B 1 207 THR 207 206 206 THR THR B . n B 1 208 ARG 208 207 207 ARG ARG B . n B 1 209 LEU 209 208 208 LEU LEU B . n B 1 210 LEU 210 209 209 LEU LEU B . n B 1 211 LEU 211 210 210 LEU LEU B . n B 1 212 ASN 212 211 211 ASN ASN B . n B 1 213 GLY 213 212 212 GLY GLY B . n B 1 214 TYR 214 213 213 TYR TYR B . n B 1 215 ARG 215 214 214 ARG ARG B . n B 1 216 ARG 216 215 215 ARG ARG B . n B 1 217 PRO 217 216 ? ? ? B . n B 1 218 ALA 218 217 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 218 1 HOH HOH A . C 2 HOH 2 219 3 HOH HOH A . C 2 HOH 3 220 5 HOH HOH A . C 2 HOH 4 221 7 HOH HOH A . C 2 HOH 5 222 9 HOH HOH A . C 2 HOH 6 223 10 HOH HOH A . C 2 HOH 7 224 12 HOH HOH A . C 2 HOH 8 225 14 HOH HOH A . C 2 HOH 9 226 15 HOH HOH A . C 2 HOH 10 227 16 HOH HOH A . C 2 HOH 11 228 17 HOH HOH A . C 2 HOH 12 229 22 HOH HOH A . C 2 HOH 13 230 24 HOH HOH A . C 2 HOH 14 231 26 HOH HOH A . C 2 HOH 15 232 28 HOH HOH A . C 2 HOH 16 233 29 HOH HOH A . C 2 HOH 17 234 31 HOH HOH A . C 2 HOH 18 235 36 HOH HOH A . C 2 HOH 19 236 37 HOH HOH A . C 2 HOH 20 237 38 HOH HOH A . C 2 HOH 21 238 40 HOH HOH A . C 2 HOH 22 239 41 HOH HOH A . C 2 HOH 23 240 42 HOH HOH A . C 2 HOH 24 241 44 HOH HOH A . C 2 HOH 25 242 46 HOH HOH A . C 2 HOH 26 243 47 HOH HOH A . C 2 HOH 27 244 48 HOH HOH A . C 2 HOH 28 245 50 HOH HOH A . C 2 HOH 29 246 51 HOH HOH A . C 2 HOH 30 247 52 HOH HOH A . C 2 HOH 31 248 53 HOH HOH A . C 2 HOH 32 249 54 HOH HOH A . C 2 HOH 33 250 58 HOH HOH A . C 2 HOH 34 251 59 HOH HOH A . C 2 HOH 35 252 62 HOH HOH A . C 2 HOH 36 253 63 HOH HOH A . C 2 HOH 37 254 64 HOH HOH A . C 2 HOH 38 255 68 HOH HOH A . D 2 HOH 1 218 2 HOH HOH B . D 2 HOH 2 219 4 HOH HOH B . D 2 HOH 3 220 6 HOH HOH B . D 2 HOH 4 221 8 HOH HOH B . D 2 HOH 5 222 11 HOH HOH B . D 2 HOH 6 223 13 HOH HOH B . D 2 HOH 7 224 18 HOH HOH B . D 2 HOH 8 225 19 HOH HOH B . D 2 HOH 9 226 20 HOH HOH B . D 2 HOH 10 227 21 HOH HOH B . D 2 HOH 11 228 23 HOH HOH B . D 2 HOH 12 229 25 HOH HOH B . D 2 HOH 13 230 27 HOH HOH B . D 2 HOH 14 231 30 HOH HOH B . D 2 HOH 15 232 32 HOH HOH B . D 2 HOH 16 233 33 HOH HOH B . D 2 HOH 17 234 34 HOH HOH B . D 2 HOH 18 235 35 HOH HOH B . D 2 HOH 19 236 39 HOH HOH B . D 2 HOH 20 237 43 HOH HOH B . D 2 HOH 21 238 45 HOH HOH B . D 2 HOH 22 239 49 HOH HOH B . D 2 HOH 23 240 55 HOH HOH B . D 2 HOH 24 241 56 HOH HOH B . D 2 HOH 25 242 57 HOH HOH B . D 2 HOH 26 243 60 HOH HOH B . D 2 HOH 27 244 61 HOH HOH B . D 2 HOH 28 245 65 HOH HOH B . D 2 HOH 29 246 66 HOH HOH B . D 2 HOH 30 247 67 HOH HOH B . D 2 HOH 31 248 69 HOH HOH B . D 2 HOH 32 249 70 HOH HOH B . D 2 HOH 33 250 71 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 144 A MSE 143 ? MET SELENOMETHIONINE 2 A MSE 155 A MSE 154 ? MET SELENOMETHIONINE 3 B MSE 144 B MSE 143 ? MET SELENOMETHIONINE 4 B MSE 155 B MSE 154 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4080 ? 1 MORE -24 ? 1 'SSA (A^2)' 19680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3DCF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE DNA SEQUENCING OF THE CLONED CONSTRUCT SHOWS A LEUCINE AT POSITION 127 INSTEAD OF A VALINE. THE LEUCINE AT POSITION 127 IS SUPPORTED BY THE ELECTRON DENSITY. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 44 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 44 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 44 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.32 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.02 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 30 ? ? -62.54 -71.02 2 1 ASP B 30 ? ? -58.34 -73.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 31 ? NH1 ? A ARG 32 NH1 2 1 Y 1 A ARG 31 ? NH2 ? A ARG 32 NH2 3 1 Y 1 A GLN 34 ? CD ? A GLN 35 CD 4 1 Y 1 A GLN 34 ? OE1 ? A GLN 35 OE1 5 1 Y 1 A GLN 34 ? NE2 ? A GLN 35 NE2 6 1 Y 1 A LYS 37 ? CG ? A LYS 38 CG 7 1 Y 1 A LYS 37 ? CD ? A LYS 38 CD 8 1 Y 1 A LYS 37 ? CE ? A LYS 38 CE 9 1 Y 1 A LYS 37 ? NZ ? A LYS 38 NZ 10 1 Y 1 A ARG 44 ? CG ? A ARG 45 CG 11 1 Y 1 A ARG 44 ? CD ? A ARG 45 CD 12 1 Y 1 A ARG 44 ? NE ? A ARG 45 NE 13 1 Y 1 A ARG 44 ? CZ ? A ARG 45 CZ 14 1 Y 1 A ARG 44 ? NH1 ? A ARG 45 NH1 15 1 Y 1 A ARG 44 ? NH2 ? A ARG 45 NH2 16 1 Y 1 A ARG 59 ? CD ? A ARG 60 CD 17 1 Y 1 A ARG 59 ? NE ? A ARG 60 NE 18 1 Y 1 A ARG 59 ? CZ ? A ARG 60 CZ 19 1 Y 1 A ARG 59 ? NH1 ? A ARG 60 NH1 20 1 Y 1 A ARG 59 ? NH2 ? A ARG 60 NH2 21 1 Y 1 B LYS 37 ? CG ? B LYS 38 CG 22 1 Y 1 B LYS 37 ? CD ? B LYS 38 CD 23 1 Y 1 B LYS 37 ? CE ? B LYS 38 CE 24 1 Y 1 B LYS 37 ? NZ ? B LYS 38 NZ 25 1 Y 1 B GLU 41 ? CD ? B GLU 42 CD 26 1 Y 1 B GLU 41 ? OE1 ? B GLU 42 OE1 27 1 Y 1 B GLU 41 ? OE2 ? B GLU 42 OE2 28 1 Y 1 B ASN 130 ? CG ? B ASN 131 CG 29 1 Y 1 B ASN 130 ? OD1 ? B ASN 131 OD1 30 1 Y 1 B ASN 130 ? ND2 ? B ASN 131 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A GLY 2 ? A GLY 3 4 1 Y 1 A GLN 3 ? A GLN 4 5 1 Y 1 A ARG 4 ? A ARG 5 6 1 Y 1 A SER 5 ? A SER 6 7 1 Y 1 A ASP 6 ? A ASP 7 8 1 Y 1 A SER 7 ? A SER 8 9 1 Y 1 A ASP 8 ? A ASP 9 10 1 Y 1 A HIS 9 ? A HIS 10 11 1 Y 1 A VAL 10 ? A VAL 11 12 1 Y 1 A MSE 11 ? A MSE 12 13 1 Y 1 A ALA 12 ? A ALA 13 14 1 Y 1 A GLU 13 ? A GLU 14 15 1 Y 1 A ALA 14 ? A ALA 15 16 1 Y 1 A THR 15 ? A THR 16 17 1 Y 1 A THR 16 ? A THR 17 18 1 Y 1 A ASP 17 ? A ASP 18 19 1 Y 1 A LYS 18 ? A LYS 19 20 1 Y 1 A ARG 19 ? A ARG 20 21 1 Y 1 A GLN 20 ? A GLN 21 22 1 Y 1 A GLY 21 ? A GLY 22 23 1 Y 1 A HIS 22 ? A HIS 23 24 1 Y 1 A THR 23 ? A THR 24 25 1 Y 1 A ARG 24 ? A ARG 25 26 1 Y 1 A GLY 25 ? A GLY 26 27 1 Y 1 A ARG 26 ? A ARG 27 28 1 Y 1 A THR 27 ? A THR 28 29 1 Y 1 A GLY 28 ? A GLY 29 30 1 Y 1 A GLU 131 ? A GLU 132 31 1 Y 1 A ARG 132 ? A ARG 133 32 1 Y 1 A GLY 133 ? A GLY 134 33 1 Y 1 A LEU 134 ? A LEU 135 34 1 Y 1 B GLY 0 ? B GLY 1 35 1 Y 1 B MSE 1 ? B MSE 2 36 1 Y 1 B GLY 2 ? B GLY 3 37 1 Y 1 B GLN 3 ? B GLN 4 38 1 Y 1 B ARG 4 ? B ARG 5 39 1 Y 1 B SER 5 ? B SER 6 40 1 Y 1 B ASP 6 ? B ASP 7 41 1 Y 1 B SER 7 ? B SER 8 42 1 Y 1 B ASP 8 ? B ASP 9 43 1 Y 1 B HIS 9 ? B HIS 10 44 1 Y 1 B VAL 10 ? B VAL 11 45 1 Y 1 B MSE 11 ? B MSE 12 46 1 Y 1 B ALA 12 ? B ALA 13 47 1 Y 1 B GLU 13 ? B GLU 14 48 1 Y 1 B ALA 14 ? B ALA 15 49 1 Y 1 B THR 15 ? B THR 16 50 1 Y 1 B THR 16 ? B THR 17 51 1 Y 1 B ASP 17 ? B ASP 18 52 1 Y 1 B LYS 18 ? B LYS 19 53 1 Y 1 B ARG 19 ? B ARG 20 54 1 Y 1 B GLN 20 ? B GLN 21 55 1 Y 1 B GLY 21 ? B GLY 22 56 1 Y 1 B HIS 22 ? B HIS 23 57 1 Y 1 B THR 23 ? B THR 24 58 1 Y 1 B ARG 24 ? B ARG 25 59 1 Y 1 B GLY 25 ? B GLY 26 60 1 Y 1 B ARG 26 ? B ARG 27 61 1 Y 1 B THR 27 ? B THR 28 62 1 Y 1 B GLY 28 ? B GLY 29 63 1 Y 1 B GLU 131 ? B GLU 132 64 1 Y 1 B ARG 132 ? B ARG 133 65 1 Y 1 B GLY 133 ? B GLY 134 66 1 Y 1 B LEU 134 ? B LEU 135 67 1 Y 1 B PRO 216 ? B PRO 217 68 1 Y 1 B ALA 217 ? B ALA 218 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #