data_3DEW # _entry.id 3DEW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DEW RCSB RCSB047952 WWPDB D_1000047952 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id apc88507 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3DEW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cuff, M.E.' 1 'Bigelow, L.' 2 'Abdullah, J.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The structure of a putative TetR family transcriptional regulator from Geobacter sulfurreducens PCA.' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cuff, M.E.' 1 primary 'Bigelow, L.' 2 primary 'Abdullah, J.' 3 primary 'Joachimiak, A.' 4 # _cell.length_a 63.106 _cell.length_b 63.106 _cell.length_c 76.550 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3DEW _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3DEW _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, TetR family' 22780.838 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 5 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 6 water nat water 18.015 162 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)TRADCRSRL(MSE)EVATELFAQKGFYGVSIRELAQAAGASIS(MSE)ISYHFGGKEGLYAAVLQEQFACFG QLDDIRGQAGDPLAV(MSE)TAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAG(MSE)T RGLFRRDLHAVNSALALAG(MSE)VNYFFLSTLATEGLTSHSPDQDEELIRQYVAIFTRGI(MSE)ADGGAAPA ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDP LAVMTAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGM VNYFFLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMADGGAAPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier apc88507 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 THR n 1 6 ARG n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 ARG n 1 11 SER n 1 12 ARG n 1 13 LEU n 1 14 MSE n 1 15 GLU n 1 16 VAL n 1 17 ALA n 1 18 THR n 1 19 GLU n 1 20 LEU n 1 21 PHE n 1 22 ALA n 1 23 GLN n 1 24 LYS n 1 25 GLY n 1 26 PHE n 1 27 TYR n 1 28 GLY n 1 29 VAL n 1 30 SER n 1 31 ILE n 1 32 ARG n 1 33 GLU n 1 34 LEU n 1 35 ALA n 1 36 GLN n 1 37 ALA n 1 38 ALA n 1 39 GLY n 1 40 ALA n 1 41 SER n 1 42 ILE n 1 43 SER n 1 44 MSE n 1 45 ILE n 1 46 SER n 1 47 TYR n 1 48 HIS n 1 49 PHE n 1 50 GLY n 1 51 GLY n 1 52 LYS n 1 53 GLU n 1 54 GLY n 1 55 LEU n 1 56 TYR n 1 57 ALA n 1 58 ALA n 1 59 VAL n 1 60 LEU n 1 61 GLN n 1 62 GLU n 1 63 GLN n 1 64 PHE n 1 65 ALA n 1 66 CYS n 1 67 PHE n 1 68 GLY n 1 69 GLN n 1 70 LEU n 1 71 ASP n 1 72 ASP n 1 73 ILE n 1 74 ARG n 1 75 GLY n 1 76 GLN n 1 77 ALA n 1 78 GLY n 1 79 ASP n 1 80 PRO n 1 81 LEU n 1 82 ALA n 1 83 VAL n 1 84 MSE n 1 85 THR n 1 86 ALA n 1 87 TYR n 1 88 LEU n 1 89 ARG n 1 90 TRP n 1 91 THR n 1 92 ILE n 1 93 GLN n 1 94 ARG n 1 95 HIS n 1 96 ARG n 1 97 ASN n 1 98 ASN n 1 99 PRO n 1 100 GLN n 1 101 LEU n 1 102 LEU n 1 103 ARG n 1 104 PHE n 1 105 TYR n 1 106 THR n 1 107 SER n 1 108 GLU n 1 109 LEU n 1 110 THR n 1 111 ASN n 1 112 PRO n 1 113 THR n 1 114 PRO n 1 115 CYS n 1 116 PHE n 1 117 ALA n 1 118 ALA n 1 119 ILE n 1 120 VAL n 1 121 SER n 1 122 PRO n 1 123 ALA n 1 124 ILE n 1 125 ALA n 1 126 SER n 1 127 VAL n 1 128 ILE n 1 129 ARG n 1 130 LEU n 1 131 LEU n 1 132 ALA n 1 133 GLU n 1 134 SER n 1 135 ILE n 1 136 GLU n 1 137 ALA n 1 138 GLY n 1 139 MSE n 1 140 THR n 1 141 ARG n 1 142 GLY n 1 143 LEU n 1 144 PHE n 1 145 ARG n 1 146 ARG n 1 147 ASP n 1 148 LEU n 1 149 HIS n 1 150 ALA n 1 151 VAL n 1 152 ASN n 1 153 SER n 1 154 ALA n 1 155 LEU n 1 156 ALA n 1 157 LEU n 1 158 ALA n 1 159 GLY n 1 160 MSE n 1 161 VAL n 1 162 ASN n 1 163 TYR n 1 164 PHE n 1 165 PHE n 1 166 LEU n 1 167 SER n 1 168 THR n 1 169 LEU n 1 170 ALA n 1 171 THR n 1 172 GLU n 1 173 GLY n 1 174 LEU n 1 175 THR n 1 176 SER n 1 177 HIS n 1 178 SER n 1 179 PRO n 1 180 ASP n 1 181 GLN n 1 182 ASP n 1 183 GLU n 1 184 GLU n 1 185 LEU n 1 186 ILE n 1 187 ARG n 1 188 GLN n 1 189 TYR n 1 190 VAL n 1 191 ALA n 1 192 ILE n 1 193 PHE n 1 194 THR n 1 195 ARG n 1 196 GLY n 1 197 ILE n 1 198 MSE n 1 199 ALA n 1 200 ASP n 1 201 GLY n 1 202 GLY n 1 203 ALA n 1 204 ALA n 1 205 PRO n 1 206 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GSU0175 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PCA _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter sulfurreducens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35554 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q74GS0_GEOSL _struct_ref.pdbx_db_accession Q74GS0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVM TAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYF FLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMADGGAAPA ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DEW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 206 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q74GS0 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 203 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 203 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DEW SER A 1 ? UNP Q74GS0 ? ? 'EXPRESSION TAG' -2 1 1 3DEW ASN A 2 ? UNP Q74GS0 ? ? 'EXPRESSION TAG' -1 2 1 3DEW ALA A 3 ? UNP Q74GS0 ? ? 'EXPRESSION TAG' 0 3 1 3DEW MSE A 4 ? UNP Q74GS0 ? ? 'EXPRESSION TAG' 1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3DEW _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Na Acetate pH4.6, 4% PEG 4K, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-12-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97915 1.0 2 0.97937 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97915,0.97937 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3DEW _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 44.5 _reflns.number_all ? _reflns.number_obs 18099 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value 0.074 _reflns.pdbx_netI_over_sigmaI 9.8 _reflns.B_iso_Wilson_estimate 24.6 _reflns.pdbx_redundancy 10.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.483 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 10.8 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DEW _refine.ls_d_res_high 1.750 _refine.ls_d_res_low 44.500 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.300 _refine.ls_number_reflns_obs 18099 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_R_work 0.171 _refine.ls_R_factor_R_free 0.210 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 926 _refine.B_iso_mean 17.335 _refine.aniso_B[1][1] 0.430 _refine.aniso_B[2][2] 0.430 _refine.aniso_B[3][3] -0.650 _refine.aniso_B[1][2] 0.220 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.123 _refine.overall_SU_ML 0.080 _refine.overall_SU_B 4.961 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 18099 _refine.ls_R_factor_all 0.173 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1477 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 162 _refine_hist.number_atoms_total 1660 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 44.500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1725 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2351 1.430 1.961 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 233 4.846 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 78 32.301 22.692 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 289 13.456 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17 25.063 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 255 0.101 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1368 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 862 0.225 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1265 0.304 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 146 0.141 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 103 0.232 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 22 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1115 1.277 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1753 1.538 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 686 2.920 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 598 4.285 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.751 _refine_ls_shell.d_res_low 1.797 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.400 _refine_ls_shell.number_reflns_R_work 1249 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.190 _refine_ls_shell.R_factor_R_free 0.269 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 69 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1318 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DEW _struct.title 'The structure of a putative TetR family transcriptional regulator from Geobacter sulfurreducens PCA.' _struct.pdbx_descriptor 'Transcriptional regulator, TetR family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DEW _struct_keywords.pdbx_keywords 'transcription regulator' _struct_keywords.text ;TetR, transcriptional regulator, Geobacter sulfurreducens, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA-binding, Transcription, Transcription regulation, transcription regulator ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details 'authors state that the biological assembly is likely dimer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? GLY A 25 ? ASP A 5 GLY A 22 1 ? 18 HELX_P HELX_P2 2 PHE A 26 ? VAL A 29 ? PHE A 23 VAL A 26 5 ? 4 HELX_P HELX_P3 3 SER A 30 ? GLY A 39 ? SER A 27 GLY A 36 1 ? 10 HELX_P HELX_P4 4 SER A 41 ? PHE A 49 ? SER A 38 PHE A 46 1 ? 9 HELX_P HELX_P5 5 GLY A 50 ? ALA A 65 ? GLY A 47 ALA A 62 1 ? 16 HELX_P HELX_P6 6 CYS A 66 ? GLN A 69 ? CYS A 63 GLN A 66 5 ? 4 HELX_P HELX_P7 7 LEU A 70 ? GLY A 75 ? LEU A 67 GLY A 72 1 ? 6 HELX_P HELX_P8 8 ASP A 79 ? ASN A 98 ? ASP A 76 ASN A 95 1 ? 20 HELX_P HELX_P9 9 GLN A 100 ? ASN A 111 ? GLN A 97 ASN A 108 1 ? 12 HELX_P HELX_P10 10 PRO A 114 ? ILE A 119 ? PRO A 111 ILE A 116 1 ? 6 HELX_P HELX_P11 11 ILE A 119 ? ARG A 141 ? ILE A 116 ARG A 138 1 ? 23 HELX_P HELX_P12 12 HIS A 149 ? SER A 167 ? HIS A 146 SER A 164 1 ? 19 HELX_P HELX_P13 13 THR A 168 ? THR A 171 ? THR A 165 THR A 168 5 ? 4 HELX_P HELX_P14 14 SER A 178 ? ASP A 180 ? SER A 175 ASP A 177 5 ? 3 HELX_P HELX_P15 15 GLN A 181 ? GLY A 196 ? GLN A 178 GLY A 193 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 13 C ? ? ? 1_555 A MSE 14 N A ? A LEU 10 A MSE 11 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A LEU 13 C ? ? ? 1_555 A MSE 14 N B ? A LEU 10 A MSE 11 1_555 ? ? ? ? ? ? ? 1.343 ? covale3 covale ? ? A MSE 14 C A ? ? 1_555 A GLU 15 N ? ? A MSE 11 A GLU 12 1_555 ? ? ? ? ? ? ? 1.338 ? covale4 covale ? ? A MSE 14 C B ? ? 1_555 A GLU 15 N ? ? A MSE 11 A GLU 12 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A SER 43 C A ? ? 1_555 A MSE 44 N A ? A SER 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.343 ? covale6 covale ? ? A SER 43 C B ? ? 1_555 A MSE 44 N B ? A SER 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A MSE 44 C A ? ? 1_555 A ILE 45 N ? ? A MSE 41 A ILE 42 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? A MSE 44 C B ? ? 1_555 A ILE 45 N ? ? A MSE 41 A ILE 42 1_555 ? ? ? ? ? ? ? 1.334 ? covale9 covale ? ? A VAL 83 C ? ? ? 1_555 A MSE 84 N A ? A VAL 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale ? ? A VAL 83 C ? ? ? 1_555 A MSE 84 N B ? A VAL 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.325 ? covale11 covale ? ? A MSE 84 C A ? ? 1_555 A THR 85 N ? ? A MSE 81 A THR 82 1_555 ? ? ? ? ? ? ? 1.334 ? covale12 covale ? ? A MSE 84 C B ? ? 1_555 A THR 85 N ? ? A MSE 81 A THR 82 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? A GLY 138 C ? ? ? 1_555 A MSE 139 N ? ? A GLY 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.332 ? covale14 covale ? ? A MSE 139 C ? ? ? 1_555 A THR 140 N ? ? A MSE 136 A THR 137 1_555 ? ? ? ? ? ? ? 1.339 ? covale15 covale ? ? A GLY 159 C ? ? ? 1_555 A MSE 160 N A ? A GLY 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.334 ? covale16 covale ? ? A GLY 159 C ? ? ? 1_555 A MSE 160 N B ? A GLY 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.333 ? covale17 covale ? ? A MSE 160 C A ? ? 1_555 A VAL 161 N ? ? A MSE 157 A VAL 158 1_555 ? ? ? ? ? ? ? 1.333 ? covale18 covale ? ? A MSE 160 C B ? ? 1_555 A VAL 161 N ? ? A MSE 157 A VAL 158 1_555 ? ? ? ? ? ? ? 1.330 ? covale19 covale ? ? A ILE 197 C ? ? ? 1_555 A MSE 198 N A ? A ILE 194 A MSE 195 1_555 ? ? ? ? ? ? ? 1.336 ? covale20 covale ? ? A ILE 197 C ? ? ? 1_555 A MSE 198 N B ? A ILE 194 A MSE 195 1_555 ? ? ? ? ? ? ? 1.334 ? covale21 covale ? ? A MSE 198 C A ? ? 1_555 A ALA 199 N ? ? A MSE 195 A ALA 196 1_555 ? ? ? ? ? ? ? 1.334 ? covale22 covale ? ? A MSE 198 C B ? ? 1_555 A ALA 199 N ? ? A MSE 195 A ALA 196 1_555 ? ? ? ? ? ? ? 1.337 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 204' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE BME A 205' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 206' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 207' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 208' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE ACY A 209' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLY A 78 ? GLY A 75 . ? 1_555 ? 2 AC1 2 SER A 134 ? SER A 131 . ? 1_555 ? 3 AC2 3 HIS A 48 ? HIS A 45 . ? 6_554 ? 4 AC2 3 CYS A 115 ? CYS A 112 . ? 1_555 ? 5 AC2 3 HOH H . ? HOH A 353 . ? 1_555 ? 6 AC3 7 ASN A 152 ? ASN A 149 . ? 4_465 ? 7 AC3 7 PHE A 164 ? PHE A 161 . ? 1_555 ? 8 AC3 7 THR A 175 ? THR A 172 . ? 1_555 ? 9 AC3 7 SER A 176 ? SER A 173 . ? 1_555 ? 10 AC3 7 GLN A 181 ? GLN A 178 . ? 1_555 ? 11 AC3 7 LEU A 185 ? LEU A 182 . ? 1_555 ? 12 AC3 7 HOH H . ? HOH A 338 . ? 1_555 ? 13 AC4 3 GLY A 142 ? GLY A 139 . ? 1_555 ? 14 AC4 3 ARG A 146 ? ARG A 143 . ? 1_555 ? 15 AC4 3 ALA A 199 ? ALA A 196 . ? 4_465 ? 16 AC5 4 GLU A 183 ? GLU A 180 . ? 1_555 ? 17 AC5 4 ARG A 187 ? ARG A 184 . ? 1_555 ? 18 AC5 4 HOH H . ? HOH A 218 . ? 1_555 ? 19 AC5 4 HOH H . ? HOH A 370 . ? 1_555 ? 20 AC6 6 TYR A 87 ? TYR A 84 . ? 1_555 ? 21 AC6 6 ARG A 94 ? ARG A 91 . ? 1_555 ? 22 AC6 6 TYR A 105 ? TYR A 102 . ? 1_555 ? 23 AC6 6 ASN A 162 ? ASN A 159 . ? 1_555 ? 24 AC6 6 TYR A 163 ? TYR A 160 . ? 4_465 ? 25 AC6 6 HOH H . ? HOH A 232 . ? 1_555 ? # _atom_sites.entry_id 3DEW _atom_sites.fract_transf_matrix[1][1] 0.015846 _atom_sites.fract_transf_matrix[1][2] 0.009149 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018298 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013063 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 THR 5 2 ? ? ? A . n A 1 6 ARG 6 3 ? ? ? A . n A 1 7 ALA 7 4 ? ? ? A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 CYS 9 6 6 CYS CYS A . n A 1 10 ARG 10 7 7 ARG ARG A . n A 1 11 SER 11 8 8 SER SER A . n A 1 12 ARG 12 9 9 ARG ARG A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 MSE 14 11 11 MSE MSE A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 ALA 17 14 14 ALA ALA A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 PHE 21 18 18 PHE PHE A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 GLN 23 20 20 GLN GLN A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 GLY 25 22 22 GLY GLY A . n A 1 26 PHE 26 23 23 PHE PHE A . n A 1 27 TYR 27 24 24 TYR TYR A . n A 1 28 GLY 28 25 25 GLY GLY A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 SER 30 27 27 SER SER A . n A 1 31 ILE 31 28 28 ILE ILE A . n A 1 32 ARG 32 29 29 ARG ARG A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 GLN 36 33 33 GLN GLN A . n A 1 37 ALA 37 34 34 ALA ALA A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 ILE 42 39 39 ILE ILE A . n A 1 43 SER 43 40 40 SER SER A . n A 1 44 MSE 44 41 41 MSE MSE A . n A 1 45 ILE 45 42 42 ILE ILE A . n A 1 46 SER 46 43 43 SER SER A . n A 1 47 TYR 47 44 44 TYR TYR A . n A 1 48 HIS 48 45 45 HIS HIS A . n A 1 49 PHE 49 46 46 PHE PHE A . n A 1 50 GLY 50 47 47 GLY GLY A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 LYS 52 49 49 LYS LYS A . n A 1 53 GLU 53 50 50 GLU GLU A . n A 1 54 GLY 54 51 51 GLY GLY A . n A 1 55 LEU 55 52 52 LEU LEU A . n A 1 56 TYR 56 53 53 TYR TYR A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 ALA 58 55 55 ALA ALA A . n A 1 59 VAL 59 56 56 VAL VAL A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 GLN 61 58 58 GLN GLN A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 GLN 63 60 60 GLN GLN A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 ALA 65 62 62 ALA ALA A . n A 1 66 CYS 66 63 63 CYS CYS A . n A 1 67 PHE 67 64 64 PHE PHE A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 GLN 69 66 66 GLN GLN A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 ASP 72 69 69 ASP ASP A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 GLY 75 72 72 GLY GLY A . n A 1 76 GLN 76 73 73 GLN GLN A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 ASP 79 76 76 ASP ASP A . n A 1 80 PRO 80 77 77 PRO PRO A . n A 1 81 LEU 81 78 78 LEU LEU A . n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 VAL 83 80 80 VAL VAL A . n A 1 84 MSE 84 81 81 MSE MSE A . n A 1 85 THR 85 82 82 THR THR A . n A 1 86 ALA 86 83 83 ALA ALA A . n A 1 87 TYR 87 84 84 TYR TYR A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 ARG 89 86 86 ARG ARG A . n A 1 90 TRP 90 87 87 TRP TRP A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 ILE 92 89 89 ILE ILE A . n A 1 93 GLN 93 90 90 GLN GLN A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 HIS 95 92 92 HIS HIS A . n A 1 96 ARG 96 93 93 ARG ARG A . n A 1 97 ASN 97 94 94 ASN ASN A . n A 1 98 ASN 98 95 95 ASN ASN A . n A 1 99 PRO 99 96 96 PRO PRO A . n A 1 100 GLN 100 97 97 GLN GLN A . n A 1 101 LEU 101 98 98 LEU LEU A . n A 1 102 LEU 102 99 99 LEU LEU A . n A 1 103 ARG 103 100 100 ARG ARG A . n A 1 104 PHE 104 101 101 PHE PHE A . n A 1 105 TYR 105 102 102 TYR TYR A . n A 1 106 THR 106 103 103 THR THR A . n A 1 107 SER 107 104 104 SER SER A . n A 1 108 GLU 108 105 105 GLU GLU A . n A 1 109 LEU 109 106 106 LEU LEU A . n A 1 110 THR 110 107 107 THR THR A . n A 1 111 ASN 111 108 108 ASN ASN A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 PRO 114 111 111 PRO PRO A . n A 1 115 CYS 115 112 112 CYS CYS A . n A 1 116 PHE 116 113 113 PHE PHE A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 ALA 118 115 115 ALA ALA A . n A 1 119 ILE 119 116 116 ILE ILE A . n A 1 120 VAL 120 117 117 VAL VAL A . n A 1 121 SER 121 118 118 SER SER A . n A 1 122 PRO 122 119 119 PRO PRO A . n A 1 123 ALA 123 120 120 ALA ALA A . n A 1 124 ILE 124 121 121 ILE ILE A . n A 1 125 ALA 125 122 122 ALA ALA A . n A 1 126 SER 126 123 123 SER SER A . n A 1 127 VAL 127 124 124 VAL VAL A . n A 1 128 ILE 128 125 125 ILE ILE A . n A 1 129 ARG 129 126 126 ARG ARG A . n A 1 130 LEU 130 127 127 LEU LEU A . n A 1 131 LEU 131 128 128 LEU LEU A . n A 1 132 ALA 132 129 129 ALA ALA A . n A 1 133 GLU 133 130 130 GLU GLU A . n A 1 134 SER 134 131 131 SER SER A . n A 1 135 ILE 135 132 132 ILE ILE A . n A 1 136 GLU 136 133 133 GLU GLU A . n A 1 137 ALA 137 134 134 ALA ALA A . n A 1 138 GLY 138 135 135 GLY GLY A . n A 1 139 MSE 139 136 136 MSE MSE A . n A 1 140 THR 140 137 137 THR THR A . n A 1 141 ARG 141 138 138 ARG ARG A . n A 1 142 GLY 142 139 139 GLY GLY A . n A 1 143 LEU 143 140 140 LEU LEU A . n A 1 144 PHE 144 141 141 PHE PHE A . n A 1 145 ARG 145 142 142 ARG ARG A . n A 1 146 ARG 146 143 143 ARG ARG A . n A 1 147 ASP 147 144 144 ASP ASP A . n A 1 148 LEU 148 145 145 LEU LEU A . n A 1 149 HIS 149 146 146 HIS HIS A . n A 1 150 ALA 150 147 147 ALA ALA A . n A 1 151 VAL 151 148 148 VAL VAL A . n A 1 152 ASN 152 149 149 ASN ASN A . n A 1 153 SER 153 150 150 SER SER A . n A 1 154 ALA 154 151 151 ALA ALA A . n A 1 155 LEU 155 152 152 LEU LEU A . n A 1 156 ALA 156 153 153 ALA ALA A . n A 1 157 LEU 157 154 154 LEU LEU A . n A 1 158 ALA 158 155 155 ALA ALA A . n A 1 159 GLY 159 156 156 GLY GLY A . n A 1 160 MSE 160 157 157 MSE MSE A . n A 1 161 VAL 161 158 158 VAL VAL A . n A 1 162 ASN 162 159 159 ASN ASN A . n A 1 163 TYR 163 160 160 TYR TYR A . n A 1 164 PHE 164 161 161 PHE PHE A . n A 1 165 PHE 165 162 162 PHE PHE A . n A 1 166 LEU 166 163 163 LEU LEU A . n A 1 167 SER 167 164 164 SER SER A . n A 1 168 THR 168 165 165 THR THR A . n A 1 169 LEU 169 166 166 LEU LEU A . n A 1 170 ALA 170 167 167 ALA ALA A . n A 1 171 THR 171 168 168 THR THR A . n A 1 172 GLU 172 169 169 GLU GLU A . n A 1 173 GLY 173 170 170 GLY GLY A . n A 1 174 LEU 174 171 171 LEU LEU A . n A 1 175 THR 175 172 172 THR THR A . n A 1 176 SER 176 173 173 SER SER A . n A 1 177 HIS 177 174 174 HIS HIS A . n A 1 178 SER 178 175 175 SER SER A . n A 1 179 PRO 179 176 176 PRO PRO A . n A 1 180 ASP 180 177 177 ASP ASP A . n A 1 181 GLN 181 178 178 GLN GLN A . n A 1 182 ASP 182 179 179 ASP ASP A . n A 1 183 GLU 183 180 180 GLU GLU A . n A 1 184 GLU 184 181 181 GLU GLU A . n A 1 185 LEU 185 182 182 LEU LEU A . n A 1 186 ILE 186 183 183 ILE ILE A . n A 1 187 ARG 187 184 184 ARG ARG A . n A 1 188 GLN 188 185 185 GLN GLN A . n A 1 189 TYR 189 186 186 TYR TYR A . n A 1 190 VAL 190 187 187 VAL VAL A . n A 1 191 ALA 191 188 188 ALA ALA A . n A 1 192 ILE 192 189 189 ILE ILE A . n A 1 193 PHE 193 190 190 PHE PHE A . n A 1 194 THR 194 191 191 THR THR A . n A 1 195 ARG 195 192 192 ARG ARG A . n A 1 196 GLY 196 193 193 GLY GLY A . n A 1 197 ILE 197 194 194 ILE ILE A . n A 1 198 MSE 198 195 195 MSE MSE A . n A 1 199 ALA 199 196 196 ALA ALA A . n A 1 200 ASP 200 197 ? ? ? A . n A 1 201 GLY 201 198 ? ? ? A . n A 1 202 GLY 202 199 ? ? ? A . n A 1 203 ALA 203 200 ? ? ? A . n A 1 204 ALA 204 201 ? ? ? A . n A 1 205 PRO 205 202 ? ? ? A . n A 1 206 ALA 206 203 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 204 1 CL CL A . C 3 BME 1 205 1 BME BME A . D 4 EDO 1 206 1 EDO EDO A . E 4 EDO 1 207 1 EDO EDO A . F 4 EDO 1 208 1 EDO EDO A . G 5 ACY 1 209 1 ACY ACY A . H 6 HOH 1 210 1 HOH HOH A . H 6 HOH 2 211 2 HOH HOH A . H 6 HOH 3 212 3 HOH HOH A . H 6 HOH 4 213 4 HOH HOH A . H 6 HOH 5 214 5 HOH HOH A . H 6 HOH 6 215 6 HOH HOH A . H 6 HOH 7 216 7 HOH HOH A . H 6 HOH 8 217 8 HOH HOH A . H 6 HOH 9 218 9 HOH HOH A . H 6 HOH 10 219 10 HOH HOH A . H 6 HOH 11 220 11 HOH HOH A . H 6 HOH 12 221 12 HOH HOH A . H 6 HOH 13 222 13 HOH HOH A . H 6 HOH 14 223 14 HOH HOH A . H 6 HOH 15 224 15 HOH HOH A . H 6 HOH 16 225 16 HOH HOH A . H 6 HOH 17 226 17 HOH HOH A . H 6 HOH 18 227 18 HOH HOH A . H 6 HOH 19 228 19 HOH HOH A . H 6 HOH 20 229 20 HOH HOH A . H 6 HOH 21 230 21 HOH HOH A . H 6 HOH 22 231 22 HOH HOH A . H 6 HOH 23 232 23 HOH HOH A . H 6 HOH 24 233 24 HOH HOH A . H 6 HOH 25 234 25 HOH HOH A . H 6 HOH 26 235 26 HOH HOH A . H 6 HOH 27 236 27 HOH HOH A . H 6 HOH 28 237 28 HOH HOH A . H 6 HOH 29 238 29 HOH HOH A . H 6 HOH 30 239 30 HOH HOH A . H 6 HOH 31 240 31 HOH HOH A . H 6 HOH 32 241 32 HOH HOH A . H 6 HOH 33 242 33 HOH HOH A . H 6 HOH 34 243 34 HOH HOH A . H 6 HOH 35 244 35 HOH HOH A . H 6 HOH 36 245 36 HOH HOH A . H 6 HOH 37 246 37 HOH HOH A . H 6 HOH 38 247 38 HOH HOH A . H 6 HOH 39 248 39 HOH HOH A . H 6 HOH 40 249 40 HOH HOH A . H 6 HOH 41 250 41 HOH HOH A . H 6 HOH 42 251 42 HOH HOH A . H 6 HOH 43 252 43 HOH HOH A . H 6 HOH 44 253 44 HOH HOH A . H 6 HOH 45 254 45 HOH HOH A . H 6 HOH 46 255 46 HOH HOH A . H 6 HOH 47 256 47 HOH HOH A . H 6 HOH 48 257 48 HOH HOH A . H 6 HOH 49 258 49 HOH HOH A . H 6 HOH 50 259 50 HOH HOH A . H 6 HOH 51 260 51 HOH HOH A . H 6 HOH 52 261 52 HOH HOH A . H 6 HOH 53 262 53 HOH HOH A . H 6 HOH 54 263 54 HOH HOH A . H 6 HOH 55 264 55 HOH HOH A . H 6 HOH 56 265 56 HOH HOH A . H 6 HOH 57 266 57 HOH HOH A . H 6 HOH 58 267 58 HOH HOH A . H 6 HOH 59 268 59 HOH HOH A . H 6 HOH 60 269 60 HOH HOH A . H 6 HOH 61 270 61 HOH HOH A . H 6 HOH 62 271 62 HOH HOH A . H 6 HOH 63 272 63 HOH HOH A . H 6 HOH 64 273 64 HOH HOH A . H 6 HOH 65 274 65 HOH HOH A . H 6 HOH 66 275 66 HOH HOH A . H 6 HOH 67 276 67 HOH HOH A . H 6 HOH 68 277 68 HOH HOH A . H 6 HOH 69 278 69 HOH HOH A . H 6 HOH 70 279 70 HOH HOH A . H 6 HOH 71 280 71 HOH HOH A . H 6 HOH 72 281 72 HOH HOH A . H 6 HOH 73 282 73 HOH HOH A . H 6 HOH 74 283 74 HOH HOH A . H 6 HOH 75 284 75 HOH HOH A . H 6 HOH 76 285 76 HOH HOH A . H 6 HOH 77 286 77 HOH HOH A . H 6 HOH 78 287 78 HOH HOH A . H 6 HOH 79 288 79 HOH HOH A . H 6 HOH 80 289 80 HOH HOH A . H 6 HOH 81 290 81 HOH HOH A . H 6 HOH 82 291 82 HOH HOH A . H 6 HOH 83 292 83 HOH HOH A . H 6 HOH 84 293 84 HOH HOH A . H 6 HOH 85 294 85 HOH HOH A . H 6 HOH 86 295 86 HOH HOH A . H 6 HOH 87 296 87 HOH HOH A . H 6 HOH 88 297 88 HOH HOH A . H 6 HOH 89 298 89 HOH HOH A . H 6 HOH 90 299 90 HOH HOH A . H 6 HOH 91 300 91 HOH HOH A . H 6 HOH 92 301 92 HOH HOH A . H 6 HOH 93 302 93 HOH HOH A . H 6 HOH 94 303 94 HOH HOH A . H 6 HOH 95 304 95 HOH HOH A . H 6 HOH 96 305 96 HOH HOH A . H 6 HOH 97 306 97 HOH HOH A . H 6 HOH 98 307 98 HOH HOH A . H 6 HOH 99 308 99 HOH HOH A . H 6 HOH 100 309 100 HOH HOH A . H 6 HOH 101 310 101 HOH HOH A . H 6 HOH 102 311 102 HOH HOH A . H 6 HOH 103 312 103 HOH HOH A . H 6 HOH 104 313 104 HOH HOH A . H 6 HOH 105 314 105 HOH HOH A . H 6 HOH 106 315 106 HOH HOH A . H 6 HOH 107 316 107 HOH HOH A . H 6 HOH 108 317 108 HOH HOH A . H 6 HOH 109 318 109 HOH HOH A . H 6 HOH 110 319 110 HOH HOH A . H 6 HOH 111 320 111 HOH HOH A . H 6 HOH 112 321 112 HOH HOH A . H 6 HOH 113 322 113 HOH HOH A . H 6 HOH 114 323 114 HOH HOH A . H 6 HOH 115 324 115 HOH HOH A . H 6 HOH 116 325 116 HOH HOH A . H 6 HOH 117 326 117 HOH HOH A . H 6 HOH 118 327 118 HOH HOH A . H 6 HOH 119 328 119 HOH HOH A . H 6 HOH 120 329 120 HOH HOH A . H 6 HOH 121 330 121 HOH HOH A . H 6 HOH 122 331 122 HOH HOH A . H 6 HOH 123 332 123 HOH HOH A . H 6 HOH 124 333 124 HOH HOH A . H 6 HOH 125 334 125 HOH HOH A . H 6 HOH 126 335 126 HOH HOH A . H 6 HOH 127 336 127 HOH HOH A . H 6 HOH 128 337 128 HOH HOH A . H 6 HOH 129 338 129 HOH HOH A . H 6 HOH 130 339 130 HOH HOH A . H 6 HOH 131 340 131 HOH HOH A . H 6 HOH 132 341 132 HOH HOH A . H 6 HOH 133 342 133 HOH HOH A . H 6 HOH 134 343 134 HOH HOH A . H 6 HOH 135 344 135 HOH HOH A . H 6 HOH 136 345 136 HOH HOH A . H 6 HOH 137 346 137 HOH HOH A . H 6 HOH 138 347 138 HOH HOH A . H 6 HOH 139 348 139 HOH HOH A . H 6 HOH 140 349 140 HOH HOH A . H 6 HOH 141 350 141 HOH HOH A . H 6 HOH 142 351 142 HOH HOH A . H 6 HOH 143 352 143 HOH HOH A . H 6 HOH 144 353 144 HOH HOH A . H 6 HOH 145 354 145 HOH HOH A . H 6 HOH 146 355 146 HOH HOH A . H 6 HOH 147 356 147 HOH HOH A . H 6 HOH 148 357 148 HOH HOH A . H 6 HOH 149 358 149 HOH HOH A . H 6 HOH 150 359 150 HOH HOH A . H 6 HOH 151 360 151 HOH HOH A . H 6 HOH 152 361 152 HOH HOH A . H 6 HOH 153 362 153 HOH HOH A . H 6 HOH 154 363 154 HOH HOH A . H 6 HOH 155 364 155 HOH HOH A . H 6 HOH 156 365 156 HOH HOH A . H 6 HOH 157 366 157 HOH HOH A . H 6 HOH 158 367 158 HOH HOH A . H 6 HOH 159 368 159 HOH HOH A . H 6 HOH 160 369 160 HOH HOH A . H 6 HOH 161 370 161 HOH HOH A . H 6 HOH 162 371 162 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 11 ? MET SELENOMETHIONINE 2 A MSE 44 A MSE 41 ? MET SELENOMETHIONINE 3 A MSE 84 A MSE 81 ? MET SELENOMETHIONINE 4 A MSE 139 A MSE 136 ? MET SELENOMETHIONINE 5 A MSE 160 A MSE 157 ? MET SELENOMETHIONINE 6 A MSE 198 A MSE 195 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7270 ? 1 MORE -46 ? 1 'SSA (A^2)' 16050 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5000000000 0.8660254038 0.0000000000 -94.6590000000 0.8660254038 0.5000000000 0.0000000000 54.6513991312 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 276 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -23.9856 39.3277 -1.4577 0.1370 0.1654 0.1472 -0.1097 -0.0817 0.0754 5.2950 1.9158 6.2632 2.5276 0.6813 -0.7717 0.5272 -0.3610 -0.1662 -0.7146 -0.4389 -0.4724 0.3110 -0.0642 0.4294 'X-RAY DIFFRACTION' 2 ? refined -32.0346 22.0731 -7.0941 0.0011 0.0965 0.1581 -0.0005 -0.0174 0.0588 1.7087 14.3322 0.8847 4.9389 0.0196 0.2801 -0.0157 -0.1788 0.1945 0.1035 -0.2748 -1.0581 0.0712 0.1950 0.2731 'X-RAY DIFFRACTION' 3 ? refined -40.5797 11.1011 -0.7972 0.1523 0.0545 0.0382 0.0407 0.0489 0.0051 2.2132 5.1297 5.8027 1.6900 2.7058 3.8077 -0.1761 0.0154 0.1607 -0.0148 0.0025 -0.1497 0.0649 0.3296 0.2234 'X-RAY DIFFRACTION' 4 ? refined -44.2891 19.5183 -9.1245 0.0543 0.0884 0.0381 -0.0095 0.0241 -0.0099 0.9454 5.0594 0.9899 1.1984 0.1553 0.6372 -0.0114 -0.1435 0.1548 0.0781 -0.0676 -0.0691 0.1522 0.1564 0.0463 'X-RAY DIFFRACTION' 5 ? refined -51.1259 17.4668 -1.6285 0.1156 0.0829 0.1035 -0.0328 0.0529 -0.0098 1.2227 4.7022 8.8830 0.6232 0.9661 5.1046 -0.0596 -0.1590 0.2186 0.0866 -0.1175 0.1772 0.1630 0.3319 -0.3284 'X-RAY DIFFRACTION' 6 ? refined -49.5419 11.0850 8.7810 0.2498 0.0284 0.0925 0.0323 0.0884 0.0436 2.7122 0.9877 4.5024 -0.2533 -0.5877 1.7393 -0.2384 0.0637 0.1747 -0.0947 -0.3294 -0.0069 0.3405 0.6114 0.2128 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 4 A 49 ? . . . . 'X-RAY DIFFRACTION' ? 2 2 A 50 A 72 ? . . . . 'X-RAY DIFFRACTION' ? 3 3 A 73 A 96 ? . . . . 'X-RAY DIFFRACTION' ? 4 4 A 97 A 142 ? . . . . 'X-RAY DIFFRACTION' ? 5 5 A 143 A 168 ? . . . . 'X-RAY DIFFRACTION' ? 6 6 A 169 A 196 ? . . . . 'X-RAY DIFFRACTION' ? # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.loc_acentric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.R_cullis_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.loc_centric _pdbx_phasing_MAD_set.power_centric _pdbx_phasing_MAD_set.R_cullis_centric 1 1.75 50.00 16078 0.100 0.000 1.720 2021 0.100 0.000 1.000 2 1.75 50.00 12542 5.700 0.800 0.880 1704 8.300 0.660 0.800 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.loc_acentric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.R_cullis_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.loc_centric _pdbx_phasing_MAD_set_shell.power_centric _pdbx_phasing_MAD_set_shell.R_cullis_centric 1 11.25 50.00 42 0.600 0.000 1.500 37 0.400 0.000 1.000 1 6.34 11.25 237 0.600 0.000 1.480 92 0.400 0.000 1.000 1 4.41 6.34 636 0.400 0.000 1.320 154 0.300 0.000 1.000 1 3.38 4.41 1195 0.300 0.000 1.070 216 0.300 0.000 1.000 1 2.74 3.38 1926 0.200 0.000 1.550 274 0.100 0.000 1.000 1 2.31 2.74 2864 0.100 0.000 1.850 349 0.100 0.000 1.000 1 1.99 2.31 3971 0.100 0.000 3.570 423 0.000 0.000 1.000 1 1.75 1.99 5207 0.000 0.000 9.870 476 0.000 0.000 1.000 2 11.25 50.00 42 12.200 2.070 0.570 37 18.700 0.920 0.820 2 6.34 11.25 237 8.600 2.010 0.620 92 13.400 1.360 0.560 2 4.41 6.34 636 7.300 1.720 0.700 154 8.400 1.240 0.630 2 3.38 4.41 1195 7.400 1.160 0.820 215 9.300 0.850 0.720 2 2.74 3.38 1926 6.100 0.970 0.860 274 7.900 0.680 0.850 2 2.31 2.74 2864 4.700 0.800 0.900 349 6.800 0.480 0.870 2 1.99 2.31 3953 5.200 0.450 0.970 421 7.400 0.300 0.960 2 1.75 1.99 1689 5.900 0.280 0.990 162 8.100 0.180 1.000 # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso _pdbx_phasing_MAD_set_site.occupancy 1 Se -0.187 -0.050 -0.157 36.27165 0.000 2 Se -0.251 0.043 -0.323 20.27432 0.000 3 Se -0.158 0.166 -0.412 27.79353 0.000 4 Se -0.229 0.167 0.036 98.91090 0.000 5 Se -0.029 0.055 -0.351 27.78613 0.000 6 Se -0.450 -0.095 0.038 120.85499 0.000 7 Se -0.123 0.161 -0.393 25.18532 0.000 8 Se -0.482 -0.101 0.010 43.06000 0.000 9 Se -0.191 -0.054 -0.157 39.17680 -0.129 10 Se -0.251 0.044 -0.323 20.98783 -0.123 11 Se -0.158 0.166 -0.412 27.89173 -0.106 12 Se -0.227 0.168 0.035 122.24792 -0.167 13 Se -0.027 0.056 -0.351 23.47188 -0.069 14 Se -0.442 -0.097 0.039 136.77164 -0.159 15 Se -0.124 0.160 -0.393 22.45054 -0.042 16 Se -0.482 -0.100 0.008 36.58893 -0.049 # loop_ _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom _pdbx_phasing_MAD_shell.reflns_centric _pdbx_phasing_MAD_shell.fom_centric _pdbx_phasing_MAD_shell.reflns_acentric _pdbx_phasing_MAD_shell.fom_acentric 11.25 50.00 79 0.695 37 0.463 42 0.898 6.34 11.25 329 0.804 92 0.669 237 0.857 4.41 6.34 790 0.800 154 0.597 636 0.850 3.38 4.41 1411 0.728 216 0.492 1195 0.770 2.74 3.38 2200 0.694 274 0.418 1926 0.733 2.31 2.74 3213 0.625 349 0.338 2864 0.660 1.99 2.31 4394 0.423 423 0.183 3971 0.448 1.75 1.99 5683 0.175 476 0.031 5207 0.189 # _pdbx_phasing_dm.entry_id 3DEW _pdbx_phasing_dm.method 'Solvent flattening and Histogram matching' _pdbx_phasing_dm.reflns 18099 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 5.930 100.000 42.100 ? ? ? 0.879 ? ? 501 4.680 5.930 33.900 ? ? ? 0.933 ? ? 505 4.070 4.680 39.900 ? ? ? 0.919 ? ? 507 3.680 4.070 39.400 ? ? ? 0.933 ? ? 509 3.410 3.680 42.900 ? ? ? 0.917 ? ? 513 3.200 3.410 43.200 ? ? ? 0.895 ? ? 505 3.040 3.200 40.300 ? ? ? 0.919 ? ? 525 2.890 3.040 44.700 ? ? ? 0.909 ? ? 551 2.770 2.890 42.000 ? ? ? 0.919 ? ? 579 2.660 2.770 38.000 ? ? ? 0.919 ? ? 606 2.560 2.660 41.000 ? ? ? 0.920 ? ? 620 2.470 2.560 43.000 ? ? ? 0.917 ? ? 651 2.390 2.470 46.000 ? ? ? 0.897 ? ? 663 2.320 2.390 43.800 ? ? ? 0.914 ? ? 687 2.250 2.320 47.500 ? ? ? 0.901 ? ? 700 2.190 2.250 50.500 ? ? ? 0.892 ? ? 725 2.130 2.190 54.600 ? ? ? 0.890 ? ? 763 2.080 2.130 57.100 ? ? ? 0.898 ? ? 762 2.030 2.080 58.600 ? ? ? 0.872 ? ? 760 1.990 2.030 58.700 ? ? ? 0.868 ? ? 806 1.950 1.990 67.500 ? ? ? 0.876 ? ? 822 1.910 1.950 65.600 ? ? ? 0.862 ? ? 814 1.870 1.910 74.100 ? ? ? 0.811 ? ? 854 1.830 1.870 80.600 ? ? ? 0.846 ? ? 867 1.800 1.830 78.300 ? ? ? 0.818 ? ? 868 1.750 1.800 78.900 ? ? ? 0.808 ? ? 1436 # _phasing.method MAD # _phasing_MAD.entry_id 3DEW _phasing_MAD.pdbx_d_res_high 1.75 _phasing_MAD.pdbx_d_res_low 50.00 _phasing_MAD.pdbx_reflns 18099 _phasing_MAD.pdbx_fom 0.462 _phasing_MAD.pdbx_reflns_centric 2021 _phasing_MAD.pdbx_fom_centric 0.298 _phasing_MAD.pdbx_reflns_acentric 16078 _phasing_MAD.pdbx_fom_acentric 0.483 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 MLPHARE . ? other 'Z.Otwinowski or E.Dodson' 'ccp4@dl.ac.uk, ccp4@yorvic.york.ac.uk' phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 DM 5.0 ? program 'K. Cowtan' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? 9 HKL-3000 . ? ? ? ? phasing ? ? ? 10 SHELXD . ? ? ? ? phasing ? ? ? 11 SHELXE . ? ? ? ? 'model building' ? ? ? 12 SOLVE . ? ? ? ? phasing ? ? ? 13 RESOLVE . ? ? ? ? phasing ? ? ? 14 ARP/wARP . ? ? ? ? 'model building' ? ? ? 15 CCP4 . ? ? ? ? phasing ? ? ? 16 O . ? ? ? ? 'model building' ? ? ? 17 Coot . ? ? ? ? 'model building' ? ? ? 18 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 112 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 S2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 BME _pdbx_validate_close_contact.auth_seq_id_2 205 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.03 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 108 ? B -153.77 61.13 2 1 ILE A 116 ? ? -124.57 -52.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 7 ? CG ? A ARG 10 CG 2 1 Y 1 A ARG 7 ? CD ? A ARG 10 CD 3 1 Y 1 A ARG 7 ? NE ? A ARG 10 NE 4 1 Y 1 A ARG 7 ? CZ ? A ARG 10 CZ 5 1 Y 1 A ARG 7 ? NH1 ? A ARG 10 NH1 6 1 Y 1 A ARG 7 ? NH2 ? A ARG 10 NH2 7 1 Y 1 A GLN 33 ? CG ? A GLN 36 CG 8 1 Y 1 A GLN 33 ? CD ? A GLN 36 CD 9 1 Y 1 A GLN 33 ? OE1 ? A GLN 36 OE1 10 1 Y 1 A GLN 33 ? NE2 ? A GLN 36 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A THR 2 ? A THR 5 6 1 Y 1 A ARG 3 ? A ARG 6 7 1 Y 1 A ALA 4 ? A ALA 7 8 1 Y 1 A ASP 197 ? A ASP 200 9 1 Y 1 A GLY 198 ? A GLY 201 10 1 Y 1 A GLY 199 ? A GLY 202 11 1 Y 1 A ALA 200 ? A ALA 203 12 1 Y 1 A ALA 201 ? A ALA 204 13 1 Y 1 A PRO 202 ? A PRO 205 14 1 Y 1 A ALA 203 ? A ALA 206 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 BETA-MERCAPTOETHANOL BME 4 1,2-ETHANEDIOL EDO 5 'ACETIC ACID' ACY 6 water HOH #