HEADER OXIDOREDUCTASE 30-JUN-08 3DMB TITLE CRYSTAL STRUCTURE OF A PUTATIVE GENERAL STRESS FAMILY PROTEIN TITLE 2 (XCC2264) FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 2.30 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GENERAL STRESS PROTEIN 26 WITH A PNP-OXIDASE LIKE COMPND 3 FOLD; COMPND 4 CHAIN: A, B, C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 GENE: NP_637619.1, XCC2264; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PNP-OXIDASE LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3DMB 1 SEQADV REVDAT 6 24-JUL-19 3DMB 1 REMARK LINK REVDAT 5 25-OCT-17 3DMB 1 REMARK REVDAT 4 13-JUL-11 3DMB 1 VERSN REVDAT 3 23-MAR-11 3DMB 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3DMB 1 VERSN REVDAT 1 26-AUG-08 3DMB 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GENERAL STRESS PROTEIN 26 JRNL TITL 2 WITH A PNP-OXIDASE LIKE FOLD (NP_637619.1) FROM XANTHOMONAS JRNL TITL 3 CAMPESTRIS AT 2.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.54000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.381 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.407 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3316 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2241 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4496 ; 1.671 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5460 ; 1.281 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 3.749 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;34.754 ;24.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;13.173 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;10.207 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3733 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 528 ; 0.162 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1991 ; 0.138 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1530 ; 0.150 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1770 ; 0.070 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 107 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.077 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2402 ; 1.125 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 883 ; 0.235 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3328 ; 1.763 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 3.073 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1164 ; 4.440 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 25 5 REMARK 3 1 B 5 B 25 5 REMARK 3 1 C 5 C 25 5 REMARK 3 2 A 34 A 132 5 REMARK 3 2 B 34 B 132 5 REMARK 3 2 C 34 C 132 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 694 ; 0.350 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 694 ; 0.330 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 694 ; 0.280 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 807 ; 0.830 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 807 ; 0.660 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 807 ; 0.670 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 694 ; 0.790 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 694 ; 0.740 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 694 ; 0.710 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 807 ; 2.180 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 807 ; 1.820 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 807 ; 1.840 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8380 22.9190 15.7480 REMARK 3 T TENSOR REMARK 3 T11: -0.1911 T22: -0.2845 REMARK 3 T33: -0.2973 T12: 0.0192 REMARK 3 T13: -0.0078 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 8.2469 L22: 0.9783 REMARK 3 L33: 3.4273 L12: 1.4722 REMARK 3 L13: 1.0181 L23: 0.3035 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.2345 S13: -0.2080 REMARK 3 S21: -0.0659 S22: 0.0091 S23: 0.0363 REMARK 3 S31: 0.2098 S32: -0.1050 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 145 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2410 21.2690 16.9090 REMARK 3 T TENSOR REMARK 3 T11: -0.1705 T22: -0.0756 REMARK 3 T33: -0.1589 T12: 0.0576 REMARK 3 T13: 0.0580 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.1748 L22: 0.9104 REMARK 3 L33: 4.7071 L12: 0.0879 REMARK 3 L13: 1.8921 L23: -0.4450 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: 0.2244 S13: -0.0845 REMARK 3 S21: -0.0736 S22: -0.0107 S23: -0.2336 REMARK 3 S31: 0.1496 S32: 0.8817 S33: 0.0445 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 24 REMARK 3 RESIDUE RANGE : C 33 C 145 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3570 52.4300 9.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.4092 T22: -0.2317 REMARK 3 T33: -0.0864 T12: -0.2007 REMARK 3 T13: 0.0293 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.3114 L22: 3.0589 REMARK 3 L33: 8.8336 L12: 0.8513 REMARK 3 L13: -0.0890 L23: 2.2963 REMARK 3 S TENSOR REMARK 3 S11: 0.3686 S12: -0.0292 S13: 0.1318 REMARK 3 S21: 0.3207 S22: -0.3648 S23: 0.0896 REMARK 3 S31: -1.8754 S32: -0.0964 S33: -0.0037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 4 REMARK 4 3DMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97862,0.91837,0.97939 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.665 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2000M K2HPO4, 0.8000M NA2HPO4, 0.1M REMARK 280 ACETATE PH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.56000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.78000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.78000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE REMARK 300 ASSIGNMENT OF A HEXAMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 167 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 160 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 146 REMARK 465 GLY B 0 REMARK 465 VAL B 146 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 ALA C 2 REMARK 465 ASP C 3 REMARK 465 LEU C 25 REMARK 465 ASP C 26 REMARK 465 GLY C 27 REMARK 465 VAL C 28 REMARK 465 GLU C 29 REMARK 465 ASP C 30 REMARK 465 GLY C 31 REMARK 465 HIS C 32 REMARK 465 VAL C 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 LYS A 54 CD CE NZ REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS B 10 CD CE NZ REMARK 470 ARG B 34 CD NE CZ NH1 NH2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 ARG C 19 CZ NH1 NH2 REMARK 470 ARG C 66 CD NE CZ NH1 NH2 REMARK 470 GLU C 109 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 19 -42.96 68.82 REMARK 500 GLU A 29 -72.23 -66.29 REMARK 500 LYS A 116 42.92 -81.71 REMARK 500 ARG B 19 -39.42 69.65 REMARK 500 ASP B 90 71.96 -158.29 REMARK 500 ARG C 19 -37.38 66.08 REMARK 500 THR C 52 -157.95 -148.10 REMARK 500 ASP C 90 67.55 -151.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 380344 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT CONTAINS AMINO ACIDS 1-146 OF THE FULL LENGTH PROTEIN REMARK 999 OF 162 RESIDUES. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3DMB A 1 146 UNP Q8P8H7 Q8P8H7_XANCP 1 146 DBREF 3DMB B 1 146 UNP Q8P8H7 Q8P8H7_XANCP 1 146 DBREF 3DMB C 1 146 UNP Q8P8H7 Q8P8H7_XANCP 1 146 SEQADV 3DMB GLY A 0 UNP Q8P8H7 EXPRESSION TAG SEQADV 3DMB GLY B 0 UNP Q8P8H7 EXPRESSION TAG SEQADV 3DMB GLY C 0 UNP Q8P8H7 EXPRESSION TAG SEQRES 1 A 147 GLY MSE ALA ASP PRO LYS GLU LEU GLN ASP LYS PHE TRP SEQRES 2 A 147 LYS ALA LEU LYS SER ASP ARG THR VAL MSE LEU GLY LEU SEQRES 3 A 147 ASP GLY VAL GLU ASP GLY HIS ALA ARG PRO MSE THR ALA SEQRES 4 A 147 GLN ILE GLU GLY ASP SER GLY GLY PRO ILE TRP PHE PHE SEQRES 5 A 147 THR SER LYS ASP ASN ALA LEU ILE ALA MSE LEU GLY GLN SEQRES 6 A 147 GLY ARG ARG VAL ILE GLY ALA PHE SER SER LYS GLY HIS SEQRES 7 A 147 ASP LEU PHE ALA SER ILE SER GLY SER LEU ARG GLU ASP SEQRES 8 A 147 THR ASP PRO ALA VAL VAL ASP ARG LEU TRP ASN PRO TYR SEQRES 9 A 147 VAL ALA ALA TRP TYR GLU GLY GLY LYS ASP ASP PRO LYS SEQRES 10 A 147 LEU ALA LEU LEU ARG LEU ASP ALA ASP HIS ALA GLN ILE SEQRES 11 A 147 TRP LEU ASN GLY SER SER LEU LEU ALA GLY ILE LYS VAL SEQRES 12 A 147 LEU LEU GLY VAL SEQRES 1 B 147 GLY MSE ALA ASP PRO LYS GLU LEU GLN ASP LYS PHE TRP SEQRES 2 B 147 LYS ALA LEU LYS SER ASP ARG THR VAL MSE LEU GLY LEU SEQRES 3 B 147 ASP GLY VAL GLU ASP GLY HIS ALA ARG PRO MSE THR ALA SEQRES 4 B 147 GLN ILE GLU GLY ASP SER GLY GLY PRO ILE TRP PHE PHE SEQRES 5 B 147 THR SER LYS ASP ASN ALA LEU ILE ALA MSE LEU GLY GLN SEQRES 6 B 147 GLY ARG ARG VAL ILE GLY ALA PHE SER SER LYS GLY HIS SEQRES 7 B 147 ASP LEU PHE ALA SER ILE SER GLY SER LEU ARG GLU ASP SEQRES 8 B 147 THR ASP PRO ALA VAL VAL ASP ARG LEU TRP ASN PRO TYR SEQRES 9 B 147 VAL ALA ALA TRP TYR GLU GLY GLY LYS ASP ASP PRO LYS SEQRES 10 B 147 LEU ALA LEU LEU ARG LEU ASP ALA ASP HIS ALA GLN ILE SEQRES 11 B 147 TRP LEU ASN GLY SER SER LEU LEU ALA GLY ILE LYS VAL SEQRES 12 B 147 LEU LEU GLY VAL SEQRES 1 C 147 GLY MSE ALA ASP PRO LYS GLU LEU GLN ASP LYS PHE TRP SEQRES 2 C 147 LYS ALA LEU LYS SER ASP ARG THR VAL MSE LEU GLY LEU SEQRES 3 C 147 ASP GLY VAL GLU ASP GLY HIS ALA ARG PRO MSE THR ALA SEQRES 4 C 147 GLN ILE GLU GLY ASP SER GLY GLY PRO ILE TRP PHE PHE SEQRES 5 C 147 THR SER LYS ASP ASN ALA LEU ILE ALA MSE LEU GLY GLN SEQRES 6 C 147 GLY ARG ARG VAL ILE GLY ALA PHE SER SER LYS GLY HIS SEQRES 7 C 147 ASP LEU PHE ALA SER ILE SER GLY SER LEU ARG GLU ASP SEQRES 8 C 147 THR ASP PRO ALA VAL VAL ASP ARG LEU TRP ASN PRO TYR SEQRES 9 C 147 VAL ALA ALA TRP TYR GLU GLY GLY LYS ASP ASP PRO LYS SEQRES 10 C 147 LEU ALA LEU LEU ARG LEU ASP ALA ASP HIS ALA GLN ILE SEQRES 11 C 147 TRP LEU ASN GLY SER SER LEU LEU ALA GLY ILE LYS VAL SEQRES 12 C 147 LEU LEU GLY VAL MODRES 3DMB MSE A 1 MET SELENOMETHIONINE MODRES 3DMB MSE A 22 MET SELENOMETHIONINE MODRES 3DMB MSE A 36 MET SELENOMETHIONINE MODRES 3DMB MSE A 61 MET SELENOMETHIONINE MODRES 3DMB MSE B 1 MET SELENOMETHIONINE MODRES 3DMB MSE B 22 MET SELENOMETHIONINE MODRES 3DMB MSE B 36 MET SELENOMETHIONINE MODRES 3DMB MSE B 61 MET SELENOMETHIONINE MODRES 3DMB MSE C 22 MET SELENOMETHIONINE MODRES 3DMB MSE C 36 MET SELENOMETHIONINE MODRES 3DMB MSE C 61 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 22 13 HET MSE A 36 8 HET MSE A 61 13 HET MSE B 1 8 HET MSE B 22 8 HET MSE B 36 8 HET MSE B 61 8 HET MSE C 22 13 HET MSE C 36 8 HET MSE C 61 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 4 HOH *64(H2 O) HELIX 1 1 ASP A 3 ARG A 19 1 17 HELIX 2 2 LEU A 58 LEU A 62 5 5 HELIX 3 3 ASP A 92 TRP A 100 1 9 HELIX 4 4 ASN A 101 TYR A 108 1 8 HELIX 5 5 GLY A 110 ASP A 114 5 5 HELIX 6 6 PRO B 4 ARG B 19 1 16 HELIX 7 7 VAL B 28 HIS B 32 5 5 HELIX 8 8 ALA B 57 GLY B 63 1 7 HELIX 9 9 ASP B 92 TRP B 100 1 9 HELIX 10 10 ASN B 101 TRP B 107 1 7 HELIX 11 11 GLY B 110 ASP B 114 5 5 HELIX 12 12 PRO C 4 ARG C 19 1 16 HELIX 13 13 ALA C 57 GLY C 63 1 7 HELIX 14 14 ASP C 92 TRP C 100 1 9 HELIX 15 15 ASN C 101 ALA C 106 1 6 HELIX 16 16 GLY C 110 ASP C 114 5 5 SHEET 1 A 7 THR A 20 LEU A 25 0 SHEET 2 A 7 ARG A 34 GLN A 39 -1 O MSE A 36 N VAL A 21 SHEET 3 A 7 ILE A 48 THR A 52 -1 O TRP A 49 N GLN A 39 SHEET 4 A 7 ALA A 118 LEU A 131 -1 O ALA A 118 N THR A 52 SHEET 5 A 7 LEU A 79 GLU A 89 -1 N ARG A 88 O ARG A 121 SHEET 6 A 7 ARG A 66 SER A 73 -1 N PHE A 72 O ALA A 81 SHEET 7 A 7 THR A 20 LEU A 25 -1 N MSE A 22 O ALA A 71 SHEET 1 B 6 ARG B 34 THR B 37 0 SHEET 2 B 6 THR B 20 LEU B 25 -1 N LEU B 23 O ARG B 34 SHEET 3 B 6 ARG B 66 SER B 73 -1 O ALA B 71 N MSE B 22 SHEET 4 B 6 LEU B 79 GLU B 89 -1 O ILE B 83 N GLY B 70 SHEET 5 B 6 LEU B 117 LEU B 131 -1 O ARG B 121 N ARG B 88 SHEET 6 B 6 ILE B 48 SER B 53 -1 N THR B 52 O ALA B 118 SHEET 1 C 7 THR C 20 LEU C 23 0 SHEET 2 C 7 ARG C 34 GLN C 39 -1 O MSE C 36 N VAL C 21 SHEET 3 C 7 ILE C 48 SER C 53 -1 O TRP C 49 N GLN C 39 SHEET 4 C 7 LEU C 117 LEU C 131 -1 O LEU C 122 N ILE C 48 SHEET 5 C 7 LEU C 79 GLU C 89 -1 N SER C 86 O ASP C 123 SHEET 6 C 7 ARG C 66 SER C 73 -1 N PHE C 72 O ALA C 81 SHEET 7 C 7 THR C 20 LEU C 23 -1 N MSE C 22 O ALA C 71 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.34 LINK C VAL A 21 N MSE A 22 1555 1555 1.34 LINK C MSE A 22 N LEU A 23 1555 1555 1.33 LINK C PRO A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N THR A 37 1555 1555 1.33 LINK C ALA A 60 N MSE A 61 1555 1555 1.34 LINK C MSE A 61 N LEU A 62 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.34 LINK C VAL B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N LEU B 23 1555 1555 1.33 LINK C PRO B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N THR B 37 1555 1555 1.33 LINK C ALA B 60 N MSE B 61 1555 1555 1.34 LINK C MSE B 61 N LEU B 62 1555 1555 1.32 LINK C VAL C 21 N MSE C 22 1555 1555 1.33 LINK C MSE C 22 N LEU C 23 1555 1555 1.34 LINK C PRO C 35 N MSE C 36 1555 1555 1.34 LINK C MSE C 36 N THR C 37 1555 1555 1.33 LINK C ALA C 60 N MSE C 61 1555 1555 1.33 LINK C MSE C 61 N LEU C 62 1555 1555 1.34 CISPEP 1 GLY A 46 PRO A 47 0 -0.09 CISPEP 2 GLY B 46 PRO B 47 0 0.19 CISPEP 3 GLY C 46 PRO C 47 0 -2.64 CRYST1 105.320 105.320 68.340 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009495 0.005482 0.000000 0.00000 SCALE2 0.000000 0.010964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014633 0.00000