data_3DYR # _entry.id 3DYR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DYR pdb_00003dyr 10.2210/pdb3dyr/pdb RCSB RCSB048657 ? ? WWPDB D_1000048657 ? ? # _pdbx_database_status.entry_id 3DYR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, G.' 1 'Bardwell, J.C.A.' 2 'Xu, Z.' 3 # _citation.id primary _citation.title 'Properties of the thioredoxin fold superfamily are modulated by a single amino acid residue.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 10150 _citation.page_last 10159 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19181668 _citation.pdbx_database_id_DOI 10.1074/jbc.M809509200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ren, G.' 1 ? primary 'Stephan, D.' 2 ? primary 'Xu, Z.' 3 ? primary 'Zheng, Y.' 4 ? primary 'Tang, D.' 5 ? primary 'Harrison, R.S.' 6 ? primary 'Kurz, M.' 7 ? primary 'Jarrott, R.' 8 ? primary 'Shouldice, S.R.' 9 ? primary 'Hiniker, A.' 10 ? primary 'Martin, J.L.' 11 ? primary 'Heras, B.' 12 ? primary 'Bardwell, J.C.' 13 ? # _cell.length_a 58.790 _cell.length_b 39.390 _cell.length_c 90.550 _cell.angle_alpha 90.000 _cell.angle_beta 96.630 _cell.angle_gamma 90.000 _cell.entry_id 3DYR _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3DYR _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Thioredoxin-1 11874.540 2 ? I76T ? ? 2 water nat water 18.015 135 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Trx-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLL LFKNGEVAATKVGALSKGQLKEFLDANLAAA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLL LFKNGEVAATKVGALSKGQLKEFLDANLAAA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 LYS n 1 5 ILE n 1 6 ILE n 1 7 HIS n 1 8 LEU n 1 9 THR n 1 10 ASP n 1 11 ASP n 1 12 SER n 1 13 PHE n 1 14 ASP n 1 15 THR n 1 16 ASP n 1 17 VAL n 1 18 LEU n 1 19 LYS n 1 20 ALA n 1 21 ASP n 1 22 GLY n 1 23 ALA n 1 24 ILE n 1 25 LEU n 1 26 VAL n 1 27 ASP n 1 28 PHE n 1 29 TRP n 1 30 ALA n 1 31 GLU n 1 32 TRP n 1 33 CYS n 1 34 GLY n 1 35 PRO n 1 36 CYS n 1 37 LYS n 1 38 MET n 1 39 ILE n 1 40 ALA n 1 41 PRO n 1 42 ILE n 1 43 LEU n 1 44 ASP n 1 45 GLU n 1 46 ILE n 1 47 ALA n 1 48 ASP n 1 49 GLU n 1 50 TYR n 1 51 GLN n 1 52 GLY n 1 53 LYS n 1 54 LEU n 1 55 THR n 1 56 VAL n 1 57 ALA n 1 58 LYS n 1 59 LEU n 1 60 ASN n 1 61 ILE n 1 62 ASP n 1 63 GLN n 1 64 ASN n 1 65 PRO n 1 66 GLY n 1 67 THR n 1 68 ALA n 1 69 PRO n 1 70 LYS n 1 71 TYR n 1 72 GLY n 1 73 ILE n 1 74 ARG n 1 75 GLY n 1 76 THR n 1 77 PRO n 1 78 THR n 1 79 LEU n 1 80 LEU n 1 81 LEU n 1 82 PHE n 1 83 LYS n 1 84 ASN n 1 85 GLY n 1 86 GLU n 1 87 VAL n 1 88 ALA n 1 89 ALA n 1 90 THR n 1 91 LYS n 1 92 VAL n 1 93 GLY n 1 94 ALA n 1 95 LEU n 1 96 SER n 1 97 LYS n 1 98 GLY n 1 99 GLN n 1 100 LEU n 1 101 LYS n 1 102 GLU n 1 103 PHE n 1 104 LEU n 1 105 ASP n 1 106 ALA n 1 107 ASN n 1 108 LEU n 1 109 ALA n 1 110 ALA n 1 111 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'trxA, fipA, tsnC, b3781, JW5856' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THIO_ECOLI _struct_ref.pdbx_db_accession P0AA25 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DYR A 2 ? 109 ? P0AA25 2 ? 109 ? 2 109 2 1 3DYR B 2 ? 109 ? P0AA25 2 ? 109 ? 2 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DYR GLY A 1 ? UNP P0AA25 ? ? 'expression tag' 1 1 1 3DYR THR A 76 ? UNP P0AA25 ILE 76 'engineered mutation' 76 2 1 3DYR ALA A 110 ? UNP P0AA25 ? ? 'expression tag' 110 3 1 3DYR ALA A 111 ? UNP P0AA25 ? ? 'expression tag' 111 4 2 3DYR GLY B 1 ? UNP P0AA25 ? ? 'expression tag' 1 5 2 3DYR THR B 76 ? UNP P0AA25 ILE 76 'engineered mutation' 76 6 2 3DYR ALA B 110 ? UNP P0AA25 ? ? 'expression tag' 110 7 2 3DYR ALA B 111 ? UNP P0AA25 ? ? 'expression tag' 111 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3DYR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-04-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3DYR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 13739 _reflns.number_all ? _reflns.percent_possible_obs 97.000 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.200 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.00 2.07 94.70 0.249 ? ? 3.10 ? ? ? ? ? ? ? 1 2.07 2.15 95.70 0.196 ? ? 3.20 ? ? ? ? ? ? ? 2 2.15 2.25 96.50 0.148 ? ? 3.20 ? ? ? ? ? ? ? 3 2.25 2.37 96.60 0.116 ? ? 3.20 ? ? ? ? ? ? ? 4 2.37 2.52 97.30 0.094 ? ? 3.20 ? ? ? ? ? ? ? 5 2.52 2.71 97.20 0.075 ? ? 3.30 ? ? ? ? ? ? ? 6 2.71 2.99 97.40 0.064 ? ? 3.30 ? ? ? ? ? ? ? 7 2.99 3.42 98.20 0.051 ? ? 3.30 ? ? ? ? ? ? ? 8 3.42 4.31 98.10 0.046 ? ? 3.20 ? ? ? ? ? ? ? 9 4.31 50.00 98.20 0.048 ? ? 3.20 ? ? ? ? ? ? ? 10 # _refine.entry_id 3DYR _refine.ls_number_reflns_obs 13345 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.649 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 94.14 _refine.ls_R_factor_obs 0.2544 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2512 _refine.ls_R_factor_R_free 0.2896 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.03 _refine.ls_number_reflns_R_free 1071 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 26.229 _refine.aniso_B[1][1] -3.378 _refine.aniso_B[2][2] -1.491 _refine.aniso_B[3][3] 4.869 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 2.172 _refine.aniso_B[2][3] -0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.363 _refine.solvent_model_param_bsol 63.456 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.41 _refine.pdbx_overall_phase_error 30.60 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1598 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 1733 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 25.649 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1632 'X-RAY DIFFRACTION' ? f_angle_d 1.038 ? ? 2222 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.898 ? ? 564 'X-RAY DIFFRACTION' ? f_chiral_restr 0.064 ? ? 265 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 286 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 8 2.0 2.089 1429 0.259 88.000 0.348 . . 129 1558 . . . 'X-RAY DIFFRACTION' 8 2.089 2.200 1470 0.241 91.000 0.346 . . 125 1595 . . . 'X-RAY DIFFRACTION' 8 2.200 2.337 1498 0.239 93.000 0.327 . . 128 1626 . . . 'X-RAY DIFFRACTION' 8 2.337 2.518 1528 0.242 94.000 0.331 . . 138 1666 . . . 'X-RAY DIFFRACTION' 8 2.518 2.771 1502 0.262 94.000 0.328 . . 136 1638 . . . 'X-RAY DIFFRACTION' 8 2.771 3.171 1568 0.262 97.000 0.291 . . 141 1709 . . . 'X-RAY DIFFRACTION' 8 3.171 3.993 1626 0.229 98.000 0.241 . . 122 1748 . . . 'X-RAY DIFFRACTION' 8 3.993 25.651 1653 0.249 98.000 0.243 . . 152 1805 . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3DYR _struct.title 'Crystal structure of E. coli thioredoxin mutant I76T in its oxidized form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DYR _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'mutant protein, Electron transport, Host-virus interaction, Redox-active center, Transport' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? VAL A 17 ? SER A 12 VAL A 17 1 ? 6 HELX_P HELX_P2 2 CYS A 33 ? TYR A 50 ? CYS A 33 TYR A 50 1 ? 18 HELX_P HELX_P3 3 GLY A 66 ? TYR A 71 ? GLY A 66 TYR A 71 1 ? 6 HELX_P HELX_P4 4 SER A 96 ? ALA A 110 ? SER A 96 ALA A 110 1 ? 15 HELX_P HELX_P5 5 SER B 12 ? VAL B 17 ? SER B 12 VAL B 17 1 ? 6 HELX_P HELX_P6 6 CYS B 33 ? TYR B 50 ? CYS B 33 TYR B 50 1 ? 18 HELX_P HELX_P7 7 THR B 67 ? GLY B 72 ? THR B 67 GLY B 72 5 ? 6 HELX_P HELX_P8 8 SER B 96 ? ALA B 109 ? SER B 96 ALA B 109 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 33 A CYS 36 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 33 SG ? ? ? 1_555 B CYS 36 SG ? ? B CYS 33 B CYS 36 1_555 ? ? ? ? ? ? ? 2.035 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 76 A . ? THR 76 A PRO 77 A ? PRO 77 A 1 -0.95 2 THR 76 B . ? THR 76 B PRO 77 B ? PRO 77 B 1 -4.49 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 6 ? LEU A 8 ? ILE A 6 LEU A 8 A 2 THR A 55 ? ASN A 60 ? THR A 55 ASN A 60 A 3 ILE A 24 ? TRP A 29 ? ILE A 24 TRP A 29 A 4 THR A 78 ? LYS A 83 ? THR A 78 LYS A 83 A 5 GLU A 86 ? VAL A 92 ? GLU A 86 VAL A 92 B 1 ILE B 6 ? HIS B 7 ? ILE B 6 HIS B 7 B 2 LEU B 54 ? ASN B 60 ? LEU B 54 ASN B 60 B 3 ALA B 23 ? TRP B 29 ? ALA B 23 TRP B 29 B 4 THR B 78 ? LYS B 83 ? THR B 78 LYS B 83 B 5 GLU B 86 ? VAL B 92 ? GLU B 86 VAL B 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 6 O LYS A 58 ? O LYS A 58 A 2 3 O ALA A 57 ? O ALA A 57 N LEU A 25 ? N LEU A 25 A 3 4 N ILE A 24 ? N ILE A 24 O PHE A 82 ? O PHE A 82 A 4 5 N LEU A 81 ? N LEU A 81 O ALA A 88 ? O ALA A 88 B 1 2 N ILE B 6 ? N ILE B 6 O VAL B 56 ? O VAL B 56 B 2 3 O ALA B 57 ? O ALA B 57 N ASP B 27 ? N ASP B 27 B 3 4 N PHE B 28 ? N PHE B 28 O THR B 78 ? O THR B 78 B 4 5 N LYS B 83 ? N LYS B 83 O GLU B 86 ? O GLU B 86 # _atom_sites.entry_id 3DYR _atom_sites.fract_transf_matrix[1][1] 0.017010 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001977 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025387 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011118 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ASP 21 21 21 ASP ALA A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 LYS 53 53 53 LYS ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 LYS 97 97 97 LYS SER A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LYS 101 101 101 LYS SER A . n A 1 102 GLU 102 102 102 GLU ALA A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ALA 111 111 111 ALA ALA A . n B 1 1 GLY 1 1 ? ? ? B . n B 1 2 SER 2 2 ? ? ? B . n B 1 3 ASP 3 3 3 ASP ALA B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 HIS 7 7 7 HIS SER B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 THR 9 9 9 THR THR B . n B 1 10 ASP 10 10 10 ASP ASP B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 SER 12 12 12 SER SER B . n B 1 13 PHE 13 13 13 PHE PHE B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 ASP 16 16 16 ASP ASP B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 LYS 19 19 19 LYS ALA B . n B 1 20 ALA 20 20 20 ALA ALA B . n B 1 21 ASP 21 21 21 ASP ALA B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 ASP 27 27 27 ASP ASP B . n B 1 28 PHE 28 28 28 PHE PHE B . n B 1 29 TRP 29 29 29 TRP TRP B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 TRP 32 32 32 TRP TRP B . n B 1 33 CYS 33 33 33 CYS CYS B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 PRO 35 35 35 PRO PRO B . n B 1 36 CYS 36 36 36 CYS CYS B . n B 1 37 LYS 37 37 37 LYS LYS B . n B 1 38 MET 38 38 38 MET MET B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 PRO 41 41 41 PRO PRO B . n B 1 42 ILE 42 42 42 ILE ILE B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 ILE 46 46 46 ILE ILE B . n B 1 47 ALA 47 47 47 ALA ALA B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 TYR 50 50 50 TYR TYR B . n B 1 51 GLN 51 51 51 GLN ALA B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 LYS 53 53 53 LYS ALA B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 THR 55 55 55 THR THR B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ALA 57 57 57 ALA ALA B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 ASN 60 60 60 ASN ASN B . n B 1 61 ILE 61 61 61 ILE ILE B . n B 1 62 ASP 62 62 62 ASP ASP B . n B 1 63 GLN 63 63 63 GLN GLN B . n B 1 64 ASN 64 64 64 ASN ASN B . n B 1 65 PRO 65 65 65 PRO PRO B . n B 1 66 GLY 66 66 66 GLY GLY B . n B 1 67 THR 67 67 67 THR THR B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 PRO 69 69 69 PRO PRO B . n B 1 70 LYS 70 70 70 LYS ALA B . n B 1 71 TYR 71 71 71 TYR TYR B . n B 1 72 GLY 72 72 72 GLY GLY B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 ARG 74 74 74 ARG ARG B . n B 1 75 GLY 75 75 75 GLY GLY B . n B 1 76 THR 76 76 76 THR THR B . n B 1 77 PRO 77 77 77 PRO PRO B . n B 1 78 THR 78 78 78 THR THR B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 PHE 82 82 82 PHE PHE B . n B 1 83 LYS 83 83 83 LYS ALA B . n B 1 84 ASN 84 84 84 ASN ASN B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 GLU 86 86 86 GLU GLU B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 ALA 88 88 88 ALA ALA B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 THR 90 90 90 THR THR B . n B 1 91 LYS 91 91 91 LYS LYS B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 GLY 93 93 93 GLY GLY B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 LEU 95 95 95 LEU LEU B . n B 1 96 SER 96 96 96 SER SER B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 GLY 98 98 98 GLY GLY B . n B 1 99 GLN 99 99 99 GLN GLN B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 LYS 101 101 101 LYS LYS B . n B 1 102 GLU 102 102 102 GLU GLU B . n B 1 103 PHE 103 103 103 PHE PHE B . n B 1 104 LEU 104 104 104 LEU LEU B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ALA 106 106 106 ALA ALA B . n B 1 107 ASN 107 107 107 ASN ASN B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 ALA 109 109 109 ALA ALA B . n B 1 110 ALA 110 110 ? ? ? B . n B 1 111 ALA 111 111 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 112 2 HOH HOH A . C 2 HOH 2 113 3 HOH HOH A . C 2 HOH 3 114 4 HOH HOH A . C 2 HOH 4 115 5 HOH HOH A . C 2 HOH 5 116 9 HOH HOH A . C 2 HOH 6 117 10 HOH HOH A . C 2 HOH 7 118 11 HOH HOH A . C 2 HOH 8 119 12 HOH HOH A . C 2 HOH 9 120 13 HOH HOH A . C 2 HOH 10 121 14 HOH HOH A . C 2 HOH 11 122 16 HOH HOH A . C 2 HOH 12 123 19 HOH HOH A . C 2 HOH 13 124 20 HOH HOH A . C 2 HOH 14 125 21 HOH HOH A . C 2 HOH 15 126 22 HOH HOH A . C 2 HOH 16 127 23 HOH HOH A . C 2 HOH 17 128 24 HOH HOH A . C 2 HOH 18 129 26 HOH HOH A . C 2 HOH 19 130 28 HOH HOH A . C 2 HOH 20 131 30 HOH HOH A . C 2 HOH 21 133 34 HOH HOH A . C 2 HOH 22 134 35 HOH HOH A . C 2 HOH 23 135 36 HOH HOH A . C 2 HOH 24 136 39 HOH HOH A . C 2 HOH 25 137 40 HOH HOH A . C 2 HOH 26 138 42 HOH HOH A . C 2 HOH 27 139 45 HOH HOH A . C 2 HOH 28 140 47 HOH HOH A . C 2 HOH 29 141 48 HOH HOH A . C 2 HOH 30 142 49 HOH HOH A . C 2 HOH 31 143 50 HOH HOH A . C 2 HOH 32 144 52 HOH HOH A . C 2 HOH 33 145 53 HOH HOH A . C 2 HOH 34 146 54 HOH HOH A . C 2 HOH 35 147 55 HOH HOH A . C 2 HOH 36 148 57 HOH HOH A . C 2 HOH 37 149 58 HOH HOH A . C 2 HOH 38 150 62 HOH HOH A . C 2 HOH 39 151 68 HOH HOH A . C 2 HOH 40 152 69 HOH HOH A . C 2 HOH 41 153 70 HOH HOH A . C 2 HOH 42 154 71 HOH HOH A . C 2 HOH 43 155 74 HOH HOH A . C 2 HOH 44 156 75 HOH HOH A . C 2 HOH 45 157 78 HOH HOH A . C 2 HOH 46 158 79 HOH HOH A . C 2 HOH 47 159 80 HOH HOH A . C 2 HOH 48 160 82 HOH HOH A . C 2 HOH 49 161 84 HOH HOH A . C 2 HOH 50 162 85 HOH HOH A . C 2 HOH 51 163 86 HOH HOH A . C 2 HOH 52 164 87 HOH HOH A . C 2 HOH 53 165 90 HOH HOH A . C 2 HOH 54 166 91 HOH HOH A . C 2 HOH 55 167 93 HOH HOH A . C 2 HOH 56 168 95 HOH HOH A . C 2 HOH 57 169 96 HOH HOH A . C 2 HOH 58 170 97 HOH HOH A . C 2 HOH 59 171 99 HOH HOH A . C 2 HOH 60 172 100 HOH HOH A . C 2 HOH 61 173 101 HOH HOH A . C 2 HOH 62 174 103 HOH HOH A . C 2 HOH 63 175 105 HOH HOH A . C 2 HOH 64 176 107 HOH HOH A . C 2 HOH 65 177 108 HOH HOH A . C 2 HOH 66 178 111 HOH HOH A . C 2 HOH 67 179 112 HOH HOH A . C 2 HOH 68 180 114 HOH HOH A . C 2 HOH 69 181 115 HOH HOH A . C 2 HOH 70 182 116 HOH HOH A . C 2 HOH 71 183 117 HOH HOH A . C 2 HOH 72 184 118 HOH HOH A . C 2 HOH 73 185 119 HOH HOH A . C 2 HOH 74 186 120 HOH HOH A . C 2 HOH 75 187 122 HOH HOH A . C 2 HOH 76 188 124 HOH HOH A . C 2 HOH 77 189 126 HOH HOH A . C 2 HOH 78 190 129 HOH HOH A . C 2 HOH 79 191 130 HOH HOH A . C 2 HOH 80 192 132 HOH HOH A . C 2 HOH 81 193 135 HOH HOH A . D 2 HOH 1 132 31 HOH HOH B . D 2 HOH 2 133 1 HOH HOH B . D 2 HOH 3 134 6 HOH HOH B . D 2 HOH 4 135 7 HOH HOH B . D 2 HOH 5 136 8 HOH HOH B . D 2 HOH 6 137 15 HOH HOH B . D 2 HOH 7 138 17 HOH HOH B . D 2 HOH 8 139 18 HOH HOH B . D 2 HOH 9 140 25 HOH HOH B . D 2 HOH 10 141 27 HOH HOH B . D 2 HOH 11 142 29 HOH HOH B . D 2 HOH 12 143 32 HOH HOH B . D 2 HOH 13 144 33 HOH HOH B . D 2 HOH 14 145 37 HOH HOH B . D 2 HOH 15 146 38 HOH HOH B . D 2 HOH 16 147 41 HOH HOH B . D 2 HOH 17 148 43 HOH HOH B . D 2 HOH 18 149 44 HOH HOH B . D 2 HOH 19 150 46 HOH HOH B . D 2 HOH 20 151 51 HOH HOH B . D 2 HOH 21 152 56 HOH HOH B . D 2 HOH 22 153 59 HOH HOH B . D 2 HOH 23 154 60 HOH HOH B . D 2 HOH 24 155 61 HOH HOH B . D 2 HOH 25 156 63 HOH HOH B . D 2 HOH 26 157 64 HOH HOH B . D 2 HOH 27 158 65 HOH HOH B . D 2 HOH 28 159 66 HOH HOH B . D 2 HOH 29 160 67 HOH HOH B . D 2 HOH 30 161 72 HOH HOH B . D 2 HOH 31 162 73 HOH HOH B . D 2 HOH 32 163 76 HOH HOH B . D 2 HOH 33 164 77 HOH HOH B . D 2 HOH 34 165 81 HOH HOH B . D 2 HOH 35 166 83 HOH HOH B . D 2 HOH 36 167 88 HOH HOH B . D 2 HOH 37 168 89 HOH HOH B . D 2 HOH 38 169 92 HOH HOH B . D 2 HOH 39 170 94 HOH HOH B . D 2 HOH 40 171 98 HOH HOH B . D 2 HOH 41 172 102 HOH HOH B . D 2 HOH 42 173 104 HOH HOH B . D 2 HOH 43 174 106 HOH HOH B . D 2 HOH 44 175 109 HOH HOH B . D 2 HOH 45 176 110 HOH HOH B . D 2 HOH 46 177 113 HOH HOH B . D 2 HOH 47 178 121 HOH HOH B . D 2 HOH 48 179 123 HOH HOH B . D 2 HOH 49 180 125 HOH HOH B . D 2 HOH 50 181 127 HOH HOH B . D 2 HOH 51 182 128 HOH HOH B . D 2 HOH 52 183 131 HOH HOH B . D 2 HOH 53 184 133 HOH HOH B . D 2 HOH 54 185 134 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' Advisory 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' software 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.language' 5 4 'Structure model' '_software.location' 6 4 'Structure model' '_software.name' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' 9 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_phasing_MR.entry_id 3DYR _pdbx_phasing_MR.method_rotation 'fast direct' _pdbx_phasing_MR.method_translation &STRIP%trans_method _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 3 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 CNS . ? ? ? ? phasing ? ? ? 8 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 174 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 183 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_565 _pdbx_validate_symm_contact.dist 2.12 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 21 ? CG ? A ASP 21 CG 2 1 Y 1 A ASP 21 ? OD1 ? A ASP 21 OD1 3 1 Y 1 A ASP 21 ? OD2 ? A ASP 21 OD2 4 1 Y 1 A LYS 53 ? CG ? A LYS 53 CG 5 1 Y 1 A LYS 53 ? CD ? A LYS 53 CD 6 1 Y 1 A LYS 53 ? CE ? A LYS 53 CE 7 1 Y 1 A LYS 53 ? NZ ? A LYS 53 NZ 8 1 Y 0 A ILE 73 ? CD1 ? A ILE 73 CD1 9 1 Y 1 A LYS 97 ? CG ? A LYS 97 CG 10 1 Y 1 A LYS 97 ? CD ? A LYS 97 CD 11 1 Y 1 A LYS 97 ? CE ? A LYS 97 CE 12 1 Y 1 A LYS 97 ? NZ ? A LYS 97 NZ 13 1 Y 1 A LYS 101 ? CG ? A LYS 101 CG 14 1 Y 1 A LYS 101 ? CD ? A LYS 101 CD 15 1 Y 1 A LYS 101 ? CE ? A LYS 101 CE 16 1 Y 1 A LYS 101 ? NZ ? A LYS 101 NZ 17 1 Y 1 A GLU 102 ? CG ? A GLU 102 CG 18 1 Y 1 A GLU 102 ? CD ? A GLU 102 CD 19 1 Y 1 A GLU 102 ? OE1 ? A GLU 102 OE1 20 1 Y 1 A GLU 102 ? OE2 ? A GLU 102 OE2 21 1 Y 1 B ASP 3 ? CG ? B ASP 3 CG 22 1 Y 1 B ASP 3 ? OD1 ? B ASP 3 OD1 23 1 Y 1 B ASP 3 ? OD2 ? B ASP 3 OD2 24 1 Y 1 B HIS 7 ? CG ? B HIS 7 CG 25 1 Y 1 B HIS 7 ? ND1 ? B HIS 7 ND1 26 1 Y 1 B HIS 7 ? CD2 ? B HIS 7 CD2 27 1 Y 1 B HIS 7 ? CE1 ? B HIS 7 CE1 28 1 Y 1 B HIS 7 ? NE2 ? B HIS 7 NE2 29 1 Y 1 B LYS 19 ? CG ? B LYS 19 CG 30 1 Y 1 B LYS 19 ? CD ? B LYS 19 CD 31 1 Y 1 B LYS 19 ? CE ? B LYS 19 CE 32 1 Y 1 B LYS 19 ? NZ ? B LYS 19 NZ 33 1 Y 1 B ASP 21 ? CG ? B ASP 21 CG 34 1 Y 1 B ASP 21 ? OD1 ? B ASP 21 OD1 35 1 Y 1 B ASP 21 ? OD2 ? B ASP 21 OD2 36 1 Y 1 B GLN 51 ? CG ? B GLN 51 CG 37 1 Y 1 B GLN 51 ? CD ? B GLN 51 CD 38 1 Y 1 B GLN 51 ? OE1 ? B GLN 51 OE1 39 1 Y 1 B GLN 51 ? NE2 ? B GLN 51 NE2 40 1 Y 1 B LYS 53 ? CG ? B LYS 53 CG 41 1 Y 1 B LYS 53 ? CD ? B LYS 53 CD 42 1 Y 1 B LYS 53 ? CE ? B LYS 53 CE 43 1 Y 1 B LYS 53 ? NZ ? B LYS 53 NZ 44 1 Y 0 B ILE 61 ? CD1 ? B ILE 61 CD1 45 1 Y 1 B LYS 70 ? CG ? B LYS 70 CG 46 1 Y 1 B LYS 70 ? CD ? B LYS 70 CD 47 1 Y 1 B LYS 70 ? CE ? B LYS 70 CE 48 1 Y 1 B LYS 70 ? NZ ? B LYS 70 NZ 49 1 Y 0 B ILE 73 ? CD1 ? B ILE 73 CD1 50 1 Y 1 B LYS 83 ? CG ? B LYS 83 CG 51 1 Y 1 B LYS 83 ? CD ? B LYS 83 CD 52 1 Y 1 B LYS 83 ? CE ? B LYS 83 CE 53 1 Y 1 B LYS 83 ? NZ ? B LYS 83 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 1 ? B GLY 1 2 1 Y 1 B SER 2 ? B SER 2 3 1 Y 1 B ALA 110 ? B ALA 110 4 1 Y 1 B ALA 111 ? B ALA 111 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #