data_3E70 # _entry.id 3E70 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3E70 pdb_00003e70 10.2210/pdb3e70/pdb RCSB RCSB048954 ? ? WWPDB D_1000048954 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3DM9 ;Structures and conformations in solution of the signal recognition particle receptor from the archaeon pyrococcus furiosus ; unspecified PDB 3DMD ;Structures and conformations in solution of the signal recognition particle receptor from the archaeon pyrococcus furiosus ; unspecified PDB 3DM5 ;Structures of srp54 and srp19, the two proteins assembling the ribonucleic core of the signal recognition particle from the archaeon pyrococcus furiosus ; unspecified PDB 3DLU ;Structures of srp54 and srp19, the two proteins assembling the ribonucleic core of the signal recognition particle from the archaeon pyrococcus furiosus ; unspecified PDB 3DLV ;Structures of srp54 and srp19, the two proteins assembling the ribonucleic core of the signal recognition particle from the archaeon pyrococcus furiosus ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3E70 _pdbx_database_status.recvd_initial_deposition_date 2008-08-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egea, P.F.' 1 'Tsuruta, H.' 2 'Napetschnig, J.' 3 'Walter, P.' 4 'Stroud, R.M.' 5 # _citation.id primary _citation.title ;Structures of the signal recognition particle receptor from the archaeon Pyrococcus furiosus: implications for the targeting step at the membrane. ; _citation.journal_abbrev 'Plos One' _citation.journal_volume 3 _citation.page_first e3619 _citation.page_last e3619 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18978942 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0003619 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Egea, P.F.' 1 ? primary 'Tsuruta, H.' 2 ? primary 'de Leon, G.P.' 3 ? primary 'Napetschnig, J.' 4 ? primary 'Walter, P.' 5 ? primary 'Stroud, R.M.' 6 ? # _cell.entry_id 3E70 _cell.length_a 113.122 _cell.length_b 53.034 _cell.length_c 61.260 _cell.angle_alpha 90.00 _cell.angle_beta 107.42 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3E70 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Signal recognition particle receptor' 36439.906 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 78 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Dpa # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMASMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKI KQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV VIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVT KPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLE RIFGEENA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASMFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKI KQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV VIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVT KPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLE RIFGEENA ; _entity_poly.pdbx_strand_id C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 MET n 1 8 PHE n 1 9 GLY n 1 10 LYS n 1 11 LEU n 1 12 ARG n 1 13 GLU n 1 14 LYS n 1 15 LEU n 1 16 LYS n 1 17 SER n 1 18 PHE n 1 19 VAL n 1 20 LYS n 1 21 ARG n 1 22 VAL n 1 23 GLU n 1 24 GLU n 1 25 GLU n 1 26 VAL n 1 27 GLU n 1 28 LYS n 1 29 GLU n 1 30 GLU n 1 31 GLU n 1 32 GLU n 1 33 VAL n 1 34 GLU n 1 35 LYS n 1 36 LYS n 1 37 GLY n 1 38 LEU n 1 39 LEU n 1 40 ASP n 1 41 ARG n 1 42 ILE n 1 43 LEU n 1 44 THR n 1 45 VAL n 1 46 GLU n 1 47 ILE n 1 48 LYS n 1 49 GLU n 1 50 LYS n 1 51 ASP n 1 52 VAL n 1 53 ASP n 1 54 LYS n 1 55 ALA n 1 56 LEU n 1 57 ASP n 1 58 GLU n 1 59 LEU n 1 60 GLU n 1 61 ILE n 1 62 ASP n 1 63 LEU n 1 64 LEU n 1 65 GLU n 1 66 ALA n 1 67 ASP n 1 68 VAL n 1 69 ALA n 1 70 LEU n 1 71 GLU n 1 72 VAL n 1 73 VAL n 1 74 ASP n 1 75 ALA n 1 76 LEU n 1 77 ARG n 1 78 GLU n 1 79 LYS n 1 80 ILE n 1 81 LYS n 1 82 GLN n 1 83 LYS n 1 84 LEU n 1 85 VAL n 1 86 GLY n 1 87 LYS n 1 88 LYS n 1 89 VAL n 1 90 ARG n 1 91 ILE n 1 92 GLY n 1 93 THR n 1 94 ASP n 1 95 LYS n 1 96 GLY n 1 97 LYS n 1 98 ILE n 1 99 ILE n 1 100 GLU n 1 101 GLU n 1 102 ALA n 1 103 VAL n 1 104 LYS n 1 105 GLU n 1 106 ALA n 1 107 VAL n 1 108 SER n 1 109 GLU n 1 110 ILE n 1 111 LEU n 1 112 GLU n 1 113 THR n 1 114 SER n 1 115 ARG n 1 116 ARG n 1 117 ILE n 1 118 ASP n 1 119 LEU n 1 120 ILE n 1 121 GLU n 1 122 GLU n 1 123 ILE n 1 124 ARG n 1 125 LYS n 1 126 ALA n 1 127 GLU n 1 128 LYS n 1 129 PRO n 1 130 TYR n 1 131 VAL n 1 132 ILE n 1 133 MET n 1 134 PHE n 1 135 VAL n 1 136 GLY n 1 137 PHE n 1 138 ASN n 1 139 GLY n 1 140 SER n 1 141 GLY n 1 142 LYS n 1 143 THR n 1 144 THR n 1 145 THR n 1 146 ILE n 1 147 ALA n 1 148 LYS n 1 149 LEU n 1 150 ALA n 1 151 ASN n 1 152 TRP n 1 153 LEU n 1 154 LYS n 1 155 ASN n 1 156 HIS n 1 157 GLY n 1 158 PHE n 1 159 SER n 1 160 VAL n 1 161 VAL n 1 162 ILE n 1 163 ALA n 1 164 ALA n 1 165 SER n 1 166 ASP n 1 167 THR n 1 168 PHE n 1 169 ARG n 1 170 ALA n 1 171 GLY n 1 172 ALA n 1 173 ILE n 1 174 GLU n 1 175 GLN n 1 176 LEU n 1 177 GLU n 1 178 GLU n 1 179 HIS n 1 180 ALA n 1 181 LYS n 1 182 ARG n 1 183 ILE n 1 184 GLY n 1 185 VAL n 1 186 LYS n 1 187 VAL n 1 188 ILE n 1 189 LYS n 1 190 HIS n 1 191 SER n 1 192 TYR n 1 193 GLY n 1 194 ALA n 1 195 ASP n 1 196 PRO n 1 197 ALA n 1 198 ALA n 1 199 VAL n 1 200 ALA n 1 201 TYR n 1 202 ASP n 1 203 ALA n 1 204 ILE n 1 205 GLN n 1 206 HIS n 1 207 ALA n 1 208 LYS n 1 209 ALA n 1 210 ARG n 1 211 GLY n 1 212 ILE n 1 213 ASP n 1 214 VAL n 1 215 VAL n 1 216 LEU n 1 217 ILE n 1 218 ASP n 1 219 THR n 1 220 ALA n 1 221 GLY n 1 222 ARG n 1 223 SER n 1 224 GLU n 1 225 THR n 1 226 ASN n 1 227 ARG n 1 228 ASN n 1 229 LEU n 1 230 MET n 1 231 ASP n 1 232 GLU n 1 233 MET n 1 234 LYS n 1 235 LYS n 1 236 ILE n 1 237 ALA n 1 238 ARG n 1 239 VAL n 1 240 THR n 1 241 LYS n 1 242 PRO n 1 243 ASN n 1 244 LEU n 1 245 VAL n 1 246 ILE n 1 247 PHE n 1 248 VAL n 1 249 GLY n 1 250 ASP n 1 251 ALA n 1 252 LEU n 1 253 ALA n 1 254 GLY n 1 255 ASN n 1 256 ALA n 1 257 ILE n 1 258 VAL n 1 259 GLU n 1 260 GLN n 1 261 ALA n 1 262 ARG n 1 263 GLN n 1 264 PHE n 1 265 ASN n 1 266 GLU n 1 267 ALA n 1 268 VAL n 1 269 LYS n 1 270 ILE n 1 271 ASP n 1 272 GLY n 1 273 ILE n 1 274 ILE n 1 275 LEU n 1 276 THR n 1 277 LYS n 1 278 LEU n 1 279 ASP n 1 280 ALA n 1 281 ASP n 1 282 ALA n 1 283 ARG n 1 284 GLY n 1 285 GLY n 1 286 ALA n 1 287 ALA n 1 288 LEU n 1 289 SER n 1 290 ILE n 1 291 SER n 1 292 TYR n 1 293 VAL n 1 294 ILE n 1 295 ASP n 1 296 ALA n 1 297 PRO n 1 298 ILE n 1 299 LEU n 1 300 PHE n 1 301 VAL n 1 302 GLY n 1 303 VAL n 1 304 GLY n 1 305 GLN n 1 306 GLY n 1 307 TYR n 1 308 ASP n 1 309 ASP n 1 310 LEU n 1 311 ARG n 1 312 PRO n 1 313 PHE n 1 314 GLU n 1 315 LYS n 1 316 GLU n 1 317 TRP n 1 318 PHE n 1 319 LEU n 1 320 GLU n 1 321 ARG n 1 322 ILE n 1 323 PHE n 1 324 GLY n 1 325 GLU n 1 326 GLU n 1 327 ASN n 1 328 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PF1766 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DSM3638 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus furiosus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2261 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) ROSETTA2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8U051_PYRFU _struct_ref.pdbx_db_accession Q8U051 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVG KKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD TFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVI FVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGEE NA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3E70 _struct_ref_seq.pdbx_strand_id C _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 328 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8U051 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 322 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 322 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3E70 GLY C 1 ? UNP Q8U051 ? ? 'expression tag' -5 1 1 3E70 SER C 2 ? UNP Q8U051 ? ? 'expression tag' -4 2 1 3E70 HIS C 3 ? UNP Q8U051 ? ? 'expression tag' -3 3 1 3E70 MET C 4 ? UNP Q8U051 ? ? 'expression tag' -2 4 1 3E70 ALA C 5 ? UNP Q8U051 ? ? 'expression tag' -1 5 1 3E70 SER C 6 ? UNP Q8U051 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3E70 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;14-17% PEG 8000 TRIS 100mM pH=8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2008-05-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11588 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11588 # _reflns.entry_id 3E70 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 58.4 _reflns.d_resolution_high 1.97 _reflns.number_obs 23541 _reflns.number_all ? _reflns.percent_possible_obs 95.9 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value 0.049 _reflns.pdbx_netI_over_sigmaI 8.7 _reflns.B_iso_Wilson_estimate 41.00 _reflns.pdbx_redundancy 2.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.97 _reflns_shell.d_res_low 2.08 _reflns_shell.percent_possible_all 92.6 _reflns_shell.Rmerge_I_obs 0.447 _reflns_shell.pdbx_Rsym_value 0.447 _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3E70 _refine.ls_number_reflns_obs 23448 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.69 _refine.ls_d_res_high 1.97 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs 0.234 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.228 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.530 _refine.ls_number_reflns_R_free 1999 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -11.60980 _refine.aniso_B[2][2] 22.13360 _refine.aniso_B[3][3] -10.52380 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] -1.94390 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3DMD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'anistropic TLS refinement applied to the protein' _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2349 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 2484 _refine_hist.d_res_high 1.97 _refine_hist.d_res_low 29.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1.368 ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? f_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs . 1.9700 2.0139 0 0.3935 1.00 0.4758 . . 129 . . 'X-RAY DIFFRACTION' . . . 2.0193 2.0739 0 0.3823 1.00 0.3986 . . 139 . . 'X-RAY DIFFRACTION' . . . 2.0739 2.1349 0 0.3313 1.00 0.3593 . . 144 . . 'X-RAY DIFFRACTION' . . . 2.1349 2.2038 0 0.2888 1.00 0.3445 . . 143 . . 'X-RAY DIFFRACTION' . . . 2.2038 2.2825 0 0.2647 1.00 0.3293 . . 147 . . 'X-RAY DIFFRACTION' . . . 4.7421 29.6922 0 0.2086 1.00 0.2315 . . 135 . . 'X-RAY DIFFRACTION' . . # _struct.entry_id 3E70 _struct.title 'Structures and conformations in solution of the Signal Recognition Particle Receptor from the Archaeon Pyrococcus Furiosus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3E70 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'SIGNAL RECOGNITION PARTICLE RECEPTOR, FTSY, SRP-GTPASE, PROTEIN-TARGETING, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 8 ? GLU A 32 ? PHE C 2 GLU C 26 1 ? 25 HELX_P HELX_P2 2 LYS A 48 ? ALA A 66 ? LYS C 42 ALA C 60 1 ? 19 HELX_P HELX_P3 3 ALA A 69 ? VAL A 85 ? ALA C 63 VAL C 79 1 ? 17 HELX_P HELX_P4 4 GLY A 96 ? LEU A 111 ? GLY C 90 LEU C 105 1 ? 16 HELX_P HELX_P5 5 ASP A 118 ? LYS A 125 ? ASP C 112 LYS C 119 1 ? 8 HELX_P HELX_P6 6 GLY A 141 ? HIS A 156 ? GLY C 135 HIS C 150 1 ? 16 HELX_P HELX_P7 7 GLY A 171 ? ILE A 183 ? GLY C 165 ILE C 177 1 ? 13 HELX_P HELX_P8 8 ASP A 195 ? GLY A 211 ? ASP C 189 GLY C 205 1 ? 17 HELX_P HELX_P9 9 ASN A 228 ? LYS A 241 ? ASN C 222 LYS C 235 1 ? 14 HELX_P HELX_P10 10 LEU A 252 ? GLY A 254 ? LEU C 246 GLY C 248 5 ? 3 HELX_P HELX_P11 11 ASN A 255 ? VAL A 268 ? ASN C 249 VAL C 262 1 ? 14 HELX_P HELX_P12 12 LYS A 277 ? ASP A 281 ? LYS C 271 ASP C 275 5 ? 5 HELX_P HELX_P13 13 GLY A 284 ? ASP A 295 ? GLY C 278 ASP C 289 1 ? 12 HELX_P HELX_P14 14 GLU A 314 ? PHE A 323 ? GLU C 308 PHE C 317 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B GDP . O1B ? ? ? 1_555 C MG . MG ? ? C GDP 1001 C MG 1002 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? C MG 1002 C HOH 2046 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? C MG 1002 C HOH 2056 1_555 ? ? ? ? ? ? ? 2.252 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 128 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 122 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 129 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 123 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 44 ? GLU A 46 ? THR C 38 GLU C 40 A 2 LYS A 88 ? ARG A 90 ? LYS C 82 ARG C 84 B 1 LYS A 186 ? ILE A 188 ? LYS C 180 ILE C 182 B 2 VAL A 160 ? SER A 165 ? VAL C 154 SER C 159 B 3 VAL A 214 ? THR A 219 ? VAL C 208 THR C 213 B 4 TYR A 130 ? VAL A 135 ? TYR C 124 VAL C 129 B 5 LEU A 244 ? ASP A 250 ? LEU C 238 ASP C 244 B 6 GLY A 272 ? THR A 276 ? GLY C 266 THR C 270 B 7 ILE A 298 ? GLY A 302 ? ILE C 292 GLY C 296 B 8 LEU A 310 ? PRO A 312 ? LEU C 304 PRO C 306 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 45 ? N VAL C 39 O VAL A 89 ? O VAL C 83 B 1 2 O ILE A 188 ? O ILE C 182 N ILE A 162 ? N ILE C 156 B 2 3 N ALA A 163 ? N ALA C 157 O LEU A 216 ? O LEU C 210 B 3 4 O VAL A 215 ? O VAL C 209 N TYR A 130 ? N TYR C 124 B 4 5 N MET A 133 ? N MET C 127 O ILE A 246 ? O ILE C 240 B 5 6 N PHE A 247 ? N PHE C 241 O GLY A 272 ? O GLY C 266 B 6 7 N ILE A 273 ? N ILE C 267 O LEU A 299 ? O LEU C 293 B 7 8 N VAL A 301 ? N VAL C 295 O ARG A 311 ? O ARG C 305 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE GDP C1001' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG C1002' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GDP C2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 GLY A 139 ? GLY C 133 . ? 1_555 ? 2 AC1 20 SER A 140 ? SER C 134 . ? 1_555 ? 3 AC1 20 GLY A 141 ? GLY C 135 . ? 1_555 ? 4 AC1 20 LYS A 142 ? LYS C 136 . ? 1_555 ? 5 AC1 20 THR A 143 ? THR C 137 . ? 1_555 ? 6 AC1 20 THR A 144 ? THR C 138 . ? 1_555 ? 7 AC1 20 LYS A 148 ? LYS C 142 . ? 1_555 ? 8 AC1 20 LYS A 277 ? LYS C 271 . ? 1_555 ? 9 AC1 20 ASP A 279 ? ASP C 273 . ? 1_555 ? 10 AC1 20 GLY A 302 ? GLY C 296 . ? 1_555 ? 11 AC1 20 VAL A 303 ? VAL C 297 . ? 1_555 ? 12 AC1 20 GLY A 304 ? GLY C 298 . ? 1_555 ? 13 AC1 20 GLN A 305 ? GLN C 299 . ? 1_555 ? 14 AC1 20 MG C . ? MG C 1002 . ? 1_555 ? 15 AC1 20 HOH E . ? HOH C 2004 . ? 1_555 ? 16 AC1 20 HOH E . ? HOH C 2007 . ? 1_555 ? 17 AC1 20 HOH E . ? HOH C 2037 . ? 1_555 ? 18 AC1 20 HOH E . ? HOH C 2041 . ? 1_555 ? 19 AC1 20 HOH E . ? HOH C 2052 . ? 1_555 ? 20 AC1 20 HOH E . ? HOH C 2053 . ? 1_555 ? 21 AC2 6 THR A 143 ? THR C 137 . ? 1_555 ? 22 AC2 6 GDP B . ? GDP C 1001 . ? 1_555 ? 23 AC2 6 HOH E . ? HOH C 2004 . ? 1_555 ? 24 AC2 6 HOH E . ? HOH C 2046 . ? 1_555 ? 25 AC2 6 HOH E . ? HOH C 2052 . ? 1_555 ? 26 AC2 6 HOH E . ? HOH C 2056 . ? 1_555 ? 27 AC3 8 LYS A 186 ? LYS C 180 . ? 2_556 ? 28 AC3 8 LYS A 189 ? LYS C 183 . ? 1_555 ? 29 AC3 8 HIS A 190 ? HIS C 184 . ? 1_555 ? 30 AC3 8 ASP A 202 ? ASP C 196 . ? 1_555 ? 31 AC3 8 HIS A 206 ? HIS C 200 . ? 1_555 ? 32 AC3 8 ALA A 209 ? ALA C 203 . ? 1_555 ? 33 AC3 8 ARG A 210 ? ARG C 204 . ? 2_556 ? 34 AC3 8 HOH E . ? HOH C 2059 . ? 1_555 ? # _database_PDB_matrix.entry_id 3E70 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3E70 _atom_sites.fract_transf_matrix[1][1] 0.008840 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002774 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018856 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017109 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? C . n A 1 2 SER 2 -4 ? ? ? C . n A 1 3 HIS 3 -3 ? ? ? C . n A 1 4 MET 4 -2 ? ? ? C . n A 1 5 ALA 5 -1 ? ? ? C . n A 1 6 SER 6 0 ? ? ? C . n A 1 7 MET 7 1 1 MET MET C . n A 1 8 PHE 8 2 2 PHE PHE C . n A 1 9 GLY 9 3 3 GLY GLY C . n A 1 10 LYS 10 4 4 LYS LYS C . n A 1 11 LEU 11 5 5 LEU LEU C . n A 1 12 ARG 12 6 6 ARG ARG C . n A 1 13 GLU 13 7 7 GLU GLU C . n A 1 14 LYS 14 8 8 LYS LYS C . n A 1 15 LEU 15 9 9 LEU LEU C . n A 1 16 LYS 16 10 10 LYS LYS C . n A 1 17 SER 17 11 11 SER SER C . n A 1 18 PHE 18 12 12 PHE PHE C . n A 1 19 VAL 19 13 13 VAL VAL C . n A 1 20 LYS 20 14 14 LYS LYS C . n A 1 21 ARG 21 15 15 ARG ARG C . n A 1 22 VAL 22 16 16 VAL VAL C . n A 1 23 GLU 23 17 17 GLU GLU C . n A 1 24 GLU 24 18 18 GLU GLU C . n A 1 25 GLU 25 19 19 GLU GLU C . n A 1 26 VAL 26 20 20 VAL VAL C . n A 1 27 GLU 27 21 21 GLU GLU C . n A 1 28 LYS 28 22 22 LYS LYS C . n A 1 29 GLU 29 23 23 GLU GLU C . n A 1 30 GLU 30 24 24 GLU GLU C . n A 1 31 GLU 31 25 25 GLU GLU C . n A 1 32 GLU 32 26 26 GLU GLU C . n A 1 33 VAL 33 27 27 VAL VAL C . n A 1 34 GLU 34 28 ? ? ? C . n A 1 35 LYS 35 29 ? ? ? C . n A 1 36 LYS 36 30 ? ? ? C . n A 1 37 GLY 37 31 ? ? ? C . n A 1 38 LEU 38 32 ? ? ? C . n A 1 39 LEU 39 33 ? ? ? C . n A 1 40 ASP 40 34 ? ? ? C . n A 1 41 ARG 41 35 ? ? ? C . n A 1 42 ILE 42 36 36 ILE ILE C . n A 1 43 LEU 43 37 37 LEU LEU C . n A 1 44 THR 44 38 38 THR THR C . n A 1 45 VAL 45 39 39 VAL VAL C . n A 1 46 GLU 46 40 40 GLU GLU C . n A 1 47 ILE 47 41 41 ILE ILE C . n A 1 48 LYS 48 42 42 LYS LYS C . n A 1 49 GLU 49 43 43 GLU GLU C . n A 1 50 LYS 50 44 44 LYS LYS C . n A 1 51 ASP 51 45 45 ASP ASP C . n A 1 52 VAL 52 46 46 VAL VAL C . n A 1 53 ASP 53 47 47 ASP ASP C . n A 1 54 LYS 54 48 48 LYS LYS C . n A 1 55 ALA 55 49 49 ALA ALA C . n A 1 56 LEU 56 50 50 LEU LEU C . n A 1 57 ASP 57 51 51 ASP ASP C . n A 1 58 GLU 58 52 52 GLU GLU C . n A 1 59 LEU 59 53 53 LEU LEU C . n A 1 60 GLU 60 54 54 GLU GLU C . n A 1 61 ILE 61 55 55 ILE ILE C . n A 1 62 ASP 62 56 56 ASP ASP C . n A 1 63 LEU 63 57 57 LEU LEU C . n A 1 64 LEU 64 58 58 LEU LEU C . n A 1 65 GLU 65 59 59 GLU GLU C . n A 1 66 ALA 66 60 60 ALA ALA C . n A 1 67 ASP 67 61 61 ASP ASP C . n A 1 68 VAL 68 62 62 VAL VAL C . n A 1 69 ALA 69 63 63 ALA ALA C . n A 1 70 LEU 70 64 64 LEU LEU C . n A 1 71 GLU 71 65 65 GLU GLU C . n A 1 72 VAL 72 66 66 VAL VAL C . n A 1 73 VAL 73 67 67 VAL VAL C . n A 1 74 ASP 74 68 68 ASP ASP C . n A 1 75 ALA 75 69 69 ALA ALA C . n A 1 76 LEU 76 70 70 LEU LEU C . n A 1 77 ARG 77 71 71 ARG ARG C . n A 1 78 GLU 78 72 72 GLU GLU C . n A 1 79 LYS 79 73 73 LYS LYS C . n A 1 80 ILE 80 74 74 ILE ILE C . n A 1 81 LYS 81 75 75 LYS LYS C . n A 1 82 GLN 82 76 76 GLN GLN C . n A 1 83 LYS 83 77 77 LYS LYS C . n A 1 84 LEU 84 78 78 LEU LEU C . n A 1 85 VAL 85 79 79 VAL VAL C . n A 1 86 GLY 86 80 80 GLY GLY C . n A 1 87 LYS 87 81 81 LYS LYS C . n A 1 88 LYS 88 82 82 LYS LYS C . n A 1 89 VAL 89 83 83 VAL VAL C . n A 1 90 ARG 90 84 84 ARG ARG C . n A 1 91 ILE 91 85 85 ILE ILE C . n A 1 92 GLY 92 86 86 GLY GLY C . n A 1 93 THR 93 87 ? ? ? C . n A 1 94 ASP 94 88 ? ? ? C . n A 1 95 LYS 95 89 ? ? ? C . n A 1 96 GLY 96 90 90 GLY GLY C . n A 1 97 LYS 97 91 91 LYS LYS C . n A 1 98 ILE 98 92 92 ILE ILE C . n A 1 99 ILE 99 93 93 ILE ILE C . n A 1 100 GLU 100 94 94 GLU GLU C . n A 1 101 GLU 101 95 95 GLU GLU C . n A 1 102 ALA 102 96 96 ALA ALA C . n A 1 103 VAL 103 97 97 VAL VAL C . n A 1 104 LYS 104 98 98 LYS LYS C . n A 1 105 GLU 105 99 99 GLU GLU C . n A 1 106 ALA 106 100 100 ALA ALA C . n A 1 107 VAL 107 101 101 VAL VAL C . n A 1 108 SER 108 102 102 SER SER C . n A 1 109 GLU 109 103 103 GLU GLU C . n A 1 110 ILE 110 104 104 ILE ILE C . n A 1 111 LEU 111 105 105 LEU LEU C . n A 1 112 GLU 112 106 106 GLU GLU C . n A 1 113 THR 113 107 107 THR THR C . n A 1 114 SER 114 108 108 SER SER C . n A 1 115 ARG 115 109 109 ARG ARG C . n A 1 116 ARG 116 110 110 ARG ARG C . n A 1 117 ILE 117 111 111 ILE ILE C . n A 1 118 ASP 118 112 112 ASP ASP C . n A 1 119 LEU 119 113 113 LEU LEU C . n A 1 120 ILE 120 114 114 ILE ILE C . n A 1 121 GLU 121 115 115 GLU GLU C . n A 1 122 GLU 122 116 116 GLU GLU C . n A 1 123 ILE 123 117 117 ILE ILE C . n A 1 124 ARG 124 118 118 ARG ARG C . n A 1 125 LYS 125 119 119 LYS LYS C . n A 1 126 ALA 126 120 120 ALA ALA C . n A 1 127 GLU 127 121 121 GLU GLU C . n A 1 128 LYS 128 122 122 LYS LYS C . n A 1 129 PRO 129 123 123 PRO PRO C . n A 1 130 TYR 130 124 124 TYR TYR C . n A 1 131 VAL 131 125 125 VAL VAL C . n A 1 132 ILE 132 126 126 ILE ILE C . n A 1 133 MET 133 127 127 MET MET C . n A 1 134 PHE 134 128 128 PHE PHE C . n A 1 135 VAL 135 129 129 VAL VAL C . n A 1 136 GLY 136 130 130 GLY GLY C . n A 1 137 PHE 137 131 131 PHE PHE C . n A 1 138 ASN 138 132 132 ASN ASN C . n A 1 139 GLY 139 133 133 GLY GLY C . n A 1 140 SER 140 134 134 SER SER C . n A 1 141 GLY 141 135 135 GLY GLY C . n A 1 142 LYS 142 136 136 LYS LYS C . n A 1 143 THR 143 137 137 THR THR C . n A 1 144 THR 144 138 138 THR THR C . n A 1 145 THR 145 139 139 THR THR C . n A 1 146 ILE 146 140 140 ILE ILE C . n A 1 147 ALA 147 141 141 ALA ALA C . n A 1 148 LYS 148 142 142 LYS LYS C . n A 1 149 LEU 149 143 143 LEU LEU C . n A 1 150 ALA 150 144 144 ALA ALA C . n A 1 151 ASN 151 145 145 ASN ASN C . n A 1 152 TRP 152 146 146 TRP TRP C . n A 1 153 LEU 153 147 147 LEU LEU C . n A 1 154 LYS 154 148 148 LYS LYS C . n A 1 155 ASN 155 149 149 ASN ASN C . n A 1 156 HIS 156 150 150 HIS HIS C . n A 1 157 GLY 157 151 151 GLY GLY C . n A 1 158 PHE 158 152 152 PHE PHE C . n A 1 159 SER 159 153 153 SER SER C . n A 1 160 VAL 160 154 154 VAL VAL C . n A 1 161 VAL 161 155 155 VAL VAL C . n A 1 162 ILE 162 156 156 ILE ILE C . n A 1 163 ALA 163 157 157 ALA ALA C . n A 1 164 ALA 164 158 158 ALA ALA C . n A 1 165 SER 165 159 159 SER SER C . n A 1 166 ASP 166 160 160 ASP ASP C . n A 1 167 THR 167 161 161 THR THR C . n A 1 168 PHE 168 162 162 PHE PHE C . n A 1 169 ARG 169 163 163 ARG ARG C . n A 1 170 ALA 170 164 164 ALA ALA C . n A 1 171 GLY 171 165 165 GLY GLY C . n A 1 172 ALA 172 166 166 ALA ALA C . n A 1 173 ILE 173 167 167 ILE ILE C . n A 1 174 GLU 174 168 168 GLU GLU C . n A 1 175 GLN 175 169 169 GLN GLN C . n A 1 176 LEU 176 170 170 LEU LEU C . n A 1 177 GLU 177 171 171 GLU GLU C . n A 1 178 GLU 178 172 172 GLU GLU C . n A 1 179 HIS 179 173 173 HIS HIS C . n A 1 180 ALA 180 174 174 ALA ALA C . n A 1 181 LYS 181 175 175 LYS LYS C . n A 1 182 ARG 182 176 176 ARG ARG C . n A 1 183 ILE 183 177 177 ILE ILE C . n A 1 184 GLY 184 178 178 GLY GLY C . n A 1 185 VAL 185 179 179 VAL VAL C . n A 1 186 LYS 186 180 180 LYS LYS C . n A 1 187 VAL 187 181 181 VAL VAL C . n A 1 188 ILE 188 182 182 ILE ILE C . n A 1 189 LYS 189 183 183 LYS LYS C . n A 1 190 HIS 190 184 184 HIS HIS C . n A 1 191 SER 191 185 185 SER SER C . n A 1 192 TYR 192 186 186 TYR TYR C . n A 1 193 GLY 193 187 187 GLY GLY C . n A 1 194 ALA 194 188 188 ALA ALA C . n A 1 195 ASP 195 189 189 ASP ASP C . n A 1 196 PRO 196 190 190 PRO PRO C . n A 1 197 ALA 197 191 191 ALA ALA C . n A 1 198 ALA 198 192 192 ALA ALA C . n A 1 199 VAL 199 193 193 VAL VAL C . n A 1 200 ALA 200 194 194 ALA ALA C . n A 1 201 TYR 201 195 195 TYR TYR C . n A 1 202 ASP 202 196 196 ASP ASP C . n A 1 203 ALA 203 197 197 ALA ALA C . n A 1 204 ILE 204 198 198 ILE ILE C . n A 1 205 GLN 205 199 199 GLN GLN C . n A 1 206 HIS 206 200 200 HIS HIS C . n A 1 207 ALA 207 201 201 ALA ALA C . n A 1 208 LYS 208 202 202 LYS LYS C . n A 1 209 ALA 209 203 203 ALA ALA C . n A 1 210 ARG 210 204 204 ARG ARG C . n A 1 211 GLY 211 205 205 GLY GLY C . n A 1 212 ILE 212 206 206 ILE ILE C . n A 1 213 ASP 213 207 207 ASP ASP C . n A 1 214 VAL 214 208 208 VAL VAL C . n A 1 215 VAL 215 209 209 VAL VAL C . n A 1 216 LEU 216 210 210 LEU LEU C . n A 1 217 ILE 217 211 211 ILE ILE C . n A 1 218 ASP 218 212 212 ASP ASP C . n A 1 219 THR 219 213 213 THR THR C . n A 1 220 ALA 220 214 214 ALA ALA C . n A 1 221 GLY 221 215 215 GLY GLY C . n A 1 222 ARG 222 216 216 ARG ARG C . n A 1 223 SER 223 217 217 SER SER C . n A 1 224 GLU 224 218 218 GLU GLU C . n A 1 225 THR 225 219 219 THR THR C . n A 1 226 ASN 226 220 220 ASN ASN C . n A 1 227 ARG 227 221 221 ARG ARG C . n A 1 228 ASN 228 222 222 ASN ASN C . n A 1 229 LEU 229 223 223 LEU LEU C . n A 1 230 MET 230 224 224 MET MET C . n A 1 231 ASP 231 225 225 ASP ASP C . n A 1 232 GLU 232 226 226 GLU GLU C . n A 1 233 MET 233 227 227 MET MET C . n A 1 234 LYS 234 228 228 LYS LYS C . n A 1 235 LYS 235 229 229 LYS LYS C . n A 1 236 ILE 236 230 230 ILE ILE C . n A 1 237 ALA 237 231 231 ALA ALA C . n A 1 238 ARG 238 232 232 ARG ARG C . n A 1 239 VAL 239 233 233 VAL VAL C . n A 1 240 THR 240 234 234 THR THR C . n A 1 241 LYS 241 235 235 LYS LYS C . n A 1 242 PRO 242 236 236 PRO PRO C . n A 1 243 ASN 243 237 237 ASN ASN C . n A 1 244 LEU 244 238 238 LEU LEU C . n A 1 245 VAL 245 239 239 VAL VAL C . n A 1 246 ILE 246 240 240 ILE ILE C . n A 1 247 PHE 247 241 241 PHE PHE C . n A 1 248 VAL 248 242 242 VAL VAL C . n A 1 249 GLY 249 243 243 GLY GLY C . n A 1 250 ASP 250 244 244 ASP ASP C . n A 1 251 ALA 251 245 245 ALA ALA C . n A 1 252 LEU 252 246 246 LEU LEU C . n A 1 253 ALA 253 247 247 ALA ALA C . n A 1 254 GLY 254 248 248 GLY GLY C . n A 1 255 ASN 255 249 249 ASN ASN C . n A 1 256 ALA 256 250 250 ALA ALA C . n A 1 257 ILE 257 251 251 ILE ILE C . n A 1 258 VAL 258 252 252 VAL VAL C . n A 1 259 GLU 259 253 253 GLU GLU C . n A 1 260 GLN 260 254 254 GLN GLN C . n A 1 261 ALA 261 255 255 ALA ALA C . n A 1 262 ARG 262 256 256 ARG ARG C . n A 1 263 GLN 263 257 257 GLN GLN C . n A 1 264 PHE 264 258 258 PHE PHE C . n A 1 265 ASN 265 259 259 ASN ASN C . n A 1 266 GLU 266 260 260 GLU GLU C . n A 1 267 ALA 267 261 261 ALA ALA C . n A 1 268 VAL 268 262 262 VAL VAL C . n A 1 269 LYS 269 263 263 LYS LYS C . n A 1 270 ILE 270 264 264 ILE ILE C . n A 1 271 ASP 271 265 265 ASP ASP C . n A 1 272 GLY 272 266 266 GLY GLY C . n A 1 273 ILE 273 267 267 ILE ILE C . n A 1 274 ILE 274 268 268 ILE ILE C . n A 1 275 LEU 275 269 269 LEU LEU C . n A 1 276 THR 276 270 270 THR THR C . n A 1 277 LYS 277 271 271 LYS LYS C . n A 1 278 LEU 278 272 272 LEU LEU C . n A 1 279 ASP 279 273 273 ASP ASP C . n A 1 280 ALA 280 274 274 ALA ALA C . n A 1 281 ASP 281 275 275 ASP ASP C . n A 1 282 ALA 282 276 276 ALA ALA C . n A 1 283 ARG 283 277 277 ARG ARG C . n A 1 284 GLY 284 278 278 GLY GLY C . n A 1 285 GLY 285 279 279 GLY GLY C . n A 1 286 ALA 286 280 280 ALA ALA C . n A 1 287 ALA 287 281 281 ALA ALA C . n A 1 288 LEU 288 282 282 LEU LEU C . n A 1 289 SER 289 283 283 SER SER C . n A 1 290 ILE 290 284 284 ILE ILE C . n A 1 291 SER 291 285 285 SER SER C . n A 1 292 TYR 292 286 286 TYR TYR C . n A 1 293 VAL 293 287 287 VAL VAL C . n A 1 294 ILE 294 288 288 ILE ILE C . n A 1 295 ASP 295 289 289 ASP ASP C . n A 1 296 ALA 296 290 290 ALA ALA C . n A 1 297 PRO 297 291 291 PRO PRO C . n A 1 298 ILE 298 292 292 ILE ILE C . n A 1 299 LEU 299 293 293 LEU LEU C . n A 1 300 PHE 300 294 294 PHE PHE C . n A 1 301 VAL 301 295 295 VAL VAL C . n A 1 302 GLY 302 296 296 GLY GLY C . n A 1 303 VAL 303 297 297 VAL VAL C . n A 1 304 GLY 304 298 298 GLY GLY C . n A 1 305 GLN 305 299 299 GLN GLN C . n A 1 306 GLY 306 300 300 GLY GLY C . n A 1 307 TYR 307 301 301 TYR TYR C . n A 1 308 ASP 308 302 302 ASP ASP C . n A 1 309 ASP 309 303 303 ASP ASP C . n A 1 310 LEU 310 304 304 LEU LEU C . n A 1 311 ARG 311 305 305 ARG ARG C . n A 1 312 PRO 312 306 306 PRO PRO C . n A 1 313 PHE 313 307 307 PHE PHE C . n A 1 314 GLU 314 308 308 GLU GLU C . n A 1 315 LYS 315 309 309 LYS LYS C . n A 1 316 GLU 316 310 310 GLU GLU C . n A 1 317 TRP 317 311 311 TRP TRP C . n A 1 318 PHE 318 312 312 PHE PHE C . n A 1 319 LEU 319 313 313 LEU LEU C . n A 1 320 GLU 320 314 314 GLU GLU C . n A 1 321 ARG 321 315 315 ARG ARG C . n A 1 322 ILE 322 316 316 ILE ILE C . n A 1 323 PHE 323 317 317 PHE PHE C . n A 1 324 GLY 324 318 318 GLY GLY C . n A 1 325 GLU 325 319 ? ? ? C . n A 1 326 GLU 326 320 ? ? ? C . n A 1 327 ASN 327 321 ? ? ? C . n A 1 328 ALA 328 322 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 1001 1001 GDP GDP C . C 3 MG 1 1002 1002 MG MG C . D 2 GDP 1 2001 2001 GDP GDP C . E 4 HOH 1 2002 2002 HOH HOH C . E 4 HOH 2 2003 2003 HOH HOH C . E 4 HOH 3 2004 2004 HOH HOH C . E 4 HOH 4 2005 2005 HOH HOH C . E 4 HOH 5 2006 2006 HOH HOH C . E 4 HOH 6 2007 2007 HOH HOH C . E 4 HOH 7 2008 2008 HOH HOH C . E 4 HOH 8 2009 2009 HOH HOH C . E 4 HOH 9 2010 2010 HOH HOH C . E 4 HOH 10 2011 2011 HOH HOH C . E 4 HOH 11 2012 2012 HOH HOH C . E 4 HOH 12 2013 2013 HOH HOH C . E 4 HOH 13 2014 2014 HOH HOH C . E 4 HOH 14 2015 2015 HOH HOH C . E 4 HOH 15 2016 2016 HOH HOH C . E 4 HOH 16 2017 2017 HOH HOH C . E 4 HOH 17 2018 2018 HOH HOH C . E 4 HOH 18 2019 2019 HOH HOH C . E 4 HOH 19 2020 2020 HOH HOH C . E 4 HOH 20 2021 2021 HOH HOH C . E 4 HOH 21 2022 2022 HOH HOH C . E 4 HOH 22 2023 2023 HOH HOH C . E 4 HOH 23 2024 2024 HOH HOH C . E 4 HOH 24 2025 2025 HOH HOH C . E 4 HOH 25 2026 2026 HOH HOH C . E 4 HOH 26 2027 2027 HOH HOH C . E 4 HOH 27 2028 2028 HOH HOH C . E 4 HOH 28 2029 2029 HOH HOH C . E 4 HOH 29 2030 2030 HOH HOH C . E 4 HOH 30 2031 2031 HOH HOH C . E 4 HOH 31 2032 2032 HOH HOH C . E 4 HOH 32 2033 2033 HOH HOH C . E 4 HOH 33 2034 2034 HOH HOH C . E 4 HOH 34 2035 2035 HOH HOH C . E 4 HOH 35 2036 2036 HOH HOH C . E 4 HOH 36 2037 2037 HOH HOH C . E 4 HOH 37 2038 2038 HOH HOH C . E 4 HOH 38 2039 2039 HOH HOH C . E 4 HOH 39 2040 2040 HOH HOH C . E 4 HOH 40 2041 2041 HOH HOH C . E 4 HOH 41 2042 2042 HOH HOH C . E 4 HOH 42 2043 2043 HOH HOH C . E 4 HOH 43 2044 2044 HOH HOH C . E 4 HOH 44 2046 2046 HOH HOH C . E 4 HOH 45 2047 2047 HOH HOH C . E 4 HOH 46 2048 2048 HOH HOH C . E 4 HOH 47 2049 2049 HOH HOH C . E 4 HOH 48 2050 2050 HOH HOH C . E 4 HOH 49 2051 2051 HOH HOH C . E 4 HOH 50 2052 2052 HOH HOH C . E 4 HOH 51 2053 2053 HOH HOH C . E 4 HOH 52 2054 2054 HOH HOH C . E 4 HOH 53 2055 2055 HOH HOH C . E 4 HOH 54 2056 2056 HOH HOH C . E 4 HOH 55 2058 2058 HOH HOH C . E 4 HOH 56 2059 2059 HOH HOH C . E 4 HOH 57 2060 2060 HOH HOH C . E 4 HOH 58 2062 2062 HOH HOH C . E 4 HOH 59 2063 2063 HOH HOH C . E 4 HOH 60 2064 2064 HOH HOH C . E 4 HOH 61 2065 2065 HOH HOH C . E 4 HOH 62 2066 2066 HOH HOH C . E 4 HOH 63 2067 2067 HOH HOH C . E 4 HOH 64 2068 2068 HOH HOH C . E 4 HOH 65 2069 2069 HOH HOH C . E 4 HOH 66 2070 2070 HOH HOH C . E 4 HOH 67 2071 2071 HOH HOH C . E 4 HOH 68 2072 2072 HOH HOH C . E 4 HOH 69 2073 2073 HOH HOH C . E 4 HOH 70 2075 2075 HOH HOH C . E 4 HOH 71 2077 2077 HOH HOH C . E 4 HOH 72 2078 2078 HOH HOH C . E 4 HOH 73 2079 2079 HOH HOH C . E 4 HOH 74 2080 2080 HOH HOH C . E 4 HOH 75 2081 2081 HOH HOH C . E 4 HOH 76 2082 2082 HOH HOH C . E 4 HOH 77 2083 2083 HOH HOH C . E 4 HOH 78 2084 2084 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1B ? B GDP . ? C GDP 1001 ? 1_555 MG ? C MG . ? C MG 1002 ? 1_555 O ? E HOH . ? C HOH 2046 ? 1_555 168.7 ? 2 O1B ? B GDP . ? C GDP 1001 ? 1_555 MG ? C MG . ? C MG 1002 ? 1_555 O ? E HOH . ? C HOH 2056 ? 1_555 98.4 ? 3 O ? E HOH . ? C HOH 2046 ? 1_555 MG ? C MG . ? C MG 1002 ? 1_555 O ? E HOH . ? C HOH 2056 ? 1_555 79.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.value' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine)' ? 1 MOSFLM 'data reduction' 'IN ELVES' ? 2 SCALA 'data scaling' 'IN ELVES' ? 3 PHENIX phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 MG C MG 1002 ? ? O C HOH 2052 ? ? 1.66 2 1 OG1 C THR 137 ? ? MG C MG 1002 ? ? 1.69 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NZ _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 LYS _pdbx_validate_symm_contact.auth_seq_id_1 180 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O1B _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 GDP _pdbx_validate_symm_contact.auth_seq_id_2 2001 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_556 _pdbx_validate_symm_contact.dist 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU C 26 ? ? -54.74 19.75 2 1 ASP C 61 ? ? 87.30 15.35 3 1 HIS C 184 ? ? -111.30 -99.26 4 1 THR C 219 ? ? -24.09 -67.49 5 1 ARG C 221 ? ? 165.61 -75.36 6 1 ASN C 222 ? ? 61.50 114.74 7 1 PHE C 317 ? ? -140.84 -70.75 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 4 ? CG ? A LYS 10 CG 2 1 Y 1 C LYS 4 ? CD ? A LYS 10 CD 3 1 Y 1 C LYS 4 ? CE ? A LYS 10 CE 4 1 Y 1 C LYS 4 ? NZ ? A LYS 10 NZ 5 1 Y 1 C VAL 27 ? CG1 ? A VAL 33 CG1 6 1 Y 1 C VAL 27 ? CG2 ? A VAL 33 CG2 7 1 Y 1 C ILE 36 ? CG1 ? A ILE 42 CG1 8 1 Y 1 C ILE 36 ? CG2 ? A ILE 42 CG2 9 1 Y 1 C ILE 36 ? CD1 ? A ILE 42 CD1 10 1 Y 1 C VAL 39 ? CG1 ? A VAL 45 CG1 11 1 Y 1 C VAL 39 ? CG2 ? A VAL 45 CG2 12 1 Y 1 C LYS 44 ? CG ? A LYS 50 CG 13 1 Y 1 C LYS 44 ? CD ? A LYS 50 CD 14 1 Y 1 C LYS 44 ? CE ? A LYS 50 CE 15 1 Y 1 C LYS 44 ? NZ ? A LYS 50 NZ 16 1 Y 1 C ASP 61 ? CG ? A ASP 67 CG 17 1 Y 1 C ASP 61 ? OD1 ? A ASP 67 OD1 18 1 Y 1 C ASP 61 ? OD2 ? A ASP 67 OD2 19 1 Y 1 C LYS 75 ? CG ? A LYS 81 CG 20 1 Y 1 C LYS 75 ? CD ? A LYS 81 CD 21 1 Y 1 C LYS 75 ? CE ? A LYS 81 CE 22 1 Y 1 C LYS 75 ? NZ ? A LYS 81 NZ 23 1 Y 1 C LYS 91 ? CG ? A LYS 97 CG 24 1 Y 1 C LYS 91 ? CD ? A LYS 97 CD 25 1 Y 1 C LYS 91 ? CE ? A LYS 97 CE 26 1 Y 1 C LYS 91 ? NZ ? A LYS 97 NZ 27 1 Y 1 C GLU 95 ? CG ? A GLU 101 CG 28 1 Y 1 C GLU 95 ? CD ? A GLU 101 CD 29 1 Y 1 C GLU 95 ? OE1 ? A GLU 101 OE1 30 1 Y 1 C GLU 95 ? OE2 ? A GLU 101 OE2 31 1 Y 1 C GLU 106 ? CG ? A GLU 112 CG 32 1 Y 1 C GLU 106 ? CD ? A GLU 112 CD 33 1 Y 1 C GLU 106 ? OE1 ? A GLU 112 OE1 34 1 Y 1 C GLU 106 ? OE2 ? A GLU 112 OE2 35 1 Y 1 C ARG 109 ? CG ? A ARG 115 CG 36 1 Y 1 C ARG 109 ? CD ? A ARG 115 CD 37 1 Y 1 C ARG 109 ? NE ? A ARG 115 NE 38 1 Y 1 C ARG 109 ? CZ ? A ARG 115 CZ 39 1 Y 1 C ARG 109 ? NH1 ? A ARG 115 NH1 40 1 Y 1 C ARG 109 ? NH2 ? A ARG 115 NH2 41 1 Y 1 C ARG 110 ? CG ? A ARG 116 CG 42 1 Y 1 C ARG 110 ? CD ? A ARG 116 CD 43 1 Y 1 C ARG 110 ? NE ? A ARG 116 NE 44 1 Y 1 C ARG 110 ? CZ ? A ARG 116 CZ 45 1 Y 1 C ARG 110 ? NH1 ? A ARG 116 NH1 46 1 Y 1 C ARG 110 ? NH2 ? A ARG 116 NH2 47 1 Y 1 C ARG 118 ? CG ? A ARG 124 CG 48 1 Y 1 C ARG 118 ? CD ? A ARG 124 CD 49 1 Y 1 C ARG 118 ? NE ? A ARG 124 NE 50 1 Y 1 C ARG 118 ? CZ ? A ARG 124 CZ 51 1 Y 1 C ARG 118 ? NH1 ? A ARG 124 NH1 52 1 Y 1 C ARG 118 ? NH2 ? A ARG 124 NH2 53 1 Y 1 C THR 219 ? OG1 ? A THR 225 OG1 54 1 Y 1 C THR 219 ? CG2 ? A THR 225 CG2 55 1 Y 1 C ASN 220 ? CG ? A ASN 226 CG 56 1 Y 1 C ASN 220 ? OD1 ? A ASN 226 OD1 57 1 Y 1 C ASN 220 ? ND2 ? A ASN 226 ND2 58 1 Y 1 C ARG 221 ? CG ? A ARG 227 CG 59 1 Y 1 C ARG 221 ? CD ? A ARG 227 CD 60 1 Y 1 C ARG 221 ? NE ? A ARG 227 NE 61 1 Y 1 C ARG 221 ? CZ ? A ARG 227 CZ 62 1 Y 1 C ARG 221 ? NH1 ? A ARG 227 NH1 63 1 Y 1 C ARG 221 ? NH2 ? A ARG 227 NH2 64 1 Y 1 C LYS 228 ? CG ? A LYS 234 CG 65 1 Y 1 C LYS 228 ? CD ? A LYS 234 CD 66 1 Y 1 C LYS 228 ? CE ? A LYS 234 CE 67 1 Y 1 C LYS 228 ? NZ ? A LYS 234 NZ 68 1 Y 1 C LYS 229 ? CG ? A LYS 235 CG 69 1 Y 1 C LYS 229 ? CD ? A LYS 235 CD 70 1 Y 1 C LYS 229 ? CE ? A LYS 235 CE 71 1 Y 1 C LYS 229 ? NZ ? A LYS 235 NZ 72 1 Y 1 C GLU 253 ? CG ? A GLU 259 CG 73 1 Y 1 C GLU 253 ? CD ? A GLU 259 CD 74 1 Y 1 C GLU 253 ? OE1 ? A GLU 259 OE1 75 1 Y 1 C GLU 253 ? OE2 ? A GLU 259 OE2 76 1 Y 1 C GLU 308 ? CG ? A GLU 314 CG 77 1 Y 1 C GLU 308 ? CD ? A GLU 314 CD 78 1 Y 1 C GLU 308 ? OE1 ? A GLU 314 OE1 79 1 Y 1 C GLU 308 ? OE2 ? A GLU 314 OE2 80 1 Y 1 C LYS 309 ? CG ? A LYS 315 CG 81 1 Y 1 C LYS 309 ? CD ? A LYS 315 CD 82 1 Y 1 C LYS 309 ? CE ? A LYS 315 CE 83 1 Y 1 C LYS 309 ? NZ ? A LYS 315 NZ 84 1 Y 1 C GLU 314 ? CG ? A GLU 320 CG 85 1 Y 1 C GLU 314 ? CD ? A GLU 320 CD 86 1 Y 1 C GLU 314 ? OE1 ? A GLU 320 OE1 87 1 Y 1 C GLU 314 ? OE2 ? A GLU 320 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLY -5 ? A GLY 1 2 1 Y 1 C SER -4 ? A SER 2 3 1 Y 1 C HIS -3 ? A HIS 3 4 1 Y 1 C MET -2 ? A MET 4 5 1 Y 1 C ALA -1 ? A ALA 5 6 1 Y 1 C SER 0 ? A SER 6 7 1 Y 1 C GLU 28 ? A GLU 34 8 1 Y 1 C LYS 29 ? A LYS 35 9 1 Y 1 C LYS 30 ? A LYS 36 10 1 Y 1 C GLY 31 ? A GLY 37 11 1 Y 1 C LEU 32 ? A LEU 38 12 1 Y 1 C LEU 33 ? A LEU 39 13 1 Y 1 C ASP 34 ? A ASP 40 14 1 Y 1 C ARG 35 ? A ARG 41 15 1 Y 1 C THR 87 ? A THR 93 16 1 Y 1 C ASP 88 ? A ASP 94 17 1 Y 1 C LYS 89 ? A LYS 95 18 1 Y 1 C GLU 319 ? A GLU 325 19 1 Y 1 C GLU 320 ? A GLU 326 20 1 Y 1 C ASN 321 ? A ASN 327 21 1 Y 1 C ALA 322 ? A ALA 328 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GDP PB P N N 74 GDP O1B O N N 75 GDP O2B O N N 76 GDP O3B O N N 77 GDP O3A O N N 78 GDP PA P N N 79 GDP O1A O N N 80 GDP O2A O N N 81 GDP "O5'" O N N 82 GDP "C5'" C N N 83 GDP "C4'" C N R 84 GDP "O4'" O N N 85 GDP "C3'" C N S 86 GDP "O3'" O N N 87 GDP "C2'" C N R 88 GDP "O2'" O N N 89 GDP "C1'" C N R 90 GDP N9 N Y N 91 GDP C8 C Y N 92 GDP N7 N Y N 93 GDP C5 C Y N 94 GDP C6 C N N 95 GDP O6 O N N 96 GDP N1 N N N 97 GDP C2 C N N 98 GDP N2 N N N 99 GDP N3 N N N 100 GDP C4 C Y N 101 GDP HOB2 H N N 102 GDP HOB3 H N N 103 GDP HOA2 H N N 104 GDP "H5'" H N N 105 GDP "H5''" H N N 106 GDP "H4'" H N N 107 GDP "H3'" H N N 108 GDP "HO3'" H N N 109 GDP "H2'" H N N 110 GDP "HO2'" H N N 111 GDP "H1'" H N N 112 GDP H8 H N N 113 GDP HN1 H N N 114 GDP HN21 H N N 115 GDP HN22 H N N 116 GLN N N N N 117 GLN CA C N S 118 GLN C C N N 119 GLN O O N N 120 GLN CB C N N 121 GLN CG C N N 122 GLN CD C N N 123 GLN OE1 O N N 124 GLN NE2 N N N 125 GLN OXT O N N 126 GLN H H N N 127 GLN H2 H N N 128 GLN HA H N N 129 GLN HB2 H N N 130 GLN HB3 H N N 131 GLN HG2 H N N 132 GLN HG3 H N N 133 GLN HE21 H N N 134 GLN HE22 H N N 135 GLN HXT H N N 136 GLU N N N N 137 GLU CA C N S 138 GLU C C N N 139 GLU O O N N 140 GLU CB C N N 141 GLU CG C N N 142 GLU CD C N N 143 GLU OE1 O N N 144 GLU OE2 O N N 145 GLU OXT O N N 146 GLU H H N N 147 GLU H2 H N N 148 GLU HA H N N 149 GLU HB2 H N N 150 GLU HB3 H N N 151 GLU HG2 H N N 152 GLU HG3 H N N 153 GLU HE2 H N N 154 GLU HXT H N N 155 GLY N N N N 156 GLY CA C N N 157 GLY C C N N 158 GLY O O N N 159 GLY OXT O N N 160 GLY H H N N 161 GLY H2 H N N 162 GLY HA2 H N N 163 GLY HA3 H N N 164 GLY HXT H N N 165 HIS N N N N 166 HIS CA C N S 167 HIS C C N N 168 HIS O O N N 169 HIS CB C N N 170 HIS CG C Y N 171 HIS ND1 N Y N 172 HIS CD2 C Y N 173 HIS CE1 C Y N 174 HIS NE2 N Y N 175 HIS OXT O N N 176 HIS H H N N 177 HIS H2 H N N 178 HIS HA H N N 179 HIS HB2 H N N 180 HIS HB3 H N N 181 HIS HD1 H N N 182 HIS HD2 H N N 183 HIS HE1 H N N 184 HIS HE2 H N N 185 HIS HXT H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 ILE N N N N 190 ILE CA C N S 191 ILE C C N N 192 ILE O O N N 193 ILE CB C N S 194 ILE CG1 C N N 195 ILE CG2 C N N 196 ILE CD1 C N N 197 ILE OXT O N N 198 ILE H H N N 199 ILE H2 H N N 200 ILE HA H N N 201 ILE HB H N N 202 ILE HG12 H N N 203 ILE HG13 H N N 204 ILE HG21 H N N 205 ILE HG22 H N N 206 ILE HG23 H N N 207 ILE HD11 H N N 208 ILE HD12 H N N 209 ILE HD13 H N N 210 ILE HXT H N N 211 LEU N N N N 212 LEU CA C N S 213 LEU C C N N 214 LEU O O N N 215 LEU CB C N N 216 LEU CG C N N 217 LEU CD1 C N N 218 LEU CD2 C N N 219 LEU OXT O N N 220 LEU H H N N 221 LEU H2 H N N 222 LEU HA H N N 223 LEU HB2 H N N 224 LEU HB3 H N N 225 LEU HG H N N 226 LEU HD11 H N N 227 LEU HD12 H N N 228 LEU HD13 H N N 229 LEU HD21 H N N 230 LEU HD22 H N N 231 LEU HD23 H N N 232 LEU HXT H N N 233 LYS N N N N 234 LYS CA C N S 235 LYS C C N N 236 LYS O O N N 237 LYS CB C N N 238 LYS CG C N N 239 LYS CD C N N 240 LYS CE C N N 241 LYS NZ N N N 242 LYS OXT O N N 243 LYS H H N N 244 LYS H2 H N N 245 LYS HA H N N 246 LYS HB2 H N N 247 LYS HB3 H N N 248 LYS HG2 H N N 249 LYS HG3 H N N 250 LYS HD2 H N N 251 LYS HD3 H N N 252 LYS HE2 H N N 253 LYS HE3 H N N 254 LYS HZ1 H N N 255 LYS HZ2 H N N 256 LYS HZ3 H N N 257 LYS HXT H N N 258 MET N N N N 259 MET CA C N S 260 MET C C N N 261 MET O O N N 262 MET CB C N N 263 MET CG C N N 264 MET SD S N N 265 MET CE C N N 266 MET OXT O N N 267 MET H H N N 268 MET H2 H N N 269 MET HA H N N 270 MET HB2 H N N 271 MET HB3 H N N 272 MET HG2 H N N 273 MET HG3 H N N 274 MET HE1 H N N 275 MET HE2 H N N 276 MET HE3 H N N 277 MET HXT H N N 278 MG MG MG N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TRP N N N N 351 TRP CA C N S 352 TRP C C N N 353 TRP O O N N 354 TRP CB C N N 355 TRP CG C Y N 356 TRP CD1 C Y N 357 TRP CD2 C Y N 358 TRP NE1 N Y N 359 TRP CE2 C Y N 360 TRP CE3 C Y N 361 TRP CZ2 C Y N 362 TRP CZ3 C Y N 363 TRP CH2 C Y N 364 TRP OXT O N N 365 TRP H H N N 366 TRP H2 H N N 367 TRP HA H N N 368 TRP HB2 H N N 369 TRP HB3 H N N 370 TRP HD1 H N N 371 TRP HE1 H N N 372 TRP HE3 H N N 373 TRP HZ2 H N N 374 TRP HZ3 H N N 375 TRP HH2 H N N 376 TRP HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 VAL N N N N 402 VAL CA C N S 403 VAL C C N N 404 VAL O O N N 405 VAL CB C N N 406 VAL CG1 C N N 407 VAL CG2 C N N 408 VAL OXT O N N 409 VAL H H N N 410 VAL H2 H N N 411 VAL HA H N N 412 VAL HB H N N 413 VAL HG11 H N N 414 VAL HG12 H N N 415 VAL HG13 H N N 416 VAL HG21 H N N 417 VAL HG22 H N N 418 VAL HG23 H N N 419 VAL HXT H N N 420 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GDP PB O1B doub N N 70 GDP PB O2B sing N N 71 GDP PB O3B sing N N 72 GDP PB O3A sing N N 73 GDP O2B HOB2 sing N N 74 GDP O3B HOB3 sing N N 75 GDP O3A PA sing N N 76 GDP PA O1A doub N N 77 GDP PA O2A sing N N 78 GDP PA "O5'" sing N N 79 GDP O2A HOA2 sing N N 80 GDP "O5'" "C5'" sing N N 81 GDP "C5'" "C4'" sing N N 82 GDP "C5'" "H5'" sing N N 83 GDP "C5'" "H5''" sing N N 84 GDP "C4'" "O4'" sing N N 85 GDP "C4'" "C3'" sing N N 86 GDP "C4'" "H4'" sing N N 87 GDP "O4'" "C1'" sing N N 88 GDP "C3'" "O3'" sing N N 89 GDP "C3'" "C2'" sing N N 90 GDP "C3'" "H3'" sing N N 91 GDP "O3'" "HO3'" sing N N 92 GDP "C2'" "O2'" sing N N 93 GDP "C2'" "C1'" sing N N 94 GDP "C2'" "H2'" sing N N 95 GDP "O2'" "HO2'" sing N N 96 GDP "C1'" N9 sing N N 97 GDP "C1'" "H1'" sing N N 98 GDP N9 C8 sing Y N 99 GDP N9 C4 sing Y N 100 GDP C8 N7 doub Y N 101 GDP C8 H8 sing N N 102 GDP N7 C5 sing Y N 103 GDP C5 C6 sing N N 104 GDP C5 C4 doub Y N 105 GDP C6 O6 doub N N 106 GDP C6 N1 sing N N 107 GDP N1 C2 sing N N 108 GDP N1 HN1 sing N N 109 GDP C2 N2 sing N N 110 GDP C2 N3 doub N N 111 GDP N2 HN21 sing N N 112 GDP N2 HN22 sing N N 113 GDP N3 C4 sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DMD _pdbx_initial_refinement_model.details 'PDB ENTRY 3DMD' #