data_3EBY # _entry.id 3EBY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EBY pdb_00003eby 10.2210/pdb3eby/pdb RCSB RCSB049131 ? ? WWPDB D_1000049131 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391042 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3EBY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-08-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of the beta subunit of a putative aromatic-ring-hydroxylating dioxygenase (YP_001165631.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.75 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3EBY _cell.length_a 80.290 _cell.length_b 80.290 _cell.length_c 145.020 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EBY _symmetry.Int_Tables_number 155 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'beta subunit of a putative Aromatic-ring-hydroxylating dioxygenase' 18113.971 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 173 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SVAAEVAQVAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAV(MSE)YCDSKG (MSE)LADRVVALRKANVFPEHFNRHLIGRAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLSGGTVRLK SRTCIYDTLRIATLLATPI ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSVAAEVAQVAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKA NVFPEHFNRHLIGRAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLSGGTVRLKSRTCIYDTLRIATLLA TPI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 391042 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 VAL n 1 5 ALA n 1 6 ALA n 1 7 GLU n 1 8 VAL n 1 9 ALA n 1 10 GLN n 1 11 VAL n 1 12 ALA n 1 13 GLN n 1 14 SER n 1 15 ALA n 1 16 ILE n 1 17 ASP n 1 18 ASP n 1 19 PHE n 1 20 ASN n 1 21 ALA n 1 22 ALA n 1 23 TYR n 1 24 GLY n 1 25 LEU n 1 26 CYS n 1 27 LEU n 1 28 ASP n 1 29 ASP n 1 30 ASP n 1 31 ARG n 1 32 LEU n 1 33 GLU n 1 34 GLN n 1 35 TRP n 1 36 PRO n 1 37 THR n 1 38 LEU n 1 39 PHE n 1 40 VAL n 1 41 ASP n 1 42 ASP n 1 43 CYS n 1 44 LEU n 1 45 TYR n 1 46 GLN n 1 47 VAL n 1 48 ILE n 1 49 ALA n 1 50 ARG n 1 51 GLU n 1 52 ASN n 1 53 VAL n 1 54 ASP n 1 55 ASN n 1 56 GLY n 1 57 LEU n 1 58 PRO n 1 59 ALA n 1 60 ALA n 1 61 VAL n 1 62 MSE n 1 63 TYR n 1 64 CYS n 1 65 ASP n 1 66 SER n 1 67 LYS n 1 68 GLY n 1 69 MSE n 1 70 LEU n 1 71 ALA n 1 72 ASP n 1 73 ARG n 1 74 VAL n 1 75 VAL n 1 76 ALA n 1 77 LEU n 1 78 ARG n 1 79 LYS n 1 80 ALA n 1 81 ASN n 1 82 VAL n 1 83 PHE n 1 84 PRO n 1 85 GLU n 1 86 HIS n 1 87 PHE n 1 88 ASN n 1 89 ARG n 1 90 HIS n 1 91 LEU n 1 92 ILE n 1 93 GLY n 1 94 ARG n 1 95 ALA n 1 96 VAL n 1 97 ILE n 1 98 THR n 1 99 GLY n 1 100 VAL n 1 101 GLU n 1 102 GLY n 1 103 ASP n 1 104 GLN n 1 105 VAL n 1 106 SER n 1 107 ALA n 1 108 GLU n 1 109 ALA n 1 110 SER n 1 111 TYR n 1 112 VAL n 1 113 VAL n 1 114 PHE n 1 115 GLN n 1 116 THR n 1 117 ARG n 1 118 ASN n 1 119 ASP n 1 120 GLY n 1 121 GLU n 1 122 THR n 1 123 ARG n 1 124 ILE n 1 125 TYR n 1 126 ASN n 1 127 ALA n 1 128 GLY n 1 129 LYS n 1 130 TYR n 1 131 VAL n 1 132 ASP n 1 133 ARG n 1 134 PHE n 1 135 ASP n 1 136 LEU n 1 137 SER n 1 138 GLY n 1 139 GLY n 1 140 THR n 1 141 VAL n 1 142 ARG n 1 143 LEU n 1 144 LYS n 1 145 SER n 1 146 ARG n 1 147 THR n 1 148 CYS n 1 149 ILE n 1 150 TYR n 1 151 ASP n 1 152 THR n 1 153 LEU n 1 154 ARG n 1 155 ILE n 1 156 ALA n 1 157 THR n 1 158 LEU n 1 159 LEU n 1 160 ALA n 1 161 THR n 1 162 PRO n 1 163 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_001165631.1, Saro_3860' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Novosphingobium aromaticivorans DSM 12444' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 279238 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4XDU4_NOVAD _struct_ref.pdbx_db_accession A4XDU4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSVAAEVAQVAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKAN VFPEHFNRHLIGRAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLSGGTVRLKSRTCIYDTLRIATLLAT PI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EBY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A4XDU4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3EBY _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A4XDU4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3EBY # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M KCl, 20.0000% PEG-3350, No Buffer pH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-08-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97929 1.0 3 0.97915 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97929,0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3EBY _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 26.764 _reflns.number_obs 18394 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.percent_possible_obs 99.200 _reflns.B_iso_Wilson_estimate 21.006 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.890 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.75 1.81 9383 ? 3316 0.577 1.9 ? ? ? ? ? 97.10 1 1 1.81 1.89 10836 ? 3797 0.459 2.5 ? ? ? ? ? 99.50 2 1 1.89 1.97 9421 ? 3286 0.281 3.9 ? ? ? ? ? 99.70 3 1 1.97 2.07 9661 ? 3368 0.193 5.6 ? ? ? ? ? 99.50 4 1 2.07 2.20 10165 ? 3537 0.137 7.9 ? ? ? ? ? 99.50 5 1 2.20 2.37 10228 ? 3536 0.099 10.4 ? ? ? ? ? 99.50 6 1 2.37 2.61 10238 ? 3529 0.076 13.2 ? ? ? ? ? 99.30 7 1 2.61 2.99 10272 ? 3538 0.052 18.4 ? ? ? ? ? 99.50 8 1 2.99 3.76 10212 ? 3494 0.031 28.3 ? ? ? ? ? 99.30 9 1 3.76 26.764 10260 ? 3517 0.025 36.3 ? ? ? ? ? 99.00 10 1 # _refine.entry_id 3EBY _refine.ls_d_res_high 1.750 _refine.ls_d_res_low 26.764 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.820 _refine.ls_number_reflns_obs 18393 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.CHLORIDE ANION FROM CRYSTALLIZATION ARE MODELED INTO THIS STRUCTURE. ; _refine.ls_R_factor_obs 0.170 _refine.ls_R_factor_R_work 0.168 _refine.ls_R_factor_R_free 0.205 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 939 _refine.B_iso_mean 23.605 _refine.aniso_B[1][1] -0.670 _refine.aniso_B[2][2] -0.670 _refine.aniso_B[3][3] 1.000 _refine.aniso_B[1][2] -0.330 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.pdbx_overall_ESU_R 0.104 _refine.pdbx_overall_ESU_R_Free 0.104 _refine.overall_SU_ML 0.067 _refine.overall_SU_B 3.993 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 63.40 _refine.B_iso_min 9.97 _refine.occupancy_max 1.00 _refine.occupancy_min 0.33 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1170 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 1344 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 26.764 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1261 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 810 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1728 1.046 1.955 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1972 0.697 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 168 5.994 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 58 31.152 23.621 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 199 11.182 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 16.352 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 202 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1480 0.011 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 270 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 224 0.214 0.300 ? 'X-RAY DIFFRACTION' ? r_nbd_other 858 0.218 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 620 0.174 0.500 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 672 0.084 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 202 0.201 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.104 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 33 0.276 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 28 0.201 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other 1 0.001 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 887 2.733 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 330 0.687 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1312 3.462 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 491 4.283 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 416 5.655 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.751 _refine_ls_shell.d_res_low 1.796 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.180 _refine_ls_shell.number_reflns_R_work 1255 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.236 _refine_ls_shell.R_factor_R_free 0.326 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1326 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EBY _struct.title ;Crystal structure of the beta subunit of a putative aromatic-ring-hydroxylating dioxygenase (YP_001165631.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.75 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_001165631.1, the beta subunit of a putative aromatic-ring-hydroxylating dioxygenase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Dioxygenase, Unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.entry_id 3EBY # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 7 ? ASP A 29 ? GLU A 6 ASP A 28 1 ? 23 HELX_P HELX_P2 2 ARG A 31 ? THR A 37 ? ARG A 30 THR A 36 5 ? 7 HELX_P HELX_P3 3 GLU A 51 ? ASN A 55 ? GLU A 50 ASN A 54 5 ? 5 HELX_P HELX_P4 4 SER A 66 ? ALA A 80 ? SER A 65 ALA A 79 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 61 C A ? ? 1_555 A MSE 62 N ? ? A VAL 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A VAL 61 C B ? ? 1_555 A MSE 62 N ? ? A VAL 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A MSE 62 C ? ? ? 1_555 A TYR 63 N ? ? A MSE 61 A TYR 62 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A GLY 68 C ? ? ? 1_555 A MSE 69 N ? ? A GLY 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A MSE 69 C ? ? ? 1_555 A LEU 70 N ? ? A MSE 68 A LEU 69 1_555 ? ? ? ? ? ? ? 1.344 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 60 ? CYS A 64 ? ALA A 59 CYS A 63 A 2 PHE A 39 ? ALA A 49 ? PHE A 38 ALA A 48 A 3 ARG A 142 ? TYR A 150 ? ARG A 141 TYR A 149 A 4 THR A 122 ? ASP A 135 ? THR A 121 ASP A 134 A 5 GLN A 104 ? THR A 116 ? GLN A 103 THR A 115 A 6 PHE A 87 ? ILE A 92 ? PHE A 86 ILE A 91 B 1 ALA A 60 ? CYS A 64 ? ALA A 59 CYS A 63 B 2 PHE A 39 ? ALA A 49 ? PHE A 38 ALA A 48 B 3 ARG A 142 ? TYR A 150 ? ARG A 141 TYR A 149 B 4 THR A 122 ? ASP A 135 ? THR A 121 ASP A 134 B 5 GLN A 104 ? THR A 116 ? GLN A 103 THR A 115 B 6 VAL A 96 ? GLU A 101 ? VAL A 95 GLU A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 64 ? O CYS A 63 N TYR A 45 ? N TYR A 44 A 2 3 N GLN A 46 ? N GLN A 45 O CYS A 148 ? O CYS A 147 A 3 4 O ARG A 142 ? O ARG A 141 N ASP A 135 ? N ASP A 134 A 4 5 O PHE A 134 ? O PHE A 133 N VAL A 105 ? N VAL A 104 A 5 6 O PHE A 114 ? O PHE A 113 N ARG A 89 ? N ARG A 88 B 1 2 O CYS A 64 ? O CYS A 63 N TYR A 45 ? N TYR A 44 B 2 3 N GLN A 46 ? N GLN A 45 O CYS A 148 ? O CYS A 147 B 3 4 O ARG A 142 ? O ARG A 141 N ASP A 135 ? N ASP A 134 B 4 5 O PHE A 134 ? O PHE A 133 N VAL A 105 ? N VAL A 104 B 5 6 O GLU A 108 ? O GLU A 107 N VAL A 96 ? N VAL A 95 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 163 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 163' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id LEU _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 159 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id LEU _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 158 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _atom_sites.entry_id 3EBY _atom_sites.fract_transf_matrix[1][1] 0.012455 _atom_sites.fract_transf_matrix[1][2] 0.007191 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014382 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006896 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 VAL 4 3 ? ? ? A . n A 1 5 ALA 5 4 ? ? ? A . n A 1 6 ALA 6 5 ? ? ? A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 ALA 9 8 8 ALA ALA A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 VAL 11 10 10 VAL VAL A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 TYR 23 22 22 TYR TYR A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 CYS 26 25 25 CYS CYS A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 GLN 34 33 33 GLN GLN A . n A 1 35 TRP 35 34 34 TRP TRP A . n A 1 36 PRO 36 35 35 PRO PRO A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 PHE 39 38 38 PHE PHE A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 CYS 43 42 42 CYS CYS A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 GLN 46 45 45 GLN GLN A . n A 1 47 VAL 47 46 46 VAL VAL A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 ARG 50 49 49 ARG ARG A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 ASN 52 51 51 ASN ASN A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 ASN 55 54 54 ASN ASN A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 MSE 62 61 61 MSE MSE A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 CYS 64 63 63 CYS CYS A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 MSE 69 68 68 MSE MSE A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 ASP 72 71 71 ASP ASP A . n A 1 73 ARG 73 72 72 ARG ARG A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ARG 78 77 77 ARG ARG A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 VAL 82 81 ? ? ? A . n A 1 83 PHE 83 82 ? ? ? A . n A 1 84 PRO 84 83 ? ? ? A . n A 1 85 GLU 85 84 ? ? ? A . n A 1 86 HIS 86 85 85 HIS HIS A . n A 1 87 PHE 87 86 86 PHE PHE A . n A 1 88 ASN 88 87 87 ASN ASN A . n A 1 89 ARG 89 88 88 ARG ARG A . n A 1 90 HIS 90 89 89 HIS HIS A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 ILE 92 91 91 ILE ILE A . n A 1 93 GLY 93 92 92 GLY GLY A . n A 1 94 ARG 94 93 93 ARG ARG A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 GLU 101 100 100 GLU GLU A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 GLN 104 103 103 GLN GLN A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 SER 106 105 105 SER SER A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ALA 109 108 108 ALA ALA A . n A 1 110 SER 110 109 109 SER SER A . n A 1 111 TYR 111 110 110 TYR TYR A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 ASN 118 117 117 ASN ASN A . n A 1 119 ASP 119 118 118 ASP ASP A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 GLU 121 120 120 GLU GLU A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 ARG 123 122 122 ARG ARG A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 TYR 125 124 124 TYR TYR A . n A 1 126 ASN 126 125 125 ASN ASN A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 LYS 129 128 128 LYS LYS A . n A 1 130 TYR 130 129 129 TYR TYR A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 ASP 132 131 131 ASP ASP A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 PHE 134 133 133 PHE PHE A . n A 1 135 ASP 135 134 134 ASP ASP A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 SER 137 136 136 SER SER A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 VAL 141 140 140 VAL VAL A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 LYS 144 143 143 LYS LYS A . n A 1 145 SER 145 144 144 SER SER A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 THR 147 146 146 THR THR A . n A 1 148 CYS 148 147 147 CYS CYS A . n A 1 149 ILE 149 148 148 ILE ILE A . n A 1 150 TYR 150 149 149 TYR TYR A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 THR 152 151 151 THR THR A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 ARG 154 153 153 ARG ARG A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 ALA 156 155 155 ALA ALA A . n A 1 157 THR 157 156 156 THR THR A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 ALA 160 159 159 ALA ALA A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 PRO 162 161 161 PRO PRO A . n A 1 163 ILE 163 162 162 ILE ILE A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 163 1 CL CL A . C 3 HOH 1 164 2 HOH HOH A . C 3 HOH 2 165 3 HOH HOH A . C 3 HOH 3 166 4 HOH HOH A . C 3 HOH 4 167 5 HOH HOH A . C 3 HOH 5 168 6 HOH HOH A . C 3 HOH 6 169 7 HOH HOH A . C 3 HOH 7 170 8 HOH HOH A . C 3 HOH 8 171 9 HOH HOH A . C 3 HOH 9 172 10 HOH HOH A . C 3 HOH 10 173 11 HOH HOH A . C 3 HOH 11 174 12 HOH HOH A . C 3 HOH 12 175 13 HOH HOH A . C 3 HOH 13 176 14 HOH HOH A . C 3 HOH 14 177 15 HOH HOH A . C 3 HOH 15 178 16 HOH HOH A . C 3 HOH 16 179 17 HOH HOH A . C 3 HOH 17 180 18 HOH HOH A . C 3 HOH 18 181 19 HOH HOH A . C 3 HOH 19 182 20 HOH HOH A . C 3 HOH 20 183 21 HOH HOH A . C 3 HOH 21 184 22 HOH HOH A . C 3 HOH 22 185 23 HOH HOH A . C 3 HOH 23 186 24 HOH HOH A . C 3 HOH 24 187 25 HOH HOH A . C 3 HOH 25 188 26 HOH HOH A . C 3 HOH 26 189 27 HOH HOH A . C 3 HOH 27 190 28 HOH HOH A . C 3 HOH 28 191 29 HOH HOH A . C 3 HOH 29 192 30 HOH HOH A . C 3 HOH 30 193 31 HOH HOH A . C 3 HOH 31 194 32 HOH HOH A . C 3 HOH 32 195 33 HOH HOH A . C 3 HOH 33 196 34 HOH HOH A . C 3 HOH 34 197 35 HOH HOH A . C 3 HOH 35 198 36 HOH HOH A . C 3 HOH 36 199 37 HOH HOH A . C 3 HOH 37 200 38 HOH HOH A . C 3 HOH 38 201 39 HOH HOH A . C 3 HOH 39 202 40 HOH HOH A . C 3 HOH 40 203 41 HOH HOH A . C 3 HOH 41 204 42 HOH HOH A . C 3 HOH 42 205 43 HOH HOH A . C 3 HOH 43 206 44 HOH HOH A . C 3 HOH 44 207 45 HOH HOH A . C 3 HOH 45 208 46 HOH HOH A . C 3 HOH 46 209 47 HOH HOH A . C 3 HOH 47 210 48 HOH HOH A . C 3 HOH 48 211 49 HOH HOH A . C 3 HOH 49 212 50 HOH HOH A . C 3 HOH 50 213 51 HOH HOH A . C 3 HOH 51 214 52 HOH HOH A . C 3 HOH 52 215 53 HOH HOH A . C 3 HOH 53 216 54 HOH HOH A . C 3 HOH 54 217 55 HOH HOH A . C 3 HOH 55 218 56 HOH HOH A . C 3 HOH 56 219 57 HOH HOH A . C 3 HOH 57 220 58 HOH HOH A . C 3 HOH 58 221 59 HOH HOH A . C 3 HOH 59 222 60 HOH HOH A . C 3 HOH 60 223 61 HOH HOH A . C 3 HOH 61 224 62 HOH HOH A . C 3 HOH 62 225 63 HOH HOH A . C 3 HOH 63 226 64 HOH HOH A . C 3 HOH 64 227 65 HOH HOH A . C 3 HOH 65 228 66 HOH HOH A . C 3 HOH 66 229 67 HOH HOH A . C 3 HOH 67 230 68 HOH HOH A . C 3 HOH 68 231 69 HOH HOH A . C 3 HOH 69 232 70 HOH HOH A . C 3 HOH 70 233 71 HOH HOH A . C 3 HOH 71 234 72 HOH HOH A . C 3 HOH 72 235 73 HOH HOH A . C 3 HOH 73 236 74 HOH HOH A . C 3 HOH 74 237 75 HOH HOH A . C 3 HOH 75 238 76 HOH HOH A . C 3 HOH 76 239 77 HOH HOH A . C 3 HOH 77 240 78 HOH HOH A . C 3 HOH 78 241 79 HOH HOH A . C 3 HOH 79 242 80 HOH HOH A . C 3 HOH 80 243 81 HOH HOH A . C 3 HOH 81 244 82 HOH HOH A . C 3 HOH 82 245 83 HOH HOH A . C 3 HOH 83 246 84 HOH HOH A . C 3 HOH 84 247 85 HOH HOH A . C 3 HOH 85 248 86 HOH HOH A . C 3 HOH 86 249 87 HOH HOH A . C 3 HOH 87 250 88 HOH HOH A . C 3 HOH 88 251 89 HOH HOH A . C 3 HOH 89 252 90 HOH HOH A . C 3 HOH 90 253 91 HOH HOH A . C 3 HOH 91 254 92 HOH HOH A . C 3 HOH 92 255 93 HOH HOH A . C 3 HOH 93 256 94 HOH HOH A . C 3 HOH 94 257 95 HOH HOH A . C 3 HOH 95 258 96 HOH HOH A . C 3 HOH 96 259 97 HOH HOH A . C 3 HOH 97 260 98 HOH HOH A . C 3 HOH 98 261 99 HOH HOH A . C 3 HOH 99 262 100 HOH HOH A . C 3 HOH 100 263 101 HOH HOH A . C 3 HOH 101 264 102 HOH HOH A . C 3 HOH 102 265 103 HOH HOH A . C 3 HOH 103 266 104 HOH HOH A . C 3 HOH 104 267 105 HOH HOH A . C 3 HOH 105 268 106 HOH HOH A . C 3 HOH 106 269 107 HOH HOH A . C 3 HOH 107 270 108 HOH HOH A . C 3 HOH 108 271 109 HOH HOH A . C 3 HOH 109 272 110 HOH HOH A . C 3 HOH 110 273 111 HOH HOH A . C 3 HOH 111 274 112 HOH HOH A . C 3 HOH 112 275 113 HOH HOH A . C 3 HOH 113 276 114 HOH HOH A . C 3 HOH 114 277 115 HOH HOH A . C 3 HOH 115 278 116 HOH HOH A . C 3 HOH 116 279 117 HOH HOH A . C 3 HOH 117 280 118 HOH HOH A . C 3 HOH 118 281 119 HOH HOH A . C 3 HOH 119 282 120 HOH HOH A . C 3 HOH 120 283 121 HOH HOH A . C 3 HOH 121 284 122 HOH HOH A . C 3 HOH 122 285 123 HOH HOH A . C 3 HOH 123 286 124 HOH HOH A . C 3 HOH 124 287 125 HOH HOH A . C 3 HOH 125 288 126 HOH HOH A . C 3 HOH 126 289 127 HOH HOH A . C 3 HOH 127 290 128 HOH HOH A . C 3 HOH 128 291 129 HOH HOH A . C 3 HOH 129 292 130 HOH HOH A . C 3 HOH 130 293 131 HOH HOH A . C 3 HOH 131 294 132 HOH HOH A . C 3 HOH 132 295 133 HOH HOH A . C 3 HOH 133 296 134 HOH HOH A . C 3 HOH 134 297 135 HOH HOH A . C 3 HOH 135 298 136 HOH HOH A . C 3 HOH 136 299 137 HOH HOH A . C 3 HOH 137 300 138 HOH HOH A . C 3 HOH 138 301 139 HOH HOH A . C 3 HOH 139 302 140 HOH HOH A . C 3 HOH 140 303 141 HOH HOH A . C 3 HOH 141 304 142 HOH HOH A . C 3 HOH 142 305 143 HOH HOH A . C 3 HOH 143 306 144 HOH HOH A . C 3 HOH 144 307 145 HOH HOH A . C 3 HOH 145 308 146 HOH HOH A . C 3 HOH 146 309 147 HOH HOH A . C 3 HOH 147 310 148 HOH HOH A . C 3 HOH 148 311 149 HOH HOH A . C 3 HOH 149 312 150 HOH HOH A . C 3 HOH 150 313 151 HOH HOH A . C 3 HOH 151 314 152 HOH HOH A . C 3 HOH 152 315 153 HOH HOH A . C 3 HOH 153 316 154 HOH HOH A . C 3 HOH 154 317 155 HOH HOH A . C 3 HOH 155 318 156 HOH HOH A . C 3 HOH 156 319 157 HOH HOH A . C 3 HOH 157 320 158 HOH HOH A . C 3 HOH 158 321 159 HOH HOH A . C 3 HOH 159 322 160 HOH HOH A . C 3 HOH 160 323 161 HOH HOH A . C 3 HOH 161 324 162 HOH HOH A . C 3 HOH 162 325 163 HOH HOH A . C 3 HOH 163 326 164 HOH HOH A . C 3 HOH 164 327 165 HOH HOH A . C 3 HOH 165 328 166 HOH HOH A . C 3 HOH 166 329 167 HOH HOH A . C 3 HOH 167 330 168 HOH HOH A . C 3 HOH 168 331 169 HOH HOH A . C 3 HOH 169 332 170 HOH HOH A . C 3 HOH 170 333 171 HOH HOH A . C 3 HOH 171 334 172 HOH HOH A . C 3 HOH 172 335 173 HOH HOH A . C 3 HOH 173 336 174 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 62 A MSE 61 ? MET SELENOMETHIONINE 2 A MSE 69 A MSE 68 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5010 ? 1 MORE -24 ? 1 'SSA (A^2)' 20560 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 189 ? C HOH . 2 1 A HOH 293 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 10.6003 _pdbx_refine_tls.origin_y 11.2447 _pdbx_refine_tls.origin_z 36.5233 _pdbx_refine_tls.T[1][1] -0.0347 _pdbx_refine_tls.T[2][2] -0.0294 _pdbx_refine_tls.T[3][3] -0.0267 _pdbx_refine_tls.T[1][2] -0.0051 _pdbx_refine_tls.T[1][3] 0.0071 _pdbx_refine_tls.T[2][3] -0.0072 _pdbx_refine_tls.L[1][1] 1.1025 _pdbx_refine_tls.L[2][2] 0.9786 _pdbx_refine_tls.L[3][3] 0.4557 _pdbx_refine_tls.L[1][2] 0.2899 _pdbx_refine_tls.L[1][3] -0.2721 _pdbx_refine_tls.L[2][3] 0.1267 _pdbx_refine_tls.S[1][1] 0.0325 _pdbx_refine_tls.S[2][2] 0.0555 _pdbx_refine_tls.S[3][3] -0.0880 _pdbx_refine_tls.S[1][2] 0.0118 _pdbx_refine_tls.S[1][3] 0.1310 _pdbx_refine_tls.S[2][3] -0.1004 _pdbx_refine_tls.S[2][1] 0.0139 _pdbx_refine_tls.S[3][1] -0.0303 _pdbx_refine_tls.S[3][2] -0.0092 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 162 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_seq_id 6 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 7 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 163 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3EBY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 61 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 61 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.566 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.384 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 79 ? ? -106.60 61.18 2 1 ARG A 116 ? ? -104.70 -169.29 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 6 ? CG ? A GLU 7 CG 2 1 Y 1 A GLU 6 ? CD ? A GLU 7 CD 3 1 Y 1 A GLU 6 ? OE1 ? A GLU 7 OE1 4 1 Y 1 A GLU 6 ? OE2 ? A GLU 7 OE2 5 1 Y 1 A GLN 9 ? CD ? A GLN 10 CD 6 1 Y 1 A GLN 9 ? OE1 ? A GLN 10 OE1 7 1 Y 1 A GLN 9 ? NE2 ? A GLN 10 NE2 8 1 Y 1 A LYS 78 ? CE ? A LYS 79 CE 9 1 Y 1 A LYS 78 ? NZ ? A LYS 79 NZ 10 1 Y 1 A ASN 80 ? CG ? A ASN 81 CG 11 1 Y 1 A ASN 80 ? OD1 ? A ASN 81 OD1 12 1 Y 1 A ASN 80 ? ND2 ? A ASN 81 ND2 13 1 Y 1 A GLU 100 ? CD ? A GLU 101 CD 14 1 Y 1 A GLU 100 ? OE1 ? A GLU 101 OE1 15 1 Y 1 A GLU 100 ? OE2 ? A GLU 101 OE2 16 1 Y 1 A ARG 116 ? NE ? A ARG 117 NE 17 1 Y 1 A ARG 116 ? CZ ? A ARG 117 CZ 18 1 Y 1 A ARG 116 ? NH1 ? A ARG 117 NH1 19 1 Y 1 A ARG 116 ? NH2 ? A ARG 117 NH2 20 1 Y 1 A ASN 117 ? CG ? A ASN 118 CG 21 1 Y 1 A ASN 117 ? OD1 ? A ASN 118 OD1 22 1 Y 1 A ASN 117 ? ND2 ? A ASN 118 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A VAL 3 ? A VAL 4 5 1 Y 1 A ALA 4 ? A ALA 5 6 1 Y 1 A ALA 5 ? A ALA 6 7 1 Y 1 A VAL 81 ? A VAL 82 8 1 Y 1 A PHE 82 ? A PHE 83 9 1 Y 1 A PRO 83 ? A PRO 84 10 1 Y 1 A GLU 84 ? A GLU 85 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #