data_3EJH # _entry.id 3EJH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EJH pdb_00003ejh 10.2210/pdb3ejh/pdb RCSB RCSB049399 ? ? WWPDB D_1000049399 ? ? # _pdbx_database_status.entry_id 3EJH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Erat, M.C.' 1 'Lowe, E.D.' 2 'Campbell, I.D.' 3 'Vakonakis, I.' 4 # _citation.id primary _citation.title 'Identification and structural analysis of type I collagen sites in complex with fibronectin fragments.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 4195 _citation.page_last 4200 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19251642 _citation.pdbx_database_id_DOI 10.1073/pnas.0812516106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Erat, M.C.' 1 ? primary 'Slatter, D.A.' 2 ? primary 'Lowe, E.D.' 3 ? primary 'Millard, C.J.' 4 ? primary 'Farndale, R.W.' 5 ? primary 'Campbell, I.D.' 6 ? primary 'Vakonakis, I.' 7 ? # _cell.length_a 56.840 _cell.length_b 56.840 _cell.length_c 150.220 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3EJH _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3EJH _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Fibronectin 10891.985 2 ? 'N528Q, R534K' 8-9FnI ? 2 polymer syn 'Collagen type-I a1 chain' 2405.651 2 ? ? 'collagenase site C-terminal peptide' ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 105 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FN,Cold-insoluble globulin,CIG' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG EWHCQPLQTYPSS ; ;DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG EWHCQPLQTYPSS ; A,B ? 2 'polypeptide(L)' no yes 'GQRGVVGL(HYP)GQRGERGF(HYP)GL(HYP)GY' GQRGVVGLPGQRGERGFPGLPGY E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLN n 1 3 CYS n 1 4 ILE n 1 5 VAL n 1 6 ASP n 1 7 ASP n 1 8 ILE n 1 9 THR n 1 10 TYR n 1 11 ASN n 1 12 VAL n 1 13 GLN n 1 14 ASP n 1 15 THR n 1 16 PHE n 1 17 HIS n 1 18 LYS n 1 19 LYS n 1 20 HIS n 1 21 GLU n 1 22 GLU n 1 23 GLY n 1 24 HIS n 1 25 MET n 1 26 LEU n 1 27 ASN n 1 28 CYS n 1 29 THR n 1 30 CYS n 1 31 PHE n 1 32 GLY n 1 33 GLN n 1 34 GLY n 1 35 ARG n 1 36 GLY n 1 37 ARG n 1 38 TRP n 1 39 LYS n 1 40 CYS n 1 41 ASP n 1 42 PRO n 1 43 VAL n 1 44 ASP n 1 45 GLN n 1 46 CYS n 1 47 GLN n 1 48 ASP n 1 49 SER n 1 50 GLU n 1 51 THR n 1 52 GLY n 1 53 THR n 1 54 PHE n 1 55 TYR n 1 56 GLN n 1 57 ILE n 1 58 GLY n 1 59 ASP n 1 60 SER n 1 61 TRP n 1 62 GLU n 1 63 LYS n 1 64 TYR n 1 65 VAL n 1 66 HIS n 1 67 GLY n 1 68 VAL n 1 69 ARG n 1 70 TYR n 1 71 GLN n 1 72 CYS n 1 73 TYR n 1 74 CYS n 1 75 TYR n 1 76 GLY n 1 77 ARG n 1 78 GLY n 1 79 ILE n 1 80 GLY n 1 81 GLU n 1 82 TRP n 1 83 HIS n 1 84 CYS n 1 85 GLN n 1 86 PRO n 1 87 LEU n 1 88 GLN n 1 89 THR n 1 90 TYR n 1 91 PRO n 1 92 SER n 1 93 SER n 2 1 GLY n 2 2 GLN n 2 3 ARG n 2 4 GLY n 2 5 VAL n 2 6 VAL n 2 7 GLY n 2 8 LEU n 2 9 HYP n 2 10 GLY n 2 11 GLN n 2 12 ARG n 2 13 GLY n 2 14 GLU n 2 15 ARG n 2 16 GLY n 2 17 PHE n 2 18 HYP n 2 19 GLY n 2 20 LEU n 2 21 HYP n 2 22 GLY n 2 23 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 93 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'FN1, FN' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'Integration in the AOX1 locus' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain X-33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'Genomic integration' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;The peptide was chemically synthesized. The sequence of the peptide is naturally found in Homo sapiens (human) type-I collagen a1 chain. ; # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP FINC_HUMAN P02751 ? 1 ;DQCIVDDITYNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIG EWHCQPLQTYPSS ; 516 2 PDB 3EJH 3EJH ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EJH A 1 ? 93 ? P02751 516 ? 608 ? 516 608 2 2 3EJH E 1 ? 23 ? 3EJH 956 ? 978 ? 956 978 3 1 3EJH B 1 ? 93 ? P02751 516 ? 608 ? 516 608 4 2 3EJH F 1 ? 23 ? 3EJH 956 ? 978 ? 956 978 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EJH GLN A 13 ? UNP P02751 ASN 528 'engineered mutation' 528 1 1 3EJH LYS A 19 ? UNP P02751 ARG 534 'engineered mutation' 534 2 3 3EJH GLN B 13 ? UNP P02751 ASN 528 'engineered mutation' 528 3 3 3EJH LYS B 19 ? UNP P02751 ARG 534 'engineered mutation' 534 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3EJH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.5 M NaCl, 0.1 M BisTris pH 6.5 , VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-07-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9796 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9796 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 # _reflns.entry_id 3EJH _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 49.225 _reflns.number_all ? _reflns.number_obs 19940 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_netI_over_sigmaI 6.023 _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_redundancy 6.900 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.B_iso_Wilson_estimate 40.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.10 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 20451 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.571 _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.pdbx_Rsym_value 0.571 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 7.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2872 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3EJH _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 49.225 _refine.pdbx_ls_sigma_F 1.40 _refine.ls_percent_reflns_obs 100.0 _refine.ls_number_reflns_obs 17126 _refine.ls_R_factor_obs 0.211 _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.242 _refine.ls_percent_reflns_R_free 7.260 _refine.ls_number_reflns_R_free 1229 _refine.B_iso_mean 52.401 _refine.solvent_model_param_bsol 59.312 _refine.solvent_model_param_ksol 0.375 _refine.aniso_B[1][1] 4.431 _refine.aniso_B[2][2] 4.431 _refine.aniso_B[3][3] -8.861 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] -0.000 _refine.overall_SU_ML 0.330 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values ML _refine.overall_FOM_work_R_set 0.828 _refine.B_iso_max 144.75 _refine.B_iso_min 20.10 _refine.occupancy_max 1.00 _refine.occupancy_min 0.29 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB ENTRIES 2CG6, 2CG7' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RAMDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.details 'One TLS group per FnI domain and peptide chain' _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_ion_probe_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1737 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 1876 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 49.225 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 1916 0.008 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 2579 1.297 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 247 0.081 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 339 0.004 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 682 17.760 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 1 POSITIONAL A 477 ? ? 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 2 POSITIONAL B 477 0.108 ? 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? 2 1 POSITIONAL E 71 ? ? 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? 2 2 POSITIONAL F 71 0.053 ? 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.100 2.146 16 100.000 1803 . 0.235 0.276 . 136 . 1939 1803 . 'X-RAY DIFFRACTION' 2.146 2.196 16 100.000 1864 . 0.226 0.279 . 147 . 2011 1864 . 'X-RAY DIFFRACTION' 2.196 2.250 16 100.000 1808 . 0.234 0.303 . 147 . 1955 1808 . 'X-RAY DIFFRACTION' 2.250 2.311 16 100.000 1841 . 0.232 0.295 . 148 . 1989 1841 . 'X-RAY DIFFRACTION' 2.311 2.379 16 100.000 1825 . 0.247 0.302 . 144 . 1969 1825 . 'X-RAY DIFFRACTION' 2.379 2.456 16 100.000 1857 . 0.247 0.324 . 144 . 2001 1857 . 'X-RAY DIFFRACTION' 2.456 2.544 16 100.000 1808 . 0.236 0.318 . 136 . 1944 1808 . 'X-RAY DIFFRACTION' 2.544 2.646 16 100.000 1845 . 0.244 0.301 . 147 . 1992 1845 . 'X-RAY DIFFRACTION' 2.646 2.766 16 100.000 1831 . 0.223 0.242 . 138 . 1969 1831 . 'X-RAY DIFFRACTION' 2.766 2.912 16 100.000 1871 . 0.214 0.283 . 146 . 2017 1871 . 'X-RAY DIFFRACTION' 2.912 3.095 16 100.000 1830 . 0.234 0.309 . 138 . 1968 1830 . 'X-RAY DIFFRACTION' 3.095 3.333 16 100.000 1837 . 0.201 0.273 . 145 . 1982 1837 . 'X-RAY DIFFRACTION' 3.333 3.669 16 100.000 1839 . 0.184 0.182 . 148 . 1987 1839 . 'X-RAY DIFFRACTION' 3.669 4.199 16 100.000 1818 . 0.166 0.170 . 152 . 1970 1818 . 'X-RAY DIFFRACTION' 4.199 5.290 16 100.000 1840 . 0.166 0.202 . 143 . 1983 1840 . 'X-RAY DIFFRACTION' 5.290 49.238 16 98.000 1817 . 0.197 0.224 . 138 . 1955 1817 . 'X-RAY DIFFRACTION' # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.261943 0.313324 0.912805 0.476324 0.780628 -0.404642 -0.839346 0.540784 0.055237 -25.460899 0.766322 -25.162500 2 given ? 0.247755 0.367001 0.896620 0.482008 0.756112 -0.442677 -0.840408 0.541854 0.010433 -27.254200 1.154350 -25.590500 # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 '(chain A and not (resseq 546:552 or resseq 558 or resseq 578:587 or resseq 592:594 or resseq 598:603)) or chain C' 1 2 '(chain B and not (resseq 546:552 or resseq 558 or resseq 578:587 or resseq 592:594 or resseq 598:603)) or chain D' 2 1 'chain E and resseq 961:973 and not (resname HXP or resname HYP)' 2 2 'chain F and resseq 961:973 and not (resname HXP or resname HYP)' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A ASP 1 . A PRO 91 . A ASP 516 A PRO 606 ? ? 1 2 1 C ASP 1 . C LEU 87 . B ASP 516 B LEU 602 ? ? 2 1 1 B VAL 5 . B GLY 19 . E VAL 960 E GLY 974 ? ? 2 2 1 D GLY 1 . D TYR 23 . F GLY 956 F TYR 978 ? ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 3EJH _struct.title 'Crystal Structure of the Fibronectin 8-9FnI Domain Pair in Complex with a Type-I Collagen Peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EJH _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;fibronectin, collagen, protein complex, collagenase site, Acute phase, Cell adhesion, Disease mutation, Extracellular matrix, Glycoprotein, Heparin-binding, Phosphoprotein, Pyrrolidone carboxylic acid, Secreted, Sulfation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 518 A CYS 545 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 543 A CYS 555 1_555 ? ? ? ? ? ? ? 2.079 ? ? disulf3 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 74 SG ? ? A CYS 561 A CYS 589 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? A CYS 72 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 587 A CYS 599 1_555 ? ? ? ? ? ? ? 2.057 ? ? disulf5 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 30 SG ? ? B CYS 518 B CYS 545 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf6 disulf ? ? C CYS 28 SG ? ? ? 1_555 C CYS 40 SG ? ? B CYS 543 B CYS 555 1_555 ? ? ? ? ? ? ? 2.073 ? ? disulf7 disulf ? ? C CYS 46 SG ? ? ? 1_555 C CYS 74 SG ? ? B CYS 561 B CYS 589 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf8 disulf ? ? C CYS 72 SG ? ? ? 1_555 C CYS 84 SG ? ? B CYS 587 B CYS 599 1_555 ? ? ? ? ? ? ? 2.042 ? ? covale1 covale one ? E NAG . C1 ? ? ? 1_555 A ASN 27 ND2 ? ? A NAG 1 A ASN 542 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation covale2 covale both ? B LEU 8 C ? ? ? 1_555 B HYP 9 N ? ? E LEU 963 E HYP 964 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? B HYP 9 C ? ? ? 1_555 B GLY 10 N ? ? E HYP 964 E GLY 965 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? B PHE 17 C ? ? ? 1_555 B HYP 18 N ? ? E PHE 972 E HYP 973 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? B HYP 18 C ? ? ? 1_555 B GLY 19 N ? ? E HYP 973 E GLY 974 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale one ? F NAG . C1 ? ? ? 1_555 C ASN 27 ND2 ? ? B NAG 1 B ASN 542 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale7 covale both ? D LEU 8 C ? ? ? 1_555 D HYP 9 N ? ? F LEU 963 F HYP 964 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? D HYP 9 C ? ? ? 1_555 D GLY 10 N ? ? F HYP 964 F GLY 965 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? D PHE 17 C ? ? ? 1_555 D HYP 18 N ? ? F PHE 972 F HYP 973 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? D HYP 18 C ? ? ? 1_555 D GLY 19 N ? ? F HYP 973 F GLY 974 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale11 covale both ? D LEU 20 C ? ? ? 1_555 D HYP 21 N ? ? F LEU 975 F HYP 976 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale12 covale both ? D HYP 21 C ? ? ? 1_555 D GLY 22 N ? ? F HYP 976 F GLY 977 1_555 ? ? ? ? ? ? ? 1.328 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 8 ? C ? 2 ? D ? 3 ? E ? 2 ? F ? 2 ? G ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? VAL A 5 ? GLN A 517 VAL A 520 A 2 ILE A 8 ? ASN A 11 ? ILE A 523 ASN A 526 B 1 GLN B 11 ? GLY B 13 ? GLN E 966 GLY E 968 B 2 ARG A 37 ? PRO A 42 ? ARG A 552 PRO A 557 B 3 MET A 25 ? GLY A 32 ? MET A 540 GLY A 547 B 4 ASP A 14 ? LYS A 19 ? ASP A 529 LYS A 534 B 5 GLY D 10 ? GLY D 13 ? GLY F 965 GLY F 968 B 6 ARG C 37 ? PRO C 42 ? ARG B 552 PRO B 557 B 7 MET C 25 ? GLY C 32 ? MET B 540 GLY B 547 B 8 THR C 15 ? LYS C 19 ? THR B 530 LYS B 534 C 1 GLN A 45 ? GLN A 47 ? GLN A 560 GLN A 562 C 2 PHE A 54 ? GLN A 56 ? PHE A 569 GLN A 571 D 1 SER A 60 ? LYS A 63 ? SER A 575 LYS A 578 D 2 TYR A 70 ? GLY A 76 ? TYR A 585 GLY A 591 D 3 GLU A 81 ? PRO A 86 ? GLU A 596 PRO A 601 E 1 GLN C 2 ? VAL C 5 ? GLN B 517 VAL B 520 E 2 ILE C 8 ? ASN C 11 ? ILE B 523 ASN B 526 F 1 GLN C 45 ? GLN C 47 ? GLN B 560 GLN B 562 F 2 PHE C 54 ? GLN C 56 ? PHE B 569 GLN B 571 G 1 SER C 60 ? VAL C 65 ? SER B 575 VAL B 580 G 2 VAL C 68 ? GLY C 76 ? VAL B 583 GLY B 591 G 3 GLU C 81 ? PRO C 86 ? GLU B 596 PRO B 601 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 3 ? N CYS A 518 O TYR A 10 ? O TYR A 525 B 1 2 O GLN B 11 ? O GLN E 966 N CYS A 40 ? N CYS A 555 B 2 3 O ASP A 41 ? O ASP A 556 N ASN A 27 ? N ASN A 542 B 3 4 O CYS A 28 ? O CYS A 543 N PHE A 16 ? N PHE A 531 B 4 5 N THR A 15 ? N THR A 530 O GLY D 10 ? O GLY F 965 B 5 6 O GLN D 11 ? O GLN F 966 N CYS C 40 ? N CYS B 555 B 6 7 O ASP C 41 ? O ASP B 556 N ASN C 27 ? N ASN B 542 B 7 8 O CYS C 28 ? O CYS B 543 N PHE C 16 ? N PHE B 531 C 1 2 N CYS A 46 ? N CYS A 561 O TYR A 55 ? O TYR A 570 D 1 2 N TRP A 61 ? N TRP A 576 O CYS A 72 ? O CYS A 587 D 2 3 N GLN A 71 ? N GLN A 586 O GLN A 85 ? O GLN A 600 E 1 2 N CYS C 3 ? N CYS B 518 O TYR C 10 ? O TYR B 525 F 1 2 N CYS C 46 ? N CYS B 561 O TYR C 55 ? O TYR B 570 G 1 2 N LYS C 63 ? N LYS B 578 O TYR C 70 ? O TYR B 585 G 2 3 N GLN C 71 ? N GLN B 586 O GLN C 85 ? O GLN B 600 # _atom_sites.entry_id 3EJH _atom_sites.fract_transf_matrix[1][1] 0.017593 _atom_sites.fract_transf_matrix[1][2] 0.010157 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020315 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006657 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'HYP E 964 HAS WRONG CHIRALITY AT ATOM CG' 2 'HYP E 973 HAS WRONG CHIRALITY AT ATOM CG' 3 'HYP F 976 HAS WRONG CHIRALITY AT ATOM CG' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 516 516 ASP ASP A . n A 1 2 GLN 2 517 517 GLN GLN A . n A 1 3 CYS 3 518 518 CYS CYS A . n A 1 4 ILE 4 519 519 ILE ILE A . n A 1 5 VAL 5 520 520 VAL VAL A . n A 1 6 ASP 6 521 521 ASP ASP A . n A 1 7 ASP 7 522 522 ASP ASP A . n A 1 8 ILE 8 523 523 ILE ILE A . n A 1 9 THR 9 524 524 THR THR A . n A 1 10 TYR 10 525 525 TYR TYR A . n A 1 11 ASN 11 526 526 ASN ASN A . n A 1 12 VAL 12 527 527 VAL VAL A . n A 1 13 GLN 13 528 528 GLN GLN A . n A 1 14 ASP 14 529 529 ASP ASP A . n A 1 15 THR 15 530 530 THR THR A . n A 1 16 PHE 16 531 531 PHE PHE A . n A 1 17 HIS 17 532 532 HIS HIS A . n A 1 18 LYS 18 533 533 LYS LYS A . n A 1 19 LYS 19 534 534 LYS LYS A . n A 1 20 HIS 20 535 535 HIS HIS A . n A 1 21 GLU 21 536 536 GLU GLU A . n A 1 22 GLU 22 537 537 GLU GLU A . n A 1 23 GLY 23 538 538 GLY GLY A . n A 1 24 HIS 24 539 539 HIS HIS A . n A 1 25 MET 25 540 540 MET MET A . n A 1 26 LEU 26 541 541 LEU LEU A . n A 1 27 ASN 27 542 542 ASN ASN A . n A 1 28 CYS 28 543 543 CYS CYS A . n A 1 29 THR 29 544 544 THR THR A . n A 1 30 CYS 30 545 545 CYS CYS A . n A 1 31 PHE 31 546 546 PHE PHE A . n A 1 32 GLY 32 547 547 GLY GLY A . n A 1 33 GLN 33 548 548 GLN GLN A . n A 1 34 GLY 34 549 549 GLY GLY A . n A 1 35 ARG 35 550 550 ARG ARG A . n A 1 36 GLY 36 551 551 GLY GLY A . n A 1 37 ARG 37 552 552 ARG ARG A . n A 1 38 TRP 38 553 553 TRP TRP A . n A 1 39 LYS 39 554 554 LYS LYS A . n A 1 40 CYS 40 555 555 CYS CYS A . n A 1 41 ASP 41 556 556 ASP ASP A . n A 1 42 PRO 42 557 557 PRO PRO A . n A 1 43 VAL 43 558 558 VAL VAL A . n A 1 44 ASP 44 559 559 ASP ASP A . n A 1 45 GLN 45 560 560 GLN GLN A . n A 1 46 CYS 46 561 561 CYS CYS A . n A 1 47 GLN 47 562 562 GLN GLN A . n A 1 48 ASP 48 563 563 ASP ASP A . n A 1 49 SER 49 564 564 SER SER A . n A 1 50 GLU 50 565 565 GLU GLU A . n A 1 51 THR 51 566 566 THR THR A . n A 1 52 GLY 52 567 567 GLY GLY A . n A 1 53 THR 53 568 568 THR THR A . n A 1 54 PHE 54 569 569 PHE PHE A . n A 1 55 TYR 55 570 570 TYR TYR A . n A 1 56 GLN 56 571 571 GLN GLN A . n A 1 57 ILE 57 572 572 ILE ILE A . n A 1 58 GLY 58 573 573 GLY GLY A . n A 1 59 ASP 59 574 574 ASP ASP A . n A 1 60 SER 60 575 575 SER SER A . n A 1 61 TRP 61 576 576 TRP TRP A . n A 1 62 GLU 62 577 577 GLU GLU A . n A 1 63 LYS 63 578 578 LYS LYS A . n A 1 64 TYR 64 579 579 TYR TYR A . n A 1 65 VAL 65 580 580 VAL VAL A . n A 1 66 HIS 66 581 581 HIS HIS A . n A 1 67 GLY 67 582 582 GLY GLY A . n A 1 68 VAL 68 583 583 VAL VAL A . n A 1 69 ARG 69 584 584 ARG ARG A . n A 1 70 TYR 70 585 585 TYR TYR A . n A 1 71 GLN 71 586 586 GLN GLN A . n A 1 72 CYS 72 587 587 CYS CYS A . n A 1 73 TYR 73 588 588 TYR TYR A . n A 1 74 CYS 74 589 589 CYS CYS A . n A 1 75 TYR 75 590 590 TYR TYR A . n A 1 76 GLY 76 591 591 GLY GLY A . n A 1 77 ARG 77 592 592 ARG ARG A . n A 1 78 GLY 78 593 593 GLY GLY A . n A 1 79 ILE 79 594 594 ILE ILE A . n A 1 80 GLY 80 595 595 GLY GLY A . n A 1 81 GLU 81 596 596 GLU GLU A . n A 1 82 TRP 82 597 597 TRP TRP A . n A 1 83 HIS 83 598 598 HIS HIS A . n A 1 84 CYS 84 599 599 CYS CYS A . n A 1 85 GLN 85 600 600 GLN GLN A . n A 1 86 PRO 86 601 601 PRO PRO A . n A 1 87 LEU 87 602 602 LEU LEU A . n A 1 88 GLN 88 603 603 GLN GLN A . n A 1 89 THR 89 604 604 THR THR A . n A 1 90 TYR 90 605 605 TYR TYR A . n A 1 91 PRO 91 606 606 PRO PRO A . n A 1 92 SER 92 607 ? ? ? A . n A 1 93 SER 93 608 ? ? ? A . n B 2 1 GLY 1 956 ? ? ? E . n B 2 2 GLN 2 957 ? ? ? E . n B 2 3 ARG 3 958 ? ? ? E . n B 2 4 GLY 4 959 ? ? ? E . n B 2 5 VAL 5 960 960 VAL VAL E . n B 2 6 VAL 6 961 961 VAL VAL E . n B 2 7 GLY 7 962 962 GLY GLY E . n B 2 8 LEU 8 963 963 LEU LEU E . n B 2 9 HYP 9 964 964 HYP HYP E . n B 2 10 GLY 10 965 965 GLY GLY E . n B 2 11 GLN 11 966 966 GLN GLN E . n B 2 12 ARG 12 967 967 ARG ARG E . n B 2 13 GLY 13 968 968 GLY GLY E . n B 2 14 GLU 14 969 969 GLU GLU E . n B 2 15 ARG 15 970 970 ARG ARG E . n B 2 16 GLY 16 971 971 GLY GLY E . n B 2 17 PHE 17 972 972 PHE PHE E . n B 2 18 HYP 18 973 973 HYP HYP E . n B 2 19 GLY 19 974 974 GLY GLY E . n B 2 20 LEU 20 975 ? ? ? E . n B 2 21 HYP 21 976 ? ? ? E . n B 2 22 GLY 22 977 ? ? ? E . n B 2 23 TYR 23 978 ? ? ? E . n C 1 1 ASP 1 516 516 ASP ASP B . n C 1 2 GLN 2 517 517 GLN GLN B . n C 1 3 CYS 3 518 518 CYS CYS B . n C 1 4 ILE 4 519 519 ILE ILE B . n C 1 5 VAL 5 520 520 VAL VAL B . n C 1 6 ASP 6 521 521 ASP ASP B . n C 1 7 ASP 7 522 522 ASP ASP B . n C 1 8 ILE 8 523 523 ILE ILE B . n C 1 9 THR 9 524 524 THR THR B . n C 1 10 TYR 10 525 525 TYR TYR B . n C 1 11 ASN 11 526 526 ASN ASN B . n C 1 12 VAL 12 527 527 VAL VAL B . n C 1 13 GLN 13 528 528 GLN GLN B . n C 1 14 ASP 14 529 529 ASP ASP B . n C 1 15 THR 15 530 530 THR THR B . n C 1 16 PHE 16 531 531 PHE PHE B . n C 1 17 HIS 17 532 532 HIS HIS B . n C 1 18 LYS 18 533 533 LYS LYS B . n C 1 19 LYS 19 534 534 LYS LYS B . n C 1 20 HIS 20 535 535 HIS HIS B . n C 1 21 GLU 21 536 536 GLU GLU B . n C 1 22 GLU 22 537 537 GLU GLU B . n C 1 23 GLY 23 538 538 GLY GLY B . n C 1 24 HIS 24 539 539 HIS HIS B . n C 1 25 MET 25 540 540 MET MET B . n C 1 26 LEU 26 541 541 LEU LEU B . n C 1 27 ASN 27 542 542 ASN ASN B . n C 1 28 CYS 28 543 543 CYS CYS B . n C 1 29 THR 29 544 544 THR THR B . n C 1 30 CYS 30 545 545 CYS CYS B . n C 1 31 PHE 31 546 546 PHE PHE B . n C 1 32 GLY 32 547 547 GLY GLY B . n C 1 33 GLN 33 548 548 GLN GLN B . n C 1 34 GLY 34 549 549 GLY GLY B . n C 1 35 ARG 35 550 550 ARG ARG B . n C 1 36 GLY 36 551 551 GLY GLY B . n C 1 37 ARG 37 552 552 ARG ARG B . n C 1 38 TRP 38 553 553 TRP TRP B . n C 1 39 LYS 39 554 554 LYS LYS B . n C 1 40 CYS 40 555 555 CYS CYS B . n C 1 41 ASP 41 556 556 ASP ASP B . n C 1 42 PRO 42 557 557 PRO PRO B . n C 1 43 VAL 43 558 558 VAL VAL B . n C 1 44 ASP 44 559 559 ASP ASP B . n C 1 45 GLN 45 560 560 GLN GLN B . n C 1 46 CYS 46 561 561 CYS CYS B . n C 1 47 GLN 47 562 562 GLN GLN B . n C 1 48 ASP 48 563 563 ASP ASP B . n C 1 49 SER 49 564 564 SER SER B . n C 1 50 GLU 50 565 565 GLU GLU B . n C 1 51 THR 51 566 566 THR THR B . n C 1 52 GLY 52 567 567 GLY GLY B . n C 1 53 THR 53 568 568 THR THR B . n C 1 54 PHE 54 569 569 PHE PHE B . n C 1 55 TYR 55 570 570 TYR TYR B . n C 1 56 GLN 56 571 571 GLN GLN B . n C 1 57 ILE 57 572 572 ILE ILE B . n C 1 58 GLY 58 573 573 GLY GLY B . n C 1 59 ASP 59 574 574 ASP ASP B . n C 1 60 SER 60 575 575 SER SER B . n C 1 61 TRP 61 576 576 TRP TRP B . n C 1 62 GLU 62 577 577 GLU GLU B . n C 1 63 LYS 63 578 578 LYS LYS B . n C 1 64 TYR 64 579 579 TYR TYR B . n C 1 65 VAL 65 580 580 VAL VAL B . n C 1 66 HIS 66 581 581 HIS HIS B . n C 1 67 GLY 67 582 582 GLY GLY B . n C 1 68 VAL 68 583 583 VAL VAL B . n C 1 69 ARG 69 584 584 ARG ARG B . n C 1 70 TYR 70 585 585 TYR TYR B . n C 1 71 GLN 71 586 586 GLN GLN B . n C 1 72 CYS 72 587 587 CYS CYS B . n C 1 73 TYR 73 588 588 TYR TYR B . n C 1 74 CYS 74 589 589 CYS CYS B . n C 1 75 TYR 75 590 590 TYR TYR B . n C 1 76 GLY 76 591 591 GLY GLY B . n C 1 77 ARG 77 592 592 ARG ARG B . n C 1 78 GLY 78 593 593 GLY GLY B . n C 1 79 ILE 79 594 594 ILE ILE B . n C 1 80 GLY 80 595 595 GLY GLY B . n C 1 81 GLU 81 596 596 GLU GLU B . n C 1 82 TRP 82 597 597 TRP TRP B . n C 1 83 HIS 83 598 598 HIS HIS B . n C 1 84 CYS 84 599 599 CYS CYS B . n C 1 85 GLN 85 600 600 GLN GLN B . n C 1 86 PRO 86 601 601 PRO PRO B . n C 1 87 LEU 87 602 602 LEU LEU B . n C 1 88 GLN 88 603 ? ? ? B . n C 1 89 THR 89 604 ? ? ? B . n C 1 90 TYR 90 605 ? ? ? B . n C 1 91 PRO 91 606 ? ? ? B . n C 1 92 SER 92 607 ? ? ? B . n C 1 93 SER 93 608 ? ? ? B . n D 2 1 GLY 1 956 956 GLY GLY F . n D 2 2 GLN 2 957 957 GLN GLN F . n D 2 3 ARG 3 958 958 ARG ARG F . n D 2 4 GLY 4 959 ? ? ? F . n D 2 5 VAL 5 960 960 VAL VAL F . n D 2 6 VAL 6 961 961 VAL VAL F . n D 2 7 GLY 7 962 962 GLY GLY F . n D 2 8 LEU 8 963 963 LEU LEU F . n D 2 9 HYP 9 964 964 HYP HYP F . n D 2 10 GLY 10 965 965 GLY GLY F . n D 2 11 GLN 11 966 966 GLN GLN F . n D 2 12 ARG 12 967 967 ARG ARG F . n D 2 13 GLY 13 968 968 GLY GLY F . n D 2 14 GLU 14 969 969 GLU GLU F . n D 2 15 ARG 15 970 970 ARG ARG F . n D 2 16 GLY 16 971 971 GLY GLY F . n D 2 17 PHE 17 972 972 PHE PHE F . n D 2 18 HYP 18 973 973 HYP HYP F . n D 2 19 GLY 19 974 974 GLY GLY F . n D 2 20 LEU 20 975 975 LEU LEU F . n D 2 21 HYP 21 976 976 HYP HYP F . n D 2 22 GLY 22 977 977 GLY GLY F . n D 2 23 TYR 23 978 978 TYR TYR F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG 1 1 1 NAG NAG A . F 3 NAG 1 1 1 NAG NAG B . G 4 GOL 1 609 1 GOL GOL B . H 5 HOH 1 76 76 HOH HOH A . H 5 HOH 2 80 80 HOH HOH A . H 5 HOH 3 609 1 HOH HOH A . H 5 HOH 4 610 3 HOH HOH A . H 5 HOH 5 611 5 HOH HOH A . H 5 HOH 6 612 10 HOH HOH A . H 5 HOH 7 613 12 HOH HOH A . H 5 HOH 8 614 13 HOH HOH A . H 5 HOH 9 615 14 HOH HOH A . H 5 HOH 10 616 15 HOH HOH A . H 5 HOH 11 617 16 HOH HOH A . H 5 HOH 12 618 19 HOH HOH A . H 5 HOH 13 619 21 HOH HOH A . H 5 HOH 14 620 22 HOH HOH A . H 5 HOH 15 621 25 HOH HOH A . H 5 HOH 16 622 27 HOH HOH A . H 5 HOH 17 623 29 HOH HOH A . H 5 HOH 18 624 30 HOH HOH A . H 5 HOH 19 625 31 HOH HOH A . H 5 HOH 20 626 35 HOH HOH A . H 5 HOH 21 627 39 HOH HOH A . H 5 HOH 22 628 45 HOH HOH A . H 5 HOH 23 629 46 HOH HOH A . H 5 HOH 24 630 48 HOH HOH A . H 5 HOH 25 631 49 HOH HOH A . H 5 HOH 26 632 50 HOH HOH A . H 5 HOH 27 633 52 HOH HOH A . H 5 HOH 28 634 53 HOH HOH A . H 5 HOH 29 635 61 HOH HOH A . H 5 HOH 30 636 62 HOH HOH A . H 5 HOH 31 637 64 HOH HOH A . H 5 HOH 32 638 65 HOH HOH A . H 5 HOH 33 639 66 HOH HOH A . H 5 HOH 34 640 68 HOH HOH A . H 5 HOH 35 641 70 HOH HOH A . H 5 HOH 36 642 72 HOH HOH A . H 5 HOH 37 643 73 HOH HOH A . H 5 HOH 38 644 75 HOH HOH A . H 5 HOH 39 645 78 HOH HOH A . H 5 HOH 40 646 79 HOH HOH A . H 5 HOH 41 647 81 HOH HOH A . H 5 HOH 42 648 83 HOH HOH A . H 5 HOH 43 649 87 HOH HOH A . H 5 HOH 44 650 89 HOH HOH A . H 5 HOH 45 651 94 HOH HOH A . H 5 HOH 46 652 96 HOH HOH A . H 5 HOH 47 653 97 HOH HOH A . H 5 HOH 48 654 99 HOH HOH A . H 5 HOH 49 655 101 HOH HOH A . H 5 HOH 50 656 103 HOH HOH A . I 5 HOH 1 26 26 HOH HOH E . I 5 HOH 2 32 32 HOH HOH E . I 5 HOH 3 41 41 HOH HOH E . I 5 HOH 4 44 44 HOH HOH E . I 5 HOH 5 67 67 HOH HOH E . I 5 HOH 6 71 71 HOH HOH E . I 5 HOH 7 84 84 HOH HOH E . I 5 HOH 8 91 91 HOH HOH E . I 5 HOH 9 92 92 HOH HOH E . I 5 HOH 10 105 105 HOH HOH E . J 5 HOH 1 2 2 HOH HOH B . J 5 HOH 2 4 4 HOH HOH B . J 5 HOH 3 6 6 HOH HOH B . J 5 HOH 4 7 7 HOH HOH B . J 5 HOH 5 8 8 HOH HOH B . J 5 HOH 6 9 9 HOH HOH B . J 5 HOH 7 11 11 HOH HOH B . J 5 HOH 8 17 17 HOH HOH B . J 5 HOH 9 20 20 HOH HOH B . J 5 HOH 10 23 23 HOH HOH B . J 5 HOH 11 24 24 HOH HOH B . J 5 HOH 12 33 33 HOH HOH B . J 5 HOH 13 34 34 HOH HOH B . J 5 HOH 14 37 37 HOH HOH B . J 5 HOH 15 38 38 HOH HOH B . J 5 HOH 16 43 43 HOH HOH B . J 5 HOH 17 47 47 HOH HOH B . J 5 HOH 18 51 51 HOH HOH B . J 5 HOH 19 54 54 HOH HOH B . J 5 HOH 20 55 55 HOH HOH B . J 5 HOH 21 56 56 HOH HOH B . J 5 HOH 22 57 57 HOH HOH B . J 5 HOH 23 58 58 HOH HOH B . J 5 HOH 24 59 59 HOH HOH B . J 5 HOH 25 60 60 HOH HOH B . J 5 HOH 26 63 63 HOH HOH B . J 5 HOH 27 82 82 HOH HOH B . J 5 HOH 28 85 85 HOH HOH B . J 5 HOH 29 86 86 HOH HOH B . J 5 HOH 30 88 88 HOH HOH B . J 5 HOH 31 90 90 HOH HOH B . J 5 HOH 32 93 93 HOH HOH B . J 5 HOH 33 95 95 HOH HOH B . J 5 HOH 34 98 98 HOH HOH B . J 5 HOH 35 102 102 HOH HOH B . K 5 HOH 1 18 18 HOH HOH F . K 5 HOH 2 28 28 HOH HOH F . K 5 HOH 3 36 36 HOH HOH F . K 5 HOH 4 40 40 HOH HOH F . K 5 HOH 5 42 42 HOH HOH F . K 5 HOH 6 69 69 HOH HOH F . K 5 HOH 7 74 74 HOH HOH F . K 5 HOH 8 77 77 HOH HOH F . K 5 HOH 9 100 100 HOH HOH F . K 5 HOH 10 104 104 HOH HOH F . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 27 A ASN 542 ? ASN 'GLYCOSYLATION SITE' 2 C ASN 27 B ASN 542 ? ASN 'GLYCOSYLATION SITE' 3 B HYP 9 E HYP 964 ? PRO 4-HYDROXYPROLINE 4 B HYP 18 E HYP 973 ? PRO 4-HYDROXYPROLINE 5 D HYP 9 F HYP 964 ? PRO 4-HYDROXYPROLINE 6 D HYP 18 F HYP 973 ? PRO 4-HYDROXYPROLINE 7 D HYP 21 F HYP 976 ? PRO 4-HYDROXYPROLINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,H,I 2 1 C,D,F,G,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 650 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-16 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2021-10-20 6 'Structure model' 1 5 2023-08-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Source and taxonomy' 10 5 'Structure model' 'Structure summary' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_PDB_caveat 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site 8 4 'Structure model' struct_site_gen 9 5 'Structure model' chem_comp 10 5 'Structure model' database_2 11 5 'Structure model' entity_name_com 12 5 'Structure model' entity_src_gen 13 5 'Structure model' pdbx_entity_src_syn 14 5 'Structure model' struct_ref 15 5 'Structure model' struct_ref_seq 16 5 'Structure model' struct_ref_seq_dif 17 6 'Structure model' chem_comp_atom 18 6 'Structure model' chem_comp_bond 19 6 'Structure model' pdbx_initial_refinement_model 20 6 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_dist_value' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.pdbx_role' 8 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 5 'Structure model' '_chem_comp.pdbx_synonyms' 23 5 'Structure model' '_database_2.pdbx_DOI' 24 5 'Structure model' '_database_2.pdbx_database_accession' 25 5 'Structure model' '_entity_name_com.name' 26 5 'Structure model' '_entity_src_gen.pdbx_beg_seq_num' 27 5 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 28 5 'Structure model' '_entity_src_gen.pdbx_gene_src_gene' 29 5 'Structure model' '_entity_src_gen.pdbx_seq_type' 30 5 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 31 5 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 32 5 'Structure model' '_struct_ref_seq_dif.align_id' 33 5 'Structure model' '_struct_ref_seq_dif.details' 34 6 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 35 6 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 36 6 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 37 6 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 38 6 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 39 6 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 40 6 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 41 6 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -28.2235 18.3287 -2.6364 0.2446 0.3252 0.2801 -0.0348 -0.0761 0.0077 2.5445 2.0750 0.7547 1.6166 -0.9621 -0.2491 -0.1307 0.2066 -0.0437 0.1639 0.3137 0.1369 -0.4053 -0.1953 -0.3866 'X-RAY DIFFRACTION' 2 ? refined -26.4682 30.8614 23.0860 0.2097 0.2629 0.2604 -0.0720 0.0443 -0.0670 1.0588 2.2181 0.6133 1.3970 0.0836 -0.0397 0.3234 -0.3371 0.0025 0.1193 0.3005 0.1529 0.5483 0.2519 -0.1134 'X-RAY DIFFRACTION' 3 ? refined -10.9905 24.6195 -8.9458 0.3440 0.1088 0.2934 0.0630 0.0031 0.0108 2.4602 -1.9579 2.2544 1.9997 0.1434 0.4425 0.0337 -0.0197 -0.0149 0.1807 -0.0656 -0.2658 -0.0794 0.4285 0.0835 'X-RAY DIFFRACTION' 4 ? refined -26.0306 47.4004 -9.2038 0.4013 0.2936 0.6233 0.2205 -0.2164 -0.0430 3.0902 5.9771 0.3359 -5.0061 1.7787 -1.0255 -0.6949 0.1408 0.5790 -0.6203 0.6559 -0.1602 0.0853 -0.6814 -0.5103 'X-RAY DIFFRACTION' 5 ? refined -31.2925 10.3237 2.0042 0.3761 0.4296 0.3401 -0.1177 -0.0333 -0.0025 1.2051 0.5963 1.9948 0.8030 1.3855 1.5480 -0.2487 -0.4582 0.6111 -0.1166 0.2539 0.1018 0.1447 0.9980 -1.2237 'X-RAY DIFFRACTION' 6 ? refined -21.3315 20.6247 -9.0467 0.3262 0.2141 0.2425 -0.0838 0.1093 0.0097 2.0260 5.0761 1.2189 0.1451 -0.5141 1.3462 -0.0363 0.1525 -0.1292 0.5125 0.2831 -0.6404 0.2633 0.1609 -0.1359 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 516 A 558 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 559 A 606 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 516 B 558 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 559 B 602 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 E 960 E 974 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 956 F 978 ? ? ? ? ? ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 5 PHASER . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 638 ? ? O E HOH 105 ? ? 2.10 2 1 NE2 A HIS 581 ? B O A HOH 646 ? ? 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O F TYR 978 ? ? 1_555 O A HOH 627 ? ? 4_455 2.06 2 1 CE1 B HIS 598 ? ? 1_555 CE1 B HIS 598 ? ? 4_465 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 528 ? ? 83.34 -6.83 2 1 HIS A 581 ? A 43.57 -136.78 3 1 GLU E 969 ? ? 176.94 165.62 4 1 HYP E 973 ? ? -73.26 -70.39 5 1 VAL B 520 ? B -111.91 -84.60 6 1 ASP B 521 ? A 57.36 -106.42 7 1 ASP B 521 ? B -101.80 60.97 8 1 GLN B 528 ? ? 81.82 -2.81 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CG ? E HYP 964 ? 'WRONG HAND' . 2 1 CG ? E HYP 973 ? 'WRONG HAND' . 3 1 CG ? F HYP 976 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 607 ? A SER 92 2 1 Y 1 A SER 608 ? A SER 93 3 1 Y 1 E GLY 956 ? B GLY 1 4 1 Y 1 E GLN 957 ? B GLN 2 5 1 Y 1 E ARG 958 ? B ARG 3 6 1 Y 1 E GLY 959 ? B GLY 4 7 1 Y 1 E LEU 975 ? B LEU 20 8 1 Y 1 E HYP 976 ? B HYP 21 9 1 Y 1 E GLY 977 ? B GLY 22 10 1 Y 1 E TYR 978 ? B TYR 23 11 1 Y 1 B GLN 603 ? C GLN 88 12 1 Y 1 B THR 604 ? C THR 89 13 1 Y 1 B TYR 605 ? C TYR 90 14 1 Y 1 B PRO 606 ? C PRO 91 15 1 Y 1 B SER 607 ? C SER 92 16 1 Y 1 B SER 608 ? C SER 93 17 1 Y 1 F GLY 959 ? D GLY 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 ASP N N N N 45 ASP CA C N S 46 ASP C C N N 47 ASP O O N N 48 ASP CB C N N 49 ASP CG C N N 50 ASP OD1 O N N 51 ASP OD2 O N N 52 ASP OXT O N N 53 ASP H H N N 54 ASP H2 H N N 55 ASP HA H N N 56 ASP HB2 H N N 57 ASP HB3 H N N 58 ASP HD2 H N N 59 ASP HXT H N N 60 CYS N N N N 61 CYS CA C N R 62 CYS C C N N 63 CYS O O N N 64 CYS CB C N N 65 CYS SG S N N 66 CYS OXT O N N 67 CYS H H N N 68 CYS H2 H N N 69 CYS HA H N N 70 CYS HB2 H N N 71 CYS HB3 H N N 72 CYS HG H N N 73 CYS HXT H N N 74 GLN N N N N 75 GLN CA C N S 76 GLN C C N N 77 GLN O O N N 78 GLN CB C N N 79 GLN CG C N N 80 GLN CD C N N 81 GLN OE1 O N N 82 GLN NE2 N N N 83 GLN OXT O N N 84 GLN H H N N 85 GLN H2 H N N 86 GLN HA H N N 87 GLN HB2 H N N 88 GLN HB3 H N N 89 GLN HG2 H N N 90 GLN HG3 H N N 91 GLN HE21 H N N 92 GLN HE22 H N N 93 GLN HXT H N N 94 GLU N N N N 95 GLU CA C N S 96 GLU C C N N 97 GLU O O N N 98 GLU CB C N N 99 GLU CG C N N 100 GLU CD C N N 101 GLU OE1 O N N 102 GLU OE2 O N N 103 GLU OXT O N N 104 GLU H H N N 105 GLU H2 H N N 106 GLU HA H N N 107 GLU HB2 H N N 108 GLU HB3 H N N 109 GLU HG2 H N N 110 GLU HG3 H N N 111 GLU HE2 H N N 112 GLU HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 GOL C1 C N N 124 GOL O1 O N N 125 GOL C2 C N N 126 GOL O2 O N N 127 GOL C3 C N N 128 GOL O3 O N N 129 GOL H11 H N N 130 GOL H12 H N N 131 GOL HO1 H N N 132 GOL H2 H N N 133 GOL HO2 H N N 134 GOL H31 H N N 135 GOL H32 H N N 136 GOL HO3 H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 HYP N N N N 162 HYP CA C N S 163 HYP C C N N 164 HYP O O N N 165 HYP CB C N N 166 HYP CG C N R 167 HYP CD C N N 168 HYP OD1 O N N 169 HYP OXT O N N 170 HYP H H N N 171 HYP HA H N N 172 HYP HB2 H N N 173 HYP HB3 H N N 174 HYP HG H N N 175 HYP HD22 H N N 176 HYP HD23 H N N 177 HYP HD1 H N N 178 HYP HXT H N N 179 ILE N N N N 180 ILE CA C N S 181 ILE C C N N 182 ILE O O N N 183 ILE CB C N S 184 ILE CG1 C N N 185 ILE CG2 C N N 186 ILE CD1 C N N 187 ILE OXT O N N 188 ILE H H N N 189 ILE H2 H N N 190 ILE HA H N N 191 ILE HB H N N 192 ILE HG12 H N N 193 ILE HG13 H N N 194 ILE HG21 H N N 195 ILE HG22 H N N 196 ILE HG23 H N N 197 ILE HD11 H N N 198 ILE HD12 H N N 199 ILE HD13 H N N 200 ILE HXT H N N 201 LEU N N N N 202 LEU CA C N S 203 LEU C C N N 204 LEU O O N N 205 LEU CB C N N 206 LEU CG C N N 207 LEU CD1 C N N 208 LEU CD2 C N N 209 LEU OXT O N N 210 LEU H H N N 211 LEU H2 H N N 212 LEU HA H N N 213 LEU HB2 H N N 214 LEU HB3 H N N 215 LEU HG H N N 216 LEU HD11 H N N 217 LEU HD12 H N N 218 LEU HD13 H N N 219 LEU HD21 H N N 220 LEU HD22 H N N 221 LEU HD23 H N N 222 LEU HXT H N N 223 LYS N N N N 224 LYS CA C N S 225 LYS C C N N 226 LYS O O N N 227 LYS CB C N N 228 LYS CG C N N 229 LYS CD C N N 230 LYS CE C N N 231 LYS NZ N N N 232 LYS OXT O N N 233 LYS H H N N 234 LYS H2 H N N 235 LYS HA H N N 236 LYS HB2 H N N 237 LYS HB3 H N N 238 LYS HG2 H N N 239 LYS HG3 H N N 240 LYS HD2 H N N 241 LYS HD3 H N N 242 LYS HE2 H N N 243 LYS HE3 H N N 244 LYS HZ1 H N N 245 LYS HZ2 H N N 246 LYS HZ3 H N N 247 LYS HXT H N N 248 MET N N N N 249 MET CA C N S 250 MET C C N N 251 MET O O N N 252 MET CB C N N 253 MET CG C N N 254 MET SD S N N 255 MET CE C N N 256 MET OXT O N N 257 MET H H N N 258 MET H2 H N N 259 MET HA H N N 260 MET HB2 H N N 261 MET HB3 H N N 262 MET HG2 H N N 263 MET HG3 H N N 264 MET HE1 H N N 265 MET HE2 H N N 266 MET HE3 H N N 267 MET HXT H N N 268 NAG C1 C N R 269 NAG C2 C N R 270 NAG C3 C N R 271 NAG C4 C N S 272 NAG C5 C N R 273 NAG C6 C N N 274 NAG C7 C N N 275 NAG C8 C N N 276 NAG N2 N N N 277 NAG O1 O N N 278 NAG O3 O N N 279 NAG O4 O N N 280 NAG O5 O N N 281 NAG O6 O N N 282 NAG O7 O N N 283 NAG H1 H N N 284 NAG H2 H N N 285 NAG H3 H N N 286 NAG H4 H N N 287 NAG H5 H N N 288 NAG H61 H N N 289 NAG H62 H N N 290 NAG H81 H N N 291 NAG H82 H N N 292 NAG H83 H N N 293 NAG HN2 H N N 294 NAG HO1 H N N 295 NAG HO3 H N N 296 NAG HO4 H N N 297 NAG HO6 H N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TRP N N N N 370 TRP CA C N S 371 TRP C C N N 372 TRP O O N N 373 TRP CB C N N 374 TRP CG C Y N 375 TRP CD1 C Y N 376 TRP CD2 C Y N 377 TRP NE1 N Y N 378 TRP CE2 C Y N 379 TRP CE3 C Y N 380 TRP CZ2 C Y N 381 TRP CZ3 C Y N 382 TRP CH2 C Y N 383 TRP OXT O N N 384 TRP H H N N 385 TRP H2 H N N 386 TRP HA H N N 387 TRP HB2 H N N 388 TRP HB3 H N N 389 TRP HD1 H N N 390 TRP HE1 H N N 391 TRP HE3 H N N 392 TRP HZ2 H N N 393 TRP HZ3 H N N 394 TRP HH2 H N N 395 TRP HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 ASP N CA sing N N 43 ASP N H sing N N 44 ASP N H2 sing N N 45 ASP CA C sing N N 46 ASP CA CB sing N N 47 ASP CA HA sing N N 48 ASP C O doub N N 49 ASP C OXT sing N N 50 ASP CB CG sing N N 51 ASP CB HB2 sing N N 52 ASP CB HB3 sing N N 53 ASP CG OD1 doub N N 54 ASP CG OD2 sing N N 55 ASP OD2 HD2 sing N N 56 ASP OXT HXT sing N N 57 CYS N CA sing N N 58 CYS N H sing N N 59 CYS N H2 sing N N 60 CYS CA C sing N N 61 CYS CA CB sing N N 62 CYS CA HA sing N N 63 CYS C O doub N N 64 CYS C OXT sing N N 65 CYS CB SG sing N N 66 CYS CB HB2 sing N N 67 CYS CB HB3 sing N N 68 CYS SG HG sing N N 69 CYS OXT HXT sing N N 70 GLN N CA sing N N 71 GLN N H sing N N 72 GLN N H2 sing N N 73 GLN CA C sing N N 74 GLN CA CB sing N N 75 GLN CA HA sing N N 76 GLN C O doub N N 77 GLN C OXT sing N N 78 GLN CB CG sing N N 79 GLN CB HB2 sing N N 80 GLN CB HB3 sing N N 81 GLN CG CD sing N N 82 GLN CG HG2 sing N N 83 GLN CG HG3 sing N N 84 GLN CD OE1 doub N N 85 GLN CD NE2 sing N N 86 GLN NE2 HE21 sing N N 87 GLN NE2 HE22 sing N N 88 GLN OXT HXT sing N N 89 GLU N CA sing N N 90 GLU N H sing N N 91 GLU N H2 sing N N 92 GLU CA C sing N N 93 GLU CA CB sing N N 94 GLU CA HA sing N N 95 GLU C O doub N N 96 GLU C OXT sing N N 97 GLU CB CG sing N N 98 GLU CB HB2 sing N N 99 GLU CB HB3 sing N N 100 GLU CG CD sing N N 101 GLU CG HG2 sing N N 102 GLU CG HG3 sing N N 103 GLU CD OE1 doub N N 104 GLU CD OE2 sing N N 105 GLU OE2 HE2 sing N N 106 GLU OXT HXT sing N N 107 GLY N CA sing N N 108 GLY N H sing N N 109 GLY N H2 sing N N 110 GLY CA C sing N N 111 GLY CA HA2 sing N N 112 GLY CA HA3 sing N N 113 GLY C O doub N N 114 GLY C OXT sing N N 115 GLY OXT HXT sing N N 116 GOL C1 O1 sing N N 117 GOL C1 C2 sing N N 118 GOL C1 H11 sing N N 119 GOL C1 H12 sing N N 120 GOL O1 HO1 sing N N 121 GOL C2 O2 sing N N 122 GOL C2 C3 sing N N 123 GOL C2 H2 sing N N 124 GOL O2 HO2 sing N N 125 GOL C3 O3 sing N N 126 GOL C3 H31 sing N N 127 GOL C3 H32 sing N N 128 GOL O3 HO3 sing N N 129 HIS N CA sing N N 130 HIS N H sing N N 131 HIS N H2 sing N N 132 HIS CA C sing N N 133 HIS CA CB sing N N 134 HIS CA HA sing N N 135 HIS C O doub N N 136 HIS C OXT sing N N 137 HIS CB CG sing N N 138 HIS CB HB2 sing N N 139 HIS CB HB3 sing N N 140 HIS CG ND1 sing Y N 141 HIS CG CD2 doub Y N 142 HIS ND1 CE1 doub Y N 143 HIS ND1 HD1 sing N N 144 HIS CD2 NE2 sing Y N 145 HIS CD2 HD2 sing N N 146 HIS CE1 NE2 sing Y N 147 HIS CE1 HE1 sing N N 148 HIS NE2 HE2 sing N N 149 HIS OXT HXT sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 HYP N CA sing N N 153 HYP N CD sing N N 154 HYP N H sing N N 155 HYP CA C sing N N 156 HYP CA CB sing N N 157 HYP CA HA sing N N 158 HYP C O doub N N 159 HYP C OXT sing N N 160 HYP CB CG sing N N 161 HYP CB HB2 sing N N 162 HYP CB HB3 sing N N 163 HYP CG CD sing N N 164 HYP CG OD1 sing N N 165 HYP CG HG sing N N 166 HYP CD HD22 sing N N 167 HYP CD HD23 sing N N 168 HYP OD1 HD1 sing N N 169 HYP OXT HXT sing N N 170 ILE N CA sing N N 171 ILE N H sing N N 172 ILE N H2 sing N N 173 ILE CA C sing N N 174 ILE CA CB sing N N 175 ILE CA HA sing N N 176 ILE C O doub N N 177 ILE C OXT sing N N 178 ILE CB CG1 sing N N 179 ILE CB CG2 sing N N 180 ILE CB HB sing N N 181 ILE CG1 CD1 sing N N 182 ILE CG1 HG12 sing N N 183 ILE CG1 HG13 sing N N 184 ILE CG2 HG21 sing N N 185 ILE CG2 HG22 sing N N 186 ILE CG2 HG23 sing N N 187 ILE CD1 HD11 sing N N 188 ILE CD1 HD12 sing N N 189 ILE CD1 HD13 sing N N 190 ILE OXT HXT sing N N 191 LEU N CA sing N N 192 LEU N H sing N N 193 LEU N H2 sing N N 194 LEU CA C sing N N 195 LEU CA CB sing N N 196 LEU CA HA sing N N 197 LEU C O doub N N 198 LEU C OXT sing N N 199 LEU CB CG sing N N 200 LEU CB HB2 sing N N 201 LEU CB HB3 sing N N 202 LEU CG CD1 sing N N 203 LEU CG CD2 sing N N 204 LEU CG HG sing N N 205 LEU CD1 HD11 sing N N 206 LEU CD1 HD12 sing N N 207 LEU CD1 HD13 sing N N 208 LEU CD2 HD21 sing N N 209 LEU CD2 HD22 sing N N 210 LEU CD2 HD23 sing N N 211 LEU OXT HXT sing N N 212 LYS N CA sing N N 213 LYS N H sing N N 214 LYS N H2 sing N N 215 LYS CA C sing N N 216 LYS CA CB sing N N 217 LYS CA HA sing N N 218 LYS C O doub N N 219 LYS C OXT sing N N 220 LYS CB CG sing N N 221 LYS CB HB2 sing N N 222 LYS CB HB3 sing N N 223 LYS CG CD sing N N 224 LYS CG HG2 sing N N 225 LYS CG HG3 sing N N 226 LYS CD CE sing N N 227 LYS CD HD2 sing N N 228 LYS CD HD3 sing N N 229 LYS CE NZ sing N N 230 LYS CE HE2 sing N N 231 LYS CE HE3 sing N N 232 LYS NZ HZ1 sing N N 233 LYS NZ HZ2 sing N N 234 LYS NZ HZ3 sing N N 235 LYS OXT HXT sing N N 236 MET N CA sing N N 237 MET N H sing N N 238 MET N H2 sing N N 239 MET CA C sing N N 240 MET CA CB sing N N 241 MET CA HA sing N N 242 MET C O doub N N 243 MET C OXT sing N N 244 MET CB CG sing N N 245 MET CB HB2 sing N N 246 MET CB HB3 sing N N 247 MET CG SD sing N N 248 MET CG HG2 sing N N 249 MET CG HG3 sing N N 250 MET SD CE sing N N 251 MET CE HE1 sing N N 252 MET CE HE2 sing N N 253 MET CE HE3 sing N N 254 MET OXT HXT sing N N 255 NAG C1 C2 sing N N 256 NAG C1 O1 sing N N 257 NAG C1 O5 sing N N 258 NAG C1 H1 sing N N 259 NAG C2 C3 sing N N 260 NAG C2 N2 sing N N 261 NAG C2 H2 sing N N 262 NAG C3 C4 sing N N 263 NAG C3 O3 sing N N 264 NAG C3 H3 sing N N 265 NAG C4 C5 sing N N 266 NAG C4 O4 sing N N 267 NAG C4 H4 sing N N 268 NAG C5 C6 sing N N 269 NAG C5 O5 sing N N 270 NAG C5 H5 sing N N 271 NAG C6 O6 sing N N 272 NAG C6 H61 sing N N 273 NAG C6 H62 sing N N 274 NAG C7 C8 sing N N 275 NAG C7 N2 sing N N 276 NAG C7 O7 doub N N 277 NAG C8 H81 sing N N 278 NAG C8 H82 sing N N 279 NAG C8 H83 sing N N 280 NAG N2 HN2 sing N N 281 NAG O1 HO1 sing N N 282 NAG O3 HO3 sing N N 283 NAG O4 HO4 sing N N 284 NAG O6 HO6 sing N N 285 PHE N CA sing N N 286 PHE N H sing N N 287 PHE N H2 sing N N 288 PHE CA C sing N N 289 PHE CA CB sing N N 290 PHE CA HA sing N N 291 PHE C O doub N N 292 PHE C OXT sing N N 293 PHE CB CG sing N N 294 PHE CB HB2 sing N N 295 PHE CB HB3 sing N N 296 PHE CG CD1 doub Y N 297 PHE CG CD2 sing Y N 298 PHE CD1 CE1 sing Y N 299 PHE CD1 HD1 sing N N 300 PHE CD2 CE2 doub Y N 301 PHE CD2 HD2 sing N N 302 PHE CE1 CZ doub Y N 303 PHE CE1 HE1 sing N N 304 PHE CE2 CZ sing Y N 305 PHE CE2 HE2 sing N N 306 PHE CZ HZ sing N N 307 PHE OXT HXT sing N N 308 PRO N CA sing N N 309 PRO N CD sing N N 310 PRO N H sing N N 311 PRO CA C sing N N 312 PRO CA CB sing N N 313 PRO CA HA sing N N 314 PRO C O doub N N 315 PRO C OXT sing N N 316 PRO CB CG sing N N 317 PRO CB HB2 sing N N 318 PRO CB HB3 sing N N 319 PRO CG CD sing N N 320 PRO CG HG2 sing N N 321 PRO CG HG3 sing N N 322 PRO CD HD2 sing N N 323 PRO CD HD3 sing N N 324 PRO OXT HXT sing N N 325 SER N CA sing N N 326 SER N H sing N N 327 SER N H2 sing N N 328 SER CA C sing N N 329 SER CA CB sing N N 330 SER CA HA sing N N 331 SER C O doub N N 332 SER C OXT sing N N 333 SER CB OG sing N N 334 SER CB HB2 sing N N 335 SER CB HB3 sing N N 336 SER OG HG sing N N 337 SER OXT HXT sing N N 338 THR N CA sing N N 339 THR N H sing N N 340 THR N H2 sing N N 341 THR CA C sing N N 342 THR CA CB sing N N 343 THR CA HA sing N N 344 THR C O doub N N 345 THR C OXT sing N N 346 THR CB OG1 sing N N 347 THR CB CG2 sing N N 348 THR CB HB sing N N 349 THR OG1 HG1 sing N N 350 THR CG2 HG21 sing N N 351 THR CG2 HG22 sing N N 352 THR CG2 HG23 sing N N 353 THR OXT HXT sing N N 354 TRP N CA sing N N 355 TRP N H sing N N 356 TRP N H2 sing N N 357 TRP CA C sing N N 358 TRP CA CB sing N N 359 TRP CA HA sing N N 360 TRP C O doub N N 361 TRP C OXT sing N N 362 TRP CB CG sing N N 363 TRP CB HB2 sing N N 364 TRP CB HB3 sing N N 365 TRP CG CD1 doub Y N 366 TRP CG CD2 sing Y N 367 TRP CD1 NE1 sing Y N 368 TRP CD1 HD1 sing N N 369 TRP CD2 CE2 doub Y N 370 TRP CD2 CE3 sing Y N 371 TRP NE1 CE2 sing Y N 372 TRP NE1 HE1 sing N N 373 TRP CE2 CZ2 sing Y N 374 TRP CE3 CZ3 doub Y N 375 TRP CE3 HE3 sing N N 376 TRP CZ2 CH2 doub Y N 377 TRP CZ2 HZ2 sing N N 378 TRP CZ3 CH2 sing Y N 379 TRP CZ3 HZ3 sing N N 380 TRP CH2 HH2 sing N N 381 TRP OXT HXT sing N N 382 TYR N CA sing N N 383 TYR N H sing N N 384 TYR N H2 sing N N 385 TYR CA C sing N N 386 TYR CA CB sing N N 387 TYR CA HA sing N N 388 TYR C O doub N N 389 TYR C OXT sing N N 390 TYR CB CG sing N N 391 TYR CB HB2 sing N N 392 TYR CB HB3 sing N N 393 TYR CG CD1 doub Y N 394 TYR CG CD2 sing Y N 395 TYR CD1 CE1 sing Y N 396 TYR CD1 HD1 sing N N 397 TYR CD2 CE2 doub Y N 398 TYR CD2 HD2 sing N N 399 TYR CE1 CZ doub Y N 400 TYR CE1 HE1 sing N N 401 TYR CE2 CZ sing Y N 402 TYR CE2 HE2 sing N N 403 TYR CZ OH sing N N 404 TYR OH HH sing N N 405 TYR OXT HXT sing N N 406 VAL N CA sing N N 407 VAL N H sing N N 408 VAL N H2 sing N N 409 VAL CA C sing N N 410 VAL CA CB sing N N 411 VAL CA HA sing N N 412 VAL C O doub N N 413 VAL C OXT sing N N 414 VAL CB CG1 sing N N 415 VAL CB CG2 sing N N 416 VAL CB HB sing N N 417 VAL CG1 HG11 sing N N 418 VAL CG1 HG12 sing N N 419 VAL CG1 HG13 sing N N 420 VAL CG2 HG21 sing N N 421 VAL CG2 HG22 sing N N 422 VAL CG2 HG23 sing N N 423 VAL OXT HXT sing N N 424 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 GLYCEROL GOL 5 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 2CG6 'PDB ENTRIES 2CG6, 2CG7' 2 ? 'experimental model' PDB 2CG7 'PDB ENTRIES 2CG6, 2CG7' #