data_3ERV # _entry.id 3ERV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ERV pdb_00003erv 10.2210/pdb3erv/pdb RCSB RCSB049689 ? ? WWPDB D_1000049689 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2018-11-14 5 'Structure model' 1 4 2021-02-10 6 'Structure model' 1 5 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Structure summary' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' audit_author 4 5 'Structure model' citation_author 5 5 'Structure model' struct_site 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 5 'Structure model' '_audit_author.identifier_ORCID' 3 5 'Structure model' '_citation_author.identifier_ORCID' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 6 'Structure model' '_database_2.pdbx_DOI' 8 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3ERV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-10-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-10405k _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bonanno, J.B.' 1 ? 'Rutter, M.' 2 ? 'Bain, K.T.' 3 ? 'Iizuka, M.' 4 ? 'Ozyurt, S.' 5 ? 'Wasserman, S.' 6 ? 'Sauder, J.M.' 7 0000-0002-0254-4955 'Burley, S.K.' 8 0000-0002-2487-9713 'Almo, S.C.' 9 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 10 ? # _citation.id primary _citation.title 'Crystal structure of an putative C39-like peptidase from Bacillus anthracis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bonanno, J.B.' 1 ? primary 'Rutter, M.' 2 ? primary 'Bain, K.T.' 3 ? primary 'Iizuka, M.' 4 ? primary 'Ozyurt, S.' 5 ? primary 'Wasserman, S.' 6 ? primary 'Sauder, J.M.' 7 ? primary 'Burley, S.K.' 8 0000-0002-2487-9713 primary 'Almo, S.C.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative C39-like peptidase' 26803.355 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 water nat water 18.015 94 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLNGITKYVEKLTFFNIQSGKQVEFNRDEKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDF MNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDE FTTWETNNGDVSITYNEHCVVLIGYDQESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYVKRSKEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLNGITKYVEKLTFFNIQSGKQVEFNRDEKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDF MNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDE FTTWETNNGDVSITYNEHCVVLIGYDQESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYVKRSKEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-10405k # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 ASN n 1 5 GLY n 1 6 ILE n 1 7 THR n 1 8 LYS n 1 9 TYR n 1 10 VAL n 1 11 GLU n 1 12 LYS n 1 13 LEU n 1 14 THR n 1 15 PHE n 1 16 PHE n 1 17 ASN n 1 18 ILE n 1 19 GLN n 1 20 SER n 1 21 GLY n 1 22 LYS n 1 23 GLN n 1 24 VAL n 1 25 GLU n 1 26 PHE n 1 27 ASN n 1 28 ARG n 1 29 ASP n 1 30 GLU n 1 31 LYS n 1 32 VAL n 1 33 ILE n 1 34 LEU n 1 35 SER n 1 36 ASN n 1 37 VAL n 1 38 PRO n 1 39 PHE n 1 40 ILE n 1 41 GLN n 1 42 GLN n 1 43 LEU n 1 44 PRO n 1 45 GLU n 1 46 LEU n 1 47 ASP n 1 48 ARG n 1 49 GLY n 1 50 CYS n 1 51 GLU n 1 52 VAL n 1 53 THR n 1 54 SER n 1 55 LEU n 1 56 ALA n 1 57 MET n 1 58 MET n 1 59 LEU n 1 60 GLN n 1 61 TYR n 1 62 ALA n 1 63 GLY n 1 64 ILE n 1 65 THR n 1 66 VAL n 1 67 ASP n 1 68 LYS n 1 69 MET n 1 70 LYS n 1 71 LEU n 1 72 ALA n 1 73 ASN n 1 74 GLU n 1 75 ILE n 1 76 LYS n 1 77 LYS n 1 78 VAL n 1 79 ASP n 1 80 PHE n 1 81 MET n 1 82 ASN n 1 83 ASP n 1 84 GLY n 1 85 VAL n 1 86 ARG n 1 87 GLY n 1 88 ASN n 1 89 PRO n 1 90 ASN n 1 91 GLU n 1 92 GLY n 1 93 PHE n 1 94 VAL n 1 95 GLY n 1 96 ASN n 1 97 ILE n 1 98 TYR n 1 99 THR n 1 100 PHE n 1 101 SER n 1 102 GLU n 1 103 SER n 1 104 GLY n 1 105 TYR n 1 106 GLY n 1 107 VAL n 1 108 TYR n 1 109 HIS n 1 110 GLY n 1 111 PRO n 1 112 LEU n 1 113 PHE n 1 114 GLN n 1 115 LEU n 1 116 ALA n 1 117 LYS n 1 118 LYS n 1 119 TYR n 1 120 LEU n 1 121 PRO n 1 122 ASN n 1 123 LYS n 1 124 ALA n 1 125 VAL n 1 126 ASP n 1 127 LEU n 1 128 THR n 1 129 GLY n 1 130 LYS n 1 131 SER n 1 132 ILE n 1 133 GLU n 1 134 GLU n 1 135 LEU n 1 136 TYR n 1 137 LYS n 1 138 SER n 1 139 VAL n 1 140 LYS n 1 141 ALA n 1 142 GLY n 1 143 GLN n 1 144 PRO n 1 145 VAL n 1 146 VAL n 1 147 ILE n 1 148 ILE n 1 149 THR n 1 150 ASN n 1 151 ALA n 1 152 THR n 1 153 PHE n 1 154 ALA n 1 155 PRO n 1 156 LEU n 1 157 ASP n 1 158 GLU n 1 159 ASP n 1 160 GLU n 1 161 PHE n 1 162 THR n 1 163 THR n 1 164 TRP n 1 165 GLU n 1 166 THR n 1 167 ASN n 1 168 ASN n 1 169 GLY n 1 170 ASP n 1 171 VAL n 1 172 SER n 1 173 ILE n 1 174 THR n 1 175 TYR n 1 176 ASN n 1 177 GLU n 1 178 HIS n 1 179 CYS n 1 180 VAL n 1 181 VAL n 1 182 LEU n 1 183 ILE n 1 184 GLY n 1 185 TYR n 1 186 ASP n 1 187 GLN n 1 188 GLU n 1 189 SER n 1 190 VAL n 1 191 TYR n 1 192 ILE n 1 193 ARG n 1 194 ASP n 1 195 PRO n 1 196 LEU n 1 197 LYS n 1 198 ASP n 1 199 SER n 1 200 LEU n 1 201 ASP n 1 202 VAL n 1 203 LYS n 1 204 VAL n 1 205 PRO n 1 206 ARG n 1 207 GLU n 1 208 LYS n 1 209 PHE n 1 210 GLU n 1 211 GLN n 1 212 ALA n 1 213 TRP n 1 214 VAL n 1 215 GLN n 1 216 MET n 1 217 GLY n 1 218 SER n 1 219 GLN n 1 220 ALA n 1 221 ILE n 1 222 SER n 1 223 TYR n 1 224 VAL n 1 225 LYS n 1 226 ARG n 1 227 SER n 1 228 LYS n 1 229 GLU n 1 230 GLY n 1 231 HIS n 1 232 HIS n 1 233 HIS n 1 234 HIS n 1 235 HIS n 1 236 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'anthrax,anthrax bacterium' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BA_0574, GBAA0574' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus anthracis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1392 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pET26' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 23 ? ? ? A . n A 1 2 SER 2 24 ? ? ? A . n A 1 3 LEU 3 25 ? ? ? A . n A 1 4 ASN 4 26 ? ? ? A . n A 1 5 GLY 5 27 ? ? ? A . n A 1 6 ILE 6 28 ? ? ? A . n A 1 7 THR 7 29 ? ? ? A . n A 1 8 LYS 8 30 ? ? ? A . n A 1 9 TYR 9 31 ? ? ? A . n A 1 10 VAL 10 32 ? ? ? A . n A 1 11 GLU 11 33 ? ? ? A . n A 1 12 LYS 12 34 ? ? ? A . n A 1 13 LEU 13 35 ? ? ? A . n A 1 14 THR 14 36 ? ? ? A . n A 1 15 PHE 15 37 ? ? ? A . n A 1 16 PHE 16 38 ? ? ? A . n A 1 17 ASN 17 39 ? ? ? A . n A 1 18 ILE 18 40 ? ? ? A . n A 1 19 GLN 19 41 ? ? ? A . n A 1 20 SER 20 42 ? ? ? A . n A 1 21 GLY 21 43 ? ? ? A . n A 1 22 LYS 22 44 ? ? ? A . n A 1 23 GLN 23 45 ? ? ? A . n A 1 24 VAL 24 46 ? ? ? A . n A 1 25 GLU 25 47 ? ? ? A . n A 1 26 PHE 26 48 ? ? ? A . n A 1 27 ASN 27 49 ? ? ? A . n A 1 28 ARG 28 50 ? ? ? A . n A 1 29 ASP 29 51 51 ASP ASP A . n A 1 30 GLU 30 52 52 GLU GLU A . n A 1 31 LYS 31 53 53 LYS LYS A . n A 1 32 VAL 32 54 54 VAL VAL A . n A 1 33 ILE 33 55 55 ILE ILE A . n A 1 34 LEU 34 56 56 LEU LEU A . n A 1 35 SER 35 57 57 SER SER A . n A 1 36 ASN 36 58 58 ASN ASN A . n A 1 37 VAL 37 59 59 VAL VAL A . n A 1 38 PRO 38 60 60 PRO PRO A . n A 1 39 PHE 39 61 61 PHE PHE A . n A 1 40 ILE 40 62 62 ILE ILE A . n A 1 41 GLN 41 63 63 GLN GLN A . n A 1 42 GLN 42 64 64 GLN GLN A . n A 1 43 LEU 43 65 65 LEU LEU A . n A 1 44 PRO 44 66 66 PRO PRO A . n A 1 45 GLU 45 67 67 GLU GLU A . n A 1 46 LEU 46 68 68 LEU LEU A . n A 1 47 ASP 47 69 69 ASP ASP A . n A 1 48 ARG 48 70 70 ARG ARG A . n A 1 49 GLY 49 71 71 GLY GLY A . n A 1 50 CYS 50 72 72 CYS CYS A . n A 1 51 GLU 51 73 73 GLU GLU A . n A 1 52 VAL 52 74 74 VAL VAL A . n A 1 53 THR 53 75 75 THR THR A . n A 1 54 SER 54 76 76 SER SER A . n A 1 55 LEU 55 77 77 LEU LEU A . n A 1 56 ALA 56 78 78 ALA ALA A . n A 1 57 MET 57 79 79 MET MET A . n A 1 58 MET 58 80 80 MET MET A . n A 1 59 LEU 59 81 81 LEU LEU A . n A 1 60 GLN 60 82 82 GLN GLN A . n A 1 61 TYR 61 83 83 TYR TYR A . n A 1 62 ALA 62 84 84 ALA ALA A . n A 1 63 GLY 63 85 85 GLY GLY A . n A 1 64 ILE 64 86 86 ILE ILE A . n A 1 65 THR 65 87 87 THR THR A . n A 1 66 VAL 66 88 88 VAL VAL A . n A 1 67 ASP 67 89 89 ASP ASP A . n A 1 68 LYS 68 90 90 LYS LYS A . n A 1 69 MET 69 91 91 MET MET A . n A 1 70 LYS 70 92 92 LYS LYS A . n A 1 71 LEU 71 93 93 LEU LEU A . n A 1 72 ALA 72 94 94 ALA ALA A . n A 1 73 ASN 73 95 95 ASN ASN A . n A 1 74 GLU 74 96 96 GLU GLU A . n A 1 75 ILE 75 97 97 ILE ILE A . n A 1 76 LYS 76 98 98 LYS LYS A . n A 1 77 LYS 77 99 99 LYS LYS A . n A 1 78 VAL 78 100 100 VAL VAL A . n A 1 79 ASP 79 101 101 ASP ASP A . n A 1 80 PHE 80 102 102 PHE PHE A . n A 1 81 MET 81 103 103 MET MET A . n A 1 82 ASN 82 104 104 ASN ASN A . n A 1 83 ASP 83 105 105 ASP ASP A . n A 1 84 GLY 84 106 106 GLY GLY A . n A 1 85 VAL 85 107 107 VAL VAL A . n A 1 86 ARG 86 108 108 ARG ARG A . n A 1 87 GLY 87 109 109 GLY GLY A . n A 1 88 ASN 88 110 110 ASN ASN A . n A 1 89 PRO 89 111 111 PRO PRO A . n A 1 90 ASN 90 112 112 ASN ASN A . n A 1 91 GLU 91 113 113 GLU GLU A . n A 1 92 GLY 92 114 114 GLY GLY A . n A 1 93 PHE 93 115 115 PHE PHE A . n A 1 94 VAL 94 116 116 VAL VAL A . n A 1 95 GLY 95 117 117 GLY GLY A . n A 1 96 ASN 96 118 118 ASN ASN A . n A 1 97 ILE 97 119 119 ILE ILE A . n A 1 98 TYR 98 120 120 TYR TYR A . n A 1 99 THR 99 121 121 THR THR A . n A 1 100 PHE 100 122 122 PHE PHE A . n A 1 101 SER 101 123 123 SER SER A . n A 1 102 GLU 102 124 124 GLU GLU A . n A 1 103 SER 103 125 125 SER SER A . n A 1 104 GLY 104 126 126 GLY GLY A . n A 1 105 TYR 105 127 127 TYR TYR A . n A 1 106 GLY 106 128 128 GLY GLY A . n A 1 107 VAL 107 129 129 VAL VAL A . n A 1 108 TYR 108 130 130 TYR TYR A . n A 1 109 HIS 109 131 131 HIS HIS A . n A 1 110 GLY 110 132 132 GLY GLY A . n A 1 111 PRO 111 133 133 PRO PRO A . n A 1 112 LEU 112 134 134 LEU LEU A . n A 1 113 PHE 113 135 135 PHE PHE A . n A 1 114 GLN 114 136 136 GLN GLN A . n A 1 115 LEU 115 137 137 LEU LEU A . n A 1 116 ALA 116 138 138 ALA ALA A . n A 1 117 LYS 117 139 139 LYS LYS A . n A 1 118 LYS 118 140 140 LYS LYS A . n A 1 119 TYR 119 141 141 TYR TYR A . n A 1 120 LEU 120 142 142 LEU LEU A . n A 1 121 PRO 121 143 143 PRO PRO A . n A 1 122 ASN 122 144 144 ASN ASN A . n A 1 123 LYS 123 145 145 LYS LYS A . n A 1 124 ALA 124 146 146 ALA ALA A . n A 1 125 VAL 125 147 147 VAL VAL A . n A 1 126 ASP 126 148 148 ASP ASP A . n A 1 127 LEU 127 149 149 LEU LEU A . n A 1 128 THR 128 150 150 THR THR A . n A 1 129 GLY 129 151 151 GLY GLY A . n A 1 130 LYS 130 152 152 LYS LYS A . n A 1 131 SER 131 153 153 SER SER A . n A 1 132 ILE 132 154 154 ILE ILE A . n A 1 133 GLU 133 155 155 GLU GLU A . n A 1 134 GLU 134 156 156 GLU GLU A . n A 1 135 LEU 135 157 157 LEU LEU A . n A 1 136 TYR 136 158 158 TYR TYR A . n A 1 137 LYS 137 159 159 LYS LYS A . n A 1 138 SER 138 160 160 SER SER A . n A 1 139 VAL 139 161 161 VAL VAL A . n A 1 140 LYS 140 162 162 LYS LYS A . n A 1 141 ALA 141 163 163 ALA ALA A . n A 1 142 GLY 142 164 164 GLY GLY A . n A 1 143 GLN 143 165 165 GLN GLN A . n A 1 144 PRO 144 166 166 PRO PRO A . n A 1 145 VAL 145 167 167 VAL VAL A . n A 1 146 VAL 146 168 168 VAL VAL A . n A 1 147 ILE 147 169 169 ILE ILE A . n A 1 148 ILE 148 170 170 ILE ILE A . n A 1 149 THR 149 171 171 THR THR A . n A 1 150 ASN 150 172 172 ASN ASN A . n A 1 151 ALA 151 173 173 ALA ALA A . n A 1 152 THR 152 174 174 THR THR A . n A 1 153 PHE 153 175 175 PHE PHE A . n A 1 154 ALA 154 176 176 ALA ALA A . n A 1 155 PRO 155 177 177 PRO PRO A . n A 1 156 LEU 156 178 178 LEU LEU A . n A 1 157 ASP 157 179 179 ASP ASP A . n A 1 158 GLU 158 180 180 GLU GLU A . n A 1 159 ASP 159 181 181 ASP ASP A . n A 1 160 GLU 160 182 182 GLU GLU A . n A 1 161 PHE 161 183 183 PHE PHE A . n A 1 162 THR 162 184 184 THR THR A . n A 1 163 THR 163 185 185 THR THR A . n A 1 164 TRP 164 186 186 TRP TRP A . n A 1 165 GLU 165 187 187 GLU GLU A . n A 1 166 THR 166 188 188 THR THR A . n A 1 167 ASN 167 189 189 ASN ASN A . n A 1 168 ASN 168 190 190 ASN ASN A . n A 1 169 GLY 169 191 191 GLY GLY A . n A 1 170 ASP 170 192 192 ASP ASP A . n A 1 171 VAL 171 193 193 VAL VAL A . n A 1 172 SER 172 194 194 SER SER A . n A 1 173 ILE 173 195 195 ILE ILE A . n A 1 174 THR 174 196 196 THR THR A . n A 1 175 TYR 175 197 197 TYR TYR A . n A 1 176 ASN 176 198 198 ASN ASN A . n A 1 177 GLU 177 199 199 GLU GLU A . n A 1 178 HIS 178 200 200 HIS HIS A . n A 1 179 CYS 179 201 201 CYS CYS A . n A 1 180 VAL 180 202 202 VAL VAL A . n A 1 181 VAL 181 203 203 VAL VAL A . n A 1 182 LEU 182 204 204 LEU LEU A . n A 1 183 ILE 183 205 205 ILE ILE A . n A 1 184 GLY 184 206 206 GLY GLY A . n A 1 185 TYR 185 207 207 TYR TYR A . n A 1 186 ASP 186 208 208 ASP ASP A . n A 1 187 GLN 187 209 209 GLN GLN A . n A 1 188 GLU 188 210 210 GLU GLU A . n A 1 189 SER 189 211 211 SER SER A . n A 1 190 VAL 190 212 212 VAL VAL A . n A 1 191 TYR 191 213 213 TYR TYR A . n A 1 192 ILE 192 214 214 ILE ILE A . n A 1 193 ARG 193 215 215 ARG ARG A . n A 1 194 ASP 194 216 216 ASP ASP A . n A 1 195 PRO 195 217 217 PRO PRO A . n A 1 196 LEU 196 218 218 LEU LEU A . n A 1 197 LYS 197 219 219 LYS LYS A . n A 1 198 ASP 198 220 220 ASP ASP A . n A 1 199 SER 199 221 221 SER SER A . n A 1 200 LEU 200 222 222 LEU LEU A . n A 1 201 ASP 201 223 223 ASP ASP A . n A 1 202 VAL 202 224 224 VAL VAL A . n A 1 203 LYS 203 225 225 LYS LYS A . n A 1 204 VAL 204 226 226 VAL VAL A . n A 1 205 PRO 205 227 227 PRO PRO A . n A 1 206 ARG 206 228 228 ARG ARG A . n A 1 207 GLU 207 229 229 GLU GLU A . n A 1 208 LYS 208 230 230 LYS LYS A . n A 1 209 PHE 209 231 231 PHE PHE A . n A 1 210 GLU 210 232 232 GLU GLU A . n A 1 211 GLN 211 233 233 GLN GLN A . n A 1 212 ALA 212 234 234 ALA ALA A . n A 1 213 TRP 213 235 235 TRP TRP A . n A 1 214 VAL 214 236 236 VAL VAL A . n A 1 215 GLN 215 237 237 GLN GLN A . n A 1 216 MET 216 238 238 MET MET A . n A 1 217 GLY 217 239 239 GLY GLY A . n A 1 218 SER 218 240 240 SER SER A . n A 1 219 GLN 219 241 241 GLN GLN A . n A 1 220 ALA 220 242 242 ALA ALA A . n A 1 221 ILE 221 243 243 ILE ILE A . n A 1 222 SER 222 244 244 SER SER A . n A 1 223 TYR 223 245 245 TYR TYR A . n A 1 224 VAL 224 246 246 VAL VAL A . n A 1 225 LYS 225 247 247 LYS LYS A . n A 1 226 ARG 226 248 248 ARG ARG A . n A 1 227 SER 227 249 249 SER SER A . n A 1 228 LYS 228 250 250 LYS LYS A . n A 1 229 GLU 229 251 ? ? ? A . n A 1 230 GLY 230 252 ? ? ? A . n A 1 231 HIS 231 253 ? ? ? A . n A 1 232 HIS 232 254 ? ? ? A . n A 1 233 HIS 233 255 ? ? ? A . n A 1 234 HIS 234 256 ? ? ? A . n A 1 235 HIS 235 257 ? ? ? A . n A 1 236 HIS 236 258 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 1 1 EDO EDO A . C 2 EDO 1 3 3 EDO EDO A . D 3 HOH 1 259 1 HOH HOH A . D 3 HOH 2 260 2 HOH HOH A . D 3 HOH 3 261 3 HOH HOH A . D 3 HOH 4 262 4 HOH HOH A . D 3 HOH 5 263 5 HOH HOH A . D 3 HOH 6 264 6 HOH HOH A . D 3 HOH 7 265 7 HOH HOH A . D 3 HOH 8 266 8 HOH HOH A . D 3 HOH 9 267 9 HOH HOH A . D 3 HOH 10 268 10 HOH HOH A . D 3 HOH 11 269 11 HOH HOH A . D 3 HOH 12 270 12 HOH HOH A . D 3 HOH 13 271 13 HOH HOH A . D 3 HOH 14 272 15 HOH HOH A . D 3 HOH 15 273 16 HOH HOH A . D 3 HOH 16 274 17 HOH HOH A . D 3 HOH 17 275 18 HOH HOH A . D 3 HOH 18 276 20 HOH HOH A . D 3 HOH 19 277 22 HOH HOH A . D 3 HOH 20 278 23 HOH HOH A . D 3 HOH 21 279 24 HOH HOH A . D 3 HOH 22 280 25 HOH HOH A . D 3 HOH 23 281 26 HOH HOH A . D 3 HOH 24 282 27 HOH HOH A . D 3 HOH 25 283 28 HOH HOH A . D 3 HOH 26 284 29 HOH HOH A . D 3 HOH 27 285 32 HOH HOH A . D 3 HOH 28 286 33 HOH HOH A . D 3 HOH 29 287 34 HOH HOH A . D 3 HOH 30 288 35 HOH HOH A . D 3 HOH 31 289 36 HOH HOH A . D 3 HOH 32 290 37 HOH HOH A . D 3 HOH 33 291 38 HOH HOH A . D 3 HOH 34 292 39 HOH HOH A . D 3 HOH 35 293 41 HOH HOH A . D 3 HOH 36 294 42 HOH HOH A . D 3 HOH 37 295 44 HOH HOH A . D 3 HOH 38 296 45 HOH HOH A . D 3 HOH 39 297 46 HOH HOH A . D 3 HOH 40 298 48 HOH HOH A . D 3 HOH 41 299 49 HOH HOH A . D 3 HOH 42 300 50 HOH HOH A . D 3 HOH 43 301 51 HOH HOH A . D 3 HOH 44 302 52 HOH HOH A . D 3 HOH 45 303 53 HOH HOH A . D 3 HOH 46 304 54 HOH HOH A . D 3 HOH 47 305 55 HOH HOH A . D 3 HOH 48 306 56 HOH HOH A . D 3 HOH 49 307 57 HOH HOH A . D 3 HOH 50 308 58 HOH HOH A . D 3 HOH 51 309 59 HOH HOH A . D 3 HOH 52 310 61 HOH HOH A . D 3 HOH 53 311 64 HOH HOH A . D 3 HOH 54 312 65 HOH HOH A . D 3 HOH 55 313 67 HOH HOH A . D 3 HOH 56 314 68 HOH HOH A . D 3 HOH 57 315 69 HOH HOH A . D 3 HOH 58 316 70 HOH HOH A . D 3 HOH 59 317 72 HOH HOH A . D 3 HOH 60 318 75 HOH HOH A . D 3 HOH 61 319 77 HOH HOH A . D 3 HOH 62 320 79 HOH HOH A . D 3 HOH 63 321 80 HOH HOH A . D 3 HOH 64 322 84 HOH HOH A . D 3 HOH 65 323 86 HOH HOH A . D 3 HOH 66 324 89 HOH HOH A . D 3 HOH 67 325 95 HOH HOH A . D 3 HOH 68 326 96 HOH HOH A . D 3 HOH 69 327 98 HOH HOH A . D 3 HOH 70 328 100 HOH HOH A . D 3 HOH 71 329 103 HOH HOH A . D 3 HOH 72 330 105 HOH HOH A . D 3 HOH 73 331 109 HOH HOH A . D 3 HOH 74 332 119 HOH HOH A . D 3 HOH 75 333 157 HOH HOH A . D 3 HOH 76 334 158 HOH HOH A . D 3 HOH 77 335 160 HOH HOH A . D 3 HOH 78 336 162 HOH HOH A . D 3 HOH 79 337 166 HOH HOH A . D 3 HOH 80 338 167 HOH HOH A . D 3 HOH 81 339 168 HOH HOH A . D 3 HOH 82 340 169 HOH HOH A . D 3 HOH 83 341 170 HOH HOH A . D 3 HOH 84 342 171 HOH HOH A . D 3 HOH 85 343 172 HOH HOH A . D 3 HOH 86 344 173 HOH HOH A . D 3 HOH 87 345 174 HOH HOH A . D 3 HOH 88 346 175 HOH HOH A . D 3 HOH 89 347 176 HOH HOH A . D 3 HOH 90 348 177 HOH HOH A . D 3 HOH 91 349 178 HOH HOH A . D 3 HOH 92 350 179 HOH HOH A . D 3 HOH 93 351 180 HOH HOH A . D 3 HOH 94 352 181 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 52 ? CG ? A GLU 30 CG 2 1 Y 1 A GLU 52 ? CD ? A GLU 30 CD 3 1 Y 1 A GLU 52 ? OE1 ? A GLU 30 OE1 4 1 Y 1 A GLU 52 ? OE2 ? A GLU 30 OE2 5 1 Y 1 A ASN 189 ? CG ? A ASN 167 CG 6 1 Y 1 A ASN 189 ? OD1 ? A ASN 167 OD1 7 1 Y 1 A ASN 189 ? ND2 ? A ASN 167 ND2 8 1 Y 1 A GLU 210 ? CG ? A GLU 188 CG 9 1 Y 1 A GLU 210 ? CD ? A GLU 188 CD 10 1 Y 1 A GLU 210 ? OE1 ? A GLU 188 OE1 11 1 Y 1 A GLU 210 ? OE2 ? A GLU 188 OE2 12 1 Y 1 A ARG 248 ? CG ? A ARG 226 CG 13 1 Y 1 A ARG 248 ? CD ? A ARG 226 CD 14 1 Y 1 A ARG 248 ? NE ? A ARG 226 NE 15 1 Y 1 A ARG 248 ? CZ ? A ARG 226 CZ 16 1 Y 1 A ARG 248 ? NH1 ? A ARG 226 NH1 17 1 Y 1 A ARG 248 ? NH2 ? A ARG 226 NH2 18 1 Y 1 A SER 249 ? OG ? A SER 227 OG 19 1 Y 1 A LYS 250 ? CG ? A LYS 228 CG 20 1 Y 1 A LYS 250 ? CD ? A LYS 228 CD 21 1 Y 1 A LYS 250 ? CE ? A LYS 228 CE 22 1 Y 1 A LYS 250 ? NZ ? A LYS 228 NZ # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 1 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 SHELXCD . ? ? ? ? phasing ? ? ? 6 SHELXE . ? ? ? ? 'model building' ? ? ? 7 # _cell.length_a 117.167 _cell.length_b 117.167 _cell.length_c 36.575 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3ERV _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 3ERV _symmetry.Int_Tables_number 169 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3ERV _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '10% ethylene glycol, pH 7.0, Vapor diffusion, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-10-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator diamond _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97958 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.97958 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 3ERV _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 33.826 _reflns.number_all 17110 _reflns.number_obs 17110 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_netI_over_sigmaI 16.8 _reflns.pdbx_Rsym_value 0.111 _reflns.pdbx_redundancy 20.300 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.B_iso_Wilson_estimate 37.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.21 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 49803 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.523 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_Rsym_value 0.523 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 20.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2473 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3ERV _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 17073 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_R_work 0.226 _refine.ls_wR_factor_R_work 0.252 _refine.ls_R_factor_R_free 0.272 _refine.ls_wR_factor_R_free 0.298 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 874 _refine.B_iso_mean 53.316 _refine.aniso_B[1][1] 1.020 _refine.aniso_B[2][2] 1.020 _refine.aniso_B[3][3] -1.530 _refine.aniso_B[1][2] 0.510 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.overall_SU_R_Cruickshank_DPI 0.201 _refine.overall_SU_R_free 0.186 _refine.pdbx_overall_ESU_R 0.201 _refine.pdbx_overall_ESU_R_Free 0.186 _refine.overall_SU_ML 0.145 _refine.overall_SU_B 5.627 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.705 _refine.B_iso_max 90.94 _refine.B_iso_min 30.41 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 17073 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1560 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1662 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1598 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2164 1.504 1.967 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 199 6.248 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 71 42.704 25.775 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 273 16.401 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 9.040 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 243 0.103 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1200 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 994 0.942 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1608 1.748 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 604 2.853 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 556 4.571 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1192 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.463 _refine_ls_shell.R_factor_R_free 0.477 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1267 _refine_ls_shell.number_reflns_obs 1192 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3ERV _struct.title 'Crystal structure of an putative C39-like peptidase from Bacillus anthracis' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ERV _struct_keywords.text ;STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q81VC3_BACAN _struct_ref.pdbx_db_accession Q81VC3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NGITKYVEKLTFFNIQSGKQVEFNRDEKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMND GVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTT WETNNGDVSITYNEHCVVLIGYDQESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYVKRSK ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ERV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 228 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q81VC3 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 248 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 250 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ERV MET A 1 ? UNP Q81VC3 ? ? 'expression tag' 23 1 1 3ERV SER A 2 ? UNP Q81VC3 ? ? 'expression tag' 24 2 1 3ERV LEU A 3 ? UNP Q81VC3 ? ? 'expression tag' 25 3 1 3ERV GLU A 229 ? UNP Q81VC3 ? ? 'expression tag' 251 4 1 3ERV GLY A 230 ? UNP Q81VC3 ? ? 'expression tag' 252 5 1 3ERV HIS A 231 ? UNP Q81VC3 ? ? 'expression tag' 253 6 1 3ERV HIS A 232 ? UNP Q81VC3 ? ? 'expression tag' 254 7 1 3ERV HIS A 233 ? UNP Q81VC3 ? ? 'expression tag' 255 8 1 3ERV HIS A 234 ? UNP Q81VC3 ? ? 'expression tag' 256 9 1 3ERV HIS A 235 ? UNP Q81VC3 ? ? 'expression tag' 257 10 1 3ERV HIS A 236 ? UNP Q81VC3 ? ? 'expression tag' 258 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 49 ? ALA A 62 ? GLY A 71 ALA A 84 1 ? 14 HELX_P HELX_P2 2 ASP A 67 ? ILE A 75 ? ASP A 89 ILE A 97 1 ? 9 HELX_P HELX_P3 3 TYR A 108 ? LEU A 120 ? TYR A 130 LEU A 142 1 ? 13 HELX_P HELX_P4 4 SER A 131 ? ALA A 141 ? SER A 153 ALA A 163 1 ? 11 HELX_P HELX_P5 5 ASP A 157 ? PHE A 161 ? ASP A 179 PHE A 183 5 ? 5 HELX_P HELX_P6 6 ARG A 206 ? MET A 216 ? ARG A 228 MET A 238 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 43 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 65 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 44 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 66 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.29 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 2 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 32 ? ILE A 33 ? VAL A 54 ILE A 55 A 2 GLU A 177 ? TYR A 185 ? GLU A 199 TYR A 207 A 3 VAL A 145 ? ASN A 150 ? VAL A 167 ASN A 172 A 4 ALA A 220 ? TYR A 223 ? ALA A 242 TYR A 245 A 5 ALA A 124 ? ASP A 126 ? ALA A 146 ASP A 148 B 1 VAL A 32 ? ILE A 33 ? VAL A 54 ILE A 55 B 2 GLU A 177 ? TYR A 185 ? GLU A 199 TYR A 207 B 3 SER A 189 ? ARG A 193 ? SER A 211 ARG A 215 B 4 LYS A 203 ? PRO A 205 ? LYS A 225 PRO A 227 C 1 LYS A 77 ? VAL A 78 ? LYS A 99 VAL A 100 C 2 PHE A 93 ? VAL A 94 ? PHE A 115 VAL A 116 D 1 MET A 81 ? ASN A 82 ? MET A 103 ASN A 104 D 2 VAL A 85 ? ARG A 86 ? VAL A 107 ARG A 108 E 1 THR A 162 ? THR A 166 ? THR A 184 THR A 188 E 2 GLY A 169 ? ILE A 173 ? GLY A 191 ILE A 195 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 32 ? N VAL A 54 O TYR A 185 ? O TYR A 207 A 2 3 O LEU A 182 ? O LEU A 204 N VAL A 145 ? N VAL A 167 A 3 4 N VAL A 146 ? N VAL A 168 O ILE A 221 ? O ILE A 243 A 4 5 O SER A 222 ? O SER A 244 N VAL A 125 ? N VAL A 147 B 1 2 N VAL A 32 ? N VAL A 54 O TYR A 185 ? O TYR A 207 B 2 3 N ILE A 183 ? N ILE A 205 O TYR A 191 ? O TYR A 213 B 3 4 N VAL A 190 ? N VAL A 212 O VAL A 204 ? O VAL A 226 C 1 2 N VAL A 78 ? N VAL A 100 O PHE A 93 ? O PHE A 115 D 1 2 N ASN A 82 ? N ASN A 104 O VAL A 85 ? O VAL A 107 E 1 2 N THR A 162 ? N THR A 184 O ILE A 173 ? O ILE A 195 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 1 ? 6 'BINDING SITE FOR RESIDUE EDO A 1' AC2 Software A EDO 3 ? 6 'BINDING SITE FOR RESIDUE EDO A 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 63 ? GLY A 85 . ? 2_655 ? 2 AC1 6 LYS A 77 ? LYS A 99 . ? 1_555 ? 3 AC1 6 GLY A 95 ? GLY A 117 . ? 1_555 ? 4 AC1 6 ASN A 96 ? ASN A 118 . ? 1_555 ? 5 AC1 6 ILE A 97 ? ILE A 119 . ? 1_555 ? 6 AC1 6 TYR A 98 ? TYR A 120 . ? 1_555 ? 7 AC2 6 SER A 35 ? SER A 57 . ? 1_555 ? 8 AC2 6 ASN A 36 ? ASN A 58 . ? 1_555 ? 9 AC2 6 VAL A 37 ? VAL A 59 . ? 1_555 ? 10 AC2 6 GLU A 45 ? GLU A 67 . ? 3_664 ? 11 AC2 6 ARG A 193 ? ARG A 215 . ? 1_555 ? 12 AC2 6 HOH D . ? HOH A 261 . ? 3_664 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 127 ? ? -130.49 -80.22 2 1 THR A 171 ? ? -148.81 -155.06 3 1 SER A 244 ? ? -146.25 -156.23 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 23 ? A MET 1 2 1 Y 1 A SER 24 ? A SER 2 3 1 Y 1 A LEU 25 ? A LEU 3 4 1 Y 1 A ASN 26 ? A ASN 4 5 1 Y 1 A GLY 27 ? A GLY 5 6 1 Y 1 A ILE 28 ? A ILE 6 7 1 Y 1 A THR 29 ? A THR 7 8 1 Y 1 A LYS 30 ? A LYS 8 9 1 Y 1 A TYR 31 ? A TYR 9 10 1 Y 1 A VAL 32 ? A VAL 10 11 1 Y 1 A GLU 33 ? A GLU 11 12 1 Y 1 A LYS 34 ? A LYS 12 13 1 Y 1 A LEU 35 ? A LEU 13 14 1 Y 1 A THR 36 ? A THR 14 15 1 Y 1 A PHE 37 ? A PHE 15 16 1 Y 1 A PHE 38 ? A PHE 16 17 1 Y 1 A ASN 39 ? A ASN 17 18 1 Y 1 A ILE 40 ? A ILE 18 19 1 Y 1 A GLN 41 ? A GLN 19 20 1 Y 1 A SER 42 ? A SER 20 21 1 Y 1 A GLY 43 ? A GLY 21 22 1 Y 1 A LYS 44 ? A LYS 22 23 1 Y 1 A GLN 45 ? A GLN 23 24 1 Y 1 A VAL 46 ? A VAL 24 25 1 Y 1 A GLU 47 ? A GLU 25 26 1 Y 1 A PHE 48 ? A PHE 26 27 1 Y 1 A ASN 49 ? A ASN 27 28 1 Y 1 A ARG 50 ? A ARG 28 29 1 Y 1 A GLU 251 ? A GLU 229 30 1 Y 1 A GLY 252 ? A GLY 230 31 1 Y 1 A HIS 253 ? A HIS 231 32 1 Y 1 A HIS 254 ? A HIS 232 33 1 Y 1 A HIS 255 ? A HIS 233 34 1 Y 1 A HIS 256 ? A HIS 234 35 1 Y 1 A HIS 257 ? A HIS 235 36 1 Y 1 A HIS 258 ? A HIS 236 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TRP N CA sing N N 315 TRP N H sing N N 316 TRP N H2 sing N N 317 TRP CA C sing N N 318 TRP CA CB sing N N 319 TRP CA HA sing N N 320 TRP C O doub N N 321 TRP C OXT sing N N 322 TRP CB CG sing N N 323 TRP CB HB2 sing N N 324 TRP CB HB3 sing N N 325 TRP CG CD1 doub Y N 326 TRP CG CD2 sing Y N 327 TRP CD1 NE1 sing Y N 328 TRP CD1 HD1 sing N N 329 TRP CD2 CE2 doub Y N 330 TRP CD2 CE3 sing Y N 331 TRP NE1 CE2 sing Y N 332 TRP NE1 HE1 sing N N 333 TRP CE2 CZ2 sing Y N 334 TRP CE3 CZ3 doub Y N 335 TRP CE3 HE3 sing N N 336 TRP CZ2 CH2 doub Y N 337 TRP CZ2 HZ2 sing N N 338 TRP CZ3 CH2 sing Y N 339 TRP CZ3 HZ3 sing N N 340 TRP CH2 HH2 sing N N 341 TRP OXT HXT sing N N 342 TYR N CA sing N N 343 TYR N H sing N N 344 TYR N H2 sing N N 345 TYR CA C sing N N 346 TYR CA CB sing N N 347 TYR CA HA sing N N 348 TYR C O doub N N 349 TYR C OXT sing N N 350 TYR CB CG sing N N 351 TYR CB HB2 sing N N 352 TYR CB HB3 sing N N 353 TYR CG CD1 doub Y N 354 TYR CG CD2 sing Y N 355 TYR CD1 CE1 sing Y N 356 TYR CD1 HD1 sing N N 357 TYR CD2 CE2 doub Y N 358 TYR CD2 HD2 sing N N 359 TYR CE1 CZ doub Y N 360 TYR CE1 HE1 sing N N 361 TYR CE2 CZ sing Y N 362 TYR CE2 HE2 sing N N 363 TYR CZ OH sing N N 364 TYR OH HH sing N N 365 TYR OXT HXT sing N N 366 VAL N CA sing N N 367 VAL N H sing N N 368 VAL N H2 sing N N 369 VAL CA C sing N N 370 VAL CA CB sing N N 371 VAL CA HA sing N N 372 VAL C O doub N N 373 VAL C OXT sing N N 374 VAL CB CG1 sing N N 375 VAL CB CG2 sing N N 376 VAL CB HB sing N N 377 VAL CG1 HG11 sing N N 378 VAL CG1 HG12 sing N N 379 VAL CG1 HG13 sing N N 380 VAL CG2 HG21 sing N N 381 VAL CG2 HG22 sing N N 382 VAL CG2 HG23 sing N N 383 VAL OXT HXT sing N N 384 # _atom_sites.entry_id 3ERV _atom_sites.fract_transf_matrix[1][1] 0.008535 _atom_sites.fract_transf_matrix[1][2] 0.004928 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009855 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027341 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_