HEADER VIRAL PROTEIN 21-OCT-08 3EYK TITLE STRUCTURE OF INFLUENZA HAEMAGGLUTININ IN COMPLEX WITH AN INHIBITOR OF TITLE 2 MEMBRANE FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 6 ORGANISM_TAXID: 11320 KEYWDS INFLUENZA, HEMAGGLUTININ, INHIBITOR, ENVELOPE PROTEIN, FUSION KEYWDS 2 PROTEIN, GLYCOPROTEIN, LIPOPROTEIN, MEMBRANE, PALMITATE, KEYWDS 3 TRANSMEMBRANE, VIRION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.J.RUSSELL,P.S.KERRY,D.J.STEVENS,D.A.STEINHAUER,S.R.MARTIN, AUTHOR 2 S.J.GAMBLIN,J.J.SKEHEL REVDAT 2 27-DEC-23 3EYK 1 REMARK REVDAT 1 13-JAN-09 3EYK 0 JRNL AUTH R.J.RUSSELL,P.S.KERRY,D.J.STEVENS,D.A.STEINHAUER,S.R.MARTIN, JRNL AUTH 2 S.J.GAMBLIN,J.J.SKEHEL JRNL TITL STRUCTURE OF INFLUENZA HEMAGGLUTININ IN COMPLEX WITH AN JRNL TITL 2 INHIBITOR OF MEMBRANE FUSION JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 17736 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 19004788 JRNL DOI 10.1073/PNAS.0807142105 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 28412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1499 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4000 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5423 ; 1.512 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 6.517 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.853 ;24.555 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 668 ;17.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.083 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3021 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1814 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2698 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2484 ; 0.704 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3915 ; 1.273 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1701 ; 1.748 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1508 ; 2.817 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG8000, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.54900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.54900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.54900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.54900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.54900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.54900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.54900 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.54900 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.54900 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.54900 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.54900 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.54900 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.54900 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.54900 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.54900 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.54900 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.54900 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.54900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 174 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 175 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 223 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 374 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 330 REMARK 465 GLN A 331 REMARK 465 ALA A 332 REMARK 465 LYS A 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 168 O ILE B 171 1.85 REMARK 500 O LYS B 172 O HOH B 270 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 161 N GLY A 161 CA 0.094 REMARK 500 GLY A 161 C ASN A 162 N -0.294 REMARK 500 SER A 263 CB SER A 263 OG 0.348 REMARK 500 LYS B 172 C LYS B 172 OXT 0.513 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 THR A 158 CA - C - N ANGL. DEV. = 20.4 DEGREES REMARK 500 THR A 158 O - C - N ANGL. DEV. = -19.4 DEGREES REMARK 500 ASN A 159 CB - CA - C ANGL. DEV. = 24.8 DEGREES REMARK 500 ASN A 159 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 ASN A 159 CA - C - O ANGL. DEV. = -12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 -115.18 53.34 REMARK 500 ASN A 162 164.54 -40.67 REMARK 500 LYS A 198 -60.46 59.65 REMARK 500 LYS A 268 73.90 -65.68 REMARK 500 GLU B 57 105.70 -41.75 REMARK 500 TYR B 63 -112.26 -109.17 REMARK 500 GLN B 65 -115.25 -127.28 REMARK 500 ARG B 127 -129.58 52.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 158 ASN A 159 -144.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 161 -11.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EYK B 173 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EYJ RELATED DB: PDB REMARK 900 RELATED ID: 3EYM RELATED DB: PDB DBREF 3EYK A 9 333 UNP P26137 HEMA_I82A0 20 342 DBREF 3EYK B 1 172 UNP P26137 HEMA_I82A0 343 514 SEQRES 1 A 323 GLY ASN PRO ILE ILE CYS LEU GLY HIS HIS ALA VAL GLU SEQRES 2 A 323 ASN GLY THR SER VAL LYS THR LEU THR ASP ASN HIS VAL SEQRES 3 A 323 GLU VAL VAL SER ALA LYS GLU LEU VAL GLU THR LYS HIS SEQRES 4 A 323 THR ASP GLU LEU CYS PRO SER PRO LEU LYS LEU VAL ASP SEQRES 5 A 323 GLY GLN ASP CYS ASP LEU ILE ASN GLY ALA LEU GLY SER SEQRES 6 A 323 PRO GLY CYS ASP ARG LEU GLN ASP THR THR TRP ASP VAL SEQRES 7 A 323 PHE ILE GLU ARG PRO THR ALA VAL ASP THR CYS TYR PRO SEQRES 8 A 323 PHE ASP VAL PRO ASP TYR GLN SER LEU ARG SER ILE LEU SEQRES 9 A 323 ALA SER SER GLY SER LEU GLU PHE ILE ALA GLU GLN PHE SEQRES 10 A 323 THR TRP ASN GLY VAL LYS VAL ASP GLY SER SER SER ALA SEQRES 11 A 323 CYS LEU ARG GLY GLY ARG ASN SER PHE PHE SER ARG LEU SEQRES 12 A 323 ASN TRP LEU THR LYS ALA THR ASN GLY ASN TYR GLY PRO SEQRES 13 A 323 ILE ASN VAL THR LYS GLU ASN THR GLY SER TYR VAL ARG SEQRES 14 A 323 LEU TYR LEU TRP GLY VAL HIS HIS PRO SER SER ASP ASN SEQRES 15 A 323 GLU GLN THR ASP LEU TYR LYS VAL ALA THR GLY ARG VAL SEQRES 16 A 323 THR VAL SER THR ARG SER ASP GLN ILE SER ILE VAL PRO SEQRES 17 A 323 ASN ILE GLY SER ARG PRO ARG VAL ARG ASN GLN SER GLY SEQRES 18 A 323 ARG ILE SER ILE TYR TRP THR LEU VAL ASN PRO GLY ASP SEQRES 19 A 323 SER ILE ILE PHE ASN SER ILE GLY ASN LEU ILE ALA PRO SEQRES 20 A 323 ARG GLY HIS TYR LYS ILE SER LYS SER THR LYS SER THR SEQRES 21 A 323 VAL LEU LYS SER ASP LYS ARG ILE GLY SER CYS THR SER SEQRES 22 A 323 PRO CYS LEU THR ASP LYS GLY SER ILE GLN SER ASP LYS SEQRES 23 A 323 PRO PHE GLN ASN VAL SER ARG ILE ALA ILE GLY ASN CYS SEQRES 24 A 323 PRO LYS TYR VAL LYS GLN GLY SER LEU MET LEU ALA THR SEQRES 25 A 323 GLY MET ARG ASN ILE PRO GLY LYS GLN ALA LYS SEQRES 1 B 172 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 172 TRP GLN GLY LEU ILE ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 172 GLN ASN ALA GLU GLY THR GLY THR ALA ALA ASP LEU LYS SEQRES 4 B 172 SER THR GLN ALA ALA ILE ASP GLN ILE ASN GLY LYS LEU SEQRES 5 B 172 ASN ARG LEU ILE GLU LYS THR ASN GLU LYS TYR HIS GLN SEQRES 6 B 172 ILE GLU LYS GLU PHE GLU GLN VAL GLU GLY ARG ILE GLN SEQRES 7 B 172 ASP LEU GLU LYS TYR VAL GLU ASP THR LYS ILE ASP LEU SEQRES 8 B 172 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA LEU GLU ASN SEQRES 9 B 172 GLN HIS THR ILE ASP VAL THR ASP SER GLU MET ASN LYS SEQRES 10 B 172 LEU PHE GLU ARG VAL ARG ARG GLN LEU ARG GLU ASN ALA SEQRES 11 B 172 GLU ASP GLN GLY ASN GLY CYS PHE GLU ILE PHE HIS GLN SEQRES 12 B 172 CYS ASP ASN ASN CYS ILE GLU SER ILE ARG ASN GLY THR SEQRES 13 B 172 TYR ASP HIS ASN ILE TYR ARG ASP GLU ALA ILE ASN ASN SEQRES 14 B 172 ARG ILE LYS HET EYK B 173 12 HETNAM EYK 2-TERT-BUTYLBENZENE-1,4-DIOL FORMUL 3 EYK C10 H14 O2 FORMUL 4 HOH *337(H2 O) HELIX 1 1 ASP A 65 GLY A 72 1 8 HELIX 2 2 SER A 73 GLN A 80 5 8 HELIX 3 3 ASP A 104 GLY A 116 1 13 HELIX 4 4 SER A 189 LYS A 198 1 10 HELIX 5 5 ASP B 37 LEU B 55 1 19 HELIX 6 6 GLY B 75 ARG B 127 1 53 HELIX 7 7 ASP B 145 ASN B 154 1 10 HELIX 8 8 ASP B 158 ILE B 161 5 4 HELIX 9 9 TYR B 162 ILE B 171 1 10 SHEET 1 A 5 GLY B 31 ALA B 36 0 SHEET 2 A 5 TYR B 22 ASN B 28 -1 N ASN B 28 O GLY B 31 SHEET 3 A 5 ILE A 12 HIS A 17 -1 N CYS A 14 O ARG B 25 SHEET 4 A 5 CYS B 137 ILE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 A 5 ALA B 130 ASP B 132 -1 N GLU B 131 O GLU B 139 SHEET 1 B 2 THR A 24 VAL A 26 0 SHEET 2 B 2 VAL A 34 VAL A 36 -1 O VAL A 34 N VAL A 26 SHEET 1 C 2 ALA A 39 GLU A 41 0 SHEET 2 C 2 MET A 319 ALA A 321 -1 O LEU A 320 N LYS A 40 SHEET 1 D 3 VAL A 43 GLU A 44 0 SHEET 2 D 3 PHE A 298 GLN A 299 1 O PHE A 298 N GLU A 44 SHEET 3 D 3 LYS A 311 TYR A 312 1 O LYS A 311 N GLN A 299 SHEET 1 E 3 LEU A 58 ASP A 60 0 SHEET 2 E 3 VAL A 86 GLU A 89 1 O ILE A 88 N VAL A 59 SHEET 3 E 3 THR A 270 LYS A 273 1 O LEU A 272 N PHE A 87 SHEET 1 F 5 PHE A 100 ASP A 101 0 SHEET 2 F 5 ARG A 231 VAL A 239 1 O ILE A 234 N ASP A 101 SHEET 3 F 5 VAL A 177 HIS A 186 -1 N TRP A 182 O TYR A 235 SHEET 4 F 5 GLY A 258 ILE A 262 -1 O TYR A 260 N LEU A 179 SHEET 5 F 5 PHE A 120 ALA A 122 -1 N ILE A 121 O HIS A 259 SHEET 1 G 5 PHE A 100 ASP A 101 0 SHEET 2 G 5 ARG A 231 VAL A 239 1 O ILE A 234 N ASP A 101 SHEET 3 G 5 VAL A 177 HIS A 186 -1 N TRP A 182 O TYR A 235 SHEET 4 G 5 LEU A 253 PRO A 256 -1 O ILE A 254 N GLY A 183 SHEET 5 G 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 255 SHEET 1 H 2 VAL A 130 LYS A 131 0 SHEET 2 H 2 THR A 155 LYS A 156 -1 O THR A 155 N LYS A 131 SHEET 1 I 2 SER A 136 ARG A 141 0 SHEET 2 I 2 ARG A 144 SER A 146 -1 O SER A 146 N CYS A 139 SHEET 1 J 4 ILE A 166 GLU A 171 0 SHEET 2 J 4 SER A 244 GLY A 251 -1 O SER A 249 N ILE A 166 SHEET 3 J 4 ARG A 203 SER A 207 -1 N THR A 205 O ASN A 248 SHEET 4 J 4 GLN A 212 ILE A 215 -1 O ILE A 215 N VAL A 204 SHEET 1 K 4 GLY A 290 SER A 291 0 SHEET 2 K 4 CYS A 285 THR A 287 -1 N THR A 287 O GLY A 290 SHEET 3 K 4 ALA A 305 ASN A 308 -1 O ILE A 306 N LEU A 286 SHEET 4 K 4 GLU B 61 LYS B 62 -1 O LYS B 62 N GLY A 307 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.04 SSBOND 2 CYS A 52 CYS A 281 1555 1555 2.09 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.03 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.06 SSBOND 5 CYS A 285 CYS A 309 1555 1555 2.04 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.07 CISPEP 1 SER A 54 PRO A 55 0 8.32 SITE 1 AC1 7 ARG B 54 GLU B 57 TYR B 94 GLU B 97 SITE 2 AC1 7 LEU B 98 LEU B 99 HOH B 313 CRYST1 139.098 139.098 139.098 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007189 0.00000