data_3F43 # _entry.id 3F43 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F43 pdb_00003f43 10.2210/pdb3f43/pdb RCSB RCSB050121 ? ? WWPDB D_1000050121 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 282948 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3F43 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-10-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative anti-sigma factor antagonist TM1081 (TM1081) from THERMOTOGA MARITIMA at 1.59 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3F43 _cell.length_a 49.700 _cell.length_b 49.700 _cell.length_c 113.620 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F43 _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative anti-sigma factor antagonist TM1081' 14637.297 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 121 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)FPYKIVDDVVIL(MSE)PNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSF SLGVIVNILKSISSSGGFFALVSPNEKVERVLSLTNLDRIVKIYDTISEA(MSE)EEVRRK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMFPYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSI SSSGGFFALVSPNEKVERVLSLTNLDRIVKIYDTISEAMEEVRRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 282948 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 PHE n 1 15 PRO n 1 16 TYR n 1 17 LYS n 1 18 ILE n 1 19 VAL n 1 20 ASP n 1 21 ASP n 1 22 VAL n 1 23 VAL n 1 24 ILE n 1 25 LEU n 1 26 MSE n 1 27 PRO n 1 28 ASN n 1 29 LYS n 1 30 GLU n 1 31 LEU n 1 32 ASN n 1 33 ILE n 1 34 GLU n 1 35 ASN n 1 36 ALA n 1 37 HIS n 1 38 LEU n 1 39 PHE n 1 40 LYS n 1 41 LYS n 1 42 TRP n 1 43 VAL n 1 44 PHE n 1 45 ASP n 1 46 GLU n 1 47 PHE n 1 48 LEU n 1 49 ASN n 1 50 LYS n 1 51 GLY n 1 52 TYR n 1 53 ASN n 1 54 LYS n 1 55 ILE n 1 56 PHE n 1 57 LEU n 1 58 VAL n 1 59 LEU n 1 60 SER n 1 61 ASP n 1 62 VAL n 1 63 GLU n 1 64 SER n 1 65 ILE n 1 66 ASP n 1 67 SER n 1 68 PHE n 1 69 SER n 1 70 LEU n 1 71 GLY n 1 72 VAL n 1 73 ILE n 1 74 VAL n 1 75 ASN n 1 76 ILE n 1 77 LEU n 1 78 LYS n 1 79 SER n 1 80 ILE n 1 81 SER n 1 82 SER n 1 83 SER n 1 84 GLY n 1 85 GLY n 1 86 PHE n 1 87 PHE n 1 88 ALA n 1 89 LEU n 1 90 VAL n 1 91 SER n 1 92 PRO n 1 93 ASN n 1 94 GLU n 1 95 LYS n 1 96 VAL n 1 97 GLU n 1 98 ARG n 1 99 VAL n 1 100 LEU n 1 101 SER n 1 102 LEU n 1 103 THR n 1 104 ASN n 1 105 LEU n 1 106 ASP n 1 107 ARG n 1 108 ILE n 1 109 VAL n 1 110 LYS n 1 111 ILE n 1 112 TYR n 1 113 ASP n 1 114 THR n 1 115 ILE n 1 116 SER n 1 117 GLU n 1 118 ALA n 1 119 MSE n 1 120 GLU n 1 121 GLU n 1 122 VAL n 1 123 ARG n 1 124 ARG n 1 125 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TM1081, TM_1081' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK200 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name MH4a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y1081_THEMA _struct_ref.pdbx_db_accession Q9X0H0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFPYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSP NEKVERVLSLTNLDRIVKIYDTISEAMEEVRRK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3F43 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X0H0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 113 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3F43 MSE A 1 ? UNP Q9X0H0 ? ? 'expression tag' -11 1 1 3F43 GLY A 2 ? UNP Q9X0H0 ? ? 'expression tag' -10 2 1 3F43 SER A 3 ? UNP Q9X0H0 ? ? 'expression tag' -9 3 1 3F43 ASP A 4 ? UNP Q9X0H0 ? ? 'expression tag' -8 4 1 3F43 LYS A 5 ? UNP Q9X0H0 ? ? 'expression tag' -7 5 1 3F43 ILE A 6 ? UNP Q9X0H0 ? ? 'expression tag' -6 6 1 3F43 HIS A 7 ? UNP Q9X0H0 ? ? 'expression tag' -5 7 1 3F43 HIS A 8 ? UNP Q9X0H0 ? ? 'expression tag' -4 8 1 3F43 HIS A 9 ? UNP Q9X0H0 ? ? 'expression tag' -3 9 1 3F43 HIS A 10 ? UNP Q9X0H0 ? ? 'expression tag' -2 10 1 3F43 HIS A 11 ? UNP Q9X0H0 ? ? 'expression tag' -1 11 1 3F43 HIS A 12 ? UNP Q9X0H0 ? ? 'expression tag' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3F43 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.67 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;38.0% polyethylene glycol 400, 0.2M magnesium chloride, 0.1M citric acid pH 5.67, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2008-10-11 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94645 1.0 2 0.97967 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list 0.94645,0.97967 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3F43 _reflns.d_resolution_high 1.59 _reflns.d_resolution_low 29.881 _reflns.number_obs 19931 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.percent_possible_obs 99.600 _reflns.B_iso_Wilson_estimate 23.628 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.050 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.59 1.65 13950 ? 3793 0.725 1.5 ? ? ? ? ? 99.40 1 1 1.65 1.71 12353 ? 3342 0.557 2.1 ? ? ? ? ? 99.20 2 1 1.71 1.79 13761 ? 3688 0.421 2.7 ? ? ? ? ? 99.00 3 1 1.79 1.88 13207 ? 3498 0.287 4.1 ? ? ? ? ? 99.60 4 1 1.88 2.00 14210 ? 3746 0.178 6.4 ? ? ? ? ? 99.80 5 1 2.00 2.16 14428 ? 3789 0.112 10.1 ? ? ? ? ? 99.60 6 1 2.16 2.37 15974 ? 3541 0.097 14.4 ? ? ? ? ? 99.80 7 1 2.37 2.72 23513 ? 3729 0.102 18.5 ? ? ? ? ? 99.80 8 1 2.72 3.42 27794 ? 3632 0.071 26.5 ? ? ? ? ? 100.00 9 1 3.42 29.881 28397 ? 3702 0.053 33.3 ? ? ? ? ? 99.70 10 1 # _refine.entry_id 3F43 _refine.ls_d_res_high 1.590 _refine.ls_d_res_low 29.881 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.700 _refine.ls_number_reflns_obs 19865 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;(1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (3). ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. (4). CL IONS AND PEG 400 FRAGMENTS (1PE AND PEG) FROM CRYSTALLIZATION SOLUTION WERE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_R_work 0.178 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.209 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1013 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.405 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.760 _refine.aniso_B[2][2] 0.760 _refine.aniso_B[3][3] -1.520 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.082 _refine.pdbx_overall_ESU_R_Free 0.084 _refine.overall_SU_ML 0.058 _refine.overall_SU_B 3.187 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 77.55 _refine.B_iso_min 12.50 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 941 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1088 _refine_hist.d_res_high 1.590 _refine_hist.d_res_low 29.881 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1053 0.015 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 723 0.010 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1417 1.486 1.969 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 1777 1.108 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 129 5.423 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 44 30.615 24.545 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 184 11.676 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 3 16.932 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 159 0.102 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1139 0.006 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 207 0.002 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 207 0.236 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 688 0.169 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 524 0.178 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 498 0.087 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 87 0.159 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 12 0.179 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 36 0.208 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 14 0.157 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 682 2.288 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 248 0.480 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1026 2.966 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 459 4.977 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 391 7.342 11.000 ? ? # _refine_ls_shell.d_res_high 1.590 _refine_ls_shell.d_res_low 1.631 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.650 _refine_ls_shell.number_reflns_R_work 1349 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.250 _refine_ls_shell.R_factor_R_free 0.330 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1411 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F43 _struct.title 'Crystal structure of a putative anti-sigma factor antagonist (tm1081) from thermotoga maritima at 1.59 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Stas domain, spoiiaa-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, transcription ; _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.entry_id 3F43 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 35 ? PHE A 47 ? ASN A 23 PHE A 35 1 ? 13 HELX_P HELX_P2 2 LEU A 48 ? GLY A 51 ? LEU A 36 GLY A 39 5 ? 4 HELX_P HELX_P3 3 ASP A 66 ? GLY A 84 ? ASP A 54 GLY A 72 1 ? 19 HELX_P HELX_P4 4 ASN A 93 ? THR A 103 ? ASN A 81 THR A 91 1 ? 11 HELX_P HELX_P5 5 ASN A 104 ? ILE A 108 ? ASN A 92 ILE A 96 5 ? 5 HELX_P HELX_P6 6 THR A 114 ? ARG A 124 ? THR A 102 ARG A 112 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N A ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale2 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N B ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A MSE 13 C A ? ? 1_555 A PHE 14 N ? ? A MSE 1 A PHE 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale4 covale both ? A MSE 13 C B ? ? 1_555 A PHE 14 N ? ? A MSE 1 A PHE 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A LEU 25 C ? ? ? 1_555 A MSE 26 N ? ? A LEU 13 A MSE 14 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale6 covale both ? A MSE 26 C ? ? ? 1_555 A PRO 27 N ? ? A MSE 14 A PRO 15 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale7 covale both ? A ALA 118 C ? ? ? 1_555 A MSE 119 N A ? A ALA 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? A ALA 118 C ? ? ? 1_555 A MSE 119 N B ? A ALA 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? A MSE 119 C A ? ? 1_555 A GLU 120 N ? ? A MSE 107 A GLU 108 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A MSE 119 C B ? ? 1_555 A GLU 120 N ? ? A MSE 107 A GLU 108 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 16 ? VAL A 19 ? TYR A 4 VAL A 7 A 2 VAL A 22 ? LEU A 25 ? VAL A 10 LEU A 13 A 3 LYS A 54 ? VAL A 58 ? LYS A 42 VAL A 46 A 4 PHE A 86 ? VAL A 90 ? PHE A 74 VAL A 78 A 5 LYS A 110 ? TYR A 112 ? LYS A 98 TYR A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 17 ? N LYS A 5 O ILE A 24 ? O ILE A 12 A 2 3 N LEU A 25 ? N LEU A 13 O PHE A 56 ? O PHE A 44 A 3 4 N LEU A 57 ? N LEU A 45 O ALA A 88 ? O ALA A 76 A 4 5 N LEU A 89 ? N LEU A 77 O LYS A 110 ? O LYS A 98 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 114 ? 4 'BINDING SITE FOR RESIDUE CL A 114' AC2 Software A CL 115 ? 3 'BINDING SITE FOR RESIDUE CL A 115' AC3 Software A CL 116 ? 7 'BINDING SITE FOR RESIDUE CL A 116' AC4 Software A 1PE 117 ? 6 'BINDING SITE FOR RESIDUE 1PE A 117' AC5 Software A PEG 118 ? 3 'BINDING SITE FOR RESIDUE PEG A 118' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 37 ? HIS A 25 . ? 1_555 ? 2 AC1 4 LYS A 78 ? LYS A 66 . ? 7_555 ? 3 AC1 4 HOH G . ? HOH A 140 . ? 7_555 ? 4 AC1 4 HOH G . ? HOH A 234 . ? 1_555 ? 5 AC2 3 LYS A 40 ? LYS A 28 . ? 1_555 ? 6 AC2 3 HOH G . ? HOH A 212 . ? 1_555 ? 7 AC2 3 HOH G . ? HOH A 217 . ? 1_555 ? 8 AC3 7 HIS A 37 ? HIS A 25 . ? 7_555 ? 9 AC3 7 PHE A 68 ? PHE A 56 . ? 7_555 ? 10 AC3 7 LYS A 78 ? LYS A 66 . ? 1_555 ? 11 AC3 7 1PE E . ? 1PE A 117 . ? 4_454 ? 12 AC3 7 HOH G . ? HOH A 139 . ? 7_555 ? 13 AC3 7 HOH G . ? HOH A 140 . ? 1_555 ? 14 AC3 7 HOH G . ? HOH A 193 . ? 1_555 ? 15 AC4 6 LYS A 17 ? LYS A 5 . ? 1_555 ? 16 AC4 6 VAL A 19 ? VAL A 7 . ? 1_555 ? 17 AC4 6 MSE A 26 ? MSE A 14 . ? 1_555 ? 18 AC4 6 ILE A 33 ? ILE A 21 . ? 5_555 ? 19 AC4 6 SER A 81 ? SER A 69 . ? 3_555 ? 20 AC4 6 CL D . ? CL A 116 . ? 3_555 ? 21 AC5 3 ARG A 107 ? ARG A 95 . ? 1_555 ? 22 AC5 3 LYS A 110 ? LYS A 98 . ? 1_555 ? 23 AC5 3 HOH G . ? HOH A 196 . ? 1_555 ? # _atom_sites.entry_id 3F43 _atom_sites.fract_transf_matrix[1][1] 0.020121 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020121 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008801 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 -4 HIS HIS A . n A 1 9 HIS 9 -3 -3 HIS HIS A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 PHE 14 2 2 PHE PHE A . n A 1 15 PRO 15 3 3 PRO PRO A . n A 1 16 TYR 16 4 4 TYR TYR A . n A 1 17 LYS 17 5 5 LYS LYS A . n A 1 18 ILE 18 6 6 ILE ILE A . n A 1 19 VAL 19 7 7 VAL VAL A . n A 1 20 ASP 20 8 8 ASP ASP A . n A 1 21 ASP 21 9 9 ASP ASP A . n A 1 22 VAL 22 10 10 VAL VAL A . n A 1 23 VAL 23 11 11 VAL VAL A . n A 1 24 ILE 24 12 12 ILE ILE A . n A 1 25 LEU 25 13 13 LEU LEU A . n A 1 26 MSE 26 14 14 MSE MSE A . n A 1 27 PRO 27 15 15 PRO PRO A . n A 1 28 ASN 28 16 16 ASN ASN A . n A 1 29 LYS 29 17 17 LYS LYS A . n A 1 30 GLU 30 18 18 GLU GLU A . n A 1 31 LEU 31 19 19 LEU LEU A . n A 1 32 ASN 32 20 20 ASN ASN A . n A 1 33 ILE 33 21 21 ILE ILE A . n A 1 34 GLU 34 22 22 GLU GLU A . n A 1 35 ASN 35 23 23 ASN ASN A . n A 1 36 ALA 36 24 24 ALA ALA A . n A 1 37 HIS 37 25 25 HIS HIS A . n A 1 38 LEU 38 26 26 LEU LEU A . n A 1 39 PHE 39 27 27 PHE PHE A . n A 1 40 LYS 40 28 28 LYS LYS A . n A 1 41 LYS 41 29 29 LYS LYS A . n A 1 42 TRP 42 30 30 TRP TRP A . n A 1 43 VAL 43 31 31 VAL VAL A . n A 1 44 PHE 44 32 32 PHE PHE A . n A 1 45 ASP 45 33 33 ASP ASP A . n A 1 46 GLU 46 34 34 GLU GLU A . n A 1 47 PHE 47 35 35 PHE PHE A . n A 1 48 LEU 48 36 36 LEU LEU A . n A 1 49 ASN 49 37 37 ASN ASN A . n A 1 50 LYS 50 38 38 LYS LYS A . n A 1 51 GLY 51 39 39 GLY GLY A . n A 1 52 TYR 52 40 40 TYR TYR A . n A 1 53 ASN 53 41 41 ASN ASN A . n A 1 54 LYS 54 42 42 LYS LYS A . n A 1 55 ILE 55 43 43 ILE ILE A . n A 1 56 PHE 56 44 44 PHE PHE A . n A 1 57 LEU 57 45 45 LEU LEU A . n A 1 58 VAL 58 46 46 VAL VAL A . n A 1 59 LEU 59 47 47 LEU LEU A . n A 1 60 SER 60 48 48 SER SER A . n A 1 61 ASP 61 49 49 ASP ASP A . n A 1 62 VAL 62 50 50 VAL VAL A . n A 1 63 GLU 63 51 51 GLU GLU A . n A 1 64 SER 64 52 52 SER SER A . n A 1 65 ILE 65 53 53 ILE ILE A . n A 1 66 ASP 66 54 54 ASP ASP A . n A 1 67 SER 67 55 55 SER SER A . n A 1 68 PHE 68 56 56 PHE PHE A . n A 1 69 SER 69 57 57 SER SER A . n A 1 70 LEU 70 58 58 LEU LEU A . n A 1 71 GLY 71 59 59 GLY GLY A . n A 1 72 VAL 72 60 60 VAL VAL A . n A 1 73 ILE 73 61 61 ILE ILE A . n A 1 74 VAL 74 62 62 VAL VAL A . n A 1 75 ASN 75 63 63 ASN ASN A . n A 1 76 ILE 76 64 64 ILE ILE A . n A 1 77 LEU 77 65 65 LEU LEU A . n A 1 78 LYS 78 66 66 LYS LYS A . n A 1 79 SER 79 67 67 SER SER A . n A 1 80 ILE 80 68 68 ILE ILE A . n A 1 81 SER 81 69 69 SER SER A . n A 1 82 SER 82 70 70 SER SER A . n A 1 83 SER 83 71 71 SER SER A . n A 1 84 GLY 84 72 72 GLY GLY A . n A 1 85 GLY 85 73 73 GLY GLY A . n A 1 86 PHE 86 74 74 PHE PHE A . n A 1 87 PHE 87 75 75 PHE PHE A . n A 1 88 ALA 88 76 76 ALA ALA A . n A 1 89 LEU 89 77 77 LEU LEU A . n A 1 90 VAL 90 78 78 VAL VAL A . n A 1 91 SER 91 79 79 SER SER A . n A 1 92 PRO 92 80 80 PRO PRO A . n A 1 93 ASN 93 81 81 ASN ASN A . n A 1 94 GLU 94 82 82 GLU GLU A . n A 1 95 LYS 95 83 83 LYS LYS A . n A 1 96 VAL 96 84 84 VAL VAL A . n A 1 97 GLU 97 85 85 GLU GLU A . n A 1 98 ARG 98 86 86 ARG ARG A . n A 1 99 VAL 99 87 87 VAL VAL A . n A 1 100 LEU 100 88 88 LEU LEU A . n A 1 101 SER 101 89 89 SER SER A . n A 1 102 LEU 102 90 90 LEU LEU A . n A 1 103 THR 103 91 91 THR THR A . n A 1 104 ASN 104 92 92 ASN ASN A . n A 1 105 LEU 105 93 93 LEU LEU A . n A 1 106 ASP 106 94 94 ASP ASP A . n A 1 107 ARG 107 95 95 ARG ARG A . n A 1 108 ILE 108 96 96 ILE ILE A . n A 1 109 VAL 109 97 97 VAL VAL A . n A 1 110 LYS 110 98 98 LYS LYS A . n A 1 111 ILE 111 99 99 ILE ILE A . n A 1 112 TYR 112 100 100 TYR TYR A . n A 1 113 ASP 113 101 101 ASP ASP A . n A 1 114 THR 114 102 102 THR THR A . n A 1 115 ILE 115 103 103 ILE ILE A . n A 1 116 SER 116 104 104 SER SER A . n A 1 117 GLU 117 105 105 GLU GLU A . n A 1 118 ALA 118 106 106 ALA ALA A . n A 1 119 MSE 119 107 107 MSE MSE A . n A 1 120 GLU 120 108 108 GLU GLU A . n A 1 121 GLU 121 109 109 GLU GLU A . n A 1 122 VAL 122 110 110 VAL VAL A . n A 1 123 ARG 123 111 111 ARG ARG A . n A 1 124 ARG 124 112 112 ARG ARG A . n A 1 125 LYS 125 113 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 114 1 CL CL A . C 2 CL 1 115 2 CL CL A . D 2 CL 1 116 3 CL CL A . E 3 1PE 1 117 4 1PE 1PE A . F 4 PEG 1 118 5 PEG PEG A . G 5 HOH 1 119 119 HOH HOH A . G 5 HOH 2 120 120 HOH HOH A . G 5 HOH 3 121 121 HOH HOH A . G 5 HOH 4 122 122 HOH HOH A . G 5 HOH 5 123 123 HOH HOH A . G 5 HOH 6 124 124 HOH HOH A . G 5 HOH 7 125 125 HOH HOH A . G 5 HOH 8 126 126 HOH HOH A . G 5 HOH 9 127 127 HOH HOH A . G 5 HOH 10 128 128 HOH HOH A . G 5 HOH 11 129 129 HOH HOH A . G 5 HOH 12 130 130 HOH HOH A . G 5 HOH 13 131 131 HOH HOH A . G 5 HOH 14 132 132 HOH HOH A . G 5 HOH 15 133 133 HOH HOH A . G 5 HOH 16 134 134 HOH HOH A . G 5 HOH 17 135 135 HOH HOH A . G 5 HOH 18 136 136 HOH HOH A . G 5 HOH 19 137 6 HOH HOH A . G 5 HOH 20 138 7 HOH HOH A . G 5 HOH 21 139 8 HOH HOH A . G 5 HOH 22 140 9 HOH HOH A . G 5 HOH 23 141 10 HOH HOH A . G 5 HOH 24 142 11 HOH HOH A . G 5 HOH 25 143 12 HOH HOH A . G 5 HOH 26 144 13 HOH HOH A . G 5 HOH 27 145 14 HOH HOH A . G 5 HOH 28 146 15 HOH HOH A . G 5 HOH 29 147 16 HOH HOH A . G 5 HOH 30 148 17 HOH HOH A . G 5 HOH 31 149 18 HOH HOH A . G 5 HOH 32 150 19 HOH HOH A . G 5 HOH 33 151 20 HOH HOH A . G 5 HOH 34 152 21 HOH HOH A . G 5 HOH 35 153 22 HOH HOH A . G 5 HOH 36 154 23 HOH HOH A . G 5 HOH 37 155 24 HOH HOH A . G 5 HOH 38 156 25 HOH HOH A . G 5 HOH 39 157 26 HOH HOH A . G 5 HOH 40 158 27 HOH HOH A . G 5 HOH 41 159 28 HOH HOH A . G 5 HOH 42 160 29 HOH HOH A . G 5 HOH 43 161 30 HOH HOH A . G 5 HOH 44 162 31 HOH HOH A . G 5 HOH 45 163 32 HOH HOH A . G 5 HOH 46 164 33 HOH HOH A . G 5 HOH 47 165 34 HOH HOH A . G 5 HOH 48 166 35 HOH HOH A . G 5 HOH 49 167 36 HOH HOH A . G 5 HOH 50 168 37 HOH HOH A . G 5 HOH 51 169 38 HOH HOH A . G 5 HOH 52 170 39 HOH HOH A . G 5 HOH 53 171 40 HOH HOH A . G 5 HOH 54 172 41 HOH HOH A . G 5 HOH 55 173 42 HOH HOH A . G 5 HOH 56 174 43 HOH HOH A . G 5 HOH 57 175 44 HOH HOH A . G 5 HOH 58 176 45 HOH HOH A . G 5 HOH 59 177 46 HOH HOH A . G 5 HOH 60 178 47 HOH HOH A . G 5 HOH 61 179 48 HOH HOH A . G 5 HOH 62 180 49 HOH HOH A . G 5 HOH 63 181 50 HOH HOH A . G 5 HOH 64 182 51 HOH HOH A . G 5 HOH 65 183 52 HOH HOH A . G 5 HOH 66 184 53 HOH HOH A . G 5 HOH 67 185 54 HOH HOH A . G 5 HOH 68 186 55 HOH HOH A . G 5 HOH 69 187 56 HOH HOH A . G 5 HOH 70 188 57 HOH HOH A . G 5 HOH 71 189 58 HOH HOH A . G 5 HOH 72 190 59 HOH HOH A . G 5 HOH 73 191 60 HOH HOH A . G 5 HOH 74 192 61 HOH HOH A . G 5 HOH 75 193 62 HOH HOH A . G 5 HOH 76 194 63 HOH HOH A . G 5 HOH 77 195 64 HOH HOH A . G 5 HOH 78 196 65 HOH HOH A . G 5 HOH 79 197 66 HOH HOH A . G 5 HOH 80 198 67 HOH HOH A . G 5 HOH 81 199 68 HOH HOH A . G 5 HOH 82 200 69 HOH HOH A . G 5 HOH 83 201 70 HOH HOH A . G 5 HOH 84 202 71 HOH HOH A . G 5 HOH 85 203 72 HOH HOH A . G 5 HOH 86 204 73 HOH HOH A . G 5 HOH 87 205 74 HOH HOH A . G 5 HOH 88 206 75 HOH HOH A . G 5 HOH 89 207 76 HOH HOH A . G 5 HOH 90 208 77 HOH HOH A . G 5 HOH 91 209 78 HOH HOH A . G 5 HOH 92 210 79 HOH HOH A . G 5 HOH 93 211 80 HOH HOH A . G 5 HOH 94 212 81 HOH HOH A . G 5 HOH 95 213 82 HOH HOH A . G 5 HOH 96 214 83 HOH HOH A . G 5 HOH 97 215 84 HOH HOH A . G 5 HOH 98 216 85 HOH HOH A . G 5 HOH 99 217 86 HOH HOH A . G 5 HOH 100 218 87 HOH HOH A . G 5 HOH 101 219 88 HOH HOH A . G 5 HOH 102 220 89 HOH HOH A . G 5 HOH 103 221 90 HOH HOH A . G 5 HOH 104 222 91 HOH HOH A . G 5 HOH 105 223 92 HOH HOH A . G 5 HOH 106 224 93 HOH HOH A . G 5 HOH 107 225 94 HOH HOH A . G 5 HOH 108 226 95 HOH HOH A . G 5 HOH 109 227 96 HOH HOH A . G 5 HOH 110 228 97 HOH HOH A . G 5 HOH 111 229 98 HOH HOH A . G 5 HOH 112 230 99 HOH HOH A . G 5 HOH 113 231 100 HOH HOH A . G 5 HOH 114 232 111 HOH HOH A . G 5 HOH 115 233 112 HOH HOH A . G 5 HOH 116 234 113 HOH HOH A . G 5 HOH 117 235 114 HOH HOH A . G 5 HOH 118 236 115 HOH HOH A . G 5 HOH 119 237 116 HOH HOH A . G 5 HOH 120 238 117 HOH HOH A . G 5 HOH 121 239 118 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 26 A MSE 14 ? MET SELENOMETHIONINE 3 A MSE 119 A MSE 107 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2940 ? 1 MORE -82 ? 1 'SSA (A^2)' 12130 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.4423 _pdbx_refine_tls.origin_y 25.7872 _pdbx_refine_tls.origin_z 7.1158 _pdbx_refine_tls.T[1][1] -0.0615 _pdbx_refine_tls.T[2][2] -0.0637 _pdbx_refine_tls.T[3][3] -0.0871 _pdbx_refine_tls.T[1][2] -0.0164 _pdbx_refine_tls.T[1][3] -0.0122 _pdbx_refine_tls.T[2][3] 0.0016 _pdbx_refine_tls.L[1][1] 1.3530 _pdbx_refine_tls.L[2][2] 2.3557 _pdbx_refine_tls.L[3][3] 2.1388 _pdbx_refine_tls.L[1][2] -0.3320 _pdbx_refine_tls.L[1][3] -0.9063 _pdbx_refine_tls.L[2][3] 0.9479 _pdbx_refine_tls.S[1][1] 0.0478 _pdbx_refine_tls.S[2][2] -0.0207 _pdbx_refine_tls.S[3][3] -0.0271 _pdbx_refine_tls.S[1][2] 0.0067 _pdbx_refine_tls.S[1][3] 0.1553 _pdbx_refine_tls.S[2][3] -0.0215 _pdbx_refine_tls.S[2][1] 0.0579 _pdbx_refine_tls.S[3][1] -0.0490 _pdbx_refine_tls.S[3][2] -0.1785 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.beg_auth_seq_id -4 _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 112 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3F43 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHH.' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND2 A ASN 63 ? ? O A HOH 137 ? ? 2.19 2 1 OE2 A GLU 18 ? ? O A SER 52 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 0 ? ? -104.94 47.73 2 1 HIS A 0 ? ? -104.94 48.13 3 1 PHE A 35 ? ? -120.85 -68.41 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 9 ? OD1 ? A ASP 21 OD1 2 1 Y 1 A ASP 9 ? OD2 ? A ASP 21 OD2 3 1 Y 1 A LYS 42 ? CE ? A LYS 54 CE 4 1 Y 1 A LYS 42 ? NZ ? A LYS 54 NZ 5 1 Y 1 A LYS 83 ? CE ? A LYS 95 CE 6 1 Y 1 A LYS 83 ? NZ ? A LYS 95 NZ 7 1 Y 1 A LYS 98 ? CE ? A LYS 110 CE 8 1 Y 1 A LYS 98 ? NZ ? A LYS 110 NZ 9 1 Y 1 A ARG 112 ? CG ? A ARG 124 CG 10 1 Y 1 A ARG 112 ? CD ? A ARG 124 CD 11 1 Y 1 A ARG 112 ? NE ? A ARG 124 NE 12 1 Y 1 A ARG 112 ? CZ ? A ARG 124 CZ 13 1 Y 1 A ARG 112 ? NH1 ? A ARG 124 NH1 14 1 Y 1 A ARG 112 ? NH2 ? A ARG 124 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A LYS 113 ? A LYS 125 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'PENTAETHYLENE GLYCOL' 1PE 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH #