HEADER HYDROLASE 24-NOV-08 3FCX TITLE CRYSTAL STRUCTURE OF HUMAN ESTERASE D COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-FORMYLGLUTATHIONE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: G257D; COMPND 5 SYNONYM: FGH, ESTERASE D; COMPND 6 EC: 3.1.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS RETINOBLASTOMA, GENETIC MARKER, ESTERASE, HYDROLASE, CYTOPLASM, KEYWDS 2 CYTOPLASMIC VESICLE, POLYMORPHISM, SERINE ESTERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.WU,Y.LI,G.SONG,D.ZHANG,N.SHAW,Z.J.LIU REVDAT 4 01-NOV-23 3FCX 1 REMARK REVDAT 3 10-NOV-21 3FCX 1 REMARK SEQADV LINK REVDAT 2 12-MAY-09 3FCX 1 JRNL REVDAT 1 09-DEC-08 3FCX 0 JRNL AUTH D.WU,Y.LI,G.SONG,D.ZHANG,N.SHAW,Z.J.LIU JRNL TITL CRYSTAL STRUCTURE OF HUMAN ESTERASE D: A POTENTIAL GENETIC JRNL TITL 2 MARKER OF RETINOBLASTOMA JRNL REF FASEB J. V. 23 1441 2009 JRNL REFN ISSN 0892-6638 JRNL PMID 19126594 JRNL DOI 10.1096/FJ.08-125286 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 65767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 603 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.924 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4381 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5939 ; 1.032 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 5.489 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;35.342 ;24.433 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;11.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3371 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2701 ; 0.655 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4327 ; 1.253 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1680 ; 2.417 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1611 ; 2.930 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4381 ; 2.325 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 620 ; 1.431 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4257 ; 2.360 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.32500 REMARK 200 R SYM (I) : 0.32500 REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : 0.32500 REMARK 200 FOR SHELL : 20.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PV1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM ACETATE, 30% PEG4000, REMARK 280 PH5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.36200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 30.54726 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 61.53081 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 91 REMARK 465 GLY A 92 REMARK 465 GLU A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 SER A 96 REMARK 465 TRP A 97 REMARK 465 ASP A 98 REMARK 465 THR A 194 REMARK 465 ASP A 195 REMARK 465 GLN A 196 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 GLN A 215 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 41 REMARK 465 THR B 42 REMARK 465 GLY B 43 REMARK 465 LYS B 44 REMARK 465 ALA B 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 197 O HOH A 527 1.80 REMARK 500 NZ LYS A 198 O HOH A 540 1.93 REMARK 500 NH2 ARG A 86 O HOH A 383 2.12 REMARK 500 OE2 GLU A 245 O HOH A 426 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 PHE A 99 O HOH A 462 2546 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 58 C GLN A 59 N -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CA - CB - CG ANGL. DEV. = 13.0 DEGREES REMARK 500 GLU A 58 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 57 -162.55 -104.90 REMARK 500 GLU A 126 -60.62 -121.78 REMARK 500 SER A 149 -116.75 60.39 REMARK 500 ASP A 259 -158.22 -108.00 REMARK 500 THR B 55 -10.95 77.63 REMARK 500 THR B 57 -163.94 -108.77 REMARK 500 ALA B 103 45.70 -151.30 REMARK 500 PHE B 105 13.45 59.24 REMARK 500 SER B 149 -120.92 60.99 REMARK 500 ASP B 195 91.11 -69.92 REMARK 500 ASP B 259 -156.03 -105.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 284 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 544 O REMARK 620 2 HOH A 554 O 126.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 283 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 39 NZ REMARK 620 2 GLY B 75 O 122.3 REMARK 620 3 ASN B 281 OD1 115.2 120.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 284 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 104 O REMARK 620 2 VAL B 107 O 102.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 284 DBREF 3FCX A 1 282 UNP P10768 ESTD_HUMAN 1 282 DBREF 3FCX B 1 282 UNP P10768 ESTD_HUMAN 1 282 SEQADV 3FCX ASP A 257 UNP P10768 GLY 257 ENGINEERED MUTATION SEQADV 3FCX ASP B 257 UNP P10768 GLY 257 ENGINEERED MUTATION SEQRES 1 A 282 MET ALA LEU LYS GLN ILE SER SER ASN LYS CYS PHE GLY SEQRES 2 A 282 GLY LEU GLN LYS VAL PHE GLU HIS ASP SER VAL GLU LEU SEQRES 3 A 282 ASN CYS LYS MET LYS PHE ALA VAL TYR LEU PRO PRO LYS SEQRES 4 A 282 ALA GLU THR GLY LYS CYS PRO ALA LEU TYR TRP LEU SER SEQRES 5 A 282 GLY LEU THR CYS THR GLU GLN ASN PHE ILE SER LYS SER SEQRES 6 A 282 GLY TYR HIS GLN SER ALA SER GLU HIS GLY LEU VAL VAL SEQRES 7 A 282 ILE ALA PRO ASP THR SER PRO ARG GLY CYS ASN ILE LYS SEQRES 8 A 282 GLY GLU ASP GLU SER TRP ASP PHE GLY THR GLY ALA GLY SEQRES 9 A 282 PHE TYR VAL ASP ALA THR GLU ASP PRO TRP LYS THR ASN SEQRES 10 A 282 TYR ARG MET TYR SER TYR VAL THR GLU GLU LEU PRO GLN SEQRES 11 A 282 LEU ILE ASN ALA ASN PHE PRO VAL ASP PRO GLN ARG MET SEQRES 12 A 282 SER ILE PHE GLY HIS SER MET GLY GLY HIS GLY ALA LEU SEQRES 13 A 282 ILE CYS ALA LEU LYS ASN PRO GLY LYS TYR LYS SER VAL SEQRES 14 A 282 SER ALA PHE ALA PRO ILE CYS ASN PRO VAL LEU CYS PRO SEQRES 15 A 282 TRP GLY LYS LYS ALA PHE SER GLY TYR LEU GLY THR ASP SEQRES 16 A 282 GLN SER LYS TRP LYS ALA TYR ASP ALA THR HIS LEU VAL SEQRES 17 A 282 LYS SER TYR PRO GLY SER GLN LEU ASP ILE LEU ILE ASP SEQRES 18 A 282 GLN GLY LYS ASP ASP GLN PHE LEU LEU ASP GLY GLN LEU SEQRES 19 A 282 LEU PRO ASP ASN PHE ILE ALA ALA CYS THR GLU LYS LYS SEQRES 20 A 282 ILE PRO VAL VAL PHE ARG LEU GLN GLU ASP TYR ASP HIS SEQRES 21 A 282 SER TYR TYR PHE ILE ALA THR PHE ILE THR ASP HIS ILE SEQRES 22 A 282 ARG HIS HIS ALA LYS TYR LEU ASN ALA SEQRES 1 B 282 MET ALA LEU LYS GLN ILE SER SER ASN LYS CYS PHE GLY SEQRES 2 B 282 GLY LEU GLN LYS VAL PHE GLU HIS ASP SER VAL GLU LEU SEQRES 3 B 282 ASN CYS LYS MET LYS PHE ALA VAL TYR LEU PRO PRO LYS SEQRES 4 B 282 ALA GLU THR GLY LYS CYS PRO ALA LEU TYR TRP LEU SER SEQRES 5 B 282 GLY LEU THR CYS THR GLU GLN ASN PHE ILE SER LYS SER SEQRES 6 B 282 GLY TYR HIS GLN SER ALA SER GLU HIS GLY LEU VAL VAL SEQRES 7 B 282 ILE ALA PRO ASP THR SER PRO ARG GLY CYS ASN ILE LYS SEQRES 8 B 282 GLY GLU ASP GLU SER TRP ASP PHE GLY THR GLY ALA GLY SEQRES 9 B 282 PHE TYR VAL ASP ALA THR GLU ASP PRO TRP LYS THR ASN SEQRES 10 B 282 TYR ARG MET TYR SER TYR VAL THR GLU GLU LEU PRO GLN SEQRES 11 B 282 LEU ILE ASN ALA ASN PHE PRO VAL ASP PRO GLN ARG MET SEQRES 12 B 282 SER ILE PHE GLY HIS SER MET GLY GLY HIS GLY ALA LEU SEQRES 13 B 282 ILE CYS ALA LEU LYS ASN PRO GLY LYS TYR LYS SER VAL SEQRES 14 B 282 SER ALA PHE ALA PRO ILE CYS ASN PRO VAL LEU CYS PRO SEQRES 15 B 282 TRP GLY LYS LYS ALA PHE SER GLY TYR LEU GLY THR ASP SEQRES 16 B 282 GLN SER LYS TRP LYS ALA TYR ASP ALA THR HIS LEU VAL SEQRES 17 B 282 LYS SER TYR PRO GLY SER GLN LEU ASP ILE LEU ILE ASP SEQRES 18 B 282 GLN GLY LYS ASP ASP GLN PHE LEU LEU ASP GLY GLN LEU SEQRES 19 B 282 LEU PRO ASP ASN PHE ILE ALA ALA CYS THR GLU LYS LYS SEQRES 20 B 282 ILE PRO VAL VAL PHE ARG LEU GLN GLU ASP TYR ASP HIS SEQRES 21 B 282 SER TYR TYR PHE ILE ALA THR PHE ILE THR ASP HIS ILE SEQRES 22 B 282 ARG HIS HIS ALA LYS TYR LEU ASN ALA HET MG A 283 1 HET CA A 284 1 HET CA B 283 1 HET CA B 284 1 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION FORMUL 3 MG MG 2+ FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *603(H2 O) HELIX 1 1 PRO A 37 THR A 42 5 6 HELIX 2 2 GLU A 58 GLU A 58 1 1 HELIX 3 3 GLN A 59 SER A 65 1 7 HELIX 4 4 TYR A 67 GLY A 75 1 9 HELIX 5 5 PRO A 113 TYR A 118 1 6 HELIX 6 6 ARG A 119 GLU A 126 1 8 HELIX 7 7 GLU A 126 PHE A 136 1 11 HELIX 8 8 SER A 149 LYS A 161 1 13 HELIX 9 9 ASN A 177 LEU A 180 5 4 HELIX 10 10 CYS A 181 GLY A 193 1 13 HELIX 11 11 LYS A 198 TYR A 202 5 5 HELIX 12 12 ASP A 203 LYS A 209 1 7 HELIX 13 13 ASP A 226 ASP A 231 1 6 HELIX 14 14 LEU A 235 LYS A 246 1 12 HELIX 15 15 SER A 261 LEU A 280 1 20 HELIX 16 16 GLN B 59 SER B 65 1 7 HELIX 17 17 TYR B 67 HIS B 74 1 8 HELIX 18 18 ARG B 119 GLU B 126 1 8 HELIX 19 19 GLU B 126 PHE B 136 1 11 HELIX 20 20 SER B 149 LYS B 161 1 13 HELIX 21 21 ASN B 177 LEU B 180 5 4 HELIX 22 22 CYS B 181 GLY B 193 1 13 HELIX 23 23 ASP B 195 ALA B 201 1 7 HELIX 24 24 ASP B 203 TYR B 211 1 9 HELIX 25 25 ASP B 226 ASP B 231 1 6 HELIX 26 26 LEU B 235 LYS B 247 1 13 HELIX 27 27 SER B 261 ASN B 281 1 21 SHEET 1 A 9 LYS A 4 CYS A 11 0 SHEET 2 A 9 GLY A 14 SER A 23 -1 O GLN A 16 N ASN A 9 SHEET 3 A 9 CYS A 28 LEU A 36 -1 O VAL A 34 N LYS A 17 SHEET 4 A 9 VAL A 77 PRO A 81 -1 O ALA A 80 N ALA A 33 SHEET 5 A 9 CYS A 45 LEU A 51 1 N TRP A 50 O ILE A 79 SHEET 6 A 9 VAL A 138 HIS A 148 1 O ASP A 139 N CYS A 45 SHEET 7 A 9 VAL A 169 PHE A 172 1 O PHE A 172 N GLY A 147 SHEET 8 A 9 ILE A 218 GLY A 223 1 O ASP A 221 N ALA A 171 SHEET 9 A 9 VAL A 250 GLN A 255 1 O GLN A 255 N GLN A 222 SHEET 1 B 9 LYS B 4 CYS B 11 0 SHEET 2 B 9 GLY B 14 SER B 23 -1 O VAL B 18 N ILE B 6 SHEET 3 B 9 CYS B 28 LEU B 36 -1 O VAL B 34 N LYS B 17 SHEET 4 B 9 VAL B 77 PRO B 81 -1 O VAL B 78 N TYR B 35 SHEET 5 B 9 ALA B 47 LEU B 51 1 N TRP B 50 O ILE B 79 SHEET 6 B 9 MET B 143 HIS B 148 1 O PHE B 146 N LEU B 51 SHEET 7 B 9 VAL B 169 PHE B 172 1 O PHE B 172 N GLY B 147 SHEET 8 B 9 ILE B 218 GLY B 223 1 O LEU B 219 N ALA B 171 SHEET 9 B 9 VAL B 250 GLN B 255 1 O GLN B 255 N GLN B 222 LINK CA CA A 284 O HOH A 544 1555 1555 2.41 LINK CA CA A 284 O HOH A 554 1555 1555 2.43 LINK NZ LYS B 39 CA CA B 283 1555 1555 2.80 LINK O GLY B 75 CA CA B 283 1555 1555 2.85 LINK O GLY B 104 CA CA B 284 1555 1555 2.84 LINK O VAL B 107 CA CA B 284 1555 1555 2.80 LINK OD1 ASN B 281 CA CA B 283 1555 1555 2.77 CISPEP 1 ASP A 112 PRO A 113 0 1.43 CISPEP 2 ASP B 112 PRO B 113 0 2.94 SITE 1 AC1 4 HIS A 153 ILE A 175 PRO A 178 ALA A 204 SITE 1 AC2 5 GLN A 227 ASP A 259 HIS A 260 HOH A 544 SITE 2 AC2 5 HOH A 554 SITE 1 AC3 5 LYS B 39 PRO B 46 HIS B 74 GLY B 75 SITE 2 AC3 5 ASN B 281 SITE 1 AC4 4 GLY B 104 VAL B 107 TYR B 118 MET B 120 CRYST1 51.542 70.724 65.014 90.00 108.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019402 0.000000 0.006618 0.00000 SCALE2 0.000000 0.014139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016252 0.00000