HEADER LYASE 27-NOV-08 3FE4 TITLE CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE VI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBONIC ANHYDRASE VI, UNP RESIDUES 21-290; COMPND 5 SYNONYM: CARBONIC ANHYDRASE VI, CA-VI, CARBONATE DEHYDRATASE VI, COMPND 6 SECRETED CARBONIC ANHYDRASE, SALIVARY CARBONIC ANHYDRASE; COMPND 7 EC: 4.2.1.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS CARBONIC ANHYDRASE, SECRETION, METAL BINDING, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, GLYCOPROTEIN, LYASE, METAL- KEYWDS 3 BINDING, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR E.S.PILKA,G.KOCHAN,E.KRYSZTOFINSKA,J.MUNIZ,W.W.YUE,A.K.ROOS,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,C.BOUNTRA,U.OPPERMANN, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 01-NOV-23 3FE4 1 REMARK SEQADV LINK REVDAT 5 01-NOV-17 3FE4 1 REMARK REVDAT 4 27-NOV-13 3FE4 1 JRNL REVDAT 3 13-JUL-11 3FE4 1 VERSN REVDAT 2 10-FEB-09 3FE4 1 ATOM REVDAT 1 16-DEC-08 3FE4 0 JRNL AUTH E.S.PILKA,G.KOCHAN,U.OPPERMANN,W.W.YUE JRNL TITL CRYSTAL STRUCTURE OF THE SECRETORY ISOZYME OF MAMMALIAN JRNL TITL 2 CARBONIC ANHYDRASES CA VI: IMPLICATIONS FOR BIOLOGICAL JRNL TITL 3 ASSEMBLY AND INHIBITOR DEVELOPMENT JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 419 485 2012 JRNL REFN ISSN 0006-291X JRNL PMID 22366092 JRNL DOI 10.1016/J.BBRC.2012.02.038 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0055 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 41862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2223 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2947 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : -2.00000 REMARK 3 B33 (A**2) : 0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.328 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4029 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2592 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5513 ; 1.562 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6313 ; 0.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 6.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;35.393 ;23.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 595 ;13.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4537 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 835 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2457 ; 2.795 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 984 ; 0.816 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3987 ; 4.267 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1572 ; 6.292 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1520 ; 8.448 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0292 53.7498 111.0246 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: 0.0405 REMARK 3 T33: 0.0766 T12: 0.0032 REMARK 3 T13: -0.0209 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.5745 L22: 1.6332 REMARK 3 L33: 0.7634 L12: 0.0059 REMARK 3 L13: 0.1629 L23: -0.0945 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: 0.0092 S13: 0.0297 REMARK 3 S21: 0.1967 S22: 0.0068 S23: -0.2097 REMARK 3 S31: -0.0068 S32: 0.0670 S33: 0.0244 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 280 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8503 53.3444 82.0705 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0314 REMARK 3 T33: 0.0142 T12: -0.0036 REMARK 3 T13: -0.0098 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6291 L22: 1.6176 REMARK 3 L33: 0.9441 L12: 0.0356 REMARK 3 L13: 0.1331 L23: -0.0273 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0648 S13: 0.0545 REMARK 3 S21: -0.3117 S22: 0.0235 S23: 0.0354 REMARK 3 S31: 0.1028 S32: 0.0513 S33: -0.0268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : 0.36700 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1RJ5, 1JCZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M MGCL2, 0.08M TRIS PH 8.5, 16% REMARK 280 W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.72050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.02400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.72050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.02400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 ASP A 22 REMARK 465 TRP A 23 REMARK 465 THR A 24 REMARK 465 TYR A 25 REMARK 465 SER A 26 REMARK 465 GLU A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 LEU A 30 REMARK 465 ASP A 31 REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 GLU A 120 REMARK 465 ASN A 280 REMARK 465 GLN A 281 REMARK 465 GLU A 282 REMARK 465 TYR A 283 REMARK 465 THR A 284 REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 465 SER A 287 REMARK 465 GLU A 288 REMARK 465 PHE A 289 REMARK 465 GLN A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ASN A 293 REMARK 465 LEU A 294 REMARK 465 TYR A 295 REMARK 465 PHE A 296 REMARK 465 GLN A 297 REMARK 465 MET B 20 REMARK 465 SER B 21 REMARK 465 ASP B 22 REMARK 465 TRP B 23 REMARK 465 THR B 24 REMARK 465 TYR B 25 REMARK 465 SER B 26 REMARK 465 GLU B 27 REMARK 465 GLY B 28 REMARK 465 ALA B 29 REMARK 465 LEU B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 32 REMARK 465 ALA B 117 REMARK 465 SER B 118 REMARK 465 SER B 119 REMARK 465 GLN B 281 REMARK 465 GLU B 282 REMARK 465 TYR B 283 REMARK 465 THR B 284 REMARK 465 LEU B 285 REMARK 465 GLY B 286 REMARK 465 SER B 287 REMARK 465 GLU B 288 REMARK 465 PHE B 289 REMARK 465 GLN B 290 REMARK 465 ALA B 291 REMARK 465 GLU B 292 REMARK 465 ASN B 293 REMARK 465 LEU B 294 REMARK 465 TYR B 295 REMARK 465 PHE B 296 REMARK 465 GLN B 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 34 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 56 CD CE NZ REMARK 470 LYS A 64 CE NZ REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 LYS A 147 CE NZ REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 ARG A 207 CD NE CZ NH1 NH2 REMARK 470 GLN A 210 CD OE1 NE2 REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 HIS A 260 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 261 CG OD1 ND2 REMARK 470 ASP A 262 CG OD1 OD2 REMARK 470 HIS B 34 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 56 CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 LYS B 169 NZ REMARK 470 ASN B 170 CG OD1 ND2 REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 ASN B 261 CG OD1 ND2 REMARK 470 ASP B 262 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 46 O HOH A 360 1.93 REMARK 500 OD2 ASP A 203 C1 GOL A 911 1.99 REMARK 500 NH1 ARG B 46 O HOH B 348 2.08 REMARK 500 O HOH B 342 O HOH B 374 2.15 REMARK 500 OD2 ASP B 200 C3 GOL B 910 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 64 -137.31 -109.88 REMARK 500 SER A 122 24.76 -143.68 REMARK 500 LYS A 169 -103.35 -154.87 REMARK 500 HIS A 260 79.50 -152.09 REMARK 500 ASN A 270 -119.36 61.11 REMARK 500 LYS B 64 -131.03 -108.46 REMARK 500 LYS B 169 -103.85 -160.61 REMARK 500 GLU B 226 57.95 -94.81 REMARK 500 ASN B 270 -118.54 57.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 279 ASN B 280 127.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE 6-COORDINATED ION IN THE ACTIVE SITE (LINK RECORD BELOW) HAS REMARK 600 BEEN IDENTIFIED AS MAGNESIUM FROM THE CRYSTALLISATION CONDITION. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 113 NE2 96.0 REMARK 620 3 HIS A 138 ND1 104.6 93.4 REMARK 620 4 HOH A 370 O 85.8 88.4 169.2 REMARK 620 5 HOH A 371 O 160.8 91.3 92.6 76.7 REMARK 620 6 HOH A 374 O 89.6 167.5 96.0 80.8 80.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 111 NE2 REMARK 620 2 HIS B 113 NE2 97.7 REMARK 620 3 HIS B 138 ND1 104.4 89.2 REMARK 620 4 HOH B 352 O 163.4 90.7 89.9 REMARK 620 5 HOH B 375 O 92.7 169.1 91.4 78.4 REMARK 620 6 HOH B 376 O 85.8 91.1 169.6 79.7 86.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 910 DBREF 3FE4 A 21 290 UNP P23280 CAH6_HUMAN 21 290 DBREF 3FE4 B 21 290 UNP P23280 CAH6_HUMAN 21 290 SEQADV 3FE4 MET A 20 UNP P23280 INITIATING METHIONINE SEQADV 3FE4 ALA A 291 UNP P23280 EXPRESSION TAG SEQADV 3FE4 GLU A 292 UNP P23280 EXPRESSION TAG SEQADV 3FE4 ASN A 293 UNP P23280 EXPRESSION TAG SEQADV 3FE4 LEU A 294 UNP P23280 EXPRESSION TAG SEQADV 3FE4 TYR A 295 UNP P23280 EXPRESSION TAG SEQADV 3FE4 PHE A 296 UNP P23280 EXPRESSION TAG SEQADV 3FE4 GLN A 297 UNP P23280 EXPRESSION TAG SEQADV 3FE4 MET B 20 UNP P23280 INITIATING METHIONINE SEQADV 3FE4 ALA B 291 UNP P23280 EXPRESSION TAG SEQADV 3FE4 GLU B 292 UNP P23280 EXPRESSION TAG SEQADV 3FE4 ASN B 293 UNP P23280 EXPRESSION TAG SEQADV 3FE4 LEU B 294 UNP P23280 EXPRESSION TAG SEQADV 3FE4 TYR B 295 UNP P23280 EXPRESSION TAG SEQADV 3FE4 PHE B 296 UNP P23280 EXPRESSION TAG SEQADV 3FE4 GLN B 297 UNP P23280 EXPRESSION TAG SEQRES 1 A 278 MET SER ASP TRP THR TYR SER GLU GLY ALA LEU ASP GLU SEQRES 2 A 278 ALA HIS TRP PRO GLN HIS TYR PRO ALA CYS GLY GLY GLN SEQRES 3 A 278 ARG GLN SER PRO ILE ASN LEU GLN ARG THR LYS VAL ARG SEQRES 4 A 278 TYR ASN PRO SER LEU LYS GLY LEU ASN MET THR GLY TYR SEQRES 5 A 278 GLU THR GLN ALA GLY GLU PHE PRO MET VAL ASN ASN GLY SEQRES 6 A 278 HIS THR VAL GLN ILE SER LEU PRO SER THR MET ARG MET SEQRES 7 A 278 THR VAL ALA ASP GLY THR VAL TYR ILE ALA GLN GLN MET SEQRES 8 A 278 HIS PHE HIS TRP GLY GLY ALA SER SER GLU ILE SER GLY SEQRES 9 A 278 SER GLU HIS THR VAL ASP GLY ILE ARG HIS VAL ILE GLU SEQRES 10 A 278 ILE HIS ILE VAL HIS TYR ASN SER LYS TYR LYS SER TYR SEQRES 11 A 278 ASP ILE ALA GLN ASP ALA PRO ASP GLY LEU ALA VAL LEU SEQRES 12 A 278 ALA ALA PHE VAL GLU VAL LYS ASN TYR PRO GLU ASN THR SEQRES 13 A 278 TYR TYR SER ASN PHE ILE SER HIS LEU ALA ASN ILE LYS SEQRES 14 A 278 TYR PRO GLY GLN ARG THR THR LEU THR GLY LEU ASP VAL SEQRES 15 A 278 GLN ASP MET LEU PRO ARG ASN LEU GLN HIS TYR TYR THR SEQRES 16 A 278 TYR HIS GLY SER LEU THR THR PRO PRO CYS THR GLU ASN SEQRES 17 A 278 VAL HIS TRP PHE VAL LEU ALA ASP PHE VAL LYS LEU SER SEQRES 18 A 278 ARG THR GLN VAL TRP LYS LEU GLU ASN SER LEU LEU ASP SEQRES 19 A 278 HIS ARG ASN LYS THR ILE HIS ASN ASP TYR ARG ARG THR SEQRES 20 A 278 GLN PRO LEU ASN HIS ARG VAL VAL GLU SER ASN PHE PRO SEQRES 21 A 278 ASN GLN GLU TYR THR LEU GLY SER GLU PHE GLN ALA GLU SEQRES 22 A 278 ASN LEU TYR PHE GLN SEQRES 1 B 278 MET SER ASP TRP THR TYR SER GLU GLY ALA LEU ASP GLU SEQRES 2 B 278 ALA HIS TRP PRO GLN HIS TYR PRO ALA CYS GLY GLY GLN SEQRES 3 B 278 ARG GLN SER PRO ILE ASN LEU GLN ARG THR LYS VAL ARG SEQRES 4 B 278 TYR ASN PRO SER LEU LYS GLY LEU ASN MET THR GLY TYR SEQRES 5 B 278 GLU THR GLN ALA GLY GLU PHE PRO MET VAL ASN ASN GLY SEQRES 6 B 278 HIS THR VAL GLN ILE SER LEU PRO SER THR MET ARG MET SEQRES 7 B 278 THR VAL ALA ASP GLY THR VAL TYR ILE ALA GLN GLN MET SEQRES 8 B 278 HIS PHE HIS TRP GLY GLY ALA SER SER GLU ILE SER GLY SEQRES 9 B 278 SER GLU HIS THR VAL ASP GLY ILE ARG HIS VAL ILE GLU SEQRES 10 B 278 ILE HIS ILE VAL HIS TYR ASN SER LYS TYR LYS SER TYR SEQRES 11 B 278 ASP ILE ALA GLN ASP ALA PRO ASP GLY LEU ALA VAL LEU SEQRES 12 B 278 ALA ALA PHE VAL GLU VAL LYS ASN TYR PRO GLU ASN THR SEQRES 13 B 278 TYR TYR SER ASN PHE ILE SER HIS LEU ALA ASN ILE LYS SEQRES 14 B 278 TYR PRO GLY GLN ARG THR THR LEU THR GLY LEU ASP VAL SEQRES 15 B 278 GLN ASP MET LEU PRO ARG ASN LEU GLN HIS TYR TYR THR SEQRES 16 B 278 TYR HIS GLY SER LEU THR THR PRO PRO CYS THR GLU ASN SEQRES 17 B 278 VAL HIS TRP PHE VAL LEU ALA ASP PHE VAL LYS LEU SER SEQRES 18 B 278 ARG THR GLN VAL TRP LYS LEU GLU ASN SER LEU LEU ASP SEQRES 19 B 278 HIS ARG ASN LYS THR ILE HIS ASN ASP TYR ARG ARG THR SEQRES 20 B 278 GLN PRO LEU ASN HIS ARG VAL VAL GLU SER ASN PHE PRO SEQRES 21 B 278 ASN GLN GLU TYR THR LEU GLY SER GLU PHE GLN ALA GLU SEQRES 22 B 278 ASN LEU TYR PHE GLN HET MG A 901 1 HET GOL A 911 6 HET MG B 902 1 HET GOL B 910 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *427(H2 O) HELIX 1 1 HIS A 34 TYR A 39 1 6 HELIX 2 2 PRO A 40 GLY A 44 5 5 HELIX 3 3 GLN A 53 VAL A 57 5 5 HELIX 4 4 SER A 148 GLN A 153 1 6 HELIX 5 5 ASN A 174 TYR A 176 5 3 HELIX 6 6 TYR A 177 LEU A 184 1 8 HELIX 7 7 ALA A 185 LYS A 188 5 4 HELIX 8 8 ASP A 200 LEU A 205 1 6 HELIX 9 9 SER A 240 SER A 250 1 11 HELIX 10 10 HIS B 34 TYR B 39 1 6 HELIX 11 11 PRO B 40 GLY B 44 5 5 HELIX 12 12 GLN B 53 VAL B 57 5 5 HELIX 13 13 SER B 148 GLN B 153 1 6 HELIX 14 14 ASN B 174 TYR B 176 5 3 HELIX 15 15 TYR B 177 LEU B 184 1 8 HELIX 16 16 ALA B 185 LYS B 188 5 4 HELIX 17 17 ASP B 200 LEU B 205 1 6 HELIX 18 18 SER B 240 SER B 250 1 11 SHEET 1 A 2 ASN A 51 LEU A 52 0 SHEET 2 A 2 THR A 127 VAL A 128 1 O THR A 127 N LEU A 52 SHEET 1 B10 ARG A 58 TYR A 59 0 SHEET 2 B10 GLU A 275 SER A 276 1 O SER A 276 N ARG A 58 SHEET 3 B10 TYR A 212 GLY A 217 -1 N THR A 214 O GLU A 275 SHEET 4 B10 VAL A 228 LEU A 233 -1 O VAL A 228 N GLY A 217 SHEET 5 B10 LEU A 159 GLU A 167 1 N ALA A 163 O PHE A 231 SHEET 6 B10 ILE A 135 ASN A 143 -1 N ILE A 137 O ALA A 164 SHEET 7 B10 VAL A 104 TRP A 114 -1 N ILE A 106 O TYR A 142 SHEET 8 B10 VAL A 87 SER A 90 -1 N ILE A 89 O MET A 110 SHEET 9 B10 GLN A 74 ASN A 82 -1 N VAL A 81 O GLN A 88 SHEET 10 B10 ARG A 193 LEU A 199 -1 O THR A 194 N MET A 80 SHEET 1 C 6 MET A 68 THR A 69 0 SHEET 2 C 6 ARG A 96 THR A 98 -1 O ARG A 96 N THR A 69 SHEET 3 C 6 VAL A 104 TRP A 114 -1 O TYR A 105 N MET A 97 SHEET 4 C 6 ILE A 135 ASN A 143 -1 O TYR A 142 N ILE A 106 SHEET 5 C 6 LEU A 159 GLU A 167 -1 O ALA A 164 N ILE A 137 SHEET 6 C 6 VAL A 237 LYS A 238 1 O VAL A 237 N PHE A 165 SHEET 1 D 2 ASN B 51 LEU B 52 0 SHEET 2 D 2 THR B 127 VAL B 128 1 O THR B 127 N LEU B 52 SHEET 1 E10 ARG B 58 TYR B 59 0 SHEET 2 E10 GLU B 275 SER B 276 1 O SER B 276 N ARG B 58 SHEET 3 E10 TYR B 212 GLY B 217 -1 N THR B 214 O GLU B 275 SHEET 4 E10 VAL B 228 LEU B 233 -1 O VAL B 232 N TYR B 213 SHEET 5 E10 LEU B 159 GLU B 167 1 N ALA B 163 O PHE B 231 SHEET 6 E10 ILE B 135 ASN B 143 -1 N ILE B 137 O ALA B 164 SHEET 7 E10 VAL B 104 TRP B 114 -1 N ILE B 106 O TYR B 142 SHEET 8 E10 VAL B 87 SER B 90 -1 N ILE B 89 O MET B 110 SHEET 9 E10 GLN B 74 ASN B 82 -1 N PRO B 79 O SER B 90 SHEET 10 E10 ARG B 193 LEU B 199 -1 O THR B 194 N MET B 80 SHEET 1 F 5 ARG B 96 THR B 98 0 SHEET 2 F 5 VAL B 104 TRP B 114 -1 O TYR B 105 N MET B 97 SHEET 3 F 5 ILE B 135 ASN B 143 -1 O TYR B 142 N ILE B 106 SHEET 4 F 5 LEU B 159 GLU B 167 -1 O ALA B 164 N ILE B 137 SHEET 5 F 5 VAL B 237 LYS B 238 1 O VAL B 237 N PHE B 165 SSBOND 1 CYS A 42 CYS A 224 1555 1555 2.08 SSBOND 2 CYS B 42 CYS B 224 1555 1555 2.08 LINK NE2 HIS A 111 MG MG A 901 1555 1555 2.18 LINK NE2 HIS A 113 MG MG A 901 1555 1555 2.20 LINK ND1 HIS A 138 MG MG A 901 1555 1555 2.15 LINK O HOH A 370 MG MG A 901 1555 1555 2.01 LINK O HOH A 371 MG MG A 901 1555 1555 2.23 LINK O HOH A 374 MG MG A 901 1555 1555 2.22 LINK NE2 HIS B 111 MG MG B 902 1555 1555 2.07 LINK NE2 HIS B 113 MG MG B 902 1555 1555 2.19 LINK ND1 HIS B 138 MG MG B 902 1555 1555 2.20 LINK O HOH B 352 MG MG B 902 1555 1555 2.17 LINK O HOH B 375 MG MG B 902 1555 1555 2.22 LINK O HOH B 376 MG MG B 902 1555 1555 2.07 CISPEP 1 SER A 48 PRO A 49 0 -1.88 CISPEP 2 PRO A 222 PRO A 223 0 7.03 CISPEP 3 SER B 48 PRO B 49 0 2.77 CISPEP 4 PRO B 222 PRO B 223 0 10.83 SITE 1 AC1 6 HIS A 111 HIS A 113 HIS A 138 HOH A 370 SITE 2 AC1 6 HOH A 371 HOH A 374 SITE 1 AC2 8 GLU A 72 THR A 73 TYR A 176 ASP A 200 SITE 2 AC2 8 GLN A 202 ASP A 203 GLU B 173 HOH B 393 SITE 1 AC3 6 HIS B 111 HIS B 113 HIS B 138 HOH B 352 SITE 2 AC3 6 HOH B 375 HOH B 376 SITE 1 AC4 5 GLU A 173 GLU B 72 ASP B 200 GLN B 202 SITE 2 AC4 5 ASP B 203 CRYST1 51.650 80.048 133.441 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007494 0.00000