data_3FE9 # _entry.id 3FE9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FE9 pdb_00003fe9 10.2210/pdb3fe9/pdb RCSB RCSB050481 ? ? WWPDB D_1000050481 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2H8V 'The same protein in apo form at pH 5.5' unspecified PDB 3BFA 'The same protein in complex with the QMP at pH 5.5' unspecified PDB 3BFB 'The same protein in complex with the 9-ODA at pH 5.5' unspecified PDB 3BJH 'The same protein in complex with the nBBSA at pH 5.5' unspecified PDB 3BFH 'The same protein in complex with the HDOA at pH 5.5' unspecified PDB 3CAB 'The same protein in complex with the nBBSA soaked at pH 7.0' unspecified PDB 3CDN 'The same protein in apo form soaked at pH 4.0' unspecified PDB 3CZ2 'The same protein in apo form at pH 7.0' unspecified PDB 3CZ0 'The same protein in complex with the QMP at pH 7.0' unspecified PDB 3CYZ 'The same protein in complex with the 9-ODA at pH 7.0' unspecified PDB 3CZ1 'The same protein in complex with the nBBSA at pH 7.0' unspecified PDB 3D75 'The mutant D35N of the same protein at pH 5.5' unspecified PDB 3D76 'The mutant D35N of the same protein soaked at pH 7.0' unspecified PDB 3D77 'The mutant D35N of the same protein soaked at pH 4.0' unspecified PDB 3D78 'The mutant D35N of the same protein at pH 7.0' unspecified PDB 3D73 'The mutant D35A of the same protein at pH 7.0' unspecified PDB 3D74 'The mutant D35A of the same protein soaked at pH 5.5' unspecified PDB 3FE6 'The same protein in complex with a serendipitous ligand at pH 5.5' unspecified PDB 3FE8 'The same protein in complex with a serendipitous ligand soaked at pH 4.0' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FE9 _pdbx_database_status.recvd_initial_deposition_date 2008-11-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pesenti, M.E.' 1 'Spinelli, S.' 2 'Bezirard, V.' 3 'Briand, L.' 4 'Pernollet, J.C.' 5 'Tegoni, M.' 6 'Cambillau, C.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Queen bee pheromone binding protein pH induced domain-swapping favors pheromone release' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Structural basis of the honey bee PBP pheromone and pH-induced conformational change' J.Mol.Biol. 380 158 169 2008 JMOBAK UK 0022-2836 0070 ? 18508083 10.1016/j.jmb.2008.04.048 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pesenti, M.E.' 1 ? primary 'Spinelli, S.' 2 ? primary 'Bezirard, V.' 3 ? primary 'Briand, L.' 4 ? primary 'Pernollet, J.C.' 5 ? primary 'Tegoni, M.' 6 ? primary 'Cambillau, C.' 7 ? 1 'Pesenti, M.E.' 8 ? 1 'Spinelli, S.' 9 ? 1 'Bezirard, V.' 10 ? 1 'Briand, L.' 11 ? 1 'Pernollet, J.C.' 12 ? 1 'Tegoni, M.' 13 ? 1 'Cambillau, C.' 14 ? # _cell.entry_id 3FE9 _cell.length_a 83.298 _cell.length_b 83.909 _cell.length_c 46.804 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FE9 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pheromone-binding protein ASP1' 13194.789 1 ? ? 'UNP residues 26-144' ? 2 non-polymer syn '(20S)-20-methyldotetracontane' 605.159 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 159 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APDWVPPEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQE RAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDVWFVI ; _entity_poly.pdbx_seq_one_letter_code_can ;APDWVPPEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQE RAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDVWFVI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 ASP n 1 4 TRP n 1 5 VAL n 1 6 PRO n 1 7 PRO n 1 8 GLU n 1 9 VAL n 1 10 PHE n 1 11 ASP n 1 12 LEU n 1 13 VAL n 1 14 ALA n 1 15 GLU n 1 16 ASP n 1 17 LYS n 1 18 ALA n 1 19 ARG n 1 20 CYS n 1 21 MET n 1 22 SER n 1 23 GLU n 1 24 HIS n 1 25 GLY n 1 26 THR n 1 27 THR n 1 28 GLN n 1 29 ALA n 1 30 GLN n 1 31 ILE n 1 32 ASP n 1 33 ASP n 1 34 VAL n 1 35 ASP n 1 36 LYS n 1 37 GLY n 1 38 ASN n 1 39 LEU n 1 40 VAL n 1 41 ASN n 1 42 GLU n 1 43 PRO n 1 44 SER n 1 45 ILE n 1 46 THR n 1 47 CYS n 1 48 TYR n 1 49 MET n 1 50 TYR n 1 51 CYS n 1 52 LEU n 1 53 LEU n 1 54 GLU n 1 55 ALA n 1 56 PHE n 1 57 SER n 1 58 LEU n 1 59 VAL n 1 60 ASP n 1 61 ASP n 1 62 GLU n 1 63 ALA n 1 64 ASN n 1 65 VAL n 1 66 ASP n 1 67 GLU n 1 68 ASP n 1 69 ILE n 1 70 MET n 1 71 LEU n 1 72 GLY n 1 73 LEU n 1 74 LEU n 1 75 PRO n 1 76 ASP n 1 77 GLN n 1 78 LEU n 1 79 GLN n 1 80 GLU n 1 81 ARG n 1 82 ALA n 1 83 GLN n 1 84 SER n 1 85 VAL n 1 86 MET n 1 87 GLY n 1 88 LYS n 1 89 CYS n 1 90 LEU n 1 91 PRO n 1 92 THR n 1 93 SER n 1 94 GLY n 1 95 SER n 1 96 ASP n 1 97 ASN n 1 98 CYS n 1 99 ASN n 1 100 LYS n 1 101 ILE n 1 102 TYR n 1 103 ASN n 1 104 LEU n 1 105 ALA n 1 106 LYS n 1 107 CYS n 1 108 VAL n 1 109 GLN n 1 110 GLU n 1 111 SER n 1 112 ALA n 1 113 PRO n 1 114 ASP n 1 115 VAL n 1 116 TRP n 1 117 PHE n 1 118 VAL n 1 119 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Honeybee _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Apis mellifera' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7460 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHIL-D2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9U9J6_APIME _struct_ref.pdbx_db_accession Q9U9J6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;APDWVPPEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQE RAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDVWFVI ; _struct_ref.pdbx_align_begin 26 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FE9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 119 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9U9J6 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 144 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 119 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CMJ non-polymer . '(20S)-20-methyldotetracontane' ? 'C43 H88' 605.159 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FE9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.10 _exptl_crystal.density_percent_sol 60.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '1.7M ammonium sulfate, 0.1M sodium citrate, pH5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2007-11-24 _diffrn_detector.details 'tiroidal mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 # _reflns.entry_id 3FE9 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 41.96 _reflns.d_resolution_high 1.75 _reflns.number_obs 16926 _reflns.number_all 16926 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rsym_value 0.087 _reflns.pdbx_netI_over_sigmaI 21.2 _reflns.B_iso_Wilson_estimate 21.99 _reflns.pdbx_redundancy 7.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.484 _reflns_shell.pdbx_Rsym_value 0.484 _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 8.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2441 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FE9 _refine.ls_number_reflns_obs 15916 _refine.ls_number_reflns_all 15916 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 99.89 _refine.ls_R_factor_obs 0.16238 _refine.ls_R_factor_all 0.16238 _refine.ls_R_factor_R_work 0.16084 _refine.ls_R_factor_R_free 0.18689 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.9 _refine.ls_number_reflns_R_free 992 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 11.954 _refine.aniso_B[1][1] 0.06 _refine.aniso_B[2][2] 0.09 _refine.aniso_B[3][3] -0.15 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2H8V' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.091 _refine.pdbx_overall_ESU_R_Free 0.089 _refine.overall_SU_ML 0.055 _refine.overall_SU_B 3.743 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3FE9 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.089 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 907 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 159 _refine_hist.number_atoms_total 1110 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 998 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 702 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.277 2.006 ? 1351 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.208 3.007 ? 1743 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.404 5.000 ? 122 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.404 27.174 ? 46 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.752 15.000 ? 169 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.020 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.083 0.200 ? 153 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1064 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 160 'X-RAY DIFFRACTION' ? r_mcbond_it 0.632 1.500 ? 599 'X-RAY DIFFRACTION' ? r_mcbond_other 0.194 1.500 ? 235 'X-RAY DIFFRACTION' ? r_mcangle_it 1.141 2.000 ? 981 'X-RAY DIFFRACTION' ? r_scbond_it 1.835 3.000 ? 399 'X-RAY DIFFRACTION' ? r_scangle_it 2.839 4.500 ? 367 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.750 _refine_ls_shell.d_res_low 1.795 _refine_ls_shell.number_reflns_R_work 1152 _refine_ls_shell.R_factor_R_work 0.189 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.206 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1152 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FE9 _struct.title 'Crystal structure of a pheromone binding protein from Apis mellifera with a serendipitous ligand soaked at pH 7.0' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FE9 _struct_keywords.pdbx_keywords 'Pheromone binding protein' _struct_keywords.text 'Pheromone binding protein, honey bee, Apis mellifera, signal transduction, queen mandibular protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 8 ? GLY A 25 ? GLU A 8 GLY A 25 1 ? 18 HELX_P HELX_P2 2 THR A 27 ? LYS A 36 ? THR A 27 LYS A 36 1 ? 10 HELX_P HELX_P3 3 GLU A 42 ? PHE A 56 ? GLU A 42 PHE A 56 1 ? 15 HELX_P HELX_P4 4 ASP A 66 ? LEU A 74 ? ASP A 66 LEU A 74 1 ? 9 HELX_P HELX_P5 5 PRO A 75 ? GLN A 77 ? PRO A 75 GLN A 77 5 ? 3 HELX_P HELX_P6 6 LEU A 78 ? LEU A 90 ? LEU A 78 LEU A 90 1 ? 13 HELX_P HELX_P7 7 ASP A 96 ? ALA A 112 ? ASP A 96 ALA A 112 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 20 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 20 A CYS 51 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 47 A CYS 98 1_555 ? ? ? ? ? ? ? 2.105 ? ? disulf3 disulf ? ? A CYS 89 SG ? ? ? 1_555 A CYS 107 SG ? ? A CYS 89 A CYS 107 1_555 ? ? ? ? ? ? ? 2.081 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 90 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 90 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 91 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 91 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.96 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CMJ 120 ? 8 'BINDING SITE FOR RESIDUE CMJ A 120' AC2 Software A CL 121 ? 3 'BINDING SITE FOR RESIDUE CL A 121' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LEU A 53 ? LEU A 53 . ? 1_555 ? 2 AC1 8 PHE A 56 ? PHE A 56 . ? 1_555 ? 3 AC1 8 MET A 70 ? MET A 70 . ? 1_555 ? 4 AC1 8 LEU A 73 ? LEU A 73 . ? 1_555 ? 5 AC1 8 MET A 86 ? MET A 86 . ? 1_555 ? 6 AC1 8 VAL A 115 ? VAL A 115 . ? 1_555 ? 7 AC1 8 TRP A 116 ? TRP A 116 . ? 1_555 ? 8 AC1 8 PHE A 117 ? PHE A 117 . ? 1_555 ? 9 AC2 3 VAL A 65 ? VAL A 65 . ? 1_555 ? 10 AC2 3 PRO A 91 ? PRO A 91 . ? 1_555 ? 11 AC2 3 THR A 92 ? THR A 92 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FE9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FE9 _atom_sites.fract_transf_matrix[1][1] 0.012005 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011918 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021366 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 TRP 4 4 4 TRP TRP A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 CYS 20 20 20 CYS CYS A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 TRP 116 116 116 TRP TRP A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ILE 119 119 119 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMJ 1 120 1 CMJ CME A . C 3 CL 1 121 1 CL CL A . D 4 HOH 1 122 3 HOH HOH A . D 4 HOH 2 123 123 HOH HOH A . D 4 HOH 3 124 4 HOH HOH A . D 4 HOH 4 125 125 HOH HOH A . D 4 HOH 5 126 126 HOH HOH A . D 4 HOH 6 127 127 HOH HOH A . D 4 HOH 7 128 5 HOH HOH A . D 4 HOH 8 129 7 HOH HOH A . D 4 HOH 9 130 8 HOH HOH A . D 4 HOH 10 131 9 HOH HOH A . D 4 HOH 11 132 132 HOH HOH A . D 4 HOH 12 133 133 HOH HOH A . D 4 HOH 13 134 10 HOH HOH A . D 4 HOH 14 135 11 HOH HOH A . D 4 HOH 15 136 12 HOH HOH A . D 4 HOH 16 137 137 HOH HOH A . D 4 HOH 17 138 138 HOH HOH A . D 4 HOH 18 139 13 HOH HOH A . D 4 HOH 19 140 14 HOH HOH A . D 4 HOH 20 141 15 HOH HOH A . D 4 HOH 21 142 16 HOH HOH A . D 4 HOH 22 143 17 HOH HOH A . D 4 HOH 23 144 18 HOH HOH A . D 4 HOH 24 145 19 HOH HOH A . D 4 HOH 25 146 20 HOH HOH A . D 4 HOH 26 147 147 HOH HOH A . D 4 HOH 27 148 148 HOH HOH A . D 4 HOH 28 149 149 HOH HOH A . D 4 HOH 29 150 21 HOH HOH A . D 4 HOH 30 151 22 HOH HOH A . D 4 HOH 31 152 152 HOH HOH A . D 4 HOH 32 153 153 HOH HOH A . D 4 HOH 33 154 154 HOH HOH A . D 4 HOH 34 155 23 HOH HOH A . D 4 HOH 35 156 24 HOH HOH A . D 4 HOH 36 157 25 HOH HOH A . D 4 HOH 37 158 27 HOH HOH A . D 4 HOH 38 159 30 HOH HOH A . D 4 HOH 39 160 33 HOH HOH A . D 4 HOH 40 161 161 HOH HOH A . D 4 HOH 41 162 34 HOH HOH A . D 4 HOH 42 163 35 HOH HOH A . D 4 HOH 43 164 41 HOH HOH A . D 4 HOH 44 165 165 HOH HOH A . D 4 HOH 45 166 42 HOH HOH A . D 4 HOH 46 167 47 HOH HOH A . D 4 HOH 47 168 168 HOH HOH A . D 4 HOH 48 169 48 HOH HOH A . D 4 HOH 49 170 49 HOH HOH A . D 4 HOH 50 171 50 HOH HOH A . D 4 HOH 51 172 51 HOH HOH A . D 4 HOH 52 173 52 HOH HOH A . D 4 HOH 53 174 53 HOH HOH A . D 4 HOH 54 175 54 HOH HOH A . D 4 HOH 55 176 56 HOH HOH A . D 4 HOH 56 177 177 HOH HOH A . D 4 HOH 57 178 57 HOH HOH A . D 4 HOH 58 179 58 HOH HOH A . D 4 HOH 59 180 59 HOH HOH A . D 4 HOH 60 181 63 HOH HOH A . D 4 HOH 61 182 182 HOH HOH A . D 4 HOH 62 183 64 HOH HOH A . D 4 HOH 63 184 65 HOH HOH A . D 4 HOH 64 185 66 HOH HOH A . D 4 HOH 65 186 67 HOH HOH A . D 4 HOH 66 187 68 HOH HOH A . D 4 HOH 67 188 188 HOH HOH A . D 4 HOH 68 189 69 HOH HOH A . D 4 HOH 69 190 190 HOH HOH A . D 4 HOH 70 191 70 HOH HOH A . D 4 HOH 71 192 72 HOH HOH A . D 4 HOH 72 193 193 HOH HOH A . D 4 HOH 73 194 194 HOH HOH A . D 4 HOH 74 195 75 HOH HOH A . D 4 HOH 75 196 196 HOH HOH A . D 4 HOH 76 197 76 HOH HOH A . D 4 HOH 77 198 78 HOH HOH A . D 4 HOH 78 199 199 HOH HOH A . D 4 HOH 79 200 80 HOH HOH A . D 4 HOH 80 201 83 HOH HOH A . D 4 HOH 81 202 87 HOH HOH A . D 4 HOH 82 203 89 HOH HOH A . D 4 HOH 83 204 90 HOH HOH A . D 4 HOH 84 205 205 HOH HOH A . D 4 HOH 85 206 91 HOH HOH A . D 4 HOH 86 207 100 HOH HOH A . D 4 HOH 87 208 101 HOH HOH A . D 4 HOH 88 209 102 HOH HOH A . D 4 HOH 89 210 105 HOH HOH A . D 4 HOH 90 211 211 HOH HOH A . D 4 HOH 91 212 106 HOH HOH A . D 4 HOH 92 213 112 HOH HOH A . D 4 HOH 93 214 114 HOH HOH A . D 4 HOH 94 215 116 HOH HOH A . D 4 HOH 95 216 118 HOH HOH A . D 4 HOH 96 218 218 HOH HOH A . D 4 HOH 97 219 219 HOH HOH A . D 4 HOH 98 225 225 HOH HOH A . D 4 HOH 99 226 226 HOH HOH A . D 4 HOH 100 230 230 HOH HOH A . D 4 HOH 101 231 231 HOH HOH A . D 4 HOH 102 233 233 HOH HOH A . D 4 HOH 103 288 288 HOH HOH A . D 4 HOH 104 294 294 HOH HOH A . D 4 HOH 105 295 295 HOH HOH A . D 4 HOH 106 296 296 HOH HOH A . D 4 HOH 107 297 297 HOH HOH A . D 4 HOH 108 298 298 HOH HOH A . D 4 HOH 109 299 299 HOH HOH A . D 4 HOH 110 300 300 HOH HOH A . D 4 HOH 111 303 303 HOH HOH A . D 4 HOH 112 304 304 HOH HOH A . D 4 HOH 113 305 305 HOH HOH A . D 4 HOH 114 306 306 HOH HOH A . D 4 HOH 115 309 309 HOH HOH A . D 4 HOH 116 314 314 HOH HOH A . D 4 HOH 117 315 315 HOH HOH A . D 4 HOH 118 316 316 HOH HOH A . D 4 HOH 119 317 317 HOH HOH A . D 4 HOH 120 318 318 HOH HOH A . D 4 HOH 121 321 321 HOH HOH A . D 4 HOH 122 324 324 HOH HOH A . D 4 HOH 123 328 328 HOH HOH A . D 4 HOH 124 332 332 HOH HOH A . D 4 HOH 125 333 333 HOH HOH A . D 4 HOH 126 353 353 HOH HOH A . D 4 HOH 127 356 356 HOH HOH A . D 4 HOH 128 357 357 HOH HOH A . D 4 HOH 129 358 358 HOH HOH A . D 4 HOH 130 359 359 HOH HOH A . D 4 HOH 131 360 360 HOH HOH A . D 4 HOH 132 362 362 HOH HOH A . D 4 HOH 133 363 363 HOH HOH A . D 4 HOH 134 364 364 HOH HOH A . D 4 HOH 135 365 365 HOH HOH A . D 4 HOH 136 366 366 HOH HOH A . D 4 HOH 137 370 370 HOH HOH A . D 4 HOH 138 371 371 HOH HOH A . D 4 HOH 139 373 373 HOH HOH A . D 4 HOH 140 375 375 HOH HOH A . D 4 HOH 141 378 378 HOH HOH A . D 4 HOH 142 388 388 HOH HOH A . D 4 HOH 143 395 395 HOH HOH A . D 4 HOH 144 397 397 HOH HOH A . D 4 HOH 145 398 398 HOH HOH A . D 4 HOH 146 404 404 HOH HOH A . D 4 HOH 147 405 405 HOH HOH A . D 4 HOH 148 406 406 HOH HOH A . D 4 HOH 149 407 407 HOH HOH A . D 4 HOH 150 408 408 HOH HOH A . D 4 HOH 151 410 410 HOH HOH A . D 4 HOH 152 411 411 HOH HOH A . D 4 HOH 153 412 412 HOH HOH A . D 4 HOH 154 413 413 HOH HOH A . D 4 HOH 155 414 414 HOH HOH A . D 4 HOH 156 415 415 HOH HOH A . D 4 HOH 157 416 416 HOH HOH A . D 4 HOH 158 418 418 HOH HOH A . D 4 HOH 159 419 419 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 122 ? D HOH . 2 1 A HOH 124 ? D HOH . 3 1 A HOH 300 ? D HOH . 4 1 A HOH 408 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 11.8068 11.7647 -4.1581 0.0437 0.0331 0.0795 -0.0151 0.0193 0.0126 1.5566 1.8156 2.5204 0.0262 0.8787 -0.4430 0.0321 0.0072 0.1930 -0.0016 -0.1313 -0.2048 -0.0394 0.2003 0.0992 'X-RAY DIFFRACTION' 2 ? refined 20.9982 17.0061 9.1103 0.2159 0.3287 0.2766 -0.1073 -0.0917 -0.0901 1.3265 1.3864 3.5064 1.0099 -0.0697 0.7866 -0.0383 0.0671 -0.2083 -0.0272 -0.1159 -0.4069 -0.2684 0.2903 0.1543 'X-RAY DIFFRACTION' 3 ? refined 8.1392 15.7192 4.9660 0.0869 0.0920 0.0972 -0.0126 -0.0391 -0.0739 3.7855 4.9999 3.8583 0.7506 1.5998 -1.7126 -0.2533 -0.5419 0.4221 0.2693 -0.0874 -0.2344 -0.2893 0.0229 0.3407 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 A 3 ? ? A 69 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 70 ? ? A 88 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 89 ? ? A 119 ? ? ? ? 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 REFMAC refinement 5.4.0077 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 REFMAC phasing 5.4.0077 ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A PRO 2 ? A PRO 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CMJ C2 C N N 75 CMJ C4 C N N 76 CMJ C5 C N N 77 CMJ C6 C N N 78 CMJ C43 C N N 79 CMJ C42 C N N 80 CMJ C41 C N N 81 CMJ C40 C N N 82 CMJ C39 C N N 83 CMJ C38 C N N 84 CMJ C37 C N N 85 CMJ C36 C N N 86 CMJ C35 C N N 87 CMJ C34 C N N 88 CMJ C33 C N N 89 CMJ C32 C N N 90 CMJ C31 C N N 91 CMJ C30 C N N 92 CMJ C29 C N N 93 CMJ C28 C N N 94 CMJ C27 C N N 95 CMJ C26 C N N 96 CMJ C25 C N N 97 CMJ C24 C N N 98 CMJ C23 C N N 99 CMJ C22 C N N 100 CMJ C20 C N N 101 CMJ C21 C N N 102 CMJ C19 C N N 103 CMJ C18 C N N 104 CMJ C17 C N N 105 CMJ C16 C N N 106 CMJ C15 C N N 107 CMJ C14 C N N 108 CMJ C13 C N N 109 CMJ C12 C N N 110 CMJ C11 C N N 111 CMJ C10 C N N 112 CMJ C9 C N N 113 CMJ C8 C N N 114 CMJ C7 C N N 115 CMJ C3 C N N 116 CMJ C1 C N N 117 CMJ H2 H N N 118 CMJ H2A H N N 119 CMJ H4 H N N 120 CMJ H4A H N N 121 CMJ H5 H N N 122 CMJ H5A H N N 123 CMJ H6 H N N 124 CMJ H6A H N N 125 CMJ H43 H N N 126 CMJ H43A H N N 127 CMJ H43B H N N 128 CMJ H42 H N N 129 CMJ H42A H N N 130 CMJ H41 H N N 131 CMJ H41A H N N 132 CMJ H40 H N N 133 CMJ H40A H N N 134 CMJ H39 H N N 135 CMJ H39A H N N 136 CMJ H38 H N N 137 CMJ H38A H N N 138 CMJ H37 H N N 139 CMJ H37A H N N 140 CMJ H36 H N N 141 CMJ H36A H N N 142 CMJ H35 H N N 143 CMJ H35A H N N 144 CMJ H34 H N N 145 CMJ H34A H N N 146 CMJ H33 H N N 147 CMJ H33A H N N 148 CMJ H32 H N N 149 CMJ H32A H N N 150 CMJ H31 H N N 151 CMJ H31A H N N 152 CMJ H30 H N N 153 CMJ H30A H N N 154 CMJ H29 H N N 155 CMJ H29A H N N 156 CMJ H28 H N N 157 CMJ H28A H N N 158 CMJ H27 H N N 159 CMJ H27A H N N 160 CMJ H26 H N N 161 CMJ H26A H N N 162 CMJ H25 H N N 163 CMJ H25A H N N 164 CMJ H24 H N N 165 CMJ H24A H N N 166 CMJ H23 H N N 167 CMJ H23A H N N 168 CMJ H22 H N N 169 CMJ H22A H N N 170 CMJ H20 H N N 171 CMJ H21 H N N 172 CMJ H21A H N N 173 CMJ H21B H N N 174 CMJ H19 H N N 175 CMJ H19A H N N 176 CMJ H18 H N N 177 CMJ H18A H N N 178 CMJ H17 H N N 179 CMJ H17A H N N 180 CMJ H16 H N N 181 CMJ H16A H N N 182 CMJ H15 H N N 183 CMJ H15A H N N 184 CMJ H14 H N N 185 CMJ H14A H N N 186 CMJ H13 H N N 187 CMJ H13A H N N 188 CMJ H12 H N N 189 CMJ H12A H N N 190 CMJ H11 H N N 191 CMJ H11A H N N 192 CMJ H10 H N N 193 CMJ H10A H N N 194 CMJ H9 H N N 195 CMJ H9A H N N 196 CMJ H8 H N N 197 CMJ H8A H N N 198 CMJ H7 H N N 199 CMJ H7A H N N 200 CMJ H3 H N N 201 CMJ H3A H N N 202 CMJ H1 H N N 203 CMJ H1A H N N 204 CMJ H1B H N N 205 CYS N N N N 206 CYS CA C N R 207 CYS C C N N 208 CYS O O N N 209 CYS CB C N N 210 CYS SG S N N 211 CYS OXT O N N 212 CYS H H N N 213 CYS H2 H N N 214 CYS HA H N N 215 CYS HB2 H N N 216 CYS HB3 H N N 217 CYS HG H N N 218 CYS HXT H N N 219 GLN N N N N 220 GLN CA C N S 221 GLN C C N N 222 GLN O O N N 223 GLN CB C N N 224 GLN CG C N N 225 GLN CD C N N 226 GLN OE1 O N N 227 GLN NE2 N N N 228 GLN OXT O N N 229 GLN H H N N 230 GLN H2 H N N 231 GLN HA H N N 232 GLN HB2 H N N 233 GLN HB3 H N N 234 GLN HG2 H N N 235 GLN HG3 H N N 236 GLN HE21 H N N 237 GLN HE22 H N N 238 GLN HXT H N N 239 GLU N N N N 240 GLU CA C N S 241 GLU C C N N 242 GLU O O N N 243 GLU CB C N N 244 GLU CG C N N 245 GLU CD C N N 246 GLU OE1 O N N 247 GLU OE2 O N N 248 GLU OXT O N N 249 GLU H H N N 250 GLU H2 H N N 251 GLU HA H N N 252 GLU HB2 H N N 253 GLU HB3 H N N 254 GLU HG2 H N N 255 GLU HG3 H N N 256 GLU HE2 H N N 257 GLU HXT H N N 258 GLY N N N N 259 GLY CA C N N 260 GLY C C N N 261 GLY O O N N 262 GLY OXT O N N 263 GLY H H N N 264 GLY H2 H N N 265 GLY HA2 H N N 266 GLY HA3 H N N 267 GLY HXT H N N 268 HIS N N N N 269 HIS CA C N S 270 HIS C C N N 271 HIS O O N N 272 HIS CB C N N 273 HIS CG C Y N 274 HIS ND1 N Y N 275 HIS CD2 C Y N 276 HIS CE1 C Y N 277 HIS NE2 N Y N 278 HIS OXT O N N 279 HIS H H N N 280 HIS H2 H N N 281 HIS HA H N N 282 HIS HB2 H N N 283 HIS HB3 H N N 284 HIS HD1 H N N 285 HIS HD2 H N N 286 HIS HE1 H N N 287 HIS HE2 H N N 288 HIS HXT H N N 289 HOH O O N N 290 HOH H1 H N N 291 HOH H2 H N N 292 ILE N N N N 293 ILE CA C N S 294 ILE C C N N 295 ILE O O N N 296 ILE CB C N S 297 ILE CG1 C N N 298 ILE CG2 C N N 299 ILE CD1 C N N 300 ILE OXT O N N 301 ILE H H N N 302 ILE H2 H N N 303 ILE HA H N N 304 ILE HB H N N 305 ILE HG12 H N N 306 ILE HG13 H N N 307 ILE HG21 H N N 308 ILE HG22 H N N 309 ILE HG23 H N N 310 ILE HD11 H N N 311 ILE HD12 H N N 312 ILE HD13 H N N 313 ILE HXT H N N 314 LEU N N N N 315 LEU CA C N S 316 LEU C C N N 317 LEU O O N N 318 LEU CB C N N 319 LEU CG C N N 320 LEU CD1 C N N 321 LEU CD2 C N N 322 LEU OXT O N N 323 LEU H H N N 324 LEU H2 H N N 325 LEU HA H N N 326 LEU HB2 H N N 327 LEU HB3 H N N 328 LEU HG H N N 329 LEU HD11 H N N 330 LEU HD12 H N N 331 LEU HD13 H N N 332 LEU HD21 H N N 333 LEU HD22 H N N 334 LEU HD23 H N N 335 LEU HXT H N N 336 LYS N N N N 337 LYS CA C N S 338 LYS C C N N 339 LYS O O N N 340 LYS CB C N N 341 LYS CG C N N 342 LYS CD C N N 343 LYS CE C N N 344 LYS NZ N N N 345 LYS OXT O N N 346 LYS H H N N 347 LYS H2 H N N 348 LYS HA H N N 349 LYS HB2 H N N 350 LYS HB3 H N N 351 LYS HG2 H N N 352 LYS HG3 H N N 353 LYS HD2 H N N 354 LYS HD3 H N N 355 LYS HE2 H N N 356 LYS HE3 H N N 357 LYS HZ1 H N N 358 LYS HZ2 H N N 359 LYS HZ3 H N N 360 LYS HXT H N N 361 MET N N N N 362 MET CA C N S 363 MET C C N N 364 MET O O N N 365 MET CB C N N 366 MET CG C N N 367 MET SD S N N 368 MET CE C N N 369 MET OXT O N N 370 MET H H N N 371 MET H2 H N N 372 MET HA H N N 373 MET HB2 H N N 374 MET HB3 H N N 375 MET HG2 H N N 376 MET HG3 H N N 377 MET HE1 H N N 378 MET HE2 H N N 379 MET HE3 H N N 380 MET HXT H N N 381 PHE N N N N 382 PHE CA C N S 383 PHE C C N N 384 PHE O O N N 385 PHE CB C N N 386 PHE CG C Y N 387 PHE CD1 C Y N 388 PHE CD2 C Y N 389 PHE CE1 C Y N 390 PHE CE2 C Y N 391 PHE CZ C Y N 392 PHE OXT O N N 393 PHE H H N N 394 PHE H2 H N N 395 PHE HA H N N 396 PHE HB2 H N N 397 PHE HB3 H N N 398 PHE HD1 H N N 399 PHE HD2 H N N 400 PHE HE1 H N N 401 PHE HE2 H N N 402 PHE HZ H N N 403 PHE HXT H N N 404 PRO N N N N 405 PRO CA C N S 406 PRO C C N N 407 PRO O O N N 408 PRO CB C N N 409 PRO CG C N N 410 PRO CD C N N 411 PRO OXT O N N 412 PRO H H N N 413 PRO HA H N N 414 PRO HB2 H N N 415 PRO HB3 H N N 416 PRO HG2 H N N 417 PRO HG3 H N N 418 PRO HD2 H N N 419 PRO HD3 H N N 420 PRO HXT H N N 421 SER N N N N 422 SER CA C N S 423 SER C C N N 424 SER O O N N 425 SER CB C N N 426 SER OG O N N 427 SER OXT O N N 428 SER H H N N 429 SER H2 H N N 430 SER HA H N N 431 SER HB2 H N N 432 SER HB3 H N N 433 SER HG H N N 434 SER HXT H N N 435 THR N N N N 436 THR CA C N S 437 THR C C N N 438 THR O O N N 439 THR CB C N R 440 THR OG1 O N N 441 THR CG2 C N N 442 THR OXT O N N 443 THR H H N N 444 THR H2 H N N 445 THR HA H N N 446 THR HB H N N 447 THR HG1 H N N 448 THR HG21 H N N 449 THR HG22 H N N 450 THR HG23 H N N 451 THR HXT H N N 452 TRP N N N N 453 TRP CA C N S 454 TRP C C N N 455 TRP O O N N 456 TRP CB C N N 457 TRP CG C Y N 458 TRP CD1 C Y N 459 TRP CD2 C Y N 460 TRP NE1 N Y N 461 TRP CE2 C Y N 462 TRP CE3 C Y N 463 TRP CZ2 C Y N 464 TRP CZ3 C Y N 465 TRP CH2 C Y N 466 TRP OXT O N N 467 TRP H H N N 468 TRP H2 H N N 469 TRP HA H N N 470 TRP HB2 H N N 471 TRP HB3 H N N 472 TRP HD1 H N N 473 TRP HE1 H N N 474 TRP HE3 H N N 475 TRP HZ2 H N N 476 TRP HZ3 H N N 477 TRP HH2 H N N 478 TRP HXT H N N 479 TYR N N N N 480 TYR CA C N S 481 TYR C C N N 482 TYR O O N N 483 TYR CB C N N 484 TYR CG C Y N 485 TYR CD1 C Y N 486 TYR CD2 C Y N 487 TYR CE1 C Y N 488 TYR CE2 C Y N 489 TYR CZ C Y N 490 TYR OH O N N 491 TYR OXT O N N 492 TYR H H N N 493 TYR H2 H N N 494 TYR HA H N N 495 TYR HB2 H N N 496 TYR HB3 H N N 497 TYR HD1 H N N 498 TYR HD2 H N N 499 TYR HE1 H N N 500 TYR HE2 H N N 501 TYR HH H N N 502 TYR HXT H N N 503 VAL N N N N 504 VAL CA C N S 505 VAL C C N N 506 VAL O O N N 507 VAL CB C N N 508 VAL CG1 C N N 509 VAL CG2 C N N 510 VAL OXT O N N 511 VAL H H N N 512 VAL H2 H N N 513 VAL HA H N N 514 VAL HB H N N 515 VAL HG11 H N N 516 VAL HG12 H N N 517 VAL HG13 H N N 518 VAL HG21 H N N 519 VAL HG22 H N N 520 VAL HG23 H N N 521 VAL HXT H N N 522 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CMJ C2 C3 sing N N 70 CMJ C2 C1 sing N N 71 CMJ C4 C5 sing N N 72 CMJ C4 C3 sing N N 73 CMJ C5 C6 sing N N 74 CMJ C6 C7 sing N N 75 CMJ C43 C42 sing N N 76 CMJ C42 C41 sing N N 77 CMJ C41 C40 sing N N 78 CMJ C40 C39 sing N N 79 CMJ C39 C38 sing N N 80 CMJ C38 C37 sing N N 81 CMJ C37 C36 sing N N 82 CMJ C36 C35 sing N N 83 CMJ C35 C34 sing N N 84 CMJ C34 C33 sing N N 85 CMJ C33 C32 sing N N 86 CMJ C32 C31 sing N N 87 CMJ C31 C30 sing N N 88 CMJ C30 C29 sing N N 89 CMJ C29 C28 sing N N 90 CMJ C28 C27 sing N N 91 CMJ C27 C26 sing N N 92 CMJ C26 C25 sing N N 93 CMJ C25 C24 sing N N 94 CMJ C24 C23 sing N N 95 CMJ C23 C22 sing N N 96 CMJ C22 C20 sing N N 97 CMJ C20 C21 sing N N 98 CMJ C20 C19 sing N N 99 CMJ C19 C18 sing N N 100 CMJ C18 C17 sing N N 101 CMJ C17 C16 sing N N 102 CMJ C16 C15 sing N N 103 CMJ C15 C14 sing N N 104 CMJ C14 C13 sing N N 105 CMJ C13 C12 sing N N 106 CMJ C12 C11 sing N N 107 CMJ C11 C10 sing N N 108 CMJ C10 C9 sing N N 109 CMJ C9 C8 sing N N 110 CMJ C8 C7 sing N N 111 CMJ C2 H2 sing N N 112 CMJ C2 H2A sing N N 113 CMJ C4 H4 sing N N 114 CMJ C4 H4A sing N N 115 CMJ C5 H5 sing N N 116 CMJ C5 H5A sing N N 117 CMJ C6 H6 sing N N 118 CMJ C6 H6A sing N N 119 CMJ C43 H43 sing N N 120 CMJ C43 H43A sing N N 121 CMJ C43 H43B sing N N 122 CMJ C42 H42 sing N N 123 CMJ C42 H42A sing N N 124 CMJ C41 H41 sing N N 125 CMJ C41 H41A sing N N 126 CMJ C40 H40 sing N N 127 CMJ C40 H40A sing N N 128 CMJ C39 H39 sing N N 129 CMJ C39 H39A sing N N 130 CMJ C38 H38 sing N N 131 CMJ C38 H38A sing N N 132 CMJ C37 H37 sing N N 133 CMJ C37 H37A sing N N 134 CMJ C36 H36 sing N N 135 CMJ C36 H36A sing N N 136 CMJ C35 H35 sing N N 137 CMJ C35 H35A sing N N 138 CMJ C34 H34 sing N N 139 CMJ C34 H34A sing N N 140 CMJ C33 H33 sing N N 141 CMJ C33 H33A sing N N 142 CMJ C32 H32 sing N N 143 CMJ C32 H32A sing N N 144 CMJ C31 H31 sing N N 145 CMJ C31 H31A sing N N 146 CMJ C30 H30 sing N N 147 CMJ C30 H30A sing N N 148 CMJ C29 H29 sing N N 149 CMJ C29 H29A sing N N 150 CMJ C28 H28 sing N N 151 CMJ C28 H28A sing N N 152 CMJ C27 H27 sing N N 153 CMJ C27 H27A sing N N 154 CMJ C26 H26 sing N N 155 CMJ C26 H26A sing N N 156 CMJ C25 H25 sing N N 157 CMJ C25 H25A sing N N 158 CMJ C24 H24 sing N N 159 CMJ C24 H24A sing N N 160 CMJ C23 H23 sing N N 161 CMJ C23 H23A sing N N 162 CMJ C22 H22 sing N N 163 CMJ C22 H22A sing N N 164 CMJ C20 H20 sing N N 165 CMJ C21 H21 sing N N 166 CMJ C21 H21A sing N N 167 CMJ C21 H21B sing N N 168 CMJ C19 H19 sing N N 169 CMJ C19 H19A sing N N 170 CMJ C18 H18 sing N N 171 CMJ C18 H18A sing N N 172 CMJ C17 H17 sing N N 173 CMJ C17 H17A sing N N 174 CMJ C16 H16 sing N N 175 CMJ C16 H16A sing N N 176 CMJ C15 H15 sing N N 177 CMJ C15 H15A sing N N 178 CMJ C14 H14 sing N N 179 CMJ C14 H14A sing N N 180 CMJ C13 H13 sing N N 181 CMJ C13 H13A sing N N 182 CMJ C12 H12 sing N N 183 CMJ C12 H12A sing N N 184 CMJ C11 H11 sing N N 185 CMJ C11 H11A sing N N 186 CMJ C10 H10 sing N N 187 CMJ C10 H10A sing N N 188 CMJ C9 H9 sing N N 189 CMJ C9 H9A sing N N 190 CMJ C8 H8 sing N N 191 CMJ C8 H8A sing N N 192 CMJ C7 H7 sing N N 193 CMJ C7 H7A sing N N 194 CMJ C3 H3 sing N N 195 CMJ C3 H3A sing N N 196 CMJ C1 H1 sing N N 197 CMJ C1 H1A sing N N 198 CMJ C1 H1B sing N N 199 CYS N CA sing N N 200 CYS N H sing N N 201 CYS N H2 sing N N 202 CYS CA C sing N N 203 CYS CA CB sing N N 204 CYS CA HA sing N N 205 CYS C O doub N N 206 CYS C OXT sing N N 207 CYS CB SG sing N N 208 CYS CB HB2 sing N N 209 CYS CB HB3 sing N N 210 CYS SG HG sing N N 211 CYS OXT HXT sing N N 212 GLN N CA sing N N 213 GLN N H sing N N 214 GLN N H2 sing N N 215 GLN CA C sing N N 216 GLN CA CB sing N N 217 GLN CA HA sing N N 218 GLN C O doub N N 219 GLN C OXT sing N N 220 GLN CB CG sing N N 221 GLN CB HB2 sing N N 222 GLN CB HB3 sing N N 223 GLN CG CD sing N N 224 GLN CG HG2 sing N N 225 GLN CG HG3 sing N N 226 GLN CD OE1 doub N N 227 GLN CD NE2 sing N N 228 GLN NE2 HE21 sing N N 229 GLN NE2 HE22 sing N N 230 GLN OXT HXT sing N N 231 GLU N CA sing N N 232 GLU N H sing N N 233 GLU N H2 sing N N 234 GLU CA C sing N N 235 GLU CA CB sing N N 236 GLU CA HA sing N N 237 GLU C O doub N N 238 GLU C OXT sing N N 239 GLU CB CG sing N N 240 GLU CB HB2 sing N N 241 GLU CB HB3 sing N N 242 GLU CG CD sing N N 243 GLU CG HG2 sing N N 244 GLU CG HG3 sing N N 245 GLU CD OE1 doub N N 246 GLU CD OE2 sing N N 247 GLU OE2 HE2 sing N N 248 GLU OXT HXT sing N N 249 GLY N CA sing N N 250 GLY N H sing N N 251 GLY N H2 sing N N 252 GLY CA C sing N N 253 GLY CA HA2 sing N N 254 GLY CA HA3 sing N N 255 GLY C O doub N N 256 GLY C OXT sing N N 257 GLY OXT HXT sing N N 258 HIS N CA sing N N 259 HIS N H sing N N 260 HIS N H2 sing N N 261 HIS CA C sing N N 262 HIS CA CB sing N N 263 HIS CA HA sing N N 264 HIS C O doub N N 265 HIS C OXT sing N N 266 HIS CB CG sing N N 267 HIS CB HB2 sing N N 268 HIS CB HB3 sing N N 269 HIS CG ND1 sing Y N 270 HIS CG CD2 doub Y N 271 HIS ND1 CE1 doub Y N 272 HIS ND1 HD1 sing N N 273 HIS CD2 NE2 sing Y N 274 HIS CD2 HD2 sing N N 275 HIS CE1 NE2 sing Y N 276 HIS CE1 HE1 sing N N 277 HIS NE2 HE2 sing N N 278 HIS OXT HXT sing N N 279 HOH O H1 sing N N 280 HOH O H2 sing N N 281 ILE N CA sing N N 282 ILE N H sing N N 283 ILE N H2 sing N N 284 ILE CA C sing N N 285 ILE CA CB sing N N 286 ILE CA HA sing N N 287 ILE C O doub N N 288 ILE C OXT sing N N 289 ILE CB CG1 sing N N 290 ILE CB CG2 sing N N 291 ILE CB HB sing N N 292 ILE CG1 CD1 sing N N 293 ILE CG1 HG12 sing N N 294 ILE CG1 HG13 sing N N 295 ILE CG2 HG21 sing N N 296 ILE CG2 HG22 sing N N 297 ILE CG2 HG23 sing N N 298 ILE CD1 HD11 sing N N 299 ILE CD1 HD12 sing N N 300 ILE CD1 HD13 sing N N 301 ILE OXT HXT sing N N 302 LEU N CA sing N N 303 LEU N H sing N N 304 LEU N H2 sing N N 305 LEU CA C sing N N 306 LEU CA CB sing N N 307 LEU CA HA sing N N 308 LEU C O doub N N 309 LEU C OXT sing N N 310 LEU CB CG sing N N 311 LEU CB HB2 sing N N 312 LEU CB HB3 sing N N 313 LEU CG CD1 sing N N 314 LEU CG CD2 sing N N 315 LEU CG HG sing N N 316 LEU CD1 HD11 sing N N 317 LEU CD1 HD12 sing N N 318 LEU CD1 HD13 sing N N 319 LEU CD2 HD21 sing N N 320 LEU CD2 HD22 sing N N 321 LEU CD2 HD23 sing N N 322 LEU OXT HXT sing N N 323 LYS N CA sing N N 324 LYS N H sing N N 325 LYS N H2 sing N N 326 LYS CA C sing N N 327 LYS CA CB sing N N 328 LYS CA HA sing N N 329 LYS C O doub N N 330 LYS C OXT sing N N 331 LYS CB CG sing N N 332 LYS CB HB2 sing N N 333 LYS CB HB3 sing N N 334 LYS CG CD sing N N 335 LYS CG HG2 sing N N 336 LYS CG HG3 sing N N 337 LYS CD CE sing N N 338 LYS CD HD2 sing N N 339 LYS CD HD3 sing N N 340 LYS CE NZ sing N N 341 LYS CE HE2 sing N N 342 LYS CE HE3 sing N N 343 LYS NZ HZ1 sing N N 344 LYS NZ HZ2 sing N N 345 LYS NZ HZ3 sing N N 346 LYS OXT HXT sing N N 347 MET N CA sing N N 348 MET N H sing N N 349 MET N H2 sing N N 350 MET CA C sing N N 351 MET CA CB sing N N 352 MET CA HA sing N N 353 MET C O doub N N 354 MET C OXT sing N N 355 MET CB CG sing N N 356 MET CB HB2 sing N N 357 MET CB HB3 sing N N 358 MET CG SD sing N N 359 MET CG HG2 sing N N 360 MET CG HG3 sing N N 361 MET SD CE sing N N 362 MET CE HE1 sing N N 363 MET CE HE2 sing N N 364 MET CE HE3 sing N N 365 MET OXT HXT sing N N 366 PHE N CA sing N N 367 PHE N H sing N N 368 PHE N H2 sing N N 369 PHE CA C sing N N 370 PHE CA CB sing N N 371 PHE CA HA sing N N 372 PHE C O doub N N 373 PHE C OXT sing N N 374 PHE CB CG sing N N 375 PHE CB HB2 sing N N 376 PHE CB HB3 sing N N 377 PHE CG CD1 doub Y N 378 PHE CG CD2 sing Y N 379 PHE CD1 CE1 sing Y N 380 PHE CD1 HD1 sing N N 381 PHE CD2 CE2 doub Y N 382 PHE CD2 HD2 sing N N 383 PHE CE1 CZ doub Y N 384 PHE CE1 HE1 sing N N 385 PHE CE2 CZ sing Y N 386 PHE CE2 HE2 sing N N 387 PHE CZ HZ sing N N 388 PHE OXT HXT sing N N 389 PRO N CA sing N N 390 PRO N CD sing N N 391 PRO N H sing N N 392 PRO CA C sing N N 393 PRO CA CB sing N N 394 PRO CA HA sing N N 395 PRO C O doub N N 396 PRO C OXT sing N N 397 PRO CB CG sing N N 398 PRO CB HB2 sing N N 399 PRO CB HB3 sing N N 400 PRO CG CD sing N N 401 PRO CG HG2 sing N N 402 PRO CG HG3 sing N N 403 PRO CD HD2 sing N N 404 PRO CD HD3 sing N N 405 PRO OXT HXT sing N N 406 SER N CA sing N N 407 SER N H sing N N 408 SER N H2 sing N N 409 SER CA C sing N N 410 SER CA CB sing N N 411 SER CA HA sing N N 412 SER C O doub N N 413 SER C OXT sing N N 414 SER CB OG sing N N 415 SER CB HB2 sing N N 416 SER CB HB3 sing N N 417 SER OG HG sing N N 418 SER OXT HXT sing N N 419 THR N CA sing N N 420 THR N H sing N N 421 THR N H2 sing N N 422 THR CA C sing N N 423 THR CA CB sing N N 424 THR CA HA sing N N 425 THR C O doub N N 426 THR C OXT sing N N 427 THR CB OG1 sing N N 428 THR CB CG2 sing N N 429 THR CB HB sing N N 430 THR OG1 HG1 sing N N 431 THR CG2 HG21 sing N N 432 THR CG2 HG22 sing N N 433 THR CG2 HG23 sing N N 434 THR OXT HXT sing N N 435 TRP N CA sing N N 436 TRP N H sing N N 437 TRP N H2 sing N N 438 TRP CA C sing N N 439 TRP CA CB sing N N 440 TRP CA HA sing N N 441 TRP C O doub N N 442 TRP C OXT sing N N 443 TRP CB CG sing N N 444 TRP CB HB2 sing N N 445 TRP CB HB3 sing N N 446 TRP CG CD1 doub Y N 447 TRP CG CD2 sing Y N 448 TRP CD1 NE1 sing Y N 449 TRP CD1 HD1 sing N N 450 TRP CD2 CE2 doub Y N 451 TRP CD2 CE3 sing Y N 452 TRP NE1 CE2 sing Y N 453 TRP NE1 HE1 sing N N 454 TRP CE2 CZ2 sing Y N 455 TRP CE3 CZ3 doub Y N 456 TRP CE3 HE3 sing N N 457 TRP CZ2 CH2 doub Y N 458 TRP CZ2 HZ2 sing N N 459 TRP CZ3 CH2 sing Y N 460 TRP CZ3 HZ3 sing N N 461 TRP CH2 HH2 sing N N 462 TRP OXT HXT sing N N 463 TYR N CA sing N N 464 TYR N H sing N N 465 TYR N H2 sing N N 466 TYR CA C sing N N 467 TYR CA CB sing N N 468 TYR CA HA sing N N 469 TYR C O doub N N 470 TYR C OXT sing N N 471 TYR CB CG sing N N 472 TYR CB HB2 sing N N 473 TYR CB HB3 sing N N 474 TYR CG CD1 doub Y N 475 TYR CG CD2 sing Y N 476 TYR CD1 CE1 sing Y N 477 TYR CD1 HD1 sing N N 478 TYR CD2 CE2 doub Y N 479 TYR CD2 HD2 sing N N 480 TYR CE1 CZ doub Y N 481 TYR CE1 HE1 sing N N 482 TYR CE2 CZ sing Y N 483 TYR CE2 HE2 sing N N 484 TYR CZ OH sing N N 485 TYR OH HH sing N N 486 TYR OXT HXT sing N N 487 VAL N CA sing N N 488 VAL N H sing N N 489 VAL N H2 sing N N 490 VAL CA C sing N N 491 VAL CA CB sing N N 492 VAL CA HA sing N N 493 VAL C O doub N N 494 VAL C OXT sing N N 495 VAL CB CG1 sing N N 496 VAL CB CG2 sing N N 497 VAL CB HB sing N N 498 VAL CG1 HG11 sing N N 499 VAL CG1 HG12 sing N N 500 VAL CG1 HG13 sing N N 501 VAL CG2 HG21 sing N N 502 VAL CG2 HG22 sing N N 503 VAL CG2 HG23 sing N N 504 VAL OXT HXT sing N N 505 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(20S)-20-methyldotetracontane' CMJ 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2H8V _pdbx_initial_refinement_model.details 'PDB ENTRY 2H8V' #