data_3FF2 # _entry.id 3FF2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FF2 pdb_00003ff2 10.2210/pdb3ff2/pdb RCSB RCSB050510 ? ? WWPDB D_1000050510 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391039 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3FF2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-12-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of uncharacterized cystatin fold protein (YP_497570.1) from NTF2 superfamily (YP_497570.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.90 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3FF2 _cell.length_a 47.860 _cell.length_b 47.860 _cell.length_c 160.023 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FF2 _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized cystatin fold protein (YP_497570.1) from NTF2 superfamily' 13087.878 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 water nat water 18.015 189 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SNLETAKA(MSE)IAAYNAQDVDTYVSY(MSE)TDDACEANYRGDVVREGKEGTRSGLAAAFARWPQNHAEIKD AQQVGTYVL(MSE)REHVTRGPATDGSPLVEPFDVVAVYSFEGDKCSRVEFIR ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSNLETAKAMIAAYNAQDVDTYVSYMTDDACEANYRGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQQVGTYVLMRE HVTRGPATDGSPLVEPFDVVAVYSFEGDKCSRVEFIR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 391039 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 ASN n 1 5 LEU n 1 6 GLU n 1 7 THR n 1 8 ALA n 1 9 LYS n 1 10 ALA n 1 11 MSE n 1 12 ILE n 1 13 ALA n 1 14 ALA n 1 15 TYR n 1 16 ASN n 1 17 ALA n 1 18 GLN n 1 19 ASP n 1 20 VAL n 1 21 ASP n 1 22 THR n 1 23 TYR n 1 24 VAL n 1 25 SER n 1 26 TYR n 1 27 MSE n 1 28 THR n 1 29 ASP n 1 30 ASP n 1 31 ALA n 1 32 CYS n 1 33 GLU n 1 34 ALA n 1 35 ASN n 1 36 TYR n 1 37 ARG n 1 38 GLY n 1 39 ASP n 1 40 VAL n 1 41 VAL n 1 42 ARG n 1 43 GLU n 1 44 GLY n 1 45 LYS n 1 46 GLU n 1 47 GLY n 1 48 THR n 1 49 ARG n 1 50 SER n 1 51 GLY n 1 52 LEU n 1 53 ALA n 1 54 ALA n 1 55 ALA n 1 56 PHE n 1 57 ALA n 1 58 ARG n 1 59 TRP n 1 60 PRO n 1 61 GLN n 1 62 ASN n 1 63 HIS n 1 64 ALA n 1 65 GLU n 1 66 ILE n 1 67 LYS n 1 68 ASP n 1 69 ALA n 1 70 GLN n 1 71 GLN n 1 72 VAL n 1 73 GLY n 1 74 THR n 1 75 TYR n 1 76 VAL n 1 77 LEU n 1 78 MSE n 1 79 ARG n 1 80 GLU n 1 81 HIS n 1 82 VAL n 1 83 THR n 1 84 ARG n 1 85 GLY n 1 86 PRO n 1 87 ALA n 1 88 THR n 1 89 ASP n 1 90 GLY n 1 91 SER n 1 92 PRO n 1 93 LEU n 1 94 VAL n 1 95 GLU n 1 96 PRO n 1 97 PHE n 1 98 ASP n 1 99 VAL n 1 100 VAL n 1 101 ALA n 1 102 VAL n 1 103 TYR n 1 104 SER n 1 105 PHE n 1 106 GLU n 1 107 GLY n 1 108 ASP n 1 109 LYS n 1 110 CYS n 1 111 SER n 1 112 ARG n 1 113 VAL n 1 114 GLU n 1 115 PHE n 1 116 ILE n 1 117 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Saro_2299, YP_497570.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Novosphingobium aromaticivorans DSM 12444' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 279238 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2G5Y7_NOVAD _struct_ref.pdbx_db_accession Q2G5Y7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSNLETAKAMIAAYNAQDVDTYVSYMTDDACEANYRGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQQVGTYVLMREH VTRGPATDGSPLVEPFDVVAVYSFEGDKCSRVEFIR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FF2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2G5Y7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 116 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 116 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3FF2 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q2G5Y7 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3FF2 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.50 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M NH4OAc, 30.0000% PEG-4000, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-11-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97870 1.0 3 0.97814 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97870,0.97814 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3FF2 _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 28.571 _reflns.number_obs 15445 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_netI_over_sigmaI 5.652 _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_redundancy 6.100 _reflns.percent_possible_obs 99.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 32.049 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.95 ? 6999 ? 0.585 1.3 0.585 ? 6.30 ? 1115 100.0 1 1 1.95 2.00 ? 6812 ? 0.523 1.4 0.523 ? 6.20 ? 1096 100.00 2 1 2.00 2.06 ? 6624 ? 0.415 1.8 0.415 ? 6.20 ? 1060 100.00 3 1 2.06 2.12 ? 6354 ? 0.387 1.9 0.387 ? 6.20 ? 1017 100.00 4 1 2.12 2.19 ? 6294 ? 0.287 2.5 0.287 ? 6.20 ? 1014 100.00 5 1 2.19 2.27 ? 6058 ? 0.261 2.8 0.261 ? 6.20 ? 977 99.90 6 1 2.27 2.36 ? 5740 ? 0.229 3.1 0.229 ? 6.20 ? 920 99.90 7 1 2.36 2.45 ? 5622 ? 0.192 3.6 0.192 ? 6.20 ? 908 99.80 8 1 2.45 2.56 ? 5397 ? 0.156 4.4 0.156 ? 6.20 ? 876 99.80 9 1 2.56 2.69 ? 5147 ? 0.118 5.7 0.118 ? 6.10 ? 839 99.70 10 1 2.69 2.83 ? 4960 ? 0.107 6.1 0.107 ? 6.20 ? 806 99.30 11 1 2.83 3.00 ? 4611 ? 0.091 7.1 0.091 ? 6.10 ? 751 99.60 12 1 3.00 3.21 ? 4380 ? 0.081 7.6 0.081 ? 6.10 ? 722 99.40 13 1 3.21 3.47 ? 4010 ? 0.073 8.3 0.073 ? 6.10 ? 655 98.70 14 1 3.47 3.80 ? 3765 ? 0.060 10.3 0.060 ? 6.10 ? 618 98.50 15 1 3.80 4.25 ? 3372 ? 0.056 10.4 0.056 ? 6.00 ? 559 98.10 16 1 4.25 4.91 ? 3035 ? 0.062 9.9 0.062 ? 6.00 ? 510 98.20 17 1 4.91 6.01 ? 2564 ? 0.061 9.6 0.061 ? 5.80 ? 441 97.90 18 1 6.01 8.50 ? 1925 ? 0.050 12.3 0.050 ? 5.60 ? 345 95.80 19 1 8.50 28.581 ? 1055 ? 0.037 16.8 0.037 ? 4.90 ? 216 93.30 20 1 # _refine.entry_id 3FF2 _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 28.571 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.120 _refine.ls_number_reflns_obs 15374 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. AN ACETATE (ACT) ION FROM CRYSTALLIZATION CONDITION IS MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_R_work 0.187 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.230 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 768 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 33.860 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.490 _refine.aniso_B[2][2] 0.490 _refine.aniso_B[3][3] -0.980 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.123 _refine.pdbx_overall_ESU_R_Free 0.125 _refine.overall_SU_ML 0.089 _refine.overall_SU_B 5.520 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 76.89 _refine.B_iso_min 20.76 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 904 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 189 _refine_hist.number_atoms_total 1097 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 28.571 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 970 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 640 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1321 1.512 1.944 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 1549 1.306 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 125 6.817 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 49 29.195 23.673 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 153 13.535 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 9 18.875 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 142 0.098 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1142 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 210 0.002 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 613 1.862 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 248 0.566 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 986 2.769 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 357 5.075 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 335 6.939 11.000 ? ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.820 _refine_ls_shell.number_reflns_R_work 1052 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.273 _refine_ls_shell.R_factor_R_free 0.381 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1109 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FF2 _struct.title ;Crystal structure of an uncharacterized cystatin fold protein (saro_2299) from novosphingobium aromaticivorans dsm at 1.90 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Ntf2 superfamily, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3FF2 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? ALA A 17 ? SER A 2 ALA A 16 1 ? 15 HELX_P HELX_P2 2 ASP A 19 ? SER A 25 ? ASP A 18 SER A 24 1 ? 7 HELX_P HELX_P3 3 GLU A 43 ? TRP A 59 ? GLU A 42 TRP A 58 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A SER 3 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale3 covale both ? A ALA 10 C ? ? ? 1_555 A MSE 11 N ? ? A ALA 9 A MSE 10 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale4 covale both ? A MSE 11 C ? ? ? 1_555 A ILE 12 N ? ? A MSE 10 A ILE 11 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A TYR 26 C ? ? ? 1_555 A MSE 27 N ? ? A TYR 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A MSE 27 C ? ? ? 1_555 A THR 28 N ? ? A MSE 26 A THR 27 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale7 covale both ? A LEU 77 C ? ? ? 1_555 A MSE 78 N ? ? A LEU 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? A MSE 78 C ? ? ? 1_555 A ARG 79 N ? ? A MSE 77 A ARG 78 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 40 ? ARG A 42 ? VAL A 39 ARG A 41 A 2 MSE A 27 ? ASN A 35 ? MSE A 26 ASN A 34 A 3 LYS A 109 ? ILE A 116 ? LYS A 108 ILE A 115 A 4 PHE A 97 ? GLU A 106 ? PHE A 96 GLU A 105 A 5 TYR A 75 ? THR A 83 ? TYR A 74 THR A 82 A 6 HIS A 63 ? VAL A 72 ? HIS A 62 VAL A 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 41 ? O VAL A 40 N GLU A 33 ? N GLU A 32 A 2 3 N ALA A 34 ? N ALA A 33 O VAL A 113 ? O VAL A 112 A 3 4 O ARG A 112 ? O ARG A 111 N SER A 104 ? N SER A 103 A 4 5 O TYR A 103 ? O TYR A 102 N VAL A 76 ? N VAL A 75 A 5 6 O ARG A 79 ? O ARG A 78 N LYS A 67 ? N LYS A 66 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ACT _struct_site.pdbx_auth_seq_id 117 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ACT A 117' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TYR A 15 ? TYR A 14 . ? 1_555 ? 2 AC1 4 LEU A 52 ? LEU A 51 . ? 1_555 ? 3 AC1 4 ALA A 55 ? ALA A 54 . ? 1_555 ? 4 AC1 4 ARG A 84 ? ARG A 83 . ? 1_555 ? # _atom_sites.entry_id 3FF2 _atom_sites.fract_transf_matrix[1][1] 0.020894 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020894 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006249 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 MSE 11 10 10 MSE MSE A . n A 1 12 ILE 12 11 11 ILE ILE A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 ASN 16 15 15 ASN ASN A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 THR 22 21 21 THR THR A . n A 1 23 TYR 23 22 22 TYR TYR A . n A 1 24 VAL 24 23 23 VAL VAL A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 TYR 26 25 25 TYR TYR A . n A 1 27 MSE 27 26 26 MSE MSE A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 CYS 32 31 31 CYS CYS A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ALA 34 33 33 ALA ALA A . n A 1 35 ASN 35 34 34 ASN ASN A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 THR 48 47 47 THR THR A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 ALA 54 53 53 ALA ALA A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 PHE 56 55 55 PHE PHE A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 TRP 59 58 58 TRP TRP A . n A 1 60 PRO 60 59 59 PRO PRO A . n A 1 61 GLN 61 60 60 GLN GLN A . n A 1 62 ASN 62 61 61 ASN ASN A . n A 1 63 HIS 63 62 62 HIS HIS A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 ILE 66 65 65 ILE ILE A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 TYR 75 74 74 TYR TYR A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 MSE 78 77 77 MSE MSE A . n A 1 79 ARG 79 78 78 ARG ARG A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 THR 83 82 82 THR THR A . n A 1 84 ARG 84 83 83 ARG ARG A . n A 1 85 GLY 85 84 84 GLY GLY A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 SER 91 90 90 SER SER A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 PRO 96 95 95 PRO PRO A . n A 1 97 PHE 97 96 96 PHE PHE A . n A 1 98 ASP 98 97 97 ASP ASP A . n A 1 99 VAL 99 98 98 VAL VAL A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 SER 104 103 103 SER SER A . n A 1 105 PHE 105 104 104 PHE PHE A . n A 1 106 GLU 106 105 105 GLU GLU A . n A 1 107 GLY 107 106 106 GLY GLY A . n A 1 108 ASP 108 107 107 ASP ASP A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 CYS 110 109 109 CYS CYS A . n A 1 111 SER 111 110 110 SER SER A . n A 1 112 ARG 112 111 111 ARG ARG A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 PHE 115 114 114 PHE PHE A . n A 1 116 ILE 116 115 115 ILE ILE A . n A 1 117 ARG 117 116 116 ARG ARG A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 117 1 ACT ACT A . C 3 HOH 1 118 118 HOH HOH A . C 3 HOH 2 119 119 HOH HOH A . C 3 HOH 3 120 120 HOH HOH A . C 3 HOH 4 121 121 HOH HOH A . C 3 HOH 5 122 122 HOH HOH A . C 3 HOH 6 123 123 HOH HOH A . C 3 HOH 7 124 124 HOH HOH A . C 3 HOH 8 125 125 HOH HOH A . C 3 HOH 9 126 126 HOH HOH A . C 3 HOH 10 127 127 HOH HOH A . C 3 HOH 11 128 128 HOH HOH A . C 3 HOH 12 129 129 HOH HOH A . C 3 HOH 13 130 130 HOH HOH A . C 3 HOH 14 131 131 HOH HOH A . C 3 HOH 15 132 132 HOH HOH A . C 3 HOH 16 133 133 HOH HOH A . C 3 HOH 17 134 134 HOH HOH A . C 3 HOH 18 135 135 HOH HOH A . C 3 HOH 19 136 136 HOH HOH A . C 3 HOH 20 137 137 HOH HOH A . C 3 HOH 21 138 138 HOH HOH A . C 3 HOH 22 139 139 HOH HOH A . C 3 HOH 23 140 140 HOH HOH A . C 3 HOH 24 141 141 HOH HOH A . C 3 HOH 25 142 142 HOH HOH A . C 3 HOH 26 143 143 HOH HOH A . C 3 HOH 27 144 144 HOH HOH A . C 3 HOH 28 145 145 HOH HOH A . C 3 HOH 29 146 146 HOH HOH A . C 3 HOH 30 147 147 HOH HOH A . C 3 HOH 31 148 148 HOH HOH A . C 3 HOH 32 149 149 HOH HOH A . C 3 HOH 33 150 150 HOH HOH A . C 3 HOH 34 151 151 HOH HOH A . C 3 HOH 35 152 152 HOH HOH A . C 3 HOH 36 153 153 HOH HOH A . C 3 HOH 37 154 154 HOH HOH A . C 3 HOH 38 155 155 HOH HOH A . C 3 HOH 39 156 156 HOH HOH A . C 3 HOH 40 157 157 HOH HOH A . C 3 HOH 41 158 158 HOH HOH A . C 3 HOH 42 159 159 HOH HOH A . C 3 HOH 43 160 160 HOH HOH A . C 3 HOH 44 161 161 HOH HOH A . C 3 HOH 45 162 162 HOH HOH A . C 3 HOH 46 163 163 HOH HOH A . C 3 HOH 47 164 164 HOH HOH A . C 3 HOH 48 165 165 HOH HOH A . C 3 HOH 49 166 166 HOH HOH A . C 3 HOH 50 167 167 HOH HOH A . C 3 HOH 51 168 168 HOH HOH A . C 3 HOH 52 169 169 HOH HOH A . C 3 HOH 53 170 170 HOH HOH A . C 3 HOH 54 171 171 HOH HOH A . C 3 HOH 55 172 172 HOH HOH A . C 3 HOH 56 173 173 HOH HOH A . C 3 HOH 57 174 174 HOH HOH A . C 3 HOH 58 175 175 HOH HOH A . C 3 HOH 59 176 176 HOH HOH A . C 3 HOH 60 177 177 HOH HOH A . C 3 HOH 61 178 178 HOH HOH A . C 3 HOH 62 179 179 HOH HOH A . C 3 HOH 63 180 180 HOH HOH A . C 3 HOH 64 181 181 HOH HOH A . C 3 HOH 65 182 182 HOH HOH A . C 3 HOH 66 183 183 HOH HOH A . C 3 HOH 67 184 184 HOH HOH A . C 3 HOH 68 185 185 HOH HOH A . C 3 HOH 69 186 186 HOH HOH A . C 3 HOH 70 187 187 HOH HOH A . C 3 HOH 71 188 188 HOH HOH A . C 3 HOH 72 189 189 HOH HOH A . C 3 HOH 73 190 190 HOH HOH A . C 3 HOH 74 191 2 HOH HOH A . C 3 HOH 75 192 3 HOH HOH A . C 3 HOH 76 193 4 HOH HOH A . C 3 HOH 77 194 5 HOH HOH A . C 3 HOH 78 195 6 HOH HOH A . C 3 HOH 79 196 7 HOH HOH A . C 3 HOH 80 197 8 HOH HOH A . C 3 HOH 81 198 9 HOH HOH A . C 3 HOH 82 199 10 HOH HOH A . C 3 HOH 83 200 11 HOH HOH A . C 3 HOH 84 201 12 HOH HOH A . C 3 HOH 85 202 13 HOH HOH A . C 3 HOH 86 203 14 HOH HOH A . C 3 HOH 87 204 15 HOH HOH A . C 3 HOH 88 205 16 HOH HOH A . C 3 HOH 89 206 17 HOH HOH A . C 3 HOH 90 207 18 HOH HOH A . C 3 HOH 91 208 19 HOH HOH A . C 3 HOH 92 209 20 HOH HOH A . C 3 HOH 93 210 21 HOH HOH A . C 3 HOH 94 211 22 HOH HOH A . C 3 HOH 95 212 23 HOH HOH A . C 3 HOH 96 213 24 HOH HOH A . C 3 HOH 97 214 25 HOH HOH A . C 3 HOH 98 215 26 HOH HOH A . C 3 HOH 99 216 27 HOH HOH A . C 3 HOH 100 217 28 HOH HOH A . C 3 HOH 101 218 29 HOH HOH A . C 3 HOH 102 219 30 HOH HOH A . C 3 HOH 103 220 31 HOH HOH A . C 3 HOH 104 221 32 HOH HOH A . C 3 HOH 105 222 33 HOH HOH A . C 3 HOH 106 223 34 HOH HOH A . C 3 HOH 107 224 35 HOH HOH A . C 3 HOH 108 225 36 HOH HOH A . C 3 HOH 109 226 37 HOH HOH A . C 3 HOH 110 227 38 HOH HOH A . C 3 HOH 111 228 39 HOH HOH A . C 3 HOH 112 229 40 HOH HOH A . C 3 HOH 113 230 41 HOH HOH A . C 3 HOH 114 231 42 HOH HOH A . C 3 HOH 115 232 43 HOH HOH A . C 3 HOH 116 233 44 HOH HOH A . C 3 HOH 117 234 45 HOH HOH A . C 3 HOH 118 235 46 HOH HOH A . C 3 HOH 119 236 47 HOH HOH A . C 3 HOH 120 237 48 HOH HOH A . C 3 HOH 121 238 49 HOH HOH A . C 3 HOH 122 239 50 HOH HOH A . C 3 HOH 123 240 51 HOH HOH A . C 3 HOH 124 241 52 HOH HOH A . C 3 HOH 125 242 53 HOH HOH A . C 3 HOH 126 243 54 HOH HOH A . C 3 HOH 127 244 55 HOH HOH A . C 3 HOH 128 245 56 HOH HOH A . C 3 HOH 129 246 57 HOH HOH A . C 3 HOH 130 247 58 HOH HOH A . C 3 HOH 131 248 59 HOH HOH A . C 3 HOH 132 249 60 HOH HOH A . C 3 HOH 133 250 61 HOH HOH A . C 3 HOH 134 251 62 HOH HOH A . C 3 HOH 135 252 63 HOH HOH A . C 3 HOH 136 253 64 HOH HOH A . C 3 HOH 137 254 65 HOH HOH A . C 3 HOH 138 255 66 HOH HOH A . C 3 HOH 139 256 67 HOH HOH A . C 3 HOH 140 257 68 HOH HOH A . C 3 HOH 141 258 69 HOH HOH A . C 3 HOH 142 259 70 HOH HOH A . C 3 HOH 143 260 71 HOH HOH A . C 3 HOH 144 261 72 HOH HOH A . C 3 HOH 145 262 73 HOH HOH A . C 3 HOH 146 263 74 HOH HOH A . C 3 HOH 147 264 75 HOH HOH A . C 3 HOH 148 265 76 HOH HOH A . C 3 HOH 149 266 77 HOH HOH A . C 3 HOH 150 267 78 HOH HOH A . C 3 HOH 151 268 79 HOH HOH A . C 3 HOH 152 269 80 HOH HOH A . C 3 HOH 153 270 81 HOH HOH A . C 3 HOH 154 271 82 HOH HOH A . C 3 HOH 155 272 83 HOH HOH A . C 3 HOH 156 273 84 HOH HOH A . C 3 HOH 157 274 85 HOH HOH A . C 3 HOH 158 275 86 HOH HOH A . C 3 HOH 159 276 87 HOH HOH A . C 3 HOH 160 277 88 HOH HOH A . C 3 HOH 161 278 89 HOH HOH A . C 3 HOH 162 279 90 HOH HOH A . C 3 HOH 163 280 91 HOH HOH A . C 3 HOH 164 281 92 HOH HOH A . C 3 HOH 165 282 93 HOH HOH A . C 3 HOH 166 283 94 HOH HOH A . C 3 HOH 167 284 95 HOH HOH A . C 3 HOH 168 285 96 HOH HOH A . C 3 HOH 169 286 97 HOH HOH A . C 3 HOH 170 287 98 HOH HOH A . C 3 HOH 171 288 99 HOH HOH A . C 3 HOH 172 289 100 HOH HOH A . C 3 HOH 173 290 101 HOH HOH A . C 3 HOH 174 291 102 HOH HOH A . C 3 HOH 175 292 103 HOH HOH A . C 3 HOH 176 293 104 HOH HOH A . C 3 HOH 177 294 105 HOH HOH A . C 3 HOH 178 295 106 HOH HOH A . C 3 HOH 179 296 107 HOH HOH A . C 3 HOH 180 297 108 HOH HOH A . C 3 HOH 181 298 109 HOH HOH A . C 3 HOH 182 299 110 HOH HOH A . C 3 HOH 183 300 111 HOH HOH A . C 3 HOH 184 301 112 HOH HOH A . C 3 HOH 185 302 113 HOH HOH A . C 3 HOH 186 303 114 HOH HOH A . C 3 HOH 187 304 115 HOH HOH A . C 3 HOH 188 305 116 HOH HOH A . C 3 HOH 189 306 117 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 11 A MSE 10 ? MET SELENOMETHIONINE 3 A MSE 27 A MSE 26 ? MET SELENOMETHIONINE 4 A MSE 78 A MSE 77 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2040 ? 1 MORE -6 ? 1 'SSA (A^2)' 10980 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 80.0115000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-11 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' reflns_shell 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_reflns_shell.percent_possible_all' 2 3 'Structure model' '_software.classification' 3 3 'Structure model' '_software.name' 4 4 'Structure model' '_software.classification' 5 4 'Structure model' '_software.contact_author' 6 4 'Structure model' '_software.contact_author_email' 7 4 'Structure model' '_software.language' 8 4 'Structure model' '_software.location' 9 4 'Structure model' '_software.name' 10 4 'Structure model' '_software.type' 11 4 'Structure model' '_software.version' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 5 'Structure model' '_database_2.pdbx_DOI' 14 5 'Structure model' '_database_2.pdbx_database_accession' 15 5 'Structure model' '_struct_ref_seq_dif.details' 16 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 1.3105 _pdbx_refine_tls.origin_y 6.6322 _pdbx_refine_tls.origin_z 27.5892 _pdbx_refine_tls.T[1][1] -0.0848 _pdbx_refine_tls.T[2][2] -0.0368 _pdbx_refine_tls.T[3][3] -0.0655 _pdbx_refine_tls.T[1][2] 0.0154 _pdbx_refine_tls.T[1][3] 0.0333 _pdbx_refine_tls.T[2][3] 0.0159 _pdbx_refine_tls.L[1][1] 1.3339 _pdbx_refine_tls.L[2][2] 1.4692 _pdbx_refine_tls.L[3][3] 2.1422 _pdbx_refine_tls.L[1][2] -0.1776 _pdbx_refine_tls.L[1][3] 0.1902 _pdbx_refine_tls.L[2][3] -0.4164 _pdbx_refine_tls.S[1][1] 0.0573 _pdbx_refine_tls.S[2][2] -0.0581 _pdbx_refine_tls.S[3][3] 0.0008 _pdbx_refine_tls.S[1][2] 0.0469 _pdbx_refine_tls.S[1][3] 0.0367 _pdbx_refine_tls.S[2][3] 0.0292 _pdbx_refine_tls.S[2][1] -0.0045 _pdbx_refine_tls.S[3][1] 0.0103 _pdbx_refine_tls.S[3][2] -0.0119 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 116 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0069 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3FF2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 109 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 109 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.712 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.100 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH #