data_3FIA # _entry.id 3FIA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FIA pdb_00003fia 10.2210/pdb3fia/pdb RCSB RCSB050625 ? ? WWPDB D_1000050625 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id HR3646e _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FIA _pdbx_database_status.recvd_initial_deposition_date 2008-12-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.M.' 1 'Chen, Y.' 2 'Seetharaman, J.' 3 'Devices, C.' 4 'Zhao, L.' 5 'Foote, E.L.' 6 'Ciccosanti, C.' 7 'Mao, L.' 8 'Xiao, R.' 9 'Acton, T.B.' 10 'Montelione, G.T.' 11 'Hunt, J.F.' 12 'Tong, L.' 13 'Northeast Structural Genomics Consortium (NESG)' 14 # _citation.id primary _citation.title 'Crystal structure of the EH 1 domain from human intersectin-1 protein.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vorobiev, S.M.' 1 ? primary 'Chen, Y.' 2 ? primary 'Seetharaman, J.' 3 ? primary 'Devices, C.' 4 ? primary 'Zhao, L.' 5 ? primary 'Foote, E.L.' 6 ? primary 'Ciccosanti, C.' 7 ? primary 'Mao, L.' 8 ? primary 'Xiao, R.' 9 ? primary 'Acton, T.B.' 10 ? primary 'Montelione, G.T.' 11 ? primary 'Hunt, J.F.' 12 ? primary 'Tong, L.' 13 ? # _cell.entry_id 3FIA _cell.length_a 94.848 _cell.length_b 32.021 _cell.length_c 33.287 _cell.angle_alpha 90.00 _cell.angle_beta 106.45 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FIA _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Intersectin-1 13816.960 1 ? 'M1V, I14T' 'residues 1-111' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SH3 domain-containing protein 1A, SH3P17' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GHHHHHHSHVAQFPTPFGGSLDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALAD (MSE)NNDGR(MSE)DQVEFSIA(MSE)KLIKLKLQGYQLPSALPPV(MSE)KQQPVAISS ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHVAQFPTPFGGSLDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNND GRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVAISS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier HR3646e # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 VAL n 1 12 ALA n 1 13 GLN n 1 14 PHE n 1 15 PRO n 1 16 THR n 1 17 PRO n 1 18 PHE n 1 19 GLY n 1 20 GLY n 1 21 SER n 1 22 LEU n 1 23 ASP n 1 24 THR n 1 25 TRP n 1 26 ALA n 1 27 ILE n 1 28 THR n 1 29 VAL n 1 30 GLU n 1 31 GLU n 1 32 ARG n 1 33 ALA n 1 34 LYS n 1 35 HIS n 1 36 ASP n 1 37 GLN n 1 38 GLN n 1 39 PHE n 1 40 HIS n 1 41 SER n 1 42 LEU n 1 43 LYS n 1 44 PRO n 1 45 ILE n 1 46 SER n 1 47 GLY n 1 48 PHE n 1 49 ILE n 1 50 THR n 1 51 GLY n 1 52 ASP n 1 53 GLN n 1 54 ALA n 1 55 ARG n 1 56 ASN n 1 57 PHE n 1 58 PHE n 1 59 PHE n 1 60 GLN n 1 61 SER n 1 62 GLY n 1 63 LEU n 1 64 PRO n 1 65 GLN n 1 66 PRO n 1 67 VAL n 1 68 LEU n 1 69 ALA n 1 70 GLN n 1 71 ILE n 1 72 TRP n 1 73 ALA n 1 74 LEU n 1 75 ALA n 1 76 ASP n 1 77 MSE n 1 78 ASN n 1 79 ASN n 1 80 ASP n 1 81 GLY n 1 82 ARG n 1 83 MSE n 1 84 ASP n 1 85 GLN n 1 86 VAL n 1 87 GLU n 1 88 PHE n 1 89 SER n 1 90 ILE n 1 91 ALA n 1 92 MSE n 1 93 LYS n 1 94 LEU n 1 95 ILE n 1 96 LYS n 1 97 LEU n 1 98 LYS n 1 99 LEU n 1 100 GLN n 1 101 GLY n 1 102 TYR n 1 103 GLN n 1 104 LEU n 1 105 PRO n 1 106 SER n 1 107 ALA n 1 108 LEU n 1 109 PRO n 1 110 PRO n 1 111 VAL n 1 112 MSE n 1 113 LYS n 1 114 GLN n 1 115 GLN n 1 116 PRO n 1 117 VAL n 1 118 ALA n 1 119 ILE n 1 120 SER n 1 121 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ITSN, ITSN1, SH3D1A' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) +Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 14-15c' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ITSN1_HUMAN _struct_ref.pdbx_db_accession Q15811 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAQFPTPFGGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSI AMKLIKLKLQGYQLPSALPPVMKQQPVAISS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FIA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 121 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15811 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 111 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FIA MSE A 1 ? UNP Q15811 ? ? 'expression tag' -9 1 1 3FIA GLY A 2 ? UNP Q15811 ? ? 'expression tag' -8 2 1 3FIA HIS A 3 ? UNP Q15811 ? ? 'expression tag' -7 3 1 3FIA HIS A 4 ? UNP Q15811 ? ? 'expression tag' -6 4 1 3FIA HIS A 5 ? UNP Q15811 ? ? 'expression tag' -5 5 1 3FIA HIS A 6 ? UNP Q15811 ? ? 'expression tag' -4 6 1 3FIA HIS A 7 ? UNP Q15811 ? ? 'expression tag' -3 7 1 3FIA HIS A 8 ? UNP Q15811 ? ? 'expression tag' -2 8 1 3FIA SER A 9 ? UNP Q15811 ? ? 'expression tag' -1 9 1 3FIA HIS A 10 ? UNP Q15811 ? ? 'expression tag' 0 10 1 3FIA VAL A 11 ? UNP Q15811 MET 1 'engineered mutation' 1 11 1 3FIA THR A 24 ? UNP Q15811 ILE 14 'engineered mutation' 14 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FIA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.75 _exptl_crystal.density_percent_sol 29.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'microbatch under oil' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '1.5M ammonium sulfate, 12% glycerol, 0.1M TrisHCl, pH 8.5, microbatch under oil , temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-12-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97869 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97869 # _reflns.entry_id 3FIA _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.45 _reflns.number_obs 31879 _reflns.number_all 33173 _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.75 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.222 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3311 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FIA _refine.ls_number_reflns_obs 16237 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.50 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 99.63 _refine.ls_R_factor_obs 0.16047 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15963 _refine.ls_R_factor_R_free 0.17643 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 866 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.B_iso_mean 17.003 _refine.aniso_B[1][1] -0.34 _refine.aniso_B[2][2] 0.44 _refine.aniso_B[3][3] -0.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.04 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.080 _refine.pdbx_overall_ESU_R_Free 0.062 _refine.overall_SU_ML 0.027 _refine.overall_SU_B 1.427 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 778 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 917 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 45.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.022 ? 804 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.831 1.963 ? 1091 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.142 5.000 ? 99 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.613 25.000 ? 36 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.597 15.000 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.558 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.065 0.200 ? 116 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.015 0.020 ? 616 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.237 0.200 ? 396 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.321 0.200 ? 581 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.152 0.200 ? 74 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.064 0.200 ? 6 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.183 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.194 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.699 1.500 ? 506 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.364 2.000 ? 799 'X-RAY DIFFRACTION' ? r_scbond_it 4.506 3.000 ? 315 'X-RAY DIFFRACTION' ? r_scangle_it 6.253 4.500 ? 292 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.895 3.000 ? 821 'X-RAY DIFFRACTION' ? r_sphericity_free 10.275 3.000 ? 134 'X-RAY DIFFRACTION' ? r_sphericity_bonded 6.239 3.000 ? 784 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.451 _refine_ls_shell.d_res_low 1.489 _refine_ls_shell.number_reflns_R_work 1155 _refine_ls_shell.R_factor_R_work 0.139 _refine_ls_shell.percent_reflns_obs 97.75 _refine_ls_shell.R_factor_R_free 0.202 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FIA _struct.title 'Crystal structure of the EH 1 domain from human intersectin-1 protein. Northeast Structural Genomics Consortium target HR3646e.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FIA _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;Intersectin-1; EH 1 domain; NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Alternative splicing, Calcium, Cell junction, Cell projection, Coiled coil, Endocytosis, Membrane, Phosphoprotein, SH3 domain, Synapse, Synaptosome, PROTEIN BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'monomer according to aggregation screening' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? LEU A 42 ? THR A 18 LEU A 32 1 ? 15 HELX_P HELX_P2 2 GLY A 51 ? PHE A 59 ? GLY A 41 PHE A 49 1 ? 9 HELX_P HELX_P3 3 GLN A 60 ? GLY A 62 ? GLN A 50 GLY A 52 5 ? 3 HELX_P HELX_P4 4 PRO A 64 ? ASP A 76 ? PRO A 54 ASP A 66 1 ? 13 HELX_P HELX_P5 5 ASP A 84 ? GLN A 100 ? ASP A 74 GLN A 90 1 ? 17 HELX_P HELX_P6 6 PRO A 109 ? LYS A 113 ? PRO A 99 LYS A 103 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 76 C ? ? ? 1_555 A MSE 77 N ? ? A ASP 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A MSE 77 C ? ? ? 1_555 A ASN 78 N ? ? A MSE 67 A ASN 68 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A ARG 82 C ? ? ? 1_555 A MSE 83 N ? ? A ARG 72 A MSE 73 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? A MSE 83 C ? ? ? 1_555 A ASP 84 N ? ? A MSE 73 A ASP 74 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A ALA 91 C ? ? ? 1_555 A MSE 92 N ? ? A ALA 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A MSE 92 C ? ? ? 1_555 A LYS 93 N ? ? A MSE 82 A LYS 83 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? A VAL 111 C ? ? ? 1_555 A MSE 112 N ? ? A VAL 101 A MSE 102 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A MSE 112 C ? ? ? 1_555 A LYS 113 N ? ? A MSE 102 A LYS 103 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? A ASP 76 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 66 A CA 201 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc2 metalc ? ? A ASN 78 OD1 ? ? ? 1_555 B CA . CA ? ? A ASN 68 A CA 201 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc3 metalc ? ? A ASP 80 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 70 A CA 201 1_555 ? ? ? ? ? ? ? 2.380 ? ? metalc4 metalc ? ? A ARG 82 O ? ? ? 1_555 B CA . CA ? ? A ARG 72 A CA 201 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc5 metalc ? ? A GLU 87 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 77 A CA 201 1_555 ? ? ? ? ? ? ? 2.409 ? ? metalc6 metalc ? ? A GLU 87 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 77 A CA 201 1_555 ? ? ? ? ? ? ? 2.500 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 403 1_555 ? ? ? ? ? ? ? 2.406 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 49 ? THR A 50 ? ILE A 39 THR A 40 A 2 ARG A 82 ? MSE A 83 ? ARG A 72 MSE A 73 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 49 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 39 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id MSE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 83 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id MSE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 73 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 201 ? 6 'BINDING SITE FOR RESIDUE CA A 201' AC2 Software A SO4 301 ? 8 'BINDING SITE FOR RESIDUE SO4 A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 76 ? ASP A 66 . ? 1_555 ? 2 AC1 6 ASN A 78 ? ASN A 68 . ? 1_555 ? 3 AC1 6 ASP A 80 ? ASP A 70 . ? 1_555 ? 4 AC1 6 ARG A 82 ? ARG A 72 . ? 1_555 ? 5 AC1 6 GLU A 87 ? GLU A 77 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 403 . ? 1_555 ? 7 AC2 8 GLU A 31 ? GLU A 21 . ? 1_555 ? 8 AC2 8 LYS A 96 ? LYS A 86 . ? 1_555 ? 9 AC2 8 GLN A 100 ? GLN A 90 . ? 1_555 ? 10 AC2 8 PRO A 105 ? PRO A 95 . ? 4_556 ? 11 AC2 8 SER A 106 ? SER A 96 . ? 4_556 ? 12 AC2 8 HOH D . ? HOH A 465 . ? 1_555 ? 13 AC2 8 HOH D . ? HOH A 485 . ? 4_556 ? 14 AC2 8 HOH D . ? HOH A 503 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FIA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FIA _atom_sites.fract_transf_matrix[1][1] 0.010543 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003113 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031230 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031324 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -9 ? ? ? A . n A 1 2 GLY 2 -8 ? ? ? A . n A 1 3 HIS 3 -7 ? ? ? A . n A 1 4 HIS 4 -6 ? ? ? A . n A 1 5 HIS 5 -5 ? ? ? A . n A 1 6 HIS 6 -4 ? ? ? A . n A 1 7 HIS 7 -3 ? ? ? A . n A 1 8 HIS 8 -2 ? ? ? A . n A 1 9 SER 9 -1 ? ? ? A . n A 1 10 HIS 10 0 ? ? ? A . n A 1 11 VAL 11 1 ? ? ? A . n A 1 12 ALA 12 2 ? ? ? A . n A 1 13 GLN 13 3 ? ? ? A . n A 1 14 PHE 14 4 ? ? ? A . n A 1 15 PRO 15 5 ? ? ? A . n A 1 16 THR 16 6 6 THR ALA A . n A 1 17 PRO 17 7 7 PRO PRO A . n A 1 18 PHE 18 8 8 PHE PHE A . n A 1 19 GLY 19 9 9 GLY GLY A . n A 1 20 GLY 20 10 10 GLY GLY A . n A 1 21 SER 21 11 11 SER SER A . n A 1 22 LEU 22 12 12 LEU LEU A . n A 1 23 ASP 23 13 13 ASP ASP A . n A 1 24 THR 24 14 14 THR THR A . n A 1 25 TRP 25 15 15 TRP TRP A . n A 1 26 ALA 26 16 16 ALA ALA A . n A 1 27 ILE 27 17 17 ILE ILE A . n A 1 28 THR 28 18 18 THR THR A . n A 1 29 VAL 29 19 19 VAL VAL A . n A 1 30 GLU 30 20 20 GLU GLU A . n A 1 31 GLU 31 21 21 GLU GLU A . n A 1 32 ARG 32 22 22 ARG ARG A . n A 1 33 ALA 33 23 23 ALA ALA A . n A 1 34 LYS 34 24 24 LYS LYS A . n A 1 35 HIS 35 25 25 HIS HIS A . n A 1 36 ASP 36 26 26 ASP ASP A . n A 1 37 GLN 37 27 27 GLN GLN A . n A 1 38 GLN 38 28 28 GLN GLN A . n A 1 39 PHE 39 29 29 PHE PHE A . n A 1 40 HIS 40 30 30 HIS HIS A . n A 1 41 SER 41 31 31 SER SER A . n A 1 42 LEU 42 32 32 LEU LEU A . n A 1 43 LYS 43 33 33 LYS LYS A . n A 1 44 PRO 44 34 34 PRO PRO A . n A 1 45 ILE 45 35 35 ILE ILE A . n A 1 46 SER 46 36 36 SER SER A . n A 1 47 GLY 47 37 37 GLY GLY A . n A 1 48 PHE 48 38 38 PHE PHE A . n A 1 49 ILE 49 39 39 ILE ILE A . n A 1 50 THR 50 40 40 THR THR A . n A 1 51 GLY 51 41 41 GLY GLY A . n A 1 52 ASP 52 42 42 ASP ASP A . n A 1 53 GLN 53 43 43 GLN GLN A . n A 1 54 ALA 54 44 44 ALA ALA A . n A 1 55 ARG 55 45 45 ARG ARG A . n A 1 56 ASN 56 46 46 ASN ASN A . n A 1 57 PHE 57 47 47 PHE PHE A . n A 1 58 PHE 58 48 48 PHE PHE A . n A 1 59 PHE 59 49 49 PHE PHE A . n A 1 60 GLN 60 50 50 GLN GLN A . n A 1 61 SER 61 51 51 SER SER A . n A 1 62 GLY 62 52 52 GLY GLY A . n A 1 63 LEU 63 53 53 LEU LEU A . n A 1 64 PRO 64 54 54 PRO PRO A . n A 1 65 GLN 65 55 55 GLN GLN A . n A 1 66 PRO 66 56 56 PRO PRO A . n A 1 67 VAL 67 57 57 VAL VAL A . n A 1 68 LEU 68 58 58 LEU LEU A . n A 1 69 ALA 69 59 59 ALA ALA A . n A 1 70 GLN 70 60 60 GLN GLN A . n A 1 71 ILE 71 61 61 ILE ILE A . n A 1 72 TRP 72 62 62 TRP TRP A . n A 1 73 ALA 73 63 63 ALA ALA A . n A 1 74 LEU 74 64 64 LEU LEU A . n A 1 75 ALA 75 65 65 ALA ALA A . n A 1 76 ASP 76 66 66 ASP ASP A . n A 1 77 MSE 77 67 67 MSE MSE A . n A 1 78 ASN 78 68 68 ASN ASN A . n A 1 79 ASN 79 69 69 ASN ASN A . n A 1 80 ASP 80 70 70 ASP ASP A . n A 1 81 GLY 81 71 71 GLY GLY A . n A 1 82 ARG 82 72 72 ARG ARG A . n A 1 83 MSE 83 73 73 MSE MSE A . n A 1 84 ASP 84 74 74 ASP ASP A . n A 1 85 GLN 85 75 75 GLN GLN A . n A 1 86 VAL 86 76 76 VAL VAL A . n A 1 87 GLU 87 77 77 GLU GLU A . n A 1 88 PHE 88 78 78 PHE PHE A . n A 1 89 SER 89 79 79 SER SER A . n A 1 90 ILE 90 80 80 ILE ILE A . n A 1 91 ALA 91 81 81 ALA ALA A . n A 1 92 MSE 92 82 82 MSE MSE A . n A 1 93 LYS 93 83 83 LYS LYS A . n A 1 94 LEU 94 84 84 LEU LEU A . n A 1 95 ILE 95 85 85 ILE ILE A . n A 1 96 LYS 96 86 86 LYS LYS A . n A 1 97 LEU 97 87 87 LEU LEU A . n A 1 98 LYS 98 88 88 LYS LYS A . n A 1 99 LEU 99 89 89 LEU LEU A . n A 1 100 GLN 100 90 90 GLN GLN A . n A 1 101 GLY 101 91 91 GLY GLY A . n A 1 102 TYR 102 92 92 TYR TYR A . n A 1 103 GLN 103 93 93 GLN GLN A . n A 1 104 LEU 104 94 94 LEU LEU A . n A 1 105 PRO 105 95 95 PRO PRO A . n A 1 106 SER 106 96 96 SER SER A . n A 1 107 ALA 107 97 97 ALA ALA A . n A 1 108 LEU 108 98 98 LEU LEU A . n A 1 109 PRO 109 99 99 PRO PRO A . n A 1 110 PRO 110 100 100 PRO PRO A . n A 1 111 VAL 111 101 101 VAL VAL A . n A 1 112 MSE 112 102 102 MSE MSE A . n A 1 113 LYS 113 103 103 LYS LYS A . n A 1 114 GLN 114 104 ? ? ? A . n A 1 115 GLN 115 105 ? ? ? A . n A 1 116 PRO 116 106 ? ? ? A . n A 1 117 VAL 117 107 ? ? ? A . n A 1 118 ALA 118 108 ? ? ? A . n A 1 119 ILE 119 109 ? ? ? A . n A 1 120 SER 120 110 ? ? ? A . n A 1 121 SER 121 111 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 201 201 CA CA A . C 3 SO4 1 301 301 SO4 SO4 A . D 4 HOH 1 401 401 HOH HOH A . D 4 HOH 2 402 402 HOH HOH A . D 4 HOH 3 403 403 HOH HOH A . D 4 HOH 4 404 404 HOH HOH A . D 4 HOH 5 405 405 HOH HOH A . D 4 HOH 6 406 406 HOH HOH A . D 4 HOH 7 407 407 HOH HOH A . D 4 HOH 8 408 408 HOH HOH A . D 4 HOH 9 409 409 HOH HOH A . D 4 HOH 10 410 410 HOH HOH A . D 4 HOH 11 411 411 HOH HOH A . D 4 HOH 12 412 412 HOH HOH A . D 4 HOH 13 413 413 HOH HOH A . D 4 HOH 14 414 414 HOH HOH A . D 4 HOH 15 415 415 HOH HOH A . D 4 HOH 16 416 416 HOH HOH A . D 4 HOH 17 417 417 HOH HOH A . D 4 HOH 18 418 418 HOH HOH A . D 4 HOH 19 419 419 HOH HOH A . D 4 HOH 20 420 420 HOH HOH A . D 4 HOH 21 421 421 HOH HOH A . D 4 HOH 22 422 422 HOH HOH A . D 4 HOH 23 423 423 HOH HOH A . D 4 HOH 24 424 424 HOH HOH A . D 4 HOH 25 425 425 HOH HOH A . D 4 HOH 26 426 426 HOH HOH A . D 4 HOH 27 427 427 HOH HOH A . D 4 HOH 28 428 428 HOH HOH A . D 4 HOH 29 429 429 HOH HOH A . D 4 HOH 30 430 430 HOH HOH A . D 4 HOH 31 431 431 HOH HOH A . D 4 HOH 32 432 432 HOH HOH A . D 4 HOH 33 433 433 HOH HOH A . D 4 HOH 34 434 434 HOH HOH A . D 4 HOH 35 435 435 HOH HOH A . D 4 HOH 36 436 436 HOH HOH A . D 4 HOH 37 437 437 HOH HOH A . D 4 HOH 38 438 438 HOH HOH A . D 4 HOH 39 439 439 HOH HOH A . D 4 HOH 40 440 440 HOH HOH A . D 4 HOH 41 441 441 HOH HOH A . D 4 HOH 42 442 442 HOH HOH A . D 4 HOH 43 443 443 HOH HOH A . D 4 HOH 44 444 444 HOH HOH A . D 4 HOH 45 445 445 HOH HOH A . D 4 HOH 46 446 446 HOH HOH A . D 4 HOH 47 447 447 HOH HOH A . D 4 HOH 48 448 448 HOH HOH A . D 4 HOH 49 449 449 HOH HOH A . D 4 HOH 50 450 450 HOH HOH A . D 4 HOH 51 451 451 HOH HOH A . D 4 HOH 52 452 452 HOH HOH A . D 4 HOH 53 453 453 HOH HOH A . D 4 HOH 54 454 454 HOH HOH A . D 4 HOH 55 455 455 HOH HOH A . D 4 HOH 56 456 456 HOH HOH A . D 4 HOH 57 457 457 HOH HOH A . D 4 HOH 58 458 458 HOH HOH A . D 4 HOH 59 459 459 HOH HOH A . D 4 HOH 60 460 460 HOH HOH A . D 4 HOH 61 461 461 HOH HOH A . D 4 HOH 62 462 462 HOH HOH A . D 4 HOH 63 463 463 HOH HOH A . D 4 HOH 64 464 464 HOH HOH A . D 4 HOH 65 465 465 HOH HOH A . D 4 HOH 66 466 466 HOH HOH A . D 4 HOH 67 467 467 HOH HOH A . D 4 HOH 68 468 468 HOH HOH A . D 4 HOH 69 469 469 HOH HOH A . D 4 HOH 70 470 470 HOH HOH A . D 4 HOH 71 471 471 HOH HOH A . D 4 HOH 72 472 472 HOH HOH A . D 4 HOH 73 473 473 HOH HOH A . D 4 HOH 74 474 474 HOH HOH A . D 4 HOH 75 475 475 HOH HOH A . D 4 HOH 76 476 476 HOH HOH A . D 4 HOH 77 477 477 HOH HOH A . D 4 HOH 78 478 478 HOH HOH A . D 4 HOH 79 479 479 HOH HOH A . D 4 HOH 80 480 480 HOH HOH A . D 4 HOH 81 481 481 HOH HOH A . D 4 HOH 82 482 482 HOH HOH A . D 4 HOH 83 483 483 HOH HOH A . D 4 HOH 84 484 484 HOH HOH A . D 4 HOH 85 485 485 HOH HOH A . D 4 HOH 86 486 486 HOH HOH A . D 4 HOH 87 487 487 HOH HOH A . D 4 HOH 88 488 488 HOH HOH A . D 4 HOH 89 489 489 HOH HOH A . D 4 HOH 90 490 490 HOH HOH A . D 4 HOH 91 491 491 HOH HOH A . D 4 HOH 92 492 492 HOH HOH A . D 4 HOH 93 493 493 HOH HOH A . D 4 HOH 94 494 494 HOH HOH A . D 4 HOH 95 495 495 HOH HOH A . D 4 HOH 96 497 497 HOH HOH A . D 4 HOH 97 498 498 HOH HOH A . D 4 HOH 98 499 499 HOH HOH A . D 4 HOH 99 500 500 HOH HOH A . D 4 HOH 100 501 501 HOH HOH A . D 4 HOH 101 502 502 HOH HOH A . D 4 HOH 102 503 503 HOH HOH A . D 4 HOH 103 504 504 HOH HOH A . D 4 HOH 104 505 505 HOH HOH A . D 4 HOH 105 506 506 HOH HOH A . D 4 HOH 106 507 507 HOH HOH A . D 4 HOH 107 508 508 HOH HOH A . D 4 HOH 108 510 510 HOH HOH A . D 4 HOH 109 511 511 HOH HOH A . D 4 HOH 110 513 513 HOH HOH A . D 4 HOH 111 514 514 HOH HOH A . D 4 HOH 112 516 516 HOH HOH A . D 4 HOH 113 517 517 HOH HOH A . D 4 HOH 114 518 518 HOH HOH A . D 4 HOH 115 519 519 HOH HOH A . D 4 HOH 116 520 520 HOH HOH A . D 4 HOH 117 521 521 HOH HOH A . D 4 HOH 118 522 522 HOH HOH A . D 4 HOH 119 524 524 HOH HOH A . D 4 HOH 120 525 525 HOH HOH A . D 4 HOH 121 528 528 HOH HOH A . D 4 HOH 122 529 529 HOH HOH A . D 4 HOH 123 530 530 HOH HOH A . D 4 HOH 124 531 531 HOH HOH A . D 4 HOH 125 532 532 HOH HOH A . D 4 HOH 126 533 533 HOH HOH A . D 4 HOH 127 534 534 HOH HOH A . D 4 HOH 128 535 535 HOH HOH A . D 4 HOH 129 536 536 HOH HOH A . D 4 HOH 130 537 537 HOH HOH A . D 4 HOH 131 538 538 HOH HOH A . D 4 HOH 132 539 539 HOH HOH A . D 4 HOH 133 540 540 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 77 A MSE 67 ? MET SELENOMETHIONINE 2 A MSE 83 A MSE 73 ? MET SELENOMETHIONINE 3 A MSE 92 A MSE 82 ? MET SELENOMETHIONINE 4 A MSE 112 A MSE 102 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 76 ? A ASP 66 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OD1 ? A ASN 78 ? A ASN 68 ? 1_555 86.1 ? 2 OD1 ? A ASP 76 ? A ASP 66 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OD1 ? A ASP 80 ? A ASP 70 ? 1_555 89.3 ? 3 OD1 ? A ASN 78 ? A ASN 68 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OD1 ? A ASP 80 ? A ASP 70 ? 1_555 75.5 ? 4 OD1 ? A ASP 76 ? A ASP 66 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? A ARG 82 ? A ARG 72 ? 1_555 89.8 ? 5 OD1 ? A ASN 78 ? A ASN 68 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? A ARG 82 ? A ARG 72 ? 1_555 151.8 ? 6 OD1 ? A ASP 80 ? A ASP 70 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? A ARG 82 ? A ARG 72 ? 1_555 76.5 ? 7 OD1 ? A ASP 76 ? A ASP 66 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 87 ? A GLU 77 ? 1_555 104.5 ? 8 OD1 ? A ASN 78 ? A ASN 68 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 87 ? A GLU 77 ? 1_555 127.5 ? 9 OD1 ? A ASP 80 ? A ASP 70 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 87 ? A GLU 77 ? 1_555 153.2 ? 10 O ? A ARG 82 ? A ARG 72 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 87 ? A GLU 77 ? 1_555 80.5 ? 11 OD1 ? A ASP 76 ? A ASP 66 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 87 ? A GLU 77 ? 1_555 92.3 ? 12 OD1 ? A ASN 78 ? A ASN 68 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 87 ? A GLU 77 ? 1_555 75.3 ? 13 OD1 ? A ASP 80 ? A ASP 70 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 87 ? A GLU 77 ? 1_555 150.6 ? 14 O ? A ARG 82 ? A ARG 72 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 87 ? A GLU 77 ? 1_555 132.8 ? 15 OE1 ? A GLU 87 ? A GLU 77 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 87 ? A GLU 77 ? 1_555 53.4 ? 16 OD1 ? A ASP 76 ? A ASP 66 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 403 ? 1_555 167.2 ? 17 OD1 ? A ASN 78 ? A ASN 68 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 403 ? 1_555 86.8 ? 18 OD1 ? A ASP 80 ? A ASP 70 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 403 ? 1_555 78.6 ? 19 O ? A ARG 82 ? A ARG 72 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 403 ? 1_555 91.4 ? 20 OE1 ? A GLU 87 ? A GLU 77 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 403 ? 1_555 88.3 ? 21 OE2 ? A GLU 87 ? A GLU 77 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 403 ? 1_555 96.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SnB phasing . ? 2 RESOLVE 'model building' . ? 3 REFMAC refinement 5.2.0019 ? 4 HKL-2000 'data reduction' . ? 5 SCALEPACK 'data scaling' . ? 6 RESOLVE phasing . ? 7 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 6 ? OG1 ? A THR 16 OG1 2 1 Y 1 A THR 6 ? CG2 ? A THR 16 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -9 ? A MSE 1 2 1 Y 1 A GLY -8 ? A GLY 2 3 1 Y 1 A HIS -7 ? A HIS 3 4 1 Y 1 A HIS -6 ? A HIS 4 5 1 Y 1 A HIS -5 ? A HIS 5 6 1 Y 1 A HIS -4 ? A HIS 6 7 1 Y 1 A HIS -3 ? A HIS 7 8 1 Y 1 A HIS -2 ? A HIS 8 9 1 Y 1 A SER -1 ? A SER 9 10 1 Y 1 A HIS 0 ? A HIS 10 11 1 Y 1 A VAL 1 ? A VAL 11 12 1 Y 1 A ALA 2 ? A ALA 12 13 1 Y 1 A GLN 3 ? A GLN 13 14 1 Y 1 A PHE 4 ? A PHE 14 15 1 Y 1 A PRO 5 ? A PRO 15 16 1 Y 1 A GLN 104 ? A GLN 114 17 1 Y 1 A GLN 105 ? A GLN 115 18 1 Y 1 A PRO 106 ? A PRO 116 19 1 Y 1 A VAL 107 ? A VAL 117 20 1 Y 1 A ALA 108 ? A ALA 118 21 1 Y 1 A ILE 109 ? A ILE 119 22 1 Y 1 A SER 110 ? A SER 120 23 1 Y 1 A SER 111 ? A SER 121 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'SULFATE ION' SO4 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? #