data_3FIL # _entry.id 3FIL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FIL pdb_00003fil 10.2210/pdb3fil/pdb RCSB RCSB050635 ? ? WWPDB D_1000050635 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ON8 'A stabilized Gbeta1 variant by in vitro evolution and computational design which does not dimerize' unspecified PDB 2ONQ 'A stabilized Gbeta1 variant by in vitro evolution and computational design which does not dimerize' unspecified PDB 1PGA 'TWO CRYSTAL STRUCTURES OF THE B1 IMMUNOGLOBULIN-BINDING DOMAIN OF STREPTOCOCCAL PROTEIN G AND COMPARISON WITH NMR' unspecified PDB 1GB4 'HYPERTHERMOPHILIC VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G, NMR, 47 STRUCTURES' unspecified PDB 1FCC 'CRYSTAL STRUCTURE OF THE C2 FRAGMENT OF STREPTOCOCCAL PROTEIN G IN COMPLEX WITH THE FC DOMAIN OF HUMAN IGG' unspecified PDB 2QMT 'Crystal Polymorphism of Protein GB1 Examined by Solid-state NMR and X-ray Diffraction' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FIL _pdbx_database_status.recvd_initial_deposition_date 2008-12-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Max, K.E.A.' 1 'Heinemann, U.' 2 # _citation.id primary _citation.title 'Dimer Formation of a Stabilized Gbeta1 Variant: A Structural and Energetic Analysis' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 391 _citation.page_first 918 _citation.page_last 932 _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19527728 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2009.06.031 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thoms, S.' 1 ? primary 'Max, K.E.A.' 2 ? primary 'Wunderlich, M.' 3 ? primary 'Jacso, T.' 4 ? primary 'Lilie, H.' 5 ? primary 'Reif, B.' 6 ? primary 'Heinemann, U.' 7 ? primary 'Schmid, F.X.' 8 ? # _cell.entry_id 3FIL _cell.length_a 29.694 _cell.length_b 38.930 _cell.length_c 83.326 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FIL _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Immunoglobulin G-binding protein G' 6249.999 1 ? 'T2Q, E15V, T16L, T18I, N37L' 'immunoglobulin binding domain, UNP residues 303-357' ? 2 polymer man 'Immunoglobulin G-binding protein G' 6221.989 1 ? 'T2Q, E15V, T16L, T18I, N37L' 'immunoglobulin binding domain, UNP residues 303-357' ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 water nat water 18.015 239 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'IgG-binding protein G' 2 'IgG-binding protein G' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(FME)QYKLILNGKTLKGVLTIEAVDAATAEKVFKQYANDLGVDGEWTYDDATKTFTVTE' MQYKLILNGKTLKGVLTIEAVDAATAEKVFKQYANDLGVDGEWTYDDATKTFTVTE A ? 2 'polypeptide(L)' no no MQYKLILNGKTLKGVLTIEAVDAATAEKVFKQYANDLGVDGEWTYDDATKTFTVTE MQYKLILNGKTLKGVLTIEAVDAATAEKVFKQYANDLGVDGEWTYDDATKTFTVTE B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FME n 1 2 GLN n 1 3 TYR n 1 4 LYS n 1 5 LEU n 1 6 ILE n 1 7 LEU n 1 8 ASN n 1 9 GLY n 1 10 LYS n 1 11 THR n 1 12 LEU n 1 13 LYS n 1 14 GLY n 1 15 VAL n 1 16 LEU n 1 17 THR n 1 18 ILE n 1 19 GLU n 1 20 ALA n 1 21 VAL n 1 22 ASP n 1 23 ALA n 1 24 ALA n 1 25 THR n 1 26 ALA n 1 27 GLU n 1 28 LYS n 1 29 VAL n 1 30 PHE n 1 31 LYS n 1 32 GLN n 1 33 TYR n 1 34 ALA n 1 35 ASN n 1 36 ASP n 1 37 LEU n 1 38 GLY n 1 39 VAL n 1 40 ASP n 1 41 GLY n 1 42 GLU n 1 43 TRP n 1 44 THR n 1 45 TYR n 1 46 ASP n 1 47 ASP n 1 48 ALA n 1 49 THR n 1 50 LYS n 1 51 THR n 1 52 PHE n 1 53 THR n 1 54 VAL n 1 55 THR n 1 56 GLU n 2 1 MET n 2 2 GLN n 2 3 TYR n 2 4 LYS n 2 5 LEU n 2 6 ILE n 2 7 LEU n 2 8 ASN n 2 9 GLY n 2 10 LYS n 2 11 THR n 2 12 LEU n 2 13 LYS n 2 14 GLY n 2 15 VAL n 2 16 LEU n 2 17 THR n 2 18 ILE n 2 19 GLU n 2 20 ALA n 2 21 VAL n 2 22 ASP n 2 23 ALA n 2 24 ALA n 2 25 THR n 2 26 ALA n 2 27 GLU n 2 28 LYS n 2 29 VAL n 2 30 PHE n 2 31 LYS n 2 32 GLN n 2 33 TYR n 2 34 ALA n 2 35 ASN n 2 36 ASP n 2 37 LEU n 2 38 GLY n 2 39 VAL n 2 40 ASP n 2 41 GLY n 2 42 GLU n 2 43 TRP n 2 44 THR n 2 45 TYR n 2 46 ASP n 2 47 ASP n 2 48 ALA n 2 49 THR n 2 50 LYS n 2 51 THR n 2 52 PHE n 2 53 THR n 2 54 VAL n 2 55 THR n 2 56 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? spg ? G148 ? ? ? ? ;Streptococcus sp. 'group G' ; 1320 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(de3)' ? ? ? ? ? ? ? PLASMID ? ? ? pET11 ? ? 2 1 sample ? ? ? ? ? spg ? G148 ? ? ? ? ;Streptococcus sp. 'group G' ; 1320 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(de3)' ? ? ? ? ? ? ? PLASMID ? ? ? pET11 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SPG2_STRSG P19909 1 TYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 303 ? 2 UNP SPG2_STRSG P19909 2 TYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 303 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FIL A 2 ? 56 ? P19909 303 ? 357 ? 2 56 2 2 3FIL B 2 ? 56 ? P19909 303 ? 357 ? 2 56 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FIL FME A 1 ? UNP P19909 ? ? 'SEE REMARK 999' 1 1 1 3FIL GLN A 2 ? UNP P19909 THR 303 'engineered mutation' 2 2 1 3FIL VAL A 15 ? UNP P19909 GLU 316 'engineered mutation' 15 3 1 3FIL LEU A 16 ? UNP P19909 THR 317 'engineered mutation' 16 4 1 3FIL ILE A 18 ? UNP P19909 THR 319 'engineered mutation' 18 5 1 3FIL LEU A 37 ? UNP P19909 ASN 338 'engineered mutation' 37 6 2 3FIL MET B 1 ? UNP P19909 ? ? 'initiating methionine' 1 7 2 3FIL GLN B 2 ? UNP P19909 THR 303 'engineered mutation' 2 8 2 3FIL VAL B 15 ? UNP P19909 GLU 316 'engineered mutation' 15 9 2 3FIL LEU B 16 ? UNP P19909 THR 317 'engineered mutation' 16 10 2 3FIL ILE B 18 ? UNP P19909 THR 319 'engineered mutation' 18 11 2 3FIL LEU B 37 ? UNP P19909 ASN 338 'engineered mutation' 37 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 FME 'L-peptide linking' n N-FORMYLMETHIONINE ? 'C6 H11 N O3 S' 177.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FIL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_percent_sol 39.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;protein solution: 50mM sodium acetate pH 5.6, 50mg/ml protein. reservoir solution: 25% PEG 3350, 0.1M citric acids pH 3.5. Drop 400nl protein solution & 400nl reservoir solution, 80 micro-l reservoir, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.pdbx_collection_date 2006-03-06 _diffrn_detector.details 'Mirror 1: Silicon, active surface 50nm Rh-coated. Mirror 2: Glas, active surface 50 nm Rh-coated.' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'silicon-111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.88561 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.88561 # _reflns.entry_id 3FIL _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 19.466 _reflns.d_resolution_high 0.842 _reflns.number_obs 86548 _reflns.number_all 87156 _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value 0.063 _reflns.pdbx_netI_over_sigmaI 13.26 _reflns.B_iso_Wilson_estimate 11.564 _reflns.pdbx_redundancy 7.08 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.84 _reflns_shell.d_res_low 0.98 _reflns_shell.percent_possible_all 84.8 _reflns_shell.Rmerge_I_obs 0.481 _reflns_shell.pdbx_Rsym_value 0.775 _reflns_shell.meanI_over_sigI_obs 2.56 _reflns_shell.pdbx_redundancy 5.82 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 9687 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FIL _refine.ls_number_reflns_obs 76999 _refine.ls_number_reflns_all 77514 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.466 _refine.ls_d_res_high 0.88 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.1250 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1239 _refine.ls_R_factor_R_free 0.1493 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 10668 _refine.ls_number_restraints 13229 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ;According to PROCHECK and WHATCHECK, no backbone outliers were reported. The ASN A8 backbone and sidechain groups are centered in their 2FOFC density ; _refine.pdbx_starting_model 'PDB ENTRY 1PGA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3FIL _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 17 _refine_analyze.occupancy_sum_hydrogen 853.00 _refine_analyze.occupancy_sum_non_hydrogen 1102.25 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 939 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 245 _refine_hist.number_atoms_total 1185 _refine_hist.d_res_high 0.88 _refine_hist.d_res_low 19.466 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0302 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.075 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.086 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.071 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.037 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.083 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 3FIL _pdbx_refine.R_factor_all_no_cutoff 0.1239 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1190 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 64945 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FIL _struct.title 'Structural and energetic determinants for hyperstable variants of GB1 obtained from in-vitro evolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FIL _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, PROTEIN BINDING, Cell wall, IgG-binding protein, Peptidoglycan-anchor, Secreted ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 22 ? LEU A 37 ? ASP A 22 LEU A 37 1 ? 16 HELX_P HELX_P2 2 ASP A 47 ? THR A 49 ? ASP A 47 THR A 49 5 ? 3 HELX_P HELX_P3 3 ASP B 22 ? GLY B 38 ? ASP B 22 GLY B 38 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FME 1 C A ? ? 1_555 A GLN 2 N ? ? A FME 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A FME 1 C B ? ? 1_555 A GLN 2 N ? ? A FME 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? metalc1 metalc ? ? A ASP 36 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 36 A CA 240 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 124 A CA 240 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc3 metalc ? ? D HOH . O A ? ? 1_555 C CA . CA ? ? A HOH 229 A CA 240 1_555 ? ? ? ? ? ? ? 2.412 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 240 B HOH 69 1_555 ? ? ? ? ? ? ? 2.538 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 240 B HOH 118 1_555 ? ? ? ? ? ? ? 2.372 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 42 ? ASP A 46 ? GLU A 42 ASP A 46 A 2 THR A 51 ? THR A 55 ? THR A 51 THR A 55 A 3 GLN A 2 ? ASN A 8 ? GLN A 2 ASN A 8 A 4 LYS A 13 ? GLU A 19 ? LYS A 13 GLU A 19 A 5 LYS B 13 ? GLU B 19 ? LYS B 13 GLU B 19 A 6 GLN B 2 ? ASN B 8 ? GLN B 2 ASN B 8 A 7 THR B 51 ? THR B 55 ? THR B 51 THR B 55 A 8 GLU B 42 ? ASP B 46 ? GLU B 42 ASP B 46 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 46 ? N ASP A 46 O THR A 51 ? O THR A 51 A 2 3 O PHE A 52 ? O PHE A 52 N LYS A 4 ? N LYS A 4 A 3 4 N LEU A 7 ? N LEU A 7 O GLY A 14 ? O GLY A 14 A 4 5 N THR A 17 ? N THR A 17 O LYS B 13 ? O LYS B 13 A 5 6 O LEU B 16 ? O LEU B 16 N LEU B 5 ? N LEU B 5 A 6 7 N LYS B 4 ? N LYS B 4 O PHE B 52 ? O PHE B 52 A 7 8 O THR B 55 ? O THR B 55 N GLU B 42 ? N GLU B 42 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 240 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 240' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 36 ? ASP A 36 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 124 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 229 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH B 69 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 118 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 178 . ? 3_455 ? # _database_PDB_matrix.entry_id 3FIL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3FIL _atom_sites.fract_transf_matrix[1][1] 0.033677 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025687 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012001 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FME 1 1 1 FME FME A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 GLU 56 56 56 GLU GLU A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 TYR 3 3 3 TYR TYR B . n B 2 4 LYS 4 4 4 LYS LYS B . n B 2 5 LEU 5 5 5 LEU LEU B . n B 2 6 ILE 6 6 6 ILE ILE B . n B 2 7 LEU 7 7 7 LEU LEU B . n B 2 8 ASN 8 8 8 ASN ASN B . n B 2 9 GLY 9 9 9 GLY GLY B . n B 2 10 LYS 10 10 10 LYS LYS B . n B 2 11 THR 11 11 11 THR THR B . n B 2 12 LEU 12 12 12 LEU LEU B . n B 2 13 LYS 13 13 13 LYS LYS B . n B 2 14 GLY 14 14 14 GLY GLY B . n B 2 15 VAL 15 15 15 VAL VAL B . n B 2 16 LEU 16 16 16 LEU LEU B . n B 2 17 THR 17 17 17 THR THR B . n B 2 18 ILE 18 18 18 ILE ILE B . n B 2 19 GLU 19 19 19 GLU GLU B . n B 2 20 ALA 20 20 20 ALA ALA B . n B 2 21 VAL 21 21 21 VAL VAL B . n B 2 22 ASP 22 22 22 ASP ASP B . n B 2 23 ALA 23 23 23 ALA ALA B . n B 2 24 ALA 24 24 24 ALA ALA B . n B 2 25 THR 25 25 25 THR THR B . n B 2 26 ALA 26 26 26 ALA ALA B . n B 2 27 GLU 27 27 27 GLU GLU B . n B 2 28 LYS 28 28 28 LYS LYS B . n B 2 29 VAL 29 29 29 VAL VAL B . n B 2 30 PHE 30 30 30 PHE PHE B . n B 2 31 LYS 31 31 31 LYS LYS B . n B 2 32 GLN 32 32 32 GLN GLN B . n B 2 33 TYR 33 33 33 TYR TYR B . n B 2 34 ALA 34 34 34 ALA ALA B . n B 2 35 ASN 35 35 35 ASN ASN B . n B 2 36 ASP 36 36 36 ASP ASP B . n B 2 37 LEU 37 37 37 LEU LEU B . n B 2 38 GLY 38 38 38 GLY GLY B . n B 2 39 VAL 39 39 39 VAL VAL B . n B 2 40 ASP 40 40 40 ASP ASP B . n B 2 41 GLY 41 41 41 GLY GLY B . n B 2 42 GLU 42 42 42 GLU GLU B . n B 2 43 TRP 43 43 43 TRP TRP B . n B 2 44 THR 44 44 44 THR THR B . n B 2 45 TYR 45 45 45 TYR TYR B . n B 2 46 ASP 46 46 46 ASP ASP B . n B 2 47 ASP 47 47 47 ASP ASP B . n B 2 48 ALA 48 48 48 ALA ALA B . n B 2 49 THR 49 49 49 THR THR B . n B 2 50 LYS 50 50 50 LYS LYS B . n B 2 51 THR 51 51 51 THR THR B . n B 2 52 PHE 52 52 52 PHE PHE B . n B 2 53 THR 53 53 53 THR THR B . n B 2 54 VAL 54 54 54 VAL VAL B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 GLU 56 56 56 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 240 240 CA CA A . D 4 HOH 1 57 17 HOH HOH A . D 4 HOH 2 58 38 HOH HOH A . D 4 HOH 3 61 61 HOH HOH A . D 4 HOH 4 65 65 HOH HOH A . D 4 HOH 5 73 73 HOH HOH A . D 4 HOH 6 85 85 HOH HOH A . D 4 HOH 7 86 86 HOH HOH A . D 4 HOH 8 87 87 HOH HOH A . D 4 HOH 9 89 89 HOH HOH A . D 4 HOH 10 90 90 HOH HOH A . D 4 HOH 11 91 91 HOH HOH A . D 4 HOH 12 92 92 HOH HOH A . D 4 HOH 13 93 93 HOH HOH A . D 4 HOH 14 94 94 HOH HOH A . D 4 HOH 15 95 95 HOH HOH A . D 4 HOH 16 96 96 HOH HOH A . D 4 HOH 17 97 97 HOH HOH A . D 4 HOH 18 98 98 HOH HOH A . D 4 HOH 19 99 99 HOH HOH A . D 4 HOH 20 100 100 HOH HOH A . D 4 HOH 21 101 101 HOH HOH A . D 4 HOH 22 102 102 HOH HOH A . D 4 HOH 23 103 103 HOH HOH A . D 4 HOH 24 105 105 HOH HOH A . D 4 HOH 25 106 106 HOH HOH A . D 4 HOH 26 107 107 HOH HOH A . D 4 HOH 27 108 108 HOH HOH A . D 4 HOH 28 110 110 HOH HOH A . D 4 HOH 29 111 111 HOH HOH A . D 4 HOH 30 112 112 HOH HOH A . D 4 HOH 31 113 113 HOH HOH A . D 4 HOH 32 114 114 HOH HOH A . D 4 HOH 33 115 115 HOH HOH A . D 4 HOH 34 116 116 HOH HOH A . D 4 HOH 35 117 117 HOH HOH A . D 4 HOH 36 118 118 HOH HOH A . D 4 HOH 37 119 119 HOH HOH A . D 4 HOH 38 120 120 HOH HOH A . D 4 HOH 39 121 121 HOH HOH A . D 4 HOH 40 122 122 HOH HOH A . D 4 HOH 41 123 123 HOH HOH A . D 4 HOH 42 124 124 HOH HOH A . D 4 HOH 43 126 126 HOH HOH A . D 4 HOH 44 127 127 HOH HOH A . D 4 HOH 45 128 128 HOH HOH A . D 4 HOH 46 129 129 HOH HOH A . D 4 HOH 47 130 130 HOH HOH A . D 4 HOH 48 131 131 HOH HOH A . D 4 HOH 49 132 132 HOH HOH A . D 4 HOH 50 133 133 HOH HOH A . D 4 HOH 51 134 134 HOH HOH A . D 4 HOH 52 136 136 HOH HOH A . D 4 HOH 53 137 137 HOH HOH A . D 4 HOH 54 138 138 HOH HOH A . D 4 HOH 55 139 139 HOH HOH A . D 4 HOH 56 140 140 HOH HOH A . D 4 HOH 57 141 141 HOH HOH A . D 4 HOH 58 142 142 HOH HOH A . D 4 HOH 59 143 143 HOH HOH A . D 4 HOH 60 145 145 HOH HOH A . D 4 HOH 61 146 146 HOH HOH A . D 4 HOH 62 147 147 HOH HOH A . D 4 HOH 63 148 148 HOH HOH A . D 4 HOH 64 149 149 HOH HOH A . D 4 HOH 65 150 150 HOH HOH A . D 4 HOH 66 151 151 HOH HOH A . D 4 HOH 67 152 152 HOH HOH A . D 4 HOH 68 153 153 HOH HOH A . D 4 HOH 69 154 154 HOH HOH A . D 4 HOH 70 155 155 HOH HOH A . D 4 HOH 71 156 156 HOH HOH A . D 4 HOH 72 157 157 HOH HOH A . D 4 HOH 73 158 158 HOH HOH A . D 4 HOH 74 159 159 HOH HOH A . D 4 HOH 75 160 160 HOH HOH A . D 4 HOH 76 161 161 HOH HOH A . D 4 HOH 77 162 162 HOH HOH A . D 4 HOH 78 163 163 HOH HOH A . D 4 HOH 79 164 164 HOH HOH A . D 4 HOH 80 165 165 HOH HOH A . D 4 HOH 81 166 166 HOH HOH A . D 4 HOH 82 167 167 HOH HOH A . D 4 HOH 83 168 168 HOH HOH A . D 4 HOH 84 169 169 HOH HOH A . D 4 HOH 85 170 170 HOH HOH A . D 4 HOH 86 172 172 HOH HOH A . D 4 HOH 87 173 173 HOH HOH A . D 4 HOH 88 175 175 HOH HOH A . D 4 HOH 89 179 179 HOH HOH A . D 4 HOH 90 182 182 HOH HOH A . D 4 HOH 91 187 187 HOH HOH A . D 4 HOH 92 189 189 HOH HOH A . D 4 HOH 93 190 190 HOH HOH A . D 4 HOH 94 191 191 HOH HOH A . D 4 HOH 95 192 192 HOH HOH A . D 4 HOH 96 193 193 HOH HOH A . D 4 HOH 97 199 199 HOH HOH A . D 4 HOH 98 200 200 HOH HOH A . D 4 HOH 99 201 201 HOH HOH A . D 4 HOH 100 206 206 HOH HOH A . D 4 HOH 101 208 208 HOH HOH A . D 4 HOH 102 210 210 HOH HOH A . D 4 HOH 103 211 211 HOH HOH A . D 4 HOH 104 212 212 HOH HOH A . D 4 HOH 105 217 217 HOH HOH A . D 4 HOH 106 219 219 HOH HOH A . D 4 HOH 107 221 221 HOH HOH A . D 4 HOH 108 223 223 HOH HOH A . D 4 HOH 109 224 224 HOH HOH A . D 4 HOH 110 229 229 HOH HOH A . D 4 HOH 111 234 234 HOH HOH A . D 4 HOH 112 237 237 HOH HOH A . E 4 HOH 1 57 57 HOH HOH B . E 4 HOH 2 58 58 HOH HOH B . E 4 HOH 3 59 59 HOH HOH B . E 4 HOH 4 60 60 HOH HOH B . E 4 HOH 5 61 1 HOH HOH B . E 4 HOH 6 62 62 HOH HOH B . E 4 HOH 7 63 63 HOH HOH B . E 4 HOH 8 64 64 HOH HOH B . E 4 HOH 9 65 2 HOH HOH B . E 4 HOH 10 66 66 HOH HOH B . E 4 HOH 11 67 67 HOH HOH B . E 4 HOH 12 68 68 HOH HOH B . E 4 HOH 13 69 69 HOH HOH B . E 4 HOH 14 70 70 HOH HOH B . E 4 HOH 15 71 71 HOH HOH B . E 4 HOH 16 72 72 HOH HOH B . E 4 HOH 17 73 3 HOH HOH B . E 4 HOH 18 74 74 HOH HOH B . E 4 HOH 19 75 75 HOH HOH B . E 4 HOH 20 76 76 HOH HOH B . E 4 HOH 21 77 77 HOH HOH B . E 4 HOH 22 78 78 HOH HOH B . E 4 HOH 23 79 79 HOH HOH B . E 4 HOH 24 80 80 HOH HOH B . E 4 HOH 25 81 81 HOH HOH B . E 4 HOH 26 82 82 HOH HOH B . E 4 HOH 27 83 83 HOH HOH B . E 4 HOH 28 84 84 HOH HOH B . E 4 HOH 29 85 4 HOH HOH B . E 4 HOH 30 86 5 HOH HOH B . E 4 HOH 31 87 6 HOH HOH B . E 4 HOH 32 88 88 HOH HOH B . E 4 HOH 33 89 7 HOH HOH B . E 4 HOH 34 90 8 HOH HOH B . E 4 HOH 35 91 9 HOH HOH B . E 4 HOH 36 92 10 HOH HOH B . E 4 HOH 37 93 11 HOH HOH B . E 4 HOH 38 94 12 HOH HOH B . E 4 HOH 39 95 13 HOH HOH B . E 4 HOH 40 96 14 HOH HOH B . E 4 HOH 41 97 15 HOH HOH B . E 4 HOH 42 98 16 HOH HOH B . E 4 HOH 43 99 18 HOH HOH B . E 4 HOH 44 100 19 HOH HOH B . E 4 HOH 45 101 20 HOH HOH B . E 4 HOH 46 102 21 HOH HOH B . E 4 HOH 47 103 22 HOH HOH B . E 4 HOH 48 104 104 HOH HOH B . E 4 HOH 49 105 23 HOH HOH B . E 4 HOH 50 106 24 HOH HOH B . E 4 HOH 51 107 25 HOH HOH B . E 4 HOH 52 108 26 HOH HOH B . E 4 HOH 53 109 109 HOH HOH B . E 4 HOH 54 110 27 HOH HOH B . E 4 HOH 55 111 28 HOH HOH B . E 4 HOH 56 112 29 HOH HOH B . E 4 HOH 57 113 30 HOH HOH B . E 4 HOH 58 114 31 HOH HOH B . E 4 HOH 59 115 32 HOH HOH B . E 4 HOH 60 116 33 HOH HOH B . E 4 HOH 61 117 34 HOH HOH B . E 4 HOH 62 118 35 HOH HOH B . E 4 HOH 63 119 36 HOH HOH B . E 4 HOH 64 120 37 HOH HOH B . E 4 HOH 65 121 39 HOH HOH B . E 4 HOH 66 122 40 HOH HOH B . E 4 HOH 67 123 41 HOH HOH B . E 4 HOH 68 124 42 HOH HOH B . E 4 HOH 69 125 125 HOH HOH B . E 4 HOH 70 126 43 HOH HOH B . E 4 HOH 71 127 44 HOH HOH B . E 4 HOH 72 128 45 HOH HOH B . E 4 HOH 73 129 46 HOH HOH B . E 4 HOH 74 130 47 HOH HOH B . E 4 HOH 75 131 48 HOH HOH B . E 4 HOH 76 132 49 HOH HOH B . E 4 HOH 77 133 50 HOH HOH B . E 4 HOH 78 134 51 HOH HOH B . E 4 HOH 79 135 135 HOH HOH B . E 4 HOH 80 136 52 HOH HOH B . E 4 HOH 81 137 53 HOH HOH B . E 4 HOH 82 138 54 HOH HOH B . E 4 HOH 83 139 55 HOH HOH B . E 4 HOH 84 140 56 HOH HOH B . E 4 HOH 85 144 144 HOH HOH B . E 4 HOH 86 171 171 HOH HOH B . E 4 HOH 87 174 174 HOH HOH B . E 4 HOH 88 176 176 HOH HOH B . E 4 HOH 89 177 177 HOH HOH B . E 4 HOH 90 178 178 HOH HOH B . E 4 HOH 91 180 180 HOH HOH B . E 4 HOH 92 181 181 HOH HOH B . E 4 HOH 93 183 183 HOH HOH B . E 4 HOH 94 184 184 HOH HOH B . E 4 HOH 95 185 185 HOH HOH B . E 4 HOH 96 186 186 HOH HOH B . E 4 HOH 97 188 188 HOH HOH B . E 4 HOH 98 194 194 HOH HOH B . E 4 HOH 99 195 195 HOH HOH B . E 4 HOH 100 196 196 HOH HOH B . E 4 HOH 101 197 197 HOH HOH B . E 4 HOH 102 198 198 HOH HOH B . E 4 HOH 103 202 202 HOH HOH B . E 4 HOH 104 203 203 HOH HOH B . E 4 HOH 105 204 204 HOH HOH B . E 4 HOH 106 205 205 HOH HOH B . E 4 HOH 107 207 207 HOH HOH B . E 4 HOH 108 209 209 HOH HOH B . E 4 HOH 109 213 213 HOH HOH B . E 4 HOH 110 214 214 HOH HOH B . E 4 HOH 111 215 215 HOH HOH B . E 4 HOH 112 216 216 HOH HOH B . E 4 HOH 113 218 218 HOH HOH B . E 4 HOH 114 220 220 HOH HOH B . E 4 HOH 115 222 222 HOH HOH B . E 4 HOH 116 225 225 HOH HOH B . E 4 HOH 117 226 226 HOH HOH B . E 4 HOH 118 227 227 HOH HOH B . E 4 HOH 119 228 228 HOH HOH B . E 4 HOH 120 230 230 HOH HOH B . E 4 HOH 121 231 231 HOH HOH B . E 4 HOH 122 232 232 HOH HOH B . E 4 HOH 123 233 233 HOH HOH B . E 4 HOH 124 235 235 HOH HOH B . E 4 HOH 125 236 236 HOH HOH B . E 4 HOH 126 238 238 HOH HOH B . E 4 HOH 127 239 239 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id FME _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id FME _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details N-FORMYLMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1050 ? 1 MORE -13 ? 1 'SSA (A^2)' 6310 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 36 ? A ASP 36 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? D HOH . ? A HOH 124 ? 1_555 83.8 ? 2 OD1 ? A ASP 36 ? A ASP 36 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O A D HOH . ? A HOH 229 ? 1_555 75.7 ? 3 O ? D HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O A D HOH . ? A HOH 229 ? 1_555 86.1 ? 4 OD1 ? A ASP 36 ? A ASP 36 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? E HOH . ? B HOH 69 ? 1_555 97.8 ? 5 O ? D HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? E HOH . ? B HOH 69 ? 1_555 173.2 ? 6 O A D HOH . ? A HOH 229 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? E HOH . ? B HOH 69 ? 1_555 100.7 ? 7 OD1 ? A ASP 36 ? A ASP 36 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 105.3 ? 8 O ? D HOH . ? A HOH 124 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 93.0 ? 9 O A D HOH . ? A HOH 229 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 178.6 ? 10 O ? E HOH . ? B HOH 69 ? 1_555 CA ? C CA . ? A CA 240 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 80.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond 11 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.value' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 10 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 4 'Structure model' '_struct_ref_seq_dif.details' 22 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 AMoRE phasing . ? 2 SHELXL-97 refinement . ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3FIL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;FME IS INITIATING N-FORMYLMETHIONINE THAT IS THE BIOLOGICAL STARTING RESIDUE IN E. COLI WHICH HAS BEEN USED FOR BACTERIAL EXPRESSION. THE OTHER WAY, IN CASE OF THE STARTING METHIONINE OF CHAIN B, THE DEPOSITORS DID NOT SEE THESE ADDITIONAL GROUPS, WHICH IS PROBABLY DUE TO THE FACT THAT THE SIDECHAIN OF THIS RESIDUE IS IN A DIFFERENT CRYSTAL PACKING ENVIRONMENT. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 8 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -101.59 _pdbx_validate_torsion.psi 76.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 19 ? CD ? A GLU 19 CD 2 1 Y 0 A GLU 19 ? OE1 ? A GLU 19 OE1 3 1 Y 0 A GLU 19 ? OE2 ? A GLU 19 OE2 4 1 Y 0 A LYS 28 ? CE ? A LYS 28 CE 5 1 Y 0 A LYS 28 ? NZ ? A LYS 28 NZ 6 1 Y 0 B MET 1 ? SD ? B MET 1 SD 7 1 Y 0 B MET 1 ? CE ? B MET 1 CE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CA CA CA N N 47 FME N N N N 48 FME CN C N N 49 FME O1 O N N 50 FME CA C N S 51 FME CB C N N 52 FME CG C N N 53 FME SD S N N 54 FME CE C N N 55 FME C C N N 56 FME O O N N 57 FME OXT O N N 58 FME H H N N 59 FME HCN H N N 60 FME HA H N N 61 FME HB2 H N N 62 FME HB3 H N N 63 FME HG2 H N N 64 FME HG3 H N N 65 FME HE1 H N N 66 FME HE2 H N N 67 FME HE3 H N N 68 FME HXT H N N 69 GLN N N N N 70 GLN CA C N S 71 GLN C C N N 72 GLN O O N N 73 GLN CB C N N 74 GLN CG C N N 75 GLN CD C N N 76 GLN OE1 O N N 77 GLN NE2 N N N 78 GLN OXT O N N 79 GLN H H N N 80 GLN H2 H N N 81 GLN HA H N N 82 GLN HB2 H N N 83 GLN HB3 H N N 84 GLN HG2 H N N 85 GLN HG3 H N N 86 GLN HE21 H N N 87 GLN HE22 H N N 88 GLN HXT H N N 89 GLU N N N N 90 GLU CA C N S 91 GLU C C N N 92 GLU O O N N 93 GLU CB C N N 94 GLU CG C N N 95 GLU CD C N N 96 GLU OE1 O N N 97 GLU OE2 O N N 98 GLU OXT O N N 99 GLU H H N N 100 GLU H2 H N N 101 GLU HA H N N 102 GLU HB2 H N N 103 GLU HB3 H N N 104 GLU HG2 H N N 105 GLU HG3 H N N 106 GLU HE2 H N N 107 GLU HXT H N N 108 GLY N N N N 109 GLY CA C N N 110 GLY C C N N 111 GLY O O N N 112 GLY OXT O N N 113 GLY H H N N 114 GLY H2 H N N 115 GLY HA2 H N N 116 GLY HA3 H N N 117 GLY HXT H N N 118 HOH O O N N 119 HOH H1 H N N 120 HOH H2 H N N 121 ILE N N N N 122 ILE CA C N S 123 ILE C C N N 124 ILE O O N N 125 ILE CB C N S 126 ILE CG1 C N N 127 ILE CG2 C N N 128 ILE CD1 C N N 129 ILE OXT O N N 130 ILE H H N N 131 ILE H2 H N N 132 ILE HA H N N 133 ILE HB H N N 134 ILE HG12 H N N 135 ILE HG13 H N N 136 ILE HG21 H N N 137 ILE HG22 H N N 138 ILE HG23 H N N 139 ILE HD11 H N N 140 ILE HD12 H N N 141 ILE HD13 H N N 142 ILE HXT H N N 143 LEU N N N N 144 LEU CA C N S 145 LEU C C N N 146 LEU O O N N 147 LEU CB C N N 148 LEU CG C N N 149 LEU CD1 C N N 150 LEU CD2 C N N 151 LEU OXT O N N 152 LEU H H N N 153 LEU H2 H N N 154 LEU HA H N N 155 LEU HB2 H N N 156 LEU HB3 H N N 157 LEU HG H N N 158 LEU HD11 H N N 159 LEU HD12 H N N 160 LEU HD13 H N N 161 LEU HD21 H N N 162 LEU HD22 H N N 163 LEU HD23 H N N 164 LEU HXT H N N 165 LYS N N N N 166 LYS CA C N S 167 LYS C C N N 168 LYS O O N N 169 LYS CB C N N 170 LYS CG C N N 171 LYS CD C N N 172 LYS CE C N N 173 LYS NZ N N N 174 LYS OXT O N N 175 LYS H H N N 176 LYS H2 H N N 177 LYS HA H N N 178 LYS HB2 H N N 179 LYS HB3 H N N 180 LYS HG2 H N N 181 LYS HG3 H N N 182 LYS HD2 H N N 183 LYS HD3 H N N 184 LYS HE2 H N N 185 LYS HE3 H N N 186 LYS HZ1 H N N 187 LYS HZ2 H N N 188 LYS HZ3 H N N 189 LYS HXT H N N 190 MET N N N N 191 MET CA C N S 192 MET C C N N 193 MET O O N N 194 MET CB C N N 195 MET CG C N N 196 MET SD S N N 197 MET CE C N N 198 MET OXT O N N 199 MET H H N N 200 MET H2 H N N 201 MET HA H N N 202 MET HB2 H N N 203 MET HB3 H N N 204 MET HG2 H N N 205 MET HG3 H N N 206 MET HE1 H N N 207 MET HE2 H N N 208 MET HE3 H N N 209 MET HXT H N N 210 PHE N N N N 211 PHE CA C N S 212 PHE C C N N 213 PHE O O N N 214 PHE CB C N N 215 PHE CG C Y N 216 PHE CD1 C Y N 217 PHE CD2 C Y N 218 PHE CE1 C Y N 219 PHE CE2 C Y N 220 PHE CZ C Y N 221 PHE OXT O N N 222 PHE H H N N 223 PHE H2 H N N 224 PHE HA H N N 225 PHE HB2 H N N 226 PHE HB3 H N N 227 PHE HD1 H N N 228 PHE HD2 H N N 229 PHE HE1 H N N 230 PHE HE2 H N N 231 PHE HZ H N N 232 PHE HXT H N N 233 THR N N N N 234 THR CA C N S 235 THR C C N N 236 THR O O N N 237 THR CB C N R 238 THR OG1 O N N 239 THR CG2 C N N 240 THR OXT O N N 241 THR H H N N 242 THR H2 H N N 243 THR HA H N N 244 THR HB H N N 245 THR HG1 H N N 246 THR HG21 H N N 247 THR HG22 H N N 248 THR HG23 H N N 249 THR HXT H N N 250 TRP N N N N 251 TRP CA C N S 252 TRP C C N N 253 TRP O O N N 254 TRP CB C N N 255 TRP CG C Y N 256 TRP CD1 C Y N 257 TRP CD2 C Y N 258 TRP NE1 N Y N 259 TRP CE2 C Y N 260 TRP CE3 C Y N 261 TRP CZ2 C Y N 262 TRP CZ3 C Y N 263 TRP CH2 C Y N 264 TRP OXT O N N 265 TRP H H N N 266 TRP H2 H N N 267 TRP HA H N N 268 TRP HB2 H N N 269 TRP HB3 H N N 270 TRP HD1 H N N 271 TRP HE1 H N N 272 TRP HE3 H N N 273 TRP HZ2 H N N 274 TRP HZ3 H N N 275 TRP HH2 H N N 276 TRP HXT H N N 277 TYR N N N N 278 TYR CA C N S 279 TYR C C N N 280 TYR O O N N 281 TYR CB C N N 282 TYR CG C Y N 283 TYR CD1 C Y N 284 TYR CD2 C Y N 285 TYR CE1 C Y N 286 TYR CE2 C Y N 287 TYR CZ C Y N 288 TYR OH O N N 289 TYR OXT O N N 290 TYR H H N N 291 TYR H2 H N N 292 TYR HA H N N 293 TYR HB2 H N N 294 TYR HB3 H N N 295 TYR HD1 H N N 296 TYR HD2 H N N 297 TYR HE1 H N N 298 TYR HE2 H N N 299 TYR HH H N N 300 TYR HXT H N N 301 VAL N N N N 302 VAL CA C N S 303 VAL C C N N 304 VAL O O N N 305 VAL CB C N N 306 VAL CG1 C N N 307 VAL CG2 C N N 308 VAL OXT O N N 309 VAL H H N N 310 VAL H2 H N N 311 VAL HA H N N 312 VAL HB H N N 313 VAL HG11 H N N 314 VAL HG12 H N N 315 VAL HG13 H N N 316 VAL HG21 H N N 317 VAL HG22 H N N 318 VAL HG23 H N N 319 VAL HXT H N N 320 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 FME N CN sing N N 44 FME N CA sing N N 45 FME N H sing N N 46 FME CN O1 doub N N 47 FME CN HCN sing N N 48 FME CA CB sing N N 49 FME CA C sing N N 50 FME CA HA sing N N 51 FME CB CG sing N N 52 FME CB HB2 sing N N 53 FME CB HB3 sing N N 54 FME CG SD sing N N 55 FME CG HG2 sing N N 56 FME CG HG3 sing N N 57 FME SD CE sing N N 58 FME CE HE1 sing N N 59 FME CE HE2 sing N N 60 FME CE HE3 sing N N 61 FME C O doub N N 62 FME C OXT sing N N 63 FME OXT HXT sing N N 64 GLN N CA sing N N 65 GLN N H sing N N 66 GLN N H2 sing N N 67 GLN CA C sing N N 68 GLN CA CB sing N N 69 GLN CA HA sing N N 70 GLN C O doub N N 71 GLN C OXT sing N N 72 GLN CB CG sing N N 73 GLN CB HB2 sing N N 74 GLN CB HB3 sing N N 75 GLN CG CD sing N N 76 GLN CG HG2 sing N N 77 GLN CG HG3 sing N N 78 GLN CD OE1 doub N N 79 GLN CD NE2 sing N N 80 GLN NE2 HE21 sing N N 81 GLN NE2 HE22 sing N N 82 GLN OXT HXT sing N N 83 GLU N CA sing N N 84 GLU N H sing N N 85 GLU N H2 sing N N 86 GLU CA C sing N N 87 GLU CA CB sing N N 88 GLU CA HA sing N N 89 GLU C O doub N N 90 GLU C OXT sing N N 91 GLU CB CG sing N N 92 GLU CB HB2 sing N N 93 GLU CB HB3 sing N N 94 GLU CG CD sing N N 95 GLU CG HG2 sing N N 96 GLU CG HG3 sing N N 97 GLU CD OE1 doub N N 98 GLU CD OE2 sing N N 99 GLU OE2 HE2 sing N N 100 GLU OXT HXT sing N N 101 GLY N CA sing N N 102 GLY N H sing N N 103 GLY N H2 sing N N 104 GLY CA C sing N N 105 GLY CA HA2 sing N N 106 GLY CA HA3 sing N N 107 GLY C O doub N N 108 GLY C OXT sing N N 109 GLY OXT HXT sing N N 110 HOH O H1 sing N N 111 HOH O H2 sing N N 112 ILE N CA sing N N 113 ILE N H sing N N 114 ILE N H2 sing N N 115 ILE CA C sing N N 116 ILE CA CB sing N N 117 ILE CA HA sing N N 118 ILE C O doub N N 119 ILE C OXT sing N N 120 ILE CB CG1 sing N N 121 ILE CB CG2 sing N N 122 ILE CB HB sing N N 123 ILE CG1 CD1 sing N N 124 ILE CG1 HG12 sing N N 125 ILE CG1 HG13 sing N N 126 ILE CG2 HG21 sing N N 127 ILE CG2 HG22 sing N N 128 ILE CG2 HG23 sing N N 129 ILE CD1 HD11 sing N N 130 ILE CD1 HD12 sing N N 131 ILE CD1 HD13 sing N N 132 ILE OXT HXT sing N N 133 LEU N CA sing N N 134 LEU N H sing N N 135 LEU N H2 sing N N 136 LEU CA C sing N N 137 LEU CA CB sing N N 138 LEU CA HA sing N N 139 LEU C O doub N N 140 LEU C OXT sing N N 141 LEU CB CG sing N N 142 LEU CB HB2 sing N N 143 LEU CB HB3 sing N N 144 LEU CG CD1 sing N N 145 LEU CG CD2 sing N N 146 LEU CG HG sing N N 147 LEU CD1 HD11 sing N N 148 LEU CD1 HD12 sing N N 149 LEU CD1 HD13 sing N N 150 LEU CD2 HD21 sing N N 151 LEU CD2 HD22 sing N N 152 LEU CD2 HD23 sing N N 153 LEU OXT HXT sing N N 154 LYS N CA sing N N 155 LYS N H sing N N 156 LYS N H2 sing N N 157 LYS CA C sing N N 158 LYS CA CB sing N N 159 LYS CA HA sing N N 160 LYS C O doub N N 161 LYS C OXT sing N N 162 LYS CB CG sing N N 163 LYS CB HB2 sing N N 164 LYS CB HB3 sing N N 165 LYS CG CD sing N N 166 LYS CG HG2 sing N N 167 LYS CG HG3 sing N N 168 LYS CD CE sing N N 169 LYS CD HD2 sing N N 170 LYS CD HD3 sing N N 171 LYS CE NZ sing N N 172 LYS CE HE2 sing N N 173 LYS CE HE3 sing N N 174 LYS NZ HZ1 sing N N 175 LYS NZ HZ2 sing N N 176 LYS NZ HZ3 sing N N 177 LYS OXT HXT sing N N 178 MET N CA sing N N 179 MET N H sing N N 180 MET N H2 sing N N 181 MET CA C sing N N 182 MET CA CB sing N N 183 MET CA HA sing N N 184 MET C O doub N N 185 MET C OXT sing N N 186 MET CB CG sing N N 187 MET CB HB2 sing N N 188 MET CB HB3 sing N N 189 MET CG SD sing N N 190 MET CG HG2 sing N N 191 MET CG HG3 sing N N 192 MET SD CE sing N N 193 MET CE HE1 sing N N 194 MET CE HE2 sing N N 195 MET CE HE3 sing N N 196 MET OXT HXT sing N N 197 PHE N CA sing N N 198 PHE N H sing N N 199 PHE N H2 sing N N 200 PHE CA C sing N N 201 PHE CA CB sing N N 202 PHE CA HA sing N N 203 PHE C O doub N N 204 PHE C OXT sing N N 205 PHE CB CG sing N N 206 PHE CB HB2 sing N N 207 PHE CB HB3 sing N N 208 PHE CG CD1 doub Y N 209 PHE CG CD2 sing Y N 210 PHE CD1 CE1 sing Y N 211 PHE CD1 HD1 sing N N 212 PHE CD2 CE2 doub Y N 213 PHE CD2 HD2 sing N N 214 PHE CE1 CZ doub Y N 215 PHE CE1 HE1 sing N N 216 PHE CE2 CZ sing Y N 217 PHE CE2 HE2 sing N N 218 PHE CZ HZ sing N N 219 PHE OXT HXT sing N N 220 THR N CA sing N N 221 THR N H sing N N 222 THR N H2 sing N N 223 THR CA C sing N N 224 THR CA CB sing N N 225 THR CA HA sing N N 226 THR C O doub N N 227 THR C OXT sing N N 228 THR CB OG1 sing N N 229 THR CB CG2 sing N N 230 THR CB HB sing N N 231 THR OG1 HG1 sing N N 232 THR CG2 HG21 sing N N 233 THR CG2 HG22 sing N N 234 THR CG2 HG23 sing N N 235 THR OXT HXT sing N N 236 TRP N CA sing N N 237 TRP N H sing N N 238 TRP N H2 sing N N 239 TRP CA C sing N N 240 TRP CA CB sing N N 241 TRP CA HA sing N N 242 TRP C O doub N N 243 TRP C OXT sing N N 244 TRP CB CG sing N N 245 TRP CB HB2 sing N N 246 TRP CB HB3 sing N N 247 TRP CG CD1 doub Y N 248 TRP CG CD2 sing Y N 249 TRP CD1 NE1 sing Y N 250 TRP CD1 HD1 sing N N 251 TRP CD2 CE2 doub Y N 252 TRP CD2 CE3 sing Y N 253 TRP NE1 CE2 sing Y N 254 TRP NE1 HE1 sing N N 255 TRP CE2 CZ2 sing Y N 256 TRP CE3 CZ3 doub Y N 257 TRP CE3 HE3 sing N N 258 TRP CZ2 CH2 doub Y N 259 TRP CZ2 HZ2 sing N N 260 TRP CZ3 CH2 sing Y N 261 TRP CZ3 HZ3 sing N N 262 TRP CH2 HH2 sing N N 263 TRP OXT HXT sing N N 264 TYR N CA sing N N 265 TYR N H sing N N 266 TYR N H2 sing N N 267 TYR CA C sing N N 268 TYR CA CB sing N N 269 TYR CA HA sing N N 270 TYR C O doub N N 271 TYR C OXT sing N N 272 TYR CB CG sing N N 273 TYR CB HB2 sing N N 274 TYR CB HB3 sing N N 275 TYR CG CD1 doub Y N 276 TYR CG CD2 sing Y N 277 TYR CD1 CE1 sing Y N 278 TYR CD1 HD1 sing N N 279 TYR CD2 CE2 doub Y N 280 TYR CD2 HD2 sing N N 281 TYR CE1 CZ doub Y N 282 TYR CE1 HE1 sing N N 283 TYR CE2 CZ sing Y N 284 TYR CE2 HE2 sing N N 285 TYR CZ OH sing N N 286 TYR OH HH sing N N 287 TYR OXT HXT sing N N 288 VAL N CA sing N N 289 VAL N H sing N N 290 VAL N H2 sing N N 291 VAL CA C sing N N 292 VAL CA CB sing N N 293 VAL CA HA sing N N 294 VAL C O doub N N 295 VAL C OXT sing N N 296 VAL CB CG1 sing N N 297 VAL CB CG2 sing N N 298 VAL CB HB sing N N 299 VAL CG1 HG11 sing N N 300 VAL CG1 HG12 sing N N 301 VAL CG1 HG13 sing N N 302 VAL CG2 HG21 sing N N 303 VAL CG2 HG22 sing N N 304 VAL CG2 HG23 sing N N 305 VAL OXT HXT sing N N 306 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PGA _pdbx_initial_refinement_model.details 'PDB ENTRY 1PGA' #