HEADER LIGASE 22-DEC-08 3FN1 TITLE E2-RING EXPANSION OF THE NEDD8 CASCADE CONFERS SPECIFICITY TO CULLIN TITLE 2 MODIFICATION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-ACTIVATING ENZYME E1C, RESIDUE 368-463; COMPND 5 SYNONYM: UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 3, UBIQUITIN- COMPND 6 ACTIVATING ENZYME 3, NEDD8-ACTIVATING ENZYME E1C, UBIQUITIN- COMPND 7 ACTIVATING ENZYME E1C; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: NEDD8-CONJUGATING ENZYME UBE2F; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: UBIQUITIN-CONJUGATING ENZYME E2 F, NEDD8 PROTEIN LIGASE COMPND 15 UBE2F, NEDD8 CARRIER PROTEIN UBE2F, NEDD8-CONJUGATING ENZYME 2; COMPND 16 EC: 6.3.2.-; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: E1C, UBA3, UBE1C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: NCE2, UBE2F; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS LIGASE, ATP-BINDING, CELL CYCLE, NUCLEOTIDE-BINDING, UBL CONJUGATION KEYWDS 2 PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR D.T.HUANG,O.AYRAULT,H.W.HUNT,A.M.TAHERBHOY,D.M.DUDA,D.C.SCOTT, AUTHOR 2 L.A.BORG,G.NEALE,P.J.MURRAY,M.F.ROUSSEL,B.A.SCHULMAN REVDAT 6 22-NOV-23 3FN1 1 REMARK REVDAT 5 06-SEP-23 3FN1 1 REMARK REVDAT 4 20-OCT-21 3FN1 1 SEQADV LINK REVDAT 3 24-JAN-18 3FN1 1 AUTHOR REVDAT 2 13-JUL-11 3FN1 1 VERSN REVDAT 1 17-MAR-09 3FN1 0 JRNL AUTH D.T.HUANG,O.AYRAULT,H.W.HUNT,A.M.TAHERBHOY,D.M.DUDA, JRNL AUTH 2 D.C.SCOTT,L.A.BORG,G.NEALE,P.J.MURRAY,M.F.ROUSSEL, JRNL AUTH 3 B.A.SCHULMAN JRNL TITL E2-RING EXPANSION OF THE NEDD8 CASCADE CONFERS SPECIFICITY JRNL TITL 2 TO CULLIN MODIFICATION JRNL REF MOL.CELL V. 33 483 2009 JRNL REFN ISSN 1097-2765 JRNL PMID 19250909 JRNL DOI 10.1016/J.MOLCEL.2009.01.011 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 12839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 798 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : 3.27000 REMARK 3 B33 (A**2) : -4.90000 REMARK 3 B12 (A**2) : 1.63000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.410 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2035 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2767 ; 1.080 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 5.486 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;39.633 ;24.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;16.534 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.109 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1526 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 906 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1362 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.316 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1298 ; 0.490 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2056 ; 0.786 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 824 ; 0.996 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 711 ; 1.604 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 184 REMARK 3 RESIDUE RANGE : A 350 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): -16.5251 5.2531 12.9471 REMARK 3 T TENSOR REMARK 3 T11: -0.0357 T22: 0.1009 REMARK 3 T33: -0.0374 T12: 0.0232 REMARK 3 T13: 0.0302 T23: -0.1056 REMARK 3 L TENSOR REMARK 3 L11: 0.9210 L22: 2.9917 REMARK 3 L33: 4.2818 L12: -0.5979 REMARK 3 L13: 0.3759 L23: -1.0830 REMARK 3 S TENSOR REMARK 3 S11: 0.1305 S12: -0.2258 S13: 0.0266 REMARK 3 S21: 0.2544 S22: -0.2016 S23: -0.0064 REMARK 3 S31: -0.2445 S32: -1.1046 S33: 0.0711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Y8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7-0.8 M NA CITRATE, 0.2 M NAC1, 0.1 REMARK 280 M BICINE, 5 MM DTT, PH 9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.91833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.83667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.91833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 141.83667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.91833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 141.83667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 70.91833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 141.83667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 345 REMARK 465 SER A 346 REMARK 465 SER A 347 REMARK 465 GLN A 348 REMARK 465 LEU A 349 REMARK 465 SER A 442 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 THR B 22 REMARK 465 ALA B 23 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 27 OG1 CG2 REMARK 470 ARG B 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 123 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 124 OG REMARK 470 ILE B 125 CG1 CG2 CD1 REMARK 470 ASP B 126 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 374 -70.62 -86.36 REMARK 500 SER A 378 69.27 -152.02 REMARK 500 ALA B 90 48.70 -95.42 REMARK 500 ASN B 92 -12.57 91.71 REMARK 500 SER B 124 -116.61 -91.95 REMARK 500 ASP B 126 84.29 -67.81 REMARK 500 THR B 148 -99.54 -122.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 3FN1 A 347 442 UNP Q8TBC4 UBA3_HUMAN 368 463 DBREF 3FN1 B 27 185 UNP Q969M7 UBE2F_HUMAN 21 185 SEQADV 3FN1 GLY A 345 UNP Q8TBC4 EXPRESSION TAG SEQADV 3FN1 SER A 346 UNP Q8TBC4 EXPRESSION TAG SEQADV 3FN1 MSE A 394 UNP Q8TBC4 LEU 415 ENGINEERED MUTATION SEQADV 3FN1 GLY B 19 UNP Q969M7 EXPRESSION TAG SEQADV 3FN1 SER B 20 UNP Q969M7 EXPRESSION TAG SEQRES 1 A 98 GLY SER SER GLN LEU PRO GLN ASN ILE GLN PHE SER PRO SEQRES 2 A 98 SER ALA LYS LEU GLN GLU VAL LEU ASP TYR LEU THR ASN SEQRES 3 A 98 SER ALA SER LEU GLN MSE LYS SER PRO ALA ILE THR ALA SEQRES 4 A 98 THR LEU GLU GLY LYS ASN ARG THR LEU TYR MSE GLN SER SEQRES 5 A 98 VAL THR SER ILE GLU GLU ARG THR ARG PRO ASN LEU SER SEQRES 6 A 98 LYS THR LEU LYS GLU LEU GLY LEU VAL ASP GLY GLN GLU SEQRES 7 A 98 LEU ALA VAL ALA ASP VAL THR THR PRO GLN THR VAL LEU SEQRES 8 A 98 PHE LYS LEU HIS PHE THR SER SEQRES 1 B 167 GLY SER ALA THR ALA SER ASP SER THR ARG ARG VAL SER SEQRES 2 B 167 VAL ARG ASP LYS LEU LEU VAL LYS GLU VAL ALA GLU LEU SEQRES 3 B 167 GLU ALA ASN LEU PRO CYS THR CYS LYS VAL HIS PHE PRO SEQRES 4 B 167 ASP PRO ASN LYS LEU HIS CYS PHE GLN LEU THR VAL THR SEQRES 5 B 167 PRO ASP GLU GLY TYR TYR GLN GLY GLY LYS PHE GLN PHE SEQRES 6 B 167 GLU THR GLU VAL PRO ASP ALA TYR ASN MET VAL PRO PRO SEQRES 7 B 167 LYS VAL LYS CYS LEU THR LYS ILE TRP HIS PRO ASN ILE SEQRES 8 B 167 THR GLU THR GLY GLU ILE CYS LEU SER LEU LEU ARG GLU SEQRES 9 B 167 HIS SER ILE ASP GLY THR GLY TRP ALA PRO THR ARG THR SEQRES 10 B 167 LEU LYS ASP VAL VAL TRP GLY LEU ASN SER LEU PHE THR SEQRES 11 B 167 ASP LEU LEU ASN PHE ASP ASP PRO LEU ASN ILE GLU ALA SEQRES 12 B 167 ALA GLU HIS HIS LEU ARG ASP LYS GLU ASP PHE ARG ASN SEQRES 13 B 167 LYS VAL ASP ASP TYR ILE LYS ARG TYR ALA ARG MODRES 3FN1 MSE A 376 MET SELENOMETHIONINE MODRES 3FN1 MSE A 394 MET SELENOMETHIONINE HET MSE A 376 8 HET MSE A 394 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 HOH *135(H2 O) HELIX 1 1 LYS A 360 SER A 371 1 12 HELIX 2 2 VAL A 397 ARG A 405 1 9 HELIX 3 3 PRO A 406 LYS A 410 5 5 HELIX 4 4 SER B 31 GLU B 45 1 15 HELIX 5 5 ALA B 46 LEU B 48 5 3 HELIX 6 6 LEU B 117 ARG B 121 5 5 HELIX 7 7 THR B 135 LEU B 146 1 12 HELIX 8 8 ASN B 158 ASP B 168 1 11 HELIX 9 9 ASP B 168 ALA B 184 1 17 SHEET 1 A 5 GLN A 351 PHE A 355 0 SHEET 2 A 5 VAL A 434 PHE A 440 1 O LYS A 437 N GLN A 351 SHEET 3 A 5 GLU A 422 ALA A 426 -1 N VAL A 425 O VAL A 434 SHEET 4 A 5 ALA A 380 LEU A 385 -1 N ALA A 380 O ALA A 426 SHEET 5 A 5 LYS A 388 MSE A 394 -1 O TYR A 393 N ILE A 381 SHEET 1 B 4 CYS B 52 HIS B 55 0 SHEET 2 B 4 CYS B 64 VAL B 69 -1 O GLN B 66 N HIS B 55 SHEET 3 B 4 PHE B 81 GLU B 86 -1 O PHE B 83 N LEU B 67 SHEET 4 B 4 LYS B 97 CYS B 100 -1 O LYS B 99 N GLU B 84 SSBOND 1 CYS B 50 CYS B 50 1555 4555 2.40 LINK C GLN A 375 N MSE A 376 1555 1555 1.33 LINK C MSE A 376 N LYS A 377 1555 1555 1.33 LINK C TYR A 393 N MSE A 394 1555 1555 1.33 LINK C MSE A 394 N GLN A 395 1555 1555 1.33 CRYST1 81.171 81.171 212.755 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012320 0.007113 0.000000 0.00000 SCALE2 0.000000 0.014226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004700 0.00000