HEADER IMMUNE SYSTEM 07-JAN-09 3FQW TITLE PHOSPHORYLATION OF SELF-PEPTIDES ALTERS HUMAN LEUKOCYTE ANTIGEN CLASS TITLE 2 I-RESTRICTED ANTIGEN PRESENTATION AND GENERATES TUMOR SPECIFIC TITLE 3 EPITOPES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS ALPHA1, ALPHA2, ALPHA3, UNP RESIDUES COMPND 5 25-299; COMPND 6 SYNONYM: MHC CLASS I ANTIGEN A*2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PEPTIDE 1097-1105 FROM INSULIN RECEPTOR SUBSTRATE 2 (IRS2): COMPND 14 RVASPTSGV; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 30; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET 30; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS IMMUNE SYSTEM, PHOSPHORYLATION, GLYCOPROTEIN, IMMUNE RESPONSE, KEYWDS 2 MEMBRANE, MHC I, PHOSPHOPROTEIN, POLYMORPHISM, TRANSMEMBRANE, UBL KEYWDS 3 CONJUGATION, DISEASE MUTATION, IMMUNOGLOBULIN DOMAIN, PYRROLIDONE KEYWDS 4 CARBOXYLIC ACID, SECRETED, CANCER, TCR, SELF-EPITOPE EXPDTA X-RAY DIFFRACTION AUTHOR J.PETERSEN,J.ROSSJOHN REVDAT 4 01-NOV-23 3FQW 1 REMARK LINK REVDAT 3 01-NOV-17 3FQW 1 REMARK REVDAT 2 10-MAR-09 3FQW 1 JRNL REVDAT 1 03-MAR-09 3FQW 0 JRNL AUTH J.PETERSEN,S.J.WURZBACHER,N.A.WILLIAMSON,S.H.RAMARATHINAM, JRNL AUTH 2 H.H.REID,A.K.NAIR,A.Y.ZHAO,R.NASTOVSKA,G.RUDGE,J.ROSSJOHN, JRNL AUTH 3 A.W.PURCELL JRNL TITL PHOSPHORYLATED SELF-PEPTIDES ALTER HUMAN LEUKOCYTE ANTIGEN JRNL TITL 2 CLASS I-RESTRICTED ANTIGEN PRESENTATION AND GENERATE JRNL TITL 3 TUMOR-SPECIFIC EPITOPES JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2776 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196958 JRNL DOI 10.1073/PNAS.0812901106 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 38009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6570 - 4.5220 0.96 3039 158 0.1620 0.1720 REMARK 3 2 4.5220 - 3.5930 0.97 2965 153 0.1360 0.1530 REMARK 3 3 3.5930 - 3.1400 0.97 2887 170 0.1640 0.2060 REMARK 3 4 3.1400 - 2.8530 0.96 2847 159 0.1700 0.1990 REMARK 3 5 2.8530 - 2.6490 0.96 2866 155 0.1760 0.2050 REMARK 3 6 2.6490 - 2.4930 0.95 2833 144 0.1810 0.2220 REMARK 3 7 2.4930 - 2.3680 0.95 2820 132 0.1710 0.2130 REMARK 3 8 2.3680 - 2.2650 0.95 2816 156 0.1660 0.1970 REMARK 3 9 2.2650 - 2.1780 0.94 2790 142 0.1600 0.2420 REMARK 3 10 2.1780 - 2.1030 0.94 2777 136 0.1700 0.2020 REMARK 3 11 2.1030 - 2.0370 0.94 2756 146 0.1720 0.1990 REMARK 3 12 2.0370 - 1.9790 0.89 2612 131 0.1840 0.2370 REMARK 3 13 1.9790 - 1.9270 0.72 2116 103 0.2040 0.2580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 42.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32100 REMARK 3 B22 (A**2) : 2.37100 REMARK 3 B33 (A**2) : -1.04900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3246 REMARK 3 ANGLE : 1.022 4414 REMARK 3 CHIRALITY : 0.075 452 REMARK 3 PLANARITY : 0.004 580 REMARK 3 DIHEDRAL : 15.210 1172 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1-181) OR CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 6.3075 -11.8449 -42.2309 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.0869 REMARK 3 T33: 0.1373 T12: -0.0040 REMARK 3 T13: -0.0127 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.2428 L22: 0.7527 REMARK 3 L33: 1.0578 L12: 0.0189 REMARK 3 L13: -0.2697 L23: 0.2242 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.1180 S13: -0.0141 REMARK 3 S21: -0.0457 S22: -0.0534 S23: 0.0962 REMARK 3 S31: -0.0261 S32: -0.0600 S33: 0.1201 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 182-275) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8371 14.5541 -20.8729 REMARK 3 T TENSOR REMARK 3 T11: 0.0360 T22: 0.0076 REMARK 3 T33: 0.0381 T12: -0.0307 REMARK 3 T13: 0.0153 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.6567 L22: 0.5765 REMARK 3 L33: 0.6182 L12: 0.5142 REMARK 3 L13: 0.1330 L23: 0.3218 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: 0.0752 S13: 0.0131 REMARK 3 S21: -0.1184 S22: -0.0351 S23: -0.0062 REMARK 3 S31: -0.0661 S32: 0.1620 S33: 0.0484 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 8.0478 -4.5285 -15.8416 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.1072 REMARK 3 T33: 0.1639 T12: 0.0190 REMARK 3 T13: 0.0103 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4937 L22: 0.1735 REMARK 3 L33: 1.1885 L12: 0.4792 REMARK 3 L13: -0.1501 L23: 0.2904 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.1093 S13: -0.0596 REMARK 3 S21: 0.2522 S22: -0.0272 S23: -0.0344 REMARK 3 S31: 0.1762 S32: 0.0111 S33: 0.0420 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.927 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1440 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VLL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG3350, 10MM CDCL2, 10MM COCL2, REMARK 280 0.1M NACL, PH7.4, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.99100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.64600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.68900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.64600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.99100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.68900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS A 197 CD CD A 276 3654 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 134.86 -172.60 REMARK 500 ASP A 29 -126.14 49.43 REMARK 500 TYR A 123 -70.27 -115.83 REMARK 500 HIS A 197 11.93 -147.68 REMARK 500 ASN B 20 -168.39 -166.13 REMARK 500 TRP B 59 -6.60 78.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 279 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 1 N REMARK 620 2 HIS A 3 NE2 114.4 REMARK 620 3 HOH A 333 O 130.9 105.4 REMARK 620 4 HOH A 507 O 93.4 87.8 116.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 277 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD1 REMARK 620 2 ASP A 30 OD2 54.5 REMARK 620 3 GLU A 212 OE1 137.2 82.7 REMARK 620 4 GLU A 212 OE2 163.9 134.9 54.1 REMARK 620 5 HOH A 402 O 91.8 89.3 88.4 100.7 REMARK 620 6 HOH A 413 O 89.3 141.8 132.4 83.2 78.8 REMARK 620 7 HOH A 414 O 84.9 94.3 98.7 81.5 172.4 94.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 278 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 191 O REMARK 620 2 HIS A 191 ND1 86.0 REMARK 620 3 HOH A 431 O 88.4 115.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 99 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 50 NE2 REMARK 620 2 HOH B 290 O 80.2 REMARK 620 3 HOH B 319 O 90.0 147.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 99 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FQN RELATED DB: PDB REMARK 900 RELATED ID: 3FQR RELATED DB: PDB REMARK 900 RELATED ID: 3FQT RELATED DB: PDB REMARK 900 RELATED ID: 3FQU RELATED DB: PDB REMARK 900 RELATED ID: 3FQX RELATED DB: PDB DBREF 3FQW A 1 275 UNP P01892 1A02_HUMAN 25 299 DBREF 3FQW B 1 98 UNP P61769 B2MG_HUMAN 22 119 DBREF 3FQW C 1 9 PDB 3FQW 3FQW 1 9 SEQRES 1 A 275 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 275 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 275 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 275 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 275 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 275 LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP LEU SEQRES 7 A 275 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 275 SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 275 SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 275 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 275 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR THR SEQRES 12 A 275 LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN LEU SEQRES 13 A 275 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 275 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 275 ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SER SEQRES 16 A 275 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER PHE SEQRES 17 A 275 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 275 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 275 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 275 VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 275 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 275 TRP GLU SEQRES 1 B 98 GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS PRO SEQRES 2 B 98 ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR VAL SEQRES 3 B 98 SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU LEU SEQRES 4 B 98 LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER ASP SEQRES 5 B 98 LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU TYR SEQRES 6 B 98 TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR ALA SEQRES 7 B 98 CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS ILE SEQRES 8 B 98 VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 ARG VAL ALA SER PRO THR SER GLY VAL HET CD A 276 1 HET CD A 277 1 HET CD A 278 1 HET CD A 279 1 HET CD A 280 1 HET CO B 99 1 HETNAM CD CADMIUM ION HETNAM CO COBALT (II) ION FORMUL 4 CD 5(CD 2+) FORMUL 9 CO CO 2+ FORMUL 10 HOH *337(H2 O) HELIX 1 1 ALA A 49 GLU A 53 5 5 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 HIS A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 GLN A 180 1 6 HELIX 7 7 GLN A 253 GLN A 255 5 3 SHEET 1 A 8 GLU A 46 PRO A 47 0 SHEET 2 A 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 A 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 A 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 A 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 A 8 PHE A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 A 8 LYS A 121 LEU A 126 -1 O LEU A 126 N HIS A 114 SHEET 8 A 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 B 4 LYS A 186 ALA A 193 0 SHEET 2 B 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 B 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 B 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 LYS A 186 ALA A 193 0 SHEET 2 C 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 C 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 C 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 D 4 GLU A 222 ASP A 223 0 SHEET 2 D 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 D 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 D 4 LEU A 270 ARG A 273 -1 O LEU A 272 N CYS A 259 SHEET 1 E 4 LYS B 5 SER B 10 0 SHEET 2 E 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 E 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 22 SHEET 4 E 4 GLU B 49 HIS B 50 -1 N GLU B 49 O TYR B 66 SHEET 1 F 4 LYS B 5 SER B 10 0 SHEET 2 F 4 ASN B 20 PHE B 29 -1 O ASN B 23 N TYR B 9 SHEET 3 F 4 PHE B 61 PHE B 69 -1 O THR B 67 N LEU B 22 SHEET 4 F 4 SER B 54 PHE B 55 -1 N SER B 54 O TYR B 62 SHEET 1 G 4 GLU B 43 ARG B 44 0 SHEET 2 G 4 GLU B 35 LYS B 40 -1 N LYS B 40 O GLU B 43 SHEET 3 G 4 TYR B 77 ASN B 82 -1 O ALA B 78 N LEU B 39 SHEET 4 G 4 LYS B 90 LYS B 93 -1 O LYS B 90 N VAL B 81 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.04 SSBOND 3 CYS B 24 CYS B 79 1555 1555 2.04 LINK N GLY A 1 CD CD A 279 1555 1555 2.34 LINK NE2 HIS A 3 CD CD A 279 1555 1555 2.38 LINK OD1 ASP A 30 CD CD A 277 1555 1555 2.34 LINK OD2 ASP A 30 CD CD A 277 1555 1555 2.46 LINK NE2 HIS A 145 CD CD A 276 1555 1555 2.40 LINK O HIS A 191 CD CD A 278 1555 1555 2.43 LINK ND1 HIS A 191 CD CD A 278 1555 1555 1.94 LINK OE1 GLU A 212 CD CD A 277 1555 1555 2.47 LINK OE2 GLU A 212 CD CD A 277 1555 1555 2.36 LINK CD CD A 277 O HOH A 402 1555 1555 2.25 LINK CD CD A 277 O HOH A 413 1555 1555 2.53 LINK CD CD A 277 O HOH A 414 1555 1555 2.29 LINK CD CD A 278 O HOH A 431 1555 1555 2.47 LINK CD CD A 279 O HOH A 333 1555 1555 2.45 LINK CD CD A 279 O HOH A 507 1555 1555 2.34 LINK CD CD A 280 O HOH A 303 1555 1555 2.58 LINK NE2 HIS B 50 CO CO B 99 1555 1555 2.26 LINK CO CO B 99 O HOH B 290 1555 1555 1.91 LINK CO CO B 99 O HOH B 319 1555 1555 2.27 CISPEP 1 TYR A 209 PRO A 210 0 3.22 CISPEP 2 HIS B 30 PRO B 31 0 0.48 SITE 1 AC1 6 HIS A 145 HIS A 197 GLU A 198 HOH A 309 SITE 2 AC1 6 HOH A 315 HOH A 316 SITE 1 AC2 5 ASP A 30 GLU A 212 HOH A 402 HOH A 413 SITE 2 AC2 5 HOH A 414 SITE 1 AC3 4 HIS A 151 GLU A 154 HIS A 191 HOH A 431 SITE 1 AC4 4 GLY A 1 HIS A 3 HOH A 333 HOH A 507 SITE 1 AC5 4 HIS A 151 GLU A 154 HOH A 303 HOH A 503 SITE 1 AC6 4 HIS B 50 HOH B 290 HOH B 318 HOH B 319 CRYST1 59.982 79.378 111.292 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008985 0.00000