data_3FU2 # _entry.id 3FU2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FU2 pdb_00003fu2 10.2210/pdb3fu2/pdb NDB UR0183 ? ? RCSB RCSB051042 ? ? WWPDB D_1000051042 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.value' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FU2 _pdbx_database_status.recvd_initial_deposition_date 2009-01-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3FU4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klein, D.J.' 1 'Edwards, T.E.' 2 ;Ferre-D'Amare, A.R. ; 3 # _citation.id primary _citation.title 'Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 16 _citation.page_first 343 _citation.page_last 344 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19234468 _citation.pdbx_database_id_DOI 10.1038/nsmb.1563 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klein, D.J.' 1 ? primary 'Edwards, T.E.' 2 ? primary ;Ferre-D'Amare, A.R. ; 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'PreQ1 riboswitch' 10835.524 3 ? ? ? ? 2 non-polymer syn 7-DEAZA-7-AMINOMETHYL-GUANINE 179.179 3 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 9 ? ? ? ? 4 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AGAGGUUCUAGCUACACCCUCUAUAAAAAACUAA _entity_poly.pdbx_seq_one_letter_code_can AGAGGUUCUAGCUACACCCUCUAUAAAAAACUAA _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 7-DEAZA-7-AMINOMETHYL-GUANINE PRF 3 'CALCIUM ION' CA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 G n 1 3 A n 1 4 G n 1 5 G n 1 6 U n 1 7 U n 1 8 C n 1 9 U n 1 10 A n 1 11 G n 1 12 C n 1 13 U n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 C n 1 19 C n 1 20 U n 1 21 C n 1 22 U n 1 23 A n 1 24 U n 1 25 A n 1 26 A n 1 27 A n 1 28 A n 1 29 A n 1 30 A n 1 31 C n 1 32 U n 1 33 A n 1 34 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized RNA corresponding to the natural sequence from Bacillus subtilis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 PRF non-polymer . 7-DEAZA-7-AMINOMETHYL-GUANINE ? 'C7 H9 N5 O' 179.179 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 ? ? ? A . n A 1 14 A 14 14 ? ? ? A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 U 32 32 32 U U A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n B 1 1 A 1 1 1 A A B . n B 1 2 G 2 2 2 G G B . n B 1 3 A 3 3 3 A A B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 U 6 6 6 U U B . n B 1 7 U 7 7 7 U U B . n B 1 8 C 8 8 8 C C B . n B 1 9 U 9 9 9 U U B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 C 12 12 12 C C B . n B 1 13 U 13 13 ? ? ? B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 C 18 18 18 C C B . n B 1 19 C 19 19 19 C C B . n B 1 20 U 20 20 20 U U B . n B 1 21 C 21 21 21 C C B . n B 1 22 U 22 22 22 U U B . n B 1 23 A 23 23 23 A A B . n B 1 24 U 24 24 24 U U B . n B 1 25 A 25 25 25 A A B . n B 1 26 A 26 26 26 A A B . n B 1 27 A 27 27 27 A A B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 A 30 30 30 A A B . n B 1 31 C 31 31 31 C C B . n B 1 32 U 32 32 32 U U B . n B 1 33 A 33 33 33 A A B . n B 1 34 A 34 34 34 A A B . n C 1 1 A 1 1 1 A A C . n C 1 2 G 2 2 2 G G C . n C 1 3 A 3 3 3 A A C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 U 7 7 7 U U C . n C 1 8 C 8 8 8 C C C . n C 1 9 U 9 9 9 U U C . n C 1 10 A 10 10 10 A A C . n C 1 11 G 11 11 11 G G C . n C 1 12 C 12 12 12 C C C . n C 1 13 U 13 13 ? ? ? C . n C 1 14 A 14 14 ? ? ? C . n C 1 15 C 15 15 15 C C C . n C 1 16 A 16 16 16 A A C . n C 1 17 C 17 17 17 C C C . n C 1 18 C 18 18 18 C C C . n C 1 19 C 19 19 19 C C C . n C 1 20 U 20 20 20 U U C . n C 1 21 C 21 21 21 C C C . n C 1 22 U 22 22 22 U U C . n C 1 23 A 23 23 23 A A C . n C 1 24 U 24 24 24 U U C . n C 1 25 A 25 25 25 A A C . n C 1 26 A 26 26 26 A A C . n C 1 27 A 27 27 27 A A C . n C 1 28 A 28 28 28 A A C . n C 1 29 A 29 29 29 A A C . n C 1 30 A 30 30 30 A A C . n C 1 31 C 31 31 31 C C C . n C 1 32 U 32 32 32 U U C . n C 1 33 A 33 33 33 A A C . n C 1 34 A 34 34 34 A A C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PRF 1 101 101 PRF PRF A . E 3 CA 1 901 901 CA CA A . F 3 CA 1 902 902 CA CA A . G 3 CA 1 906 906 CA CA A . H 3 CA 1 907 907 CA CA A . I 3 CA 1 908 908 CA CA A . J 2 PRF 1 101 101 PRF PRF B . K 3 CA 1 903 903 CA CA B . L 3 CA 1 909 909 CA CA B . M 2 PRF 1 101 101 PRF PRF C . N 3 CA 1 904 904 CA CA C . O 3 CA 1 905 905 CA CA C . P 4 HOH 1 803 803 HOH HOH A . P 4 HOH 2 809 809 HOH HOH A . P 4 HOH 3 810 810 HOH HOH A . P 4 HOH 4 811 811 HOH HOH A . P 4 HOH 5 812 812 HOH HOH A . P 4 HOH 6 822 822 HOH HOH A . P 4 HOH 7 823 823 HOH HOH A . P 4 HOH 8 828 828 HOH HOH A . Q 4 HOH 1 801 801 HOH HOH B . Q 4 HOH 2 802 802 HOH HOH B . Q 4 HOH 3 804 804 HOH HOH B . Q 4 HOH 4 805 805 HOH HOH B . Q 4 HOH 5 806 806 HOH HOH B . R 4 HOH 1 814 814 HOH HOH C . R 4 HOH 2 815 815 HOH HOH C . R 4 HOH 3 816 816 HOH HOH C . R 4 HOH 4 817 817 HOH HOH C . R 4 HOH 5 818 818 HOH HOH C . R 4 HOH 6 820 820 HOH HOH C . R 4 HOH 7 821 821 HOH HOH C . R 4 HOH 8 827 827 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A C 12 ? "C5'" ? A C 12 "C5'" 2 1 Y 1 A C 12 ? "C4'" ? A C 12 "C4'" 3 1 Y 1 A C 12 ? "O4'" ? A C 12 "O4'" 4 1 Y 1 A C 12 ? "C3'" ? A C 12 "C3'" 5 1 Y 1 A C 12 ? "O3'" ? A C 12 "O3'" 6 1 Y 1 A C 12 ? "C2'" ? A C 12 "C2'" 7 1 Y 1 A C 12 ? "O2'" ? A C 12 "O2'" 8 1 Y 1 A C 12 ? "C1'" ? A C 12 "C1'" 9 1 Y 1 A C 12 ? N1 ? A C 12 N1 10 1 Y 1 A C 12 ? C2 ? A C 12 C2 11 1 Y 1 A C 12 ? O2 ? A C 12 O2 12 1 Y 1 A C 12 ? N3 ? A C 12 N3 13 1 Y 1 A C 12 ? C4 ? A C 12 C4 14 1 Y 1 A C 12 ? N4 ? A C 12 N4 15 1 Y 1 A C 12 ? C5 ? A C 12 C5 16 1 Y 1 A C 12 ? C6 ? A C 12 C6 17 1 Y 1 B C 12 ? "C5'" ? B C 12 "C5'" 18 1 Y 1 B C 12 ? "C4'" ? B C 12 "C4'" 19 1 Y 1 B C 12 ? "O4'" ? B C 12 "O4'" 20 1 Y 1 B C 12 ? "C3'" ? B C 12 "C3'" 21 1 Y 1 B C 12 ? "O3'" ? B C 12 "O3'" 22 1 Y 1 B C 12 ? "C2'" ? B C 12 "C2'" 23 1 Y 1 B C 12 ? "O2'" ? B C 12 "O2'" 24 1 Y 1 B C 12 ? "C1'" ? B C 12 "C1'" 25 1 Y 1 B C 12 ? N1 ? B C 12 N1 26 1 Y 1 B C 12 ? C2 ? B C 12 C2 27 1 Y 1 B C 12 ? O2 ? B C 12 O2 28 1 Y 1 B C 12 ? N3 ? B C 12 N3 29 1 Y 1 B C 12 ? C4 ? B C 12 C4 30 1 Y 1 B C 12 ? N4 ? B C 12 N4 31 1 Y 1 B C 12 ? C5 ? B C 12 C5 32 1 Y 1 B C 12 ? C6 ? B C 12 C6 33 1 Y 1 B C 15 ? N1 ? B C 15 N1 34 1 Y 1 B C 15 ? C2 ? B C 15 C2 35 1 Y 1 B C 15 ? O2 ? B C 15 O2 36 1 Y 1 B C 15 ? N3 ? B C 15 N3 37 1 Y 1 B C 15 ? C4 ? B C 15 C4 38 1 Y 1 B C 15 ? N4 ? B C 15 N4 39 1 Y 1 B C 15 ? C5 ? B C 15 C5 40 1 Y 1 B C 15 ? C6 ? B C 15 C6 41 1 Y 1 C C 12 ? "C5'" ? C C 12 "C5'" 42 1 Y 1 C C 12 ? "C4'" ? C C 12 "C4'" 43 1 Y 1 C C 12 ? "O4'" ? C C 12 "O4'" 44 1 Y 1 C C 12 ? "C3'" ? C C 12 "C3'" 45 1 Y 1 C C 12 ? "O3'" ? C C 12 "O3'" 46 1 Y 1 C C 12 ? "C2'" ? C C 12 "C2'" 47 1 Y 1 C C 12 ? "O2'" ? C C 12 "O2'" 48 1 Y 1 C C 12 ? "C1'" ? C C 12 "C1'" 49 1 Y 1 C C 12 ? N1 ? C C 12 N1 50 1 Y 1 C C 12 ? C2 ? C C 12 C2 51 1 Y 1 C C 12 ? O2 ? C C 12 O2 52 1 Y 1 C C 12 ? N3 ? C C 12 N3 53 1 Y 1 C C 12 ? C4 ? C C 12 C4 54 1 Y 1 C C 12 ? N4 ? C C 12 N4 55 1 Y 1 C C 12 ? C5 ? C C 12 C5 56 1 Y 1 C C 12 ? C6 ? C C 12 C6 57 1 Y 1 C C 15 ? P ? C C 15 P 58 1 Y 1 C C 15 ? OP1 ? C C 15 OP1 59 1 Y 1 C C 15 ? OP2 ? C C 15 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3FU2 _cell.length_a 78.208 _cell.length_b 78.208 _cell.length_c 85.220 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FU2 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3FU2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '25% PEG 550 MME, 50 mM CaCl2, 100 mM Hepes-KOH pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 550 MME' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 Hepes-KOH ? ? ? 1 4 2 'PEG 550 MME' ? ? ? 1 5 2 CaCl2 ? ? ? 1 6 ? Hepes-KOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3FU2 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.85 _reflns.number_obs 7147 _reflns.number_all 7147 _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.126 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.85 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 68.3 _reflns_shell.Rmerge_I_obs 0.46 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 9.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FU2 _refine.ls_number_reflns_obs 7122 _refine.ls_number_reflns_all 7122 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 2.85 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2144 _refine.ls_R_factor_R_free 0.2669 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 390 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3FU2 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs 0.65 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free 0.76 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1988 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 2057 _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.32 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.053 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 3FU2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3FU2 _struct.title 'Cocrystal structure of a class-I preQ1 riboswitch' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FU2 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA; aptamer; riboswitch; queuosine; PreQ1, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 2 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 4 ? R N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3FU2 _struct_ref.pdbx_db_accession 3FU2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code AGAGGUUCUAGCUACACCCUCUAUAAAAAACUAA _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FU2 A 1 ? 34 ? 3FU2 1 ? 34 ? 1 34 2 1 3FU2 B 1 ? 34 ? 3FU2 1 ? 34 ? 1 34 3 1 3FU2 C 1 ? 34 ? 3FU2 1 ? 34 ? 1 34 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G,H,I,P 2 1 B,J,K,L,Q 3 1 C,M,N,O,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 7 OP2 ? ? ? 1_555 E CA . CA ? ? A U 7 A CA 901 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc2 metalc ? ? A U 9 OP2 ? ? ? 1_555 E CA . CA ? ? A U 9 A CA 901 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc3 metalc ? ? A C 21 OP2 ? ? ? 1_555 F CA . CA ? ? A C 21 A CA 902 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc4 metalc ? ? P HOH . O ? ? ? 1_555 E CA . CA ? ? A HOH 810 A CA 901 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc5 metalc ? ? P HOH . O ? ? ? 1_555 E CA . CA ? ? A HOH 811 A CA 901 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc6 metalc ? ? P HOH . O ? ? ? 1_555 E CA . CA ? ? A HOH 812 A CA 901 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc7 metalc ? ? F CA . CA ? ? ? 1_555 B C 21 OP2 ? ? A CA 902 B C 21 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc8 metalc ? ? F CA . CA ? ? ? 1_555 Q HOH . O ? ? A CA 902 B HOH 802 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc9 metalc ? ? B U 7 OP2 ? ? ? 1_555 K CA . CA ? ? B U 7 B CA 903 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc10 metalc ? ? B U 9 OP2 ? ? ? 1_555 K CA . CA ? ? B U 9 B CA 903 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc11 metalc ? ? Q HOH . O ? ? ? 1_555 K CA . CA ? ? B HOH 805 B CA 903 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc12 metalc ? ? Q HOH . O ? ? ? 1_555 K CA . CA ? ? B HOH 806 B CA 903 1_555 ? ? ? ? ? ? ? 2.826 ? ? metalc13 metalc ? ? C U 7 OP2 ? ? ? 1_555 N CA . CA ? ? C U 7 C CA 904 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc14 metalc ? ? C C 8 O2 ? ? ? 1_555 O CA . CA ? ? C C 8 C CA 905 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc15 metalc ? ? C U 9 OP2 ? ? ? 1_555 N CA . CA ? ? C U 9 C CA 904 1_555 ? ? ? ? ? ? ? 2.581 ? ? hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 1 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 1 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 2 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 N2 ? ? ? 1_555 A U 24 O4 ? ? A G 2 A U 24 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 3 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 3 A U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 3 N3 ? ? ? 1_555 A A 25 N6 ? ? A A 3 A A 25 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 4 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 4 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 4 A C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 5 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 28 N1 ? ? A G 5 A A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog17 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 28 N6 ? ? A G 5 A A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog18 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 29 N7 ? ? A U 6 A A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 6 A A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 6 A A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog21 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 30 N7 ? ? A U 7 A A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog22 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 30 N6 ? ? A U 7 A A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog23 hydrog ? ? A C 8 N4 ? ? ? 1_555 A A 34 N1 ? ? A C 8 A A 34 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 9 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 9 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 10 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 10 A U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A A 16 N1 ? ? A G 11 A A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog29 hydrog ? ? A G 11 N3 ? ? ? 1_555 A A 16 N6 ? ? A G 11 A A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog30 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 11 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 11 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 11 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 18 O2 ? ? ? 1_555 A A 29 N6 ? ? A C 18 A A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A C 19 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 19 A A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 26 N6 ? ? A U 20 A A 26 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog36 hydrog ? ? A C 21 O2 ? ? ? 1_555 A A 25 N6 ? ? A C 21 A A 25 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 23 N6 ? ? A U 22 A A 23 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog38 hydrog ? ? B A 1 N1 ? ? ? 1_555 B U 22 N3 ? ? B A 1 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B A 1 N6 ? ? ? 1_555 B U 22 O4 ? ? B A 1 B U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 2 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 2 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 2 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 2 N2 ? ? ? 1_555 B U 24 O4 ? ? B G 2 B U 24 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog44 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 20 N3 ? ? B A 3 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 20 O4 ? ? B A 3 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 19 N3 ? ? B G 4 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 19 O2 ? ? B G 4 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 19 N4 ? ? B G 4 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 18 N3 ? ? B G 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 18 O2 ? ? B G 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 18 N4 ? ? B G 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 5 N2 ? ? ? 1_555 B A 28 N1 ? ? B G 5 B A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog53 hydrog ? ? B G 5 N3 ? ? ? 1_555 B A 28 N6 ? ? B G 5 B A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog54 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 29 N7 ? ? B U 6 B A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog55 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 29 N6 ? ? B U 6 B A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog56 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 6 B A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog57 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 30 N7 ? ? B U 7 B A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog58 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 7 B A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog59 hydrog ? ? B U 7 O4 ? ? ? 1_555 B C 31 N4 ? ? B U 7 B C 31 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog60 hydrog ? ? B C 8 N4 ? ? ? 1_555 B A 34 N1 ? ? B C 8 B A 34 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog61 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 33 N1 ? ? B U 9 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 33 N6 ? ? B U 9 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B A 10 N1 ? ? ? 1_555 B U 32 N3 ? ? B A 10 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 10 N6 ? ? ? 1_555 B U 32 O4 ? ? B A 10 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 11 N2 ? ? ? 1_555 B A 16 N1 ? ? B G 11 B A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog66 hydrog ? ? B G 11 N3 ? ? ? 1_555 B A 16 N6 ? ? B G 11 B A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog67 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 31 N3 ? ? B G 11 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 31 O2 ? ? B G 11 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 31 N4 ? ? B G 11 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B A 14 N6 ? ? ? 1_555 B U 32 O2 ? ? B A 14 B U 32 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog71 hydrog ? ? B C 18 O2 ? ? ? 1_555 B A 29 N6 ? ? B C 18 B A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog72 hydrog ? ? B C 19 O2 ? ? ? 1_555 B A 27 N6 ? ? B C 19 B A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog73 hydrog ? ? B U 20 O2 ? ? ? 1_555 B A 26 N6 ? ? B U 20 B A 26 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog74 hydrog ? ? B C 21 O2 ? ? ? 1_555 B A 25 N6 ? ? B C 21 B A 25 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog75 hydrog ? ? C A 1 N1 ? ? ? 1_555 C U 22 N3 ? ? C A 1 C U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C A 1 N6 ? ? ? 1_555 C U 22 O4 ? ? C A 1 C U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C G 2 N1 ? ? ? 1_555 C C 21 N3 ? ? C G 2 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C G 2 N2 ? ? ? 1_555 C C 21 O2 ? ? C G 2 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 2 O6 ? ? ? 1_555 C C 21 N4 ? ? C G 2 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C A 3 N1 ? ? ? 1_555 C U 20 N3 ? ? C A 3 C U 20 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog81 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 19 N3 ? ? C G 4 C C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 19 O2 ? ? C G 4 C C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 19 N4 ? ? C G 4 C C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 18 N3 ? ? C G 5 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 18 O2 ? ? C G 5 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 18 N4 ? ? C G 5 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C G 5 N2 ? ? ? 1_555 C A 28 N1 ? ? C G 5 C A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog88 hydrog ? ? C G 5 N3 ? ? ? 1_555 C A 28 N6 ? ? C G 5 C A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog89 hydrog ? ? C U 6 N3 ? ? ? 1_555 C A 29 N7 ? ? C U 6 C A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog90 hydrog ? ? C U 6 O4 ? ? ? 1_555 C A 29 N6 ? ? C U 6 C A 29 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog91 hydrog ? ? C U 6 O4 ? ? ? 1_555 C A 30 N6 ? ? C U 6 C A 30 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog92 hydrog ? ? C U 7 N3 ? ? ? 1_555 C A 30 N7 ? ? C U 7 C A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog93 hydrog ? ? C U 7 O4 ? ? ? 1_555 C A 30 N6 ? ? C U 7 C A 30 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog94 hydrog ? ? C C 8 N4 ? ? ? 1_555 C A 34 N1 ? ? C C 8 C A 34 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog95 hydrog ? ? C U 9 N3 ? ? ? 1_555 C A 33 N1 ? ? C U 9 C A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C U 9 O4 ? ? ? 1_555 C A 33 N6 ? ? C U 9 C A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? C A 10 N1 ? ? ? 1_555 C U 32 N3 ? ? C A 10 C U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? C A 10 N6 ? ? ? 1_555 C U 32 O4 ? ? C A 10 C U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C G 11 N2 ? ? ? 1_555 C A 16 N1 ? ? C G 11 C A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog100 hydrog ? ? C G 11 N3 ? ? ? 1_555 C A 16 N6 ? ? C G 11 C A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog101 hydrog ? ? C G 11 N2 ? ? ? 1_555 C C 17 O2 ? ? C G 11 C C 17 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog102 hydrog ? ? C G 11 N1 ? ? ? 1_555 C C 31 N3 ? ? C G 11 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? C G 11 N2 ? ? ? 1_555 C C 31 O2 ? ? C G 11 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? C G 11 O6 ? ? ? 1_555 C C 31 N4 ? ? C G 11 C C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? C C 18 O2 ? ? ? 1_555 C A 29 N6 ? ? C C 18 C A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog106 hydrog ? ? C C 19 O2 ? ? ? 1_555 C A 27 N6 ? ? C C 19 C A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog107 hydrog ? ? C U 20 O2 ? ? ? 1_555 C A 26 N6 ? ? C U 20 C A 26 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog108 hydrog ? ? C C 21 O2 ? ? ? 1_555 C A 25 N6 ? ? C C 21 C A 25 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A U 7 ? A U 7 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 OP2 ? A U 9 ? A U 9 ? 1_555 75.5 ? 2 OP2 ? A U 7 ? A U 7 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 810 ? 1_555 136.3 ? 3 OP2 ? A U 9 ? A U 9 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 810 ? 1_555 90.6 ? 4 OP2 ? A U 7 ? A U 7 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 811 ? 1_555 69.1 ? 5 OP2 ? A U 9 ? A U 9 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 811 ? 1_555 75.5 ? 6 O ? P HOH . ? A HOH 810 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 811 ? 1_555 147.4 ? 7 OP2 ? A U 7 ? A U 7 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 812 ? 1_555 136.1 ? 8 OP2 ? A U 9 ? A U 9 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 812 ? 1_555 100.0 ? 9 O ? P HOH . ? A HOH 810 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 812 ? 1_555 86.5 ? 10 O ? P HOH . ? A HOH 811 ? 1_555 CA ? E CA . ? A CA 901 ? 1_555 O ? P HOH . ? A HOH 812 ? 1_555 67.6 ? 11 OP2 ? A C 21 ? A C 21 ? 1_555 CA ? F CA . ? A CA 902 ? 1_555 OP2 ? B C 21 ? B C 21 ? 1_555 169.7 ? 12 OP2 ? A C 21 ? A C 21 ? 1_555 CA ? F CA . ? A CA 902 ? 1_555 O ? Q HOH . ? B HOH 802 ? 1_555 100.6 ? 13 OP2 ? B C 21 ? B C 21 ? 1_555 CA ? F CA . ? A CA 902 ? 1_555 O ? Q HOH . ? B HOH 802 ? 1_555 84.9 ? 14 OP2 ? B U 7 ? B U 7 ? 1_555 CA ? K CA . ? B CA 903 ? 1_555 OP2 ? B U 9 ? B U 9 ? 1_555 82.2 ? 15 OP2 ? B U 7 ? B U 7 ? 1_555 CA ? K CA . ? B CA 903 ? 1_555 O ? Q HOH . ? B HOH 805 ? 1_555 129.7 ? 16 OP2 ? B U 9 ? B U 9 ? 1_555 CA ? K CA . ? B CA 903 ? 1_555 O ? Q HOH . ? B HOH 805 ? 1_555 119.8 ? 17 OP2 ? B U 7 ? B U 7 ? 1_555 CA ? K CA . ? B CA 903 ? 1_555 O ? Q HOH . ? B HOH 806 ? 1_555 52.5 ? 18 OP2 ? B U 9 ? B U 9 ? 1_555 CA ? K CA . ? B CA 903 ? 1_555 O ? Q HOH . ? B HOH 806 ? 1_555 68.1 ? 19 O ? Q HOH . ? B HOH 805 ? 1_555 CA ? K CA . ? B CA 903 ? 1_555 O ? Q HOH . ? B HOH 806 ? 1_555 171.2 ? 20 OP2 ? C U 7 ? C U 7 ? 1_555 CA ? N CA . ? C CA 904 ? 1_555 OP2 ? C U 9 ? C U 9 ? 1_555 73.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PRF 101 ? 8 'BINDING SITE FOR RESIDUE PRF A 101' AC2 Software A CA 901 ? 5 'BINDING SITE FOR RESIDUE CA A 901' AC3 Software A CA 902 ? 4 'BINDING SITE FOR RESIDUE CA A 902' AC4 Software A CA 907 ? 1 'BINDING SITE FOR RESIDUE CA A 907' AC5 Software B PRF 101 ? 8 'BINDING SITE FOR RESIDUE PRF B 101' AC6 Software B CA 903 ? 4 'BINDING SITE FOR RESIDUE CA B 903' AC7 Software C PRF 101 ? 8 'BINDING SITE FOR RESIDUE PRF C 101' AC8 Software C CA 904 ? 2 'BINDING SITE FOR RESIDUE CA C 904' AC9 Software C CA 905 ? 2 'BINDING SITE FOR RESIDUE CA C 905' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 8 U A 6 ? U A 6 . ? 1_555 ? 3 AC1 8 G A 11 ? G A 11 . ? 1_555 ? 4 AC1 8 C A 12 ? C A 12 . ? 1_555 ? 5 AC1 8 C A 17 ? C A 17 . ? 1_555 ? 6 AC1 8 C A 18 ? C A 18 . ? 1_555 ? 7 AC1 8 A A 30 ? A A 30 . ? 1_555 ? 8 AC1 8 C A 31 ? C A 31 . ? 1_555 ? 9 AC2 5 U A 7 ? U A 7 . ? 1_555 ? 10 AC2 5 U A 9 ? U A 9 . ? 1_555 ? 11 AC2 5 HOH P . ? HOH A 810 . ? 1_555 ? 12 AC2 5 HOH P . ? HOH A 811 . ? 1_555 ? 13 AC2 5 HOH P . ? HOH A 812 . ? 1_555 ? 14 AC3 4 C A 21 ? C A 21 . ? 1_555 ? 15 AC3 4 C B 21 ? C B 21 . ? 1_555 ? 16 AC3 4 HOH Q . ? HOH B 801 . ? 1_555 ? 17 AC3 4 HOH Q . ? HOH B 802 . ? 1_555 ? 18 AC4 1 C A 8 ? C A 8 . ? 6_554 ? 19 AC5 8 G B 5 ? G B 5 . ? 1_555 ? 20 AC5 8 U B 6 ? U B 6 . ? 1_555 ? 21 AC5 8 G B 11 ? G B 11 . ? 1_555 ? 22 AC5 8 C B 12 ? C B 12 . ? 1_555 ? 23 AC5 8 C B 17 ? C B 17 . ? 1_555 ? 24 AC5 8 C B 18 ? C B 18 . ? 1_555 ? 25 AC5 8 A B 30 ? A B 30 . ? 1_555 ? 26 AC5 8 C B 31 ? C B 31 . ? 1_555 ? 27 AC6 4 U B 7 ? U B 7 . ? 1_555 ? 28 AC6 4 U B 9 ? U B 9 . ? 1_555 ? 29 AC6 4 HOH Q . ? HOH B 805 . ? 1_555 ? 30 AC6 4 HOH Q . ? HOH B 806 . ? 1_555 ? 31 AC7 8 G C 5 ? G C 5 . ? 1_555 ? 32 AC7 8 U C 6 ? U C 6 . ? 1_555 ? 33 AC7 8 G C 11 ? G C 11 . ? 1_555 ? 34 AC7 8 C C 12 ? C C 12 . ? 1_555 ? 35 AC7 8 C C 17 ? C C 17 . ? 1_555 ? 36 AC7 8 C C 18 ? C C 18 . ? 1_555 ? 37 AC7 8 A C 30 ? A C 30 . ? 1_555 ? 38 AC7 8 C C 31 ? C C 31 . ? 1_555 ? 39 AC8 2 U C 7 ? U C 7 . ? 1_555 ? 40 AC8 2 U C 9 ? U C 9 . ? 1_555 ? 41 AC9 2 C B 8 ? C B 8 . ? 2_444 ? 42 AC9 2 C C 8 ? C C 8 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A A 23 ? ? "C3'" A A 23 ? ? "O3'" A A 23 ? ? 128.13 113.70 14.43 1.60 N 2 1 "O4'" A A 26 ? ? "C1'" A A 26 ? ? N9 A A 26 ? ? 113.15 108.50 4.65 0.70 N 3 1 "C2'" B A 23 ? ? "C3'" B A 23 ? ? "O3'" B A 23 ? ? 126.88 113.70 13.18 1.60 N 4 1 "C2'" B A 25 ? ? "C3'" B A 25 ? ? "O3'" B A 25 ? ? 124.87 113.70 11.17 1.60 N 5 1 "O4'" B A 26 ? ? "C1'" B A 26 ? ? N9 B A 26 ? ? 113.31 108.50 4.81 0.70 N 6 1 "C2'" B A 29 ? ? "C3'" B A 29 ? ? "O3'" B A 29 ? ? 123.74 113.70 10.04 1.60 N 7 1 "C2'" C A 23 ? ? "C3'" C A 23 ? ? "O3'" C A 23 ? ? 126.15 113.70 12.45 1.60 N 8 1 "C2'" C A 25 ? ? "C3'" C A 25 ? ? "O3'" C A 25 ? ? 124.75 113.70 11.05 1.60 N 9 1 "O4'" C A 26 ? ? "C1'" C A 26 ? ? N9 C A 26 ? ? 112.77 108.50 4.27 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id A _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 26 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.065 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CA _pdbx_struct_special_symmetry.auth_seq_id 906 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id CA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 13 ? A U 13 2 1 Y 1 A A 14 ? A A 14 3 1 Y 1 B U 13 ? B U 13 4 1 Y 1 C U 13 ? C U 13 5 1 Y 1 C A 14 ? C A 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CA CA CA N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 PRF N1 N N N 115 PRF C2 C N N 116 PRF N3 N N N 117 PRF C4 C Y N 118 PRF C5 C Y N 119 PRF C6 C N N 120 PRF O6 O N N 121 PRF C7 C Y N 122 PRF C10 C N N 123 PRF N11 N N N 124 PRF C8 C Y N 125 PRF N9 N Y N 126 PRF N2 N N N 127 PRF H91 H N N 128 PRF H101 H N N 129 PRF H102 H N N 130 PRF H111 H N N 131 PRF H112 H N N 132 PRF H81 H N N 133 PRF HN91 H N N 134 PRF HN21 H N N 135 PRF HN22 H N N 136 U OP3 O N N 137 U P P N N 138 U OP1 O N N 139 U OP2 O N N 140 U "O5'" O N N 141 U "C5'" C N N 142 U "C4'" C N R 143 U "O4'" O N N 144 U "C3'" C N S 145 U "O3'" O N N 146 U "C2'" C N R 147 U "O2'" O N N 148 U "C1'" C N R 149 U N1 N N N 150 U C2 C N N 151 U O2 O N N 152 U N3 N N N 153 U C4 C N N 154 U O4 O N N 155 U C5 C N N 156 U C6 C N N 157 U HOP3 H N N 158 U HOP2 H N N 159 U "H5'" H N N 160 U "H5''" H N N 161 U "H4'" H N N 162 U "H3'" H N N 163 U "HO3'" H N N 164 U "H2'" H N N 165 U "HO2'" H N N 166 U "H1'" H N N 167 U H3 H N N 168 U H5 H N N 169 U H6 H N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PRF N1 C2 sing N N 118 PRF N1 C6 sing N N 119 PRF N1 H91 sing N N 120 PRF C2 N3 doub N N 121 PRF C2 N2 sing N N 122 PRF N3 C4 sing N N 123 PRF C4 C5 doub Y N 124 PRF C4 N9 sing Y N 125 PRF C5 C6 sing N N 126 PRF C5 C7 sing Y N 127 PRF C6 O6 doub N N 128 PRF C7 C10 sing N N 129 PRF C7 C8 doub Y N 130 PRF C10 N11 sing N N 131 PRF C10 H101 sing N N 132 PRF C10 H102 sing N N 133 PRF N11 H111 sing N N 134 PRF N11 H112 sing N N 135 PRF C8 N9 sing Y N 136 PRF C8 H81 sing N N 137 PRF N9 HN91 sing N N 138 PRF N2 HN21 sing N N 139 PRF N2 HN22 sing N N 140 U OP3 P sing N N 141 U OP3 HOP3 sing N N 142 U P OP1 doub N N 143 U P OP2 sing N N 144 U P "O5'" sing N N 145 U OP2 HOP2 sing N N 146 U "O5'" "C5'" sing N N 147 U "C5'" "C4'" sing N N 148 U "C5'" "H5'" sing N N 149 U "C5'" "H5''" sing N N 150 U "C4'" "O4'" sing N N 151 U "C4'" "C3'" sing N N 152 U "C4'" "H4'" sing N N 153 U "O4'" "C1'" sing N N 154 U "C3'" "O3'" sing N N 155 U "C3'" "C2'" sing N N 156 U "C3'" "H3'" sing N N 157 U "O3'" "HO3'" sing N N 158 U "C2'" "O2'" sing N N 159 U "C2'" "C1'" sing N N 160 U "C2'" "H2'" sing N N 161 U "O2'" "HO2'" sing N N 162 U "C1'" N1 sing N N 163 U "C1'" "H1'" sing N N 164 U N1 C2 sing N N 165 U N1 C6 sing N N 166 U C2 O2 doub N N 167 U C2 N3 sing N N 168 U N3 C4 sing N N 169 U N3 H3 sing N N 170 U C4 O4 doub N N 171 U C4 C5 sing N N 172 U C5 C6 doub N N 173 U C5 H5 sing N N 174 U C6 H6 sing N N 175 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3FU2 'double helix' 3FU2 'a-form double helix' 3FU2 'mismatched base pair' 3FU2 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 A U 22 1_555 -0.634 -0.187 -0.211 -15.072 -3.075 -1.332 1 A_A1:U22_A A 1 ? A 22 ? 20 1 1 A G 2 1_555 A C 21 1_555 0.014 -0.038 -0.029 -12.314 -15.983 1.351 2 A_G2:C21_A A 2 ? A 21 ? 19 1 1 A A 3 1_555 A U 20 1_555 0.126 -0.149 0.414 2.145 -11.184 4.816 3 A_A3:U20_A A 3 ? A 20 ? 20 1 1 A G 4 1_555 A C 19 1_555 0.158 0.099 0.344 7.548 -8.377 5.972 4 A_G4:C19_A A 4 ? A 19 ? 19 1 1 A G 5 1_555 A C 18 1_555 -0.174 -0.066 -0.180 1.690 -9.852 2.874 5 A_G5:C18_A A 5 ? A 18 ? 19 1 1 A U 6 1_555 A A 29 1_555 -0.365 3.365 1.505 -12.489 -16.976 -69.048 6 A_U6:A29_A A 6 ? A 29 ? 23 3 1 A A 30 1_555 A U 7 1_555 1.117 -3.812 -0.506 10.745 2.453 77.100 7 A_A30:U7_A A 30 ? A 7 ? 23 3 1 A C 31 1_555 A G 11 1_555 0.253 -0.185 0.259 6.602 -26.322 0.578 8 A_C31:G11_A A 31 ? A 11 ? 19 1 1 A U 32 1_555 A A 10 1_555 -0.492 -0.190 0.935 6.625 -17.792 9.153 9 A_U32:A10_A A 32 ? A 10 ? 20 1 1 A A 33 1_555 A U 9 1_555 -0.205 -0.078 -0.207 -4.321 -28.182 6.692 10 A_A33:U9_A A 33 ? A 9 ? 20 1 1 A A 34 1_555 A C 8 1_555 2.695 0.447 -0.576 -16.141 -17.667 -1.572 11 A_A34:C8_A A 34 ? A 8 ? ? ? 1 B A 1 1_555 B U 22 1_555 -0.077 -0.010 -0.549 -23.487 0.282 -0.661 12 B_A1:U22_B B 1 ? B 22 ? 20 1 1 B G 2 1_555 B C 21 1_555 0.217 -0.074 -0.024 -13.330 -16.072 6.101 13 B_G2:C21_B B 2 ? B 21 ? 19 1 1 B A 3 1_555 B U 20 1_555 0.287 -0.164 0.414 -1.229 -8.448 3.887 14 B_A3:U20_B B 3 ? B 20 ? 20 1 1 B G 4 1_555 B C 19 1_555 0.207 -0.016 0.147 1.580 -3.161 -1.032 15 B_G4:C19_B B 4 ? B 19 ? 19 1 1 B G 5 1_555 B C 18 1_555 -0.537 -0.204 -0.128 3.154 -6.287 0.463 16 B_G5:C18_B B 5 ? B 18 ? 19 1 1 B U 6 1_555 B A 29 1_555 -0.206 2.852 1.241 -11.102 -18.522 -72.503 17 B_U6:A29_B B 6 ? B 29 ? 23 3 1 B A 30 1_555 B U 7 1_555 0.370 -3.456 -1.635 8.041 -11.376 69.185 18 B_A30:U7_B B 30 ? B 7 ? 23 3 1 B C 31 1_555 B G 11 1_555 0.394 -0.258 0.133 6.697 -25.344 -0.648 19 B_C31:G11_B B 31 ? B 11 ? 19 1 1 B U 32 1_555 B A 10 1_555 -0.239 -0.255 0.485 3.237 -16.601 2.990 20 B_U32:A10_B B 32 ? B 10 ? 20 1 1 B A 33 1_555 B U 9 1_555 0.173 -0.064 0.102 -1.663 -29.197 3.373 21 B_A33:U9_B B 33 ? B 9 ? 20 1 1 B A 34 1_555 B C 8 1_555 3.178 0.064 -0.087 -2.855 -19.695 -6.290 22 B_A34:C8_B B 34 ? B 8 ? ? ? 1 C A 1 1_555 C U 22 1_555 -0.336 0.024 0.150 -5.588 -8.357 -1.196 23 C_A1:U22_C C 1 ? C 22 ? 20 1 1 C G 2 1_555 C C 21 1_555 0.224 -0.158 0.557 0.611 -25.986 2.973 24 C_G2:C21_C C 2 ? C 21 ? 19 1 1 C A 3 1_555 C U 20 1_555 -0.184 0.090 0.588 -1.613 -10.145 9.968 25 C_A3:U20_C C 3 ? C 20 ? ? 1 1 C G 4 1_555 C C 19 1_555 -0.329 -0.248 0.047 3.825 -8.513 -0.940 26 C_G4:C19_C C 4 ? C 19 ? 19 1 1 C G 5 1_555 C C 18 1_555 -0.621 -0.061 0.122 7.409 -9.694 -0.209 27 C_G5:C18_C C 5 ? C 18 ? 19 1 1 C U 6 1_555 C A 29 1_555 -0.511 3.210 1.272 -10.997 -12.156 -73.068 28 C_U6:A29_C C 6 ? C 29 ? 23 3 1 C A 30 1_555 C U 7 1_555 0.738 -3.740 -0.114 3.586 8.683 75.138 29 C_A30:U7_C C 30 ? C 7 ? 23 3 1 C C 31 1_555 C G 11 1_555 0.705 -0.161 0.079 11.315 -29.026 0.603 30 C_C31:G11_C C 31 ? C 11 ? 19 1 1 C U 32 1_555 C A 10 1_555 -0.265 -0.360 0.461 -2.526 -16.607 -0.130 31 C_U32:A10_C C 32 ? C 10 ? 20 1 1 C A 33 1_555 C U 9 1_555 0.188 -0.001 -0.048 1.694 -20.915 -0.564 32 C_A33:U9_C C 33 ? C 9 ? 20 1 1 C A 34 1_555 C C 8 1_555 2.482 0.381 -0.756 -12.399 -29.648 -14.259 33 C_A34:C8_C C 34 ? C 8 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 1 1_555 A U 22 1_555 A G 2 1_555 A C 21 1_555 0.275 -1.361 3.217 -1.406 11.655 35.247 -3.574 -0.605 2.638 18.621 2.246 37.092 1 AA_A1G2:C21U22_AA A 1 ? A 22 ? A 2 ? A 21 ? 1 A G 2 1_555 A C 21 1_555 A A 3 1_555 A U 20 1_555 0.000 -1.097 2.750 -0.733 -2.781 33.014 -1.523 -0.105 2.830 -4.882 1.288 33.136 2 AA_G2A3:U20C21_AA A 2 ? A 21 ? A 3 ? A 20 ? 1 A A 3 1_555 A U 20 1_555 A G 4 1_555 A C 19 1_555 0.424 -1.477 3.181 2.552 3.566 29.041 -3.642 -0.315 3.007 7.060 -5.053 29.363 3 AA_A3G4:C19U20_AA A 3 ? A 20 ? A 4 ? A 19 ? 1 A G 4 1_555 A C 19 1_555 A G 5 1_555 A C 18 1_555 0.039 -1.730 3.408 6.568 6.444 30.995 -4.244 1.086 2.945 11.737 -11.963 32.299 4 AA_G4G5:C18C19_AA A 4 ? A 19 ? A 5 ? A 18 ? 1 A G 5 1_555 A C 18 1_555 A U 6 1_555 A A 29 1_555 -6.595 -0.967 1.273 8.718 4.834 19.396 -2.430 17.217 -1.691 13.272 -23.938 21.786 5 AA_G5U6:A29C18_AA A 5 ? A 18 ? A 6 ? A 29 ? 1 A U 6 1_555 A A 29 1_555 A A 30 1_555 A U 7 1_555 0.281 -0.533 2.853 10.054 1.063 32.646 -1.058 0.930 2.797 1.837 -17.374 34.135 6 AA_U6A30:U7A29_AA A 6 ? A 29 ? A 30 ? A 7 ? 1 A A 30 1_555 A U 7 1_555 A C 31 1_555 A G 11 1_555 0.981 -3.017 2.893 -9.166 10.048 84.111 -2.425 -0.901 2.492 7.457 6.803 85.001 7 AA_A30C31:G11U7_AA A 30 ? A 7 ? A 31 ? A 11 ? 1 A C 31 1_555 A G 11 1_555 A U 32 1_555 A A 10 1_555 0.225 -1.359 3.189 -12.448 6.936 33.083 -3.119 -2.010 2.612 11.538 20.705 35.943 8 AA_C31U32:A10G11_AA A 31 ? A 11 ? A 32 ? A 10 ? 1 A U 32 1_555 A A 10 1_555 A A 33 1_555 A U 9 1_555 -0.337 -1.390 3.028 7.459 19.373 34.115 -3.878 1.203 1.893 29.846 -11.491 39.774 9 AA_U32A33:U9A10_AA A 32 ? A 10 ? A 33 ? A 9 ? 1 A A 33 1_555 A U 9 1_555 A A 34 1_555 A C 8 1_555 -0.522 -0.331 3.543 3.168 6.826 48.296 -0.957 0.889 3.430 8.284 -3.844 48.844 10 AA_A33A34:C8U9_AA A 33 ? A 9 ? A 34 ? A 8 ? 1 B A 1 1_555 B U 22 1_555 B G 2 1_555 B C 21 1_555 0.306 -1.271 3.064 -0.293 8.611 32.562 -3.443 -0.571 2.648 15.032 0.512 33.652 11 BB_A1G2:C21U22_BB B 1 ? B 22 ? B 2 ? B 21 ? 1 B G 2 1_555 B C 21 1_555 B A 3 1_555 B U 20 1_555 -0.050 -1.210 2.829 -1.833 -1.328 31.009 -2.035 -0.213 2.875 -2.480 3.423 31.090 12 BB_G2A3:U20C21_BB B 2 ? B 21 ? B 3 ? B 20 ? 1 B A 3 1_555 B U 20 1_555 B G 4 1_555 B C 19 1_555 0.298 -2.075 3.274 3.611 0.289 25.796 -4.683 0.332 3.261 0.642 -8.037 26.045 13 BB_A3G4:C19U20_BB B 3 ? B 20 ? B 4 ? B 19 ? 1 B G 4 1_555 B C 19 1_555 B G 5 1_555 B C 18 1_555 -0.046 -2.050 3.192 4.457 4.643 27.748 -5.150 1.038 2.778 9.519 -9.139 28.470 14 BB_G4G5:C18C19_BB B 4 ? B 19 ? B 5 ? B 18 ? 1 B G 5 1_555 B C 18 1_555 B U 6 1_555 B A 29 1_555 -6.284 -0.471 1.436 9.395 3.869 28.387 -1.007 12.339 -0.624 7.589 -18.428 30.116 15 BB_G5U6:A29C18_BB B 5 ? B 18 ? B 6 ? B 29 ? 1 B U 6 1_555 B A 29 1_555 B A 30 1_555 B U 7 1_555 -0.187 -1.044 3.328 4.917 10.697 28.891 -3.905 1.248 2.712 20.404 -9.379 31.150 16 BB_U6A30:U7A29_BB B 6 ? B 29 ? B 30 ? B 7 ? 1 B A 30 1_555 B U 7 1_555 B C 31 1_555 B G 11 1_555 0.693 -2.478 2.567 -12.750 0.891 78.034 -1.968 -0.813 2.426 0.704 10.063 78.908 17 BB_A30C31:G11U7_BB B 30 ? B 7 ? B 31 ? B 11 ? 1 B C 31 1_555 B G 11 1_555 B U 32 1_555 B A 10 1_555 -0.081 -1.233 3.256 -6.327 6.361 36.302 -2.736 -0.681 2.977 10.023 9.969 37.358 18 BB_C31U32:A10G11_BB B 31 ? B 11 ? B 32 ? B 10 ? 1 B U 32 1_555 B A 10 1_555 B A 33 1_555 B U 9 1_555 -0.166 -1.439 3.134 3.861 15.058 31.962 -4.273 0.762 2.221 25.544 -6.550 35.453 19 BB_U32A33:U9A10_BB B 32 ? B 10 ? B 33 ? B 9 ? 1 B A 33 1_555 B U 9 1_555 B A 34 1_555 B C 8 1_555 -0.397 -0.604 3.419 7.280 9.686 49.848 -1.383 0.973 3.174 11.300 -8.493 51.208 20 BB_A33A34:C8U9_BB B 33 ? B 9 ? B 34 ? B 8 ? 1 C A 1 1_555 C U 22 1_555 C G 2 1_555 C C 21 1_555 0.468 -1.099 2.929 -1.218 11.208 40.394 -2.535 -0.764 2.535 15.861 1.724 41.875 21 CC_A1G2:C21U22_CC C 1 ? C 22 ? C 2 ? C 21 ? 1 C G 2 1_555 C C 21 1_555 C A 3 1_555 C U 20 1_555 0.551 -1.192 3.092 0.299 2.972 28.619 -3.016 -1.047 2.961 5.992 -0.602 28.771 22 CC_G2A3:U20C21_CC C 2 ? C 21 ? C 3 ? C 20 ? 1 C A 3 1_555 C U 20 1_555 C G 4 1_555 C C 19 1_555 -0.170 -1.651 3.226 5.827 3.878 28.526 -4.049 1.526 2.890 7.725 -11.606 29.355 23 CC_A3G4:C19U20_CC C 3 ? C 20 ? C 4 ? C 19 ? 1 C G 4 1_555 C C 19 1_555 C G 5 1_555 C C 18 1_555 0.242 -1.845 3.226 1.484 2.782 31.223 -3.915 -0.180 3.062 5.152 -2.748 31.378 24 CC_G4G5:C18C19_CC C 4 ? C 19 ? C 5 ? C 18 ? 1 C G 5 1_555 C C 18 1_555 C U 6 1_555 C A 29 1_555 -6.679 -0.716 1.473 11.168 9.107 24.625 -1.437 13.556 -1.527 19.376 -23.762 28.475 25 CC_G5U6:A29C18_CC C 5 ? C 18 ? C 6 ? C 29 ? 1 C U 6 1_555 C A 29 1_555 C A 30 1_555 C U 7 1_555 0.301 -0.643 2.852 11.476 -3.938 29.582 -0.522 1.337 2.831 -7.337 -21.378 31.922 26 CC_U6A30:U7A29_CC C 6 ? C 29 ? C 30 ? C 7 ? 1 C A 30 1_555 C U 7 1_555 C C 31 1_555 C G 11 1_555 0.960 -3.056 2.838 -6.519 13.627 85.974 -2.458 -0.812 2.368 9.927 4.749 87.035 27 CC_A30C31:G11U7_CC C 30 ? C 7 ? C 31 ? C 11 ? 1 C C 31 1_555 C G 11 1_555 C U 32 1_555 C A 10 1_555 -0.187 -1.490 3.511 -7.530 9.784 30.754 -4.295 -0.962 2.881 17.586 13.533 33.084 28 CC_C31U32:A10G11_CC C 31 ? C 11 ? C 32 ? C 10 ? 1 C U 32 1_555 C A 10 1_555 C A 33 1_555 C U 9 1_555 -0.591 -1.344 2.828 1.717 13.357 36.928 -3.269 1.044 2.202 20.278 -2.607 39.226 29 CC_U32A33:U9A10_CC C 32 ? C 10 ? C 33 ? C 9 ? 1 C A 33 1_555 C U 9 1_555 C A 34 1_555 C C 8 1_555 -0.486 -0.877 3.788 9.809 10.394 42.903 -2.184 1.615 3.318 13.762 -12.987 45.114 30 CC_A33A34:C8U9_CC C 33 ? C 9 ? C 34 ? C 8 ? # _atom_sites.entry_id 3FU2 _atom_sites.fract_transf_matrix[1][1] 0.012786 _atom_sites.fract_transf_matrix[1][2] 0.007382 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014764 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011734 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P # loop_