data_3FWZ # _entry.id 3FWZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FWZ RCSB RCSB051146 WWPDB D_1000051146 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC62901.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FWZ _pdbx_database_status.recvd_initial_deposition_date 2009-01-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Bigelow, L.' 2 'Buck, K.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of TrkA-N domain of inner membrane protein ybaL from Escherichia coli' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Bigelow, L.' 2 primary 'Buck, K.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3FWZ _cell.length_a 34.801 _cell.length_b 53.071 _cell.length_c 72.537 _cell.angle_alpha 90.00 _cell.angle_beta 97.82 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FWZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Inner membrane protein ybaL' 15507.218 2 ? ? 'domain TrkA-N, residues 414-550' ? 2 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 201 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEI(MSE)QLAHLECAKWLI LTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVV(MSE)GEREIART(MSE)LELLETP ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP NGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC62901.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 VAL n 1 5 ASP n 1 6 ILE n 1 7 CYS n 1 8 ASN n 1 9 HIS n 1 10 ALA n 1 11 LEU n 1 12 LEU n 1 13 VAL n 1 14 GLY n 1 15 TYR n 1 16 GLY n 1 17 ARG n 1 18 VAL n 1 19 GLY n 1 20 SER n 1 21 LEU n 1 22 LEU n 1 23 GLY n 1 24 GLU n 1 25 LYS n 1 26 LEU n 1 27 LEU n 1 28 ALA n 1 29 SER n 1 30 ASP n 1 31 ILE n 1 32 PRO n 1 33 LEU n 1 34 VAL n 1 35 VAL n 1 36 ILE n 1 37 GLU n 1 38 THR n 1 39 SER n 1 40 ARG n 1 41 THR n 1 42 ARG n 1 43 VAL n 1 44 ASP n 1 45 GLU n 1 46 LEU n 1 47 ARG n 1 48 GLU n 1 49 ARG n 1 50 GLY n 1 51 VAL n 1 52 ARG n 1 53 ALA n 1 54 VAL n 1 55 LEU n 1 56 GLY n 1 57 ASN n 1 58 ALA n 1 59 ALA n 1 60 ASN n 1 61 GLU n 1 62 GLU n 1 63 ILE n 1 64 MSE n 1 65 GLN n 1 66 LEU n 1 67 ALA n 1 68 HIS n 1 69 LEU n 1 70 GLU n 1 71 CYS n 1 72 ALA n 1 73 LYS n 1 74 TRP n 1 75 LEU n 1 76 ILE n 1 77 LEU n 1 78 THR n 1 79 ILE n 1 80 PRO n 1 81 ASN n 1 82 GLY n 1 83 TYR n 1 84 GLU n 1 85 ALA n 1 86 GLY n 1 87 GLU n 1 88 ILE n 1 89 VAL n 1 90 ALA n 1 91 SER n 1 92 ALA n 1 93 ARG n 1 94 ALA n 1 95 LYS n 1 96 ASN n 1 97 PRO n 1 98 ASP n 1 99 ILE n 1 100 GLU n 1 101 ILE n 1 102 ILE n 1 103 ALA n 1 104 ARG n 1 105 ALA n 1 106 HIS n 1 107 TYR n 1 108 ASP n 1 109 ASP n 1 110 GLU n 1 111 VAL n 1 112 ALA n 1 113 TYR n 1 114 ILE n 1 115 THR n 1 116 GLU n 1 117 ARG n 1 118 GLY n 1 119 ALA n 1 120 ASN n 1 121 GLN n 1 122 VAL n 1 123 VAL n 1 124 MSE n 1 125 GLY n 1 126 GLU n 1 127 ARG n 1 128 GLU n 1 129 ILE n 1 130 ALA n 1 131 ARG n 1 132 THR n 1 133 MSE n 1 134 LEU n 1 135 GLU n 1 136 LEU n 1 137 LEU n 1 138 GLU n 1 139 THR n 1 140 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b0478, Escherichia coli CFT073, JW0467, ybaL, ylaA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli K-12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YBAL_ECOLI _struct_ref.pdbx_db_accession P39830 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGY EAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETP ; _struct_ref.pdbx_align_begin 414 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FWZ A 4 ? 140 ? P39830 414 ? 550 ? 414 550 2 1 3FWZ B 4 ? 140 ? P39830 414 ? 550 ? 414 550 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FWZ SER A 1 ? UNP P39830 ? ? 'expression tag' 411 1 1 3FWZ ASN A 2 ? UNP P39830 ? ? 'expression tag' 412 2 1 3FWZ ALA A 3 ? UNP P39830 ? ? 'expression tag' 413 3 2 3FWZ SER B 1 ? UNP P39830 ? ? 'expression tag' 411 4 2 3FWZ ASN B 2 ? UNP P39830 ? ? 'expression tag' 412 5 2 3FWZ ALA B 3 ? UNP P39830 ? ? 'expression tag' 413 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FWZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '0.2 M MgCl2, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM Q315r' _diffrn_detector.pdbx_collection_date 2008-12-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97926 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97926 # _reflns.entry_id 3FWZ _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.79 _reflns.number_obs 24652 _reflns.number_all 24693 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 47.0 _reflns.B_iso_Wilson_estimate 20.6 _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.82 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.196 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.65 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 620 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FWZ _refine.ls_number_reflns_obs 24633 _refine.ls_number_reflns_all 24633 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 1.79 _refine.ls_percent_reflns_obs 98.44 _refine.ls_R_factor_obs 0.16968 _refine.ls_R_factor_all 0.16968 _refine.ls_R_factor_R_work 0.16787 _refine.ls_R_factor_R_free 0.20159 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1259 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 17.469 _refine.aniso_B[1][1] 1.16 _refine.aniso_B[2][2] -0.77 _refine.aniso_B[3][3] -0.35 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.13 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.129 _refine.pdbx_overall_ESU_R_Free 0.118 _refine.overall_SU_ML 0.072 _refine.overall_SU_B 4.510 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2100 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 2348 _refine_hist.d_res_high 1.79 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 2252 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.470 2.004 ? 3072 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.178 5.000 ? 288 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.354 23.673 ? 98 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.405 15.000 ? 392 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.612 15.000 ? 23 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 364 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1677 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.702 1.500 ? 1408 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.284 2.000 ? 2262 'X-RAY DIFFRACTION' ? r_scbond_it 2.297 3.000 ? 844 'X-RAY DIFFRACTION' ? r_scangle_it 3.706 4.500 ? 810 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.786 _refine_ls_shell.d_res_low 1.833 _refine_ls_shell.number_reflns_R_work 1456 _refine_ls_shell.R_factor_R_work 0.160 _refine_ls_shell.percent_reflns_obs 81.67 _refine_ls_shell.R_factor_R_free 0.229 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1533 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FWZ _struct.title 'Crystal structure of TrkA-N domain of inner membrane protein ybaL from Escherichia coli' _struct.pdbx_descriptor 'Inner membrane protein ybaL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FWZ _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;TrkA-N domain, ybaL, E.coli, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Antiport, Cell inner membrane, Cell membrane, Ion transport, Membrane, Transmembrane, Transport, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? SER A 29 ? GLY A 426 SER A 439 1 ? 14 HELX_P HELX_P2 2 SER A 39 ? ARG A 49 ? SER A 449 ARG A 459 1 ? 11 HELX_P HELX_P3 3 ASN A 60 ? ALA A 67 ? ASN A 470 ALA A 477 1 ? 8 HELX_P HELX_P4 4 HIS A 68 ? ALA A 72 ? HIS A 478 ALA A 482 5 ? 5 HELX_P HELX_P5 5 ASN A 81 ? ASN A 96 ? ASN A 491 ASN A 506 1 ? 16 HELX_P HELX_P6 6 TYR A 107 ? ARG A 117 ? TYR A 517 ARG A 527 1 ? 11 HELX_P HELX_P7 7 GLY A 125 ? THR A 139 ? GLY A 535 THR A 549 1 ? 15 HELX_P HELX_P8 8 GLY B 16 ? SER B 29 ? GLY B 426 SER B 439 1 ? 14 HELX_P HELX_P9 9 SER B 39 ? ARG B 49 ? SER B 449 ARG B 459 1 ? 11 HELX_P HELX_P10 10 ASN B 60 ? ALA B 67 ? ASN B 470 ALA B 477 1 ? 8 HELX_P HELX_P11 11 HIS B 68 ? ALA B 72 ? HIS B 478 ALA B 482 5 ? 5 HELX_P HELX_P12 12 ASN B 81 ? ASN B 96 ? ASN B 491 ASN B 506 1 ? 16 HELX_P HELX_P13 13 TYR B 107 ? ARG B 117 ? TYR B 517 ARG B 527 1 ? 11 HELX_P HELX_P14 14 GLY B 125 ? GLU B 138 ? GLY B 535 GLU B 548 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 71 SG ? ? A CYS 417 A CYS 481 1_555 ? ? ? ? ? ? ? 2.056 ? disulf2 disulf ? ? B CYS 7 SG ? ? ? 1_555 B CYS 71 SG ? ? B CYS 417 B CYS 481 1_555 ? ? ? ? ? ? ? 2.054 ? covale1 covale ? ? A ILE 63 C ? ? ? 1_555 A MSE 64 N ? ? A ILE 473 A MSE 474 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A MSE 64 C ? ? ? 1_555 A GLN 65 N ? ? A MSE 474 A GLN 475 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale ? ? A VAL 123 C ? ? ? 1_555 A MSE 124 N ? ? A VAL 533 A MSE 534 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 124 C ? ? ? 1_555 A GLY 125 N ? ? A MSE 534 A GLY 535 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? A THR 132 C ? ? ? 1_555 A MSE 133 N ? ? A THR 542 A MSE 543 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale ? ? A MSE 133 C ? ? ? 1_555 A LEU 134 N A ? A MSE 543 A LEU 544 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A MSE 133 C ? ? ? 1_555 A LEU 134 N B ? A MSE 543 A LEU 544 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? B ILE 63 C ? ? ? 1_555 B MSE 64 N A ? B ILE 473 B MSE 474 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? B ILE 63 C ? ? ? 1_555 B MSE 64 N B ? B ILE 473 B MSE 474 1_555 ? ? ? ? ? ? ? 1.335 ? covale10 covale ? ? B MSE 64 C A ? ? 1_555 B GLN 65 N ? ? B MSE 474 B GLN 475 1_555 ? ? ? ? ? ? ? 1.335 ? covale11 covale ? ? B MSE 64 C B ? ? 1_555 B GLN 65 N ? ? B MSE 474 B GLN 475 1_555 ? ? ? ? ? ? ? 1.333 ? covale12 covale ? ? B VAL 123 C ? ? ? 1_555 B MSE 124 N ? ? B VAL 533 B MSE 534 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? B MSE 124 C ? ? ? 1_555 B GLY 125 N ? ? B MSE 534 B GLY 535 1_555 ? ? ? ? ? ? ? 1.332 ? covale14 covale ? ? B THR 132 C ? ? ? 1_555 B MSE 133 N ? ? B THR 542 B MSE 543 1_555 ? ? ? ? ? ? ? 1.328 ? covale15 covale ? ? B MSE 133 C ? ? ? 1_555 B LEU 134 N ? ? B MSE 543 B LEU 544 1_555 ? ? ? ? ? ? ? 1.334 ? metalc1 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 602 B HOH 59 1_555 ? ? ? ? ? ? ? 2.084 ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 602 B HOH 82 1_555 ? ? ? ? ? ? ? 2.142 ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 602 B HOH 18 1_555 ? ? ? ? ? ? ? 2.099 ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 602 B HOH 17 1_555 ? ? ? ? ? ? ? 2.168 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 52 ? LEU A 55 ? ARG A 462 LEU A 465 A 2 LEU A 33 ? GLU A 37 ? LEU A 443 GLU A 447 A 3 ALA A 10 ? VAL A 13 ? ALA A 420 VAL A 423 A 4 TRP A 74 ? LEU A 77 ? TRP A 484 LEU A 487 A 5 GLU A 100 ? ALA A 105 ? GLU A 510 ALA A 515 A 6 GLN A 121 ? MSE A 124 ? GLN A 531 MSE A 534 B 1 ARG B 52 ? LEU B 55 ? ARG B 462 LEU B 465 B 2 LEU B 33 ? GLU B 37 ? LEU B 443 GLU B 447 B 3 ALA B 10 ? VAL B 13 ? ALA B 420 VAL B 423 B 4 TRP B 74 ? LEU B 77 ? TRP B 484 LEU B 487 B 5 GLU B 100 ? ALA B 105 ? GLU B 510 ALA B 515 B 6 GLN B 121 ? MSE B 124 ? GLN B 531 MSE B 534 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 54 ? O VAL A 464 N VAL A 35 ? N VAL A 445 A 2 3 O ILE A 36 ? O ILE A 446 N LEU A 12 ? N LEU A 422 A 3 4 N LEU A 11 ? N LEU A 421 O ILE A 76 ? O ILE A 486 A 4 5 N LEU A 77 ? N LEU A 487 O ILE A 102 ? O ILE A 512 A 5 6 N ALA A 103 ? N ALA A 513 O VAL A 123 ? O VAL A 533 B 1 2 O VAL B 54 ? O VAL B 464 N VAL B 35 ? N VAL B 445 B 2 3 O VAL B 34 ? O VAL B 444 N LEU B 12 ? N LEU B 422 B 3 4 N VAL B 13 ? N VAL B 423 O ILE B 76 ? O ILE B 486 B 4 5 N LEU B 77 ? N LEU B 487 O ILE B 102 ? O ILE B 512 B 5 6 N ALA B 103 ? N ALA B 513 O VAL B 123 ? O VAL B 533 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 18 'BINDING SITE FOR RESIDUE AMP A 601' AC2 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE AMP B 601' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG B 602' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 HOH F . ? HOH A 4 . ? 1_555 ? 2 AC1 18 HOH F . ? HOH A 36 . ? 1_555 ? 3 AC1 18 HOH F . ? HOH A 79 . ? 1_555 ? 4 AC1 18 HOH F . ? HOH A 106 . ? 1_555 ? 5 AC1 18 HOH F . ? HOH A 120 . ? 1_555 ? 6 AC1 18 GLY A 14 ? GLY A 424 . ? 1_555 ? 7 AC1 18 GLY A 16 ? GLY A 426 . ? 1_555 ? 8 AC1 18 ARG A 17 ? ARG A 427 . ? 1_555 ? 9 AC1 18 VAL A 18 ? VAL A 428 . ? 1_555 ? 10 AC1 18 GLU A 37 ? GLU A 447 . ? 1_555 ? 11 AC1 18 THR A 38 ? THR A 448 . ? 1_555 ? 12 AC1 18 ARG A 42 ? ARG A 452 . ? 1_555 ? 13 AC1 18 GLY A 56 ? GLY A 466 . ? 1_555 ? 14 AC1 18 ASN A 57 ? ASN A 467 . ? 1_555 ? 15 AC1 18 ALA A 58 ? ALA A 468 . ? 1_555 ? 16 AC1 18 ILE A 79 ? ILE A 489 . ? 1_555 ? 17 AC1 18 GLU A 84 ? GLU A 494 . ? 1_555 ? 18 AC1 18 ARG A 104 ? ARG A 514 . ? 1_555 ? 19 AC2 16 HOH G . ? HOH B 8 . ? 1_555 ? 20 AC2 16 HOH G . ? HOH B 39 . ? 1_555 ? 21 AC2 16 HOH G . ? HOH B 176 . ? 1_555 ? 22 AC2 16 HOH G . ? HOH B 180 . ? 1_555 ? 23 AC2 16 GLY B 14 ? GLY B 424 . ? 1_555 ? 24 AC2 16 GLY B 16 ? GLY B 426 . ? 1_555 ? 25 AC2 16 ARG B 17 ? ARG B 427 . ? 1_555 ? 26 AC2 16 VAL B 18 ? VAL B 428 . ? 1_555 ? 27 AC2 16 GLU B 37 ? GLU B 447 . ? 1_555 ? 28 AC2 16 THR B 38 ? THR B 448 . ? 1_555 ? 29 AC2 16 GLY B 56 ? GLY B 466 . ? 1_555 ? 30 AC2 16 ASN B 57 ? ASN B 467 . ? 1_555 ? 31 AC2 16 ALA B 58 ? ALA B 468 . ? 1_555 ? 32 AC2 16 ILE B 79 ? ILE B 489 . ? 1_555 ? 33 AC2 16 GLU B 84 ? GLU B 494 . ? 1_555 ? 34 AC2 16 ARG B 104 ? ARG B 514 . ? 1_555 ? 35 AC3 5 HOH F . ? HOH A 54 . ? 1_455 ? 36 AC3 5 HOH G . ? HOH B 17 . ? 1_555 ? 37 AC3 5 HOH G . ? HOH B 18 . ? 1_555 ? 38 AC3 5 HOH G . ? HOH B 59 . ? 1_555 ? 39 AC3 5 HOH G . ? HOH B 82 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FWZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FWZ _atom_sites.fract_transf_matrix[1][1] 0.028735 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003945 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018843 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013915 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 411 411 SER ALA A . n A 1 2 ASN 2 412 412 ASN ASN A . n A 1 3 ALA 3 413 413 ALA ALA A . n A 1 4 VAL 4 414 414 VAL VAL A . n A 1 5 ASP 5 415 415 ASP ASP A . n A 1 6 ILE 6 416 416 ILE ILE A . n A 1 7 CYS 7 417 417 CYS CYS A . n A 1 8 ASN 8 418 418 ASN ASN A . n A 1 9 HIS 9 419 419 HIS HIS A . n A 1 10 ALA 10 420 420 ALA ALA A . n A 1 11 LEU 11 421 421 LEU LEU A . n A 1 12 LEU 12 422 422 LEU LEU A . n A 1 13 VAL 13 423 423 VAL VAL A . n A 1 14 GLY 14 424 424 GLY GLY A . n A 1 15 TYR 15 425 425 TYR TYR A . n A 1 16 GLY 16 426 426 GLY GLY A . n A 1 17 ARG 17 427 427 ARG ARG A . n A 1 18 VAL 18 428 428 VAL VAL A . n A 1 19 GLY 19 429 429 GLY GLY A . n A 1 20 SER 20 430 430 SER SER A . n A 1 21 LEU 21 431 431 LEU LEU A . n A 1 22 LEU 22 432 432 LEU LEU A . n A 1 23 GLY 23 433 433 GLY GLY A . n A 1 24 GLU 24 434 434 GLU GLU A . n A 1 25 LYS 25 435 435 LYS LYS A . n A 1 26 LEU 26 436 436 LEU LEU A . n A 1 27 LEU 27 437 437 LEU LEU A . n A 1 28 ALA 28 438 438 ALA ALA A . n A 1 29 SER 29 439 439 SER ALA A . n A 1 30 ASP 30 440 440 ASP ALA A . n A 1 31 ILE 31 441 441 ILE ILE A . n A 1 32 PRO 32 442 442 PRO PRO A . n A 1 33 LEU 33 443 443 LEU LEU A . n A 1 34 VAL 34 444 444 VAL VAL A . n A 1 35 VAL 35 445 445 VAL VAL A . n A 1 36 ILE 36 446 446 ILE ILE A . n A 1 37 GLU 37 447 447 GLU GLU A . n A 1 38 THR 38 448 448 THR THR A . n A 1 39 SER 39 449 449 SER SER A . n A 1 40 ARG 40 450 450 ARG ARG A . n A 1 41 THR 41 451 451 THR THR A . n A 1 42 ARG 42 452 452 ARG ARG A . n A 1 43 VAL 43 453 453 VAL VAL A . n A 1 44 ASP 44 454 454 ASP ASP A . n A 1 45 GLU 45 455 455 GLU GLU A . n A 1 46 LEU 46 456 456 LEU LEU A . n A 1 47 ARG 47 457 457 ARG ARG A . n A 1 48 GLU 48 458 458 GLU GLU A . n A 1 49 ARG 49 459 459 ARG ARG A . n A 1 50 GLY 50 460 460 GLY GLY A . n A 1 51 VAL 51 461 461 VAL VAL A . n A 1 52 ARG 52 462 462 ARG ARG A . n A 1 53 ALA 53 463 463 ALA ALA A . n A 1 54 VAL 54 464 464 VAL VAL A . n A 1 55 LEU 55 465 465 LEU LEU A . n A 1 56 GLY 56 466 466 GLY GLY A . n A 1 57 ASN 57 467 467 ASN ASN A . n A 1 58 ALA 58 468 468 ALA ALA A . n A 1 59 ALA 59 469 469 ALA ALA A . n A 1 60 ASN 60 470 470 ASN ASN A . n A 1 61 GLU 61 471 471 GLU GLU A . n A 1 62 GLU 62 472 472 GLU GLU A . n A 1 63 ILE 63 473 473 ILE ILE A . n A 1 64 MSE 64 474 474 MSE MSE A . n A 1 65 GLN 65 475 475 GLN GLN A . n A 1 66 LEU 66 476 476 LEU LEU A . n A 1 67 ALA 67 477 477 ALA ALA A . n A 1 68 HIS 68 478 478 HIS HIS A . n A 1 69 LEU 69 479 479 LEU LEU A . n A 1 70 GLU 70 480 480 GLU GLU A . n A 1 71 CYS 71 481 481 CYS CYS A . n A 1 72 ALA 72 482 482 ALA ALA A . n A 1 73 LYS 73 483 483 LYS LYS A . n A 1 74 TRP 74 484 484 TRP TRP A . n A 1 75 LEU 75 485 485 LEU LEU A . n A 1 76 ILE 76 486 486 ILE ILE A . n A 1 77 LEU 77 487 487 LEU LEU A . n A 1 78 THR 78 488 488 THR THR A . n A 1 79 ILE 79 489 489 ILE ILE A . n A 1 80 PRO 80 490 490 PRO PRO A . n A 1 81 ASN 81 491 491 ASN ASN A . n A 1 82 GLY 82 492 492 GLY GLY A . n A 1 83 TYR 83 493 493 TYR TYR A . n A 1 84 GLU 84 494 494 GLU GLU A . n A 1 85 ALA 85 495 495 ALA ALA A . n A 1 86 GLY 86 496 496 GLY GLY A . n A 1 87 GLU 87 497 497 GLU GLU A . n A 1 88 ILE 88 498 498 ILE ILE A . n A 1 89 VAL 89 499 499 VAL VAL A . n A 1 90 ALA 90 500 500 ALA ALA A . n A 1 91 SER 91 501 501 SER SER A . n A 1 92 ALA 92 502 502 ALA ALA A . n A 1 93 ARG 93 503 503 ARG ARG A . n A 1 94 ALA 94 504 504 ALA ALA A . n A 1 95 LYS 95 505 505 LYS LYS A . n A 1 96 ASN 96 506 506 ASN ASN A . n A 1 97 PRO 97 507 507 PRO PRO A . n A 1 98 ASP 98 508 508 ASP ASP A . n A 1 99 ILE 99 509 509 ILE ILE A . n A 1 100 GLU 100 510 510 GLU GLU A . n A 1 101 ILE 101 511 511 ILE ILE A . n A 1 102 ILE 102 512 512 ILE ILE A . n A 1 103 ALA 103 513 513 ALA ALA A . n A 1 104 ARG 104 514 514 ARG ARG A . n A 1 105 ALA 105 515 515 ALA ALA A . n A 1 106 HIS 106 516 516 HIS HIS A . n A 1 107 TYR 107 517 517 TYR TYR A . n A 1 108 ASP 108 518 518 ASP ASP A . n A 1 109 ASP 109 519 519 ASP ASP A . n A 1 110 GLU 110 520 520 GLU GLU A . n A 1 111 VAL 111 521 521 VAL VAL A . n A 1 112 ALA 112 522 522 ALA ALA A . n A 1 113 TYR 113 523 523 TYR TYR A . n A 1 114 ILE 114 524 524 ILE ILE A . n A 1 115 THR 115 525 525 THR THR A . n A 1 116 GLU 116 526 526 GLU ALA A . n A 1 117 ARG 117 527 527 ARG ARG A . n A 1 118 GLY 118 528 528 GLY GLY A . n A 1 119 ALA 119 529 529 ALA ALA A . n A 1 120 ASN 120 530 530 ASN ASN A . n A 1 121 GLN 121 531 531 GLN GLN A . n A 1 122 VAL 122 532 532 VAL VAL A . n A 1 123 VAL 123 533 533 VAL VAL A . n A 1 124 MSE 124 534 534 MSE MSE A . n A 1 125 GLY 125 535 535 GLY GLY A . n A 1 126 GLU 126 536 536 GLU GLU A . n A 1 127 ARG 127 537 537 ARG ARG A . n A 1 128 GLU 128 538 538 GLU GLU A . n A 1 129 ILE 129 539 539 ILE ILE A . n A 1 130 ALA 130 540 540 ALA ALA A . n A 1 131 ARG 131 541 541 ARG ARG A . n A 1 132 THR 132 542 542 THR THR A . n A 1 133 MSE 133 543 543 MSE MSE A . n A 1 134 LEU 134 544 544 LEU LEU A . n A 1 135 GLU 135 545 545 GLU GLU A . n A 1 136 LEU 136 546 546 LEU LEU A . n A 1 137 LEU 137 547 547 LEU LEU A . n A 1 138 GLU 138 548 548 GLU GLU A . n A 1 139 THR 139 549 549 THR THR A . n A 1 140 PRO 140 550 550 PRO PRO A . n B 1 1 SER 1 411 ? ? ? B . n B 1 2 ASN 2 412 ? ? ? B . n B 1 3 ALA 3 413 ? ? ? B . n B 1 4 VAL 4 414 414 VAL ALA B . n B 1 5 ASP 5 415 415 ASP ALA B . n B 1 6 ILE 6 416 416 ILE ILE B . n B 1 7 CYS 7 417 417 CYS CYS B . n B 1 8 ASN 8 418 418 ASN ASN B . n B 1 9 HIS 9 419 419 HIS HIS B . n B 1 10 ALA 10 420 420 ALA ALA B . n B 1 11 LEU 11 421 421 LEU LEU B . n B 1 12 LEU 12 422 422 LEU LEU B . n B 1 13 VAL 13 423 423 VAL VAL B . n B 1 14 GLY 14 424 424 GLY GLY B . n B 1 15 TYR 15 425 425 TYR TYR B . n B 1 16 GLY 16 426 426 GLY GLY B . n B 1 17 ARG 17 427 427 ARG ARG B . n B 1 18 VAL 18 428 428 VAL VAL B . n B 1 19 GLY 19 429 429 GLY GLY B . n B 1 20 SER 20 430 430 SER SER B . n B 1 21 LEU 21 431 431 LEU LEU B . n B 1 22 LEU 22 432 432 LEU LEU B . n B 1 23 GLY 23 433 433 GLY GLY B . n B 1 24 GLU 24 434 434 GLU GLU B . n B 1 25 LYS 25 435 435 LYS LYS B . n B 1 26 LEU 26 436 436 LEU LEU B . n B 1 27 LEU 27 437 437 LEU LEU B . n B 1 28 ALA 28 438 438 ALA ALA B . n B 1 29 SER 29 439 439 SER SER B . n B 1 30 ASP 30 440 440 ASP ASP B . n B 1 31 ILE 31 441 441 ILE ILE B . n B 1 32 PRO 32 442 442 PRO PRO B . n B 1 33 LEU 33 443 443 LEU LEU B . n B 1 34 VAL 34 444 444 VAL VAL B . n B 1 35 VAL 35 445 445 VAL VAL B . n B 1 36 ILE 36 446 446 ILE ILE B . n B 1 37 GLU 37 447 447 GLU GLU B . n B 1 38 THR 38 448 448 THR THR B . n B 1 39 SER 39 449 449 SER SER B . n B 1 40 ARG 40 450 450 ARG ARG B . n B 1 41 THR 41 451 451 THR THR B . n B 1 42 ARG 42 452 452 ARG ARG B . n B 1 43 VAL 43 453 453 VAL VAL B . n B 1 44 ASP 44 454 454 ASP ASP B . n B 1 45 GLU 45 455 455 GLU GLU B . n B 1 46 LEU 46 456 456 LEU LEU B . n B 1 47 ARG 47 457 457 ARG ARG B . n B 1 48 GLU 48 458 458 GLU GLU B . n B 1 49 ARG 49 459 459 ARG ARG B . n B 1 50 GLY 50 460 460 GLY GLY B . n B 1 51 VAL 51 461 461 VAL VAL B . n B 1 52 ARG 52 462 462 ARG ARG B . n B 1 53 ALA 53 463 463 ALA ALA B . n B 1 54 VAL 54 464 464 VAL VAL B . n B 1 55 LEU 55 465 465 LEU LEU B . n B 1 56 GLY 56 466 466 GLY GLY B . n B 1 57 ASN 57 467 467 ASN ASN B . n B 1 58 ALA 58 468 468 ALA ALA B . n B 1 59 ALA 59 469 469 ALA ALA B . n B 1 60 ASN 60 470 470 ASN ASN B . n B 1 61 GLU 61 471 471 GLU GLU B . n B 1 62 GLU 62 472 472 GLU GLU B . n B 1 63 ILE 63 473 473 ILE ILE B . n B 1 64 MSE 64 474 474 MSE MSE B . n B 1 65 GLN 65 475 475 GLN GLN B . n B 1 66 LEU 66 476 476 LEU LEU B . n B 1 67 ALA 67 477 477 ALA ALA B . n B 1 68 HIS 68 478 478 HIS HIS B . n B 1 69 LEU 69 479 479 LEU LEU B . n B 1 70 GLU 70 480 480 GLU GLU B . n B 1 71 CYS 71 481 481 CYS CYS B . n B 1 72 ALA 72 482 482 ALA ALA B . n B 1 73 LYS 73 483 483 LYS LYS B . n B 1 74 TRP 74 484 484 TRP TRP B . n B 1 75 LEU 75 485 485 LEU LEU B . n B 1 76 ILE 76 486 486 ILE ILE B . n B 1 77 LEU 77 487 487 LEU LEU B . n B 1 78 THR 78 488 488 THR THR B . n B 1 79 ILE 79 489 489 ILE ILE B . n B 1 80 PRO 80 490 490 PRO PRO B . n B 1 81 ASN 81 491 491 ASN ASN B . n B 1 82 GLY 82 492 492 GLY GLY B . n B 1 83 TYR 83 493 493 TYR TYR B . n B 1 84 GLU 84 494 494 GLU GLU B . n B 1 85 ALA 85 495 495 ALA ALA B . n B 1 86 GLY 86 496 496 GLY GLY B . n B 1 87 GLU 87 497 497 GLU GLU B . n B 1 88 ILE 88 498 498 ILE ILE B . n B 1 89 VAL 89 499 499 VAL VAL B . n B 1 90 ALA 90 500 500 ALA ALA B . n B 1 91 SER 91 501 501 SER SER B . n B 1 92 ALA 92 502 502 ALA ALA B . n B 1 93 ARG 93 503 503 ARG ARG B . n B 1 94 ALA 94 504 504 ALA ALA B . n B 1 95 LYS 95 505 505 LYS LYS B . n B 1 96 ASN 96 506 506 ASN ASN B . n B 1 97 PRO 97 507 507 PRO PRO B . n B 1 98 ASP 98 508 508 ASP ASP B . n B 1 99 ILE 99 509 509 ILE ILE B . n B 1 100 GLU 100 510 510 GLU GLU B . n B 1 101 ILE 101 511 511 ILE ILE B . n B 1 102 ILE 102 512 512 ILE ILE B . n B 1 103 ALA 103 513 513 ALA ALA B . n B 1 104 ARG 104 514 514 ARG ARG B . n B 1 105 ALA 105 515 515 ALA ALA B . n B 1 106 HIS 106 516 516 HIS HIS B . n B 1 107 TYR 107 517 517 TYR TYR B . n B 1 108 ASP 108 518 518 ASP ASP B . n B 1 109 ASP 109 519 519 ASP ASP B . n B 1 110 GLU 110 520 520 GLU GLU B . n B 1 111 VAL 111 521 521 VAL VAL B . n B 1 112 ALA 112 522 522 ALA ALA B . n B 1 113 TYR 113 523 523 TYR TYR B . n B 1 114 ILE 114 524 524 ILE ILE B . n B 1 115 THR 115 525 525 THR THR B . n B 1 116 GLU 116 526 526 GLU GLU B . n B 1 117 ARG 117 527 527 ARG ARG B . n B 1 118 GLY 118 528 528 GLY GLY B . n B 1 119 ALA 119 529 529 ALA ALA B . n B 1 120 ASN 120 530 530 ASN ASN B . n B 1 121 GLN 121 531 531 GLN GLN B . n B 1 122 VAL 122 532 532 VAL VAL B . n B 1 123 VAL 123 533 533 VAL VAL B . n B 1 124 MSE 124 534 534 MSE MSE B . n B 1 125 GLY 125 535 535 GLY GLY B . n B 1 126 GLU 126 536 536 GLU GLU B . n B 1 127 ARG 127 537 537 ARG ARG B . n B 1 128 GLU 128 538 538 GLU GLU B . n B 1 129 ILE 129 539 539 ILE ILE B . n B 1 130 ALA 130 540 540 ALA ALA B . n B 1 131 ARG 131 541 541 ARG ARG B . n B 1 132 THR 132 542 542 THR THR B . n B 1 133 MSE 133 543 543 MSE MSE B . n B 1 134 LEU 134 544 544 LEU LEU B . n B 1 135 GLU 135 545 545 GLU GLU B . n B 1 136 LEU 136 546 546 LEU LEU B . n B 1 137 LEU 137 547 547 LEU LEU B . n B 1 138 GLU 138 548 548 GLU ALA B . n B 1 139 THR 139 549 ? ? ? B . n B 1 140 PRO 140 550 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 64 A MSE 474 ? MET SELENOMETHIONINE 2 A MSE 124 A MSE 534 ? MET SELENOMETHIONINE 3 A MSE 133 A MSE 543 ? MET SELENOMETHIONINE 4 B MSE 64 B MSE 474 ? MET SELENOMETHIONINE 5 B MSE 124 B MSE 534 ? MET SELENOMETHIONINE 6 B MSE 133 B MSE 543 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4190 ? 1 MORE -45 ? 1 'SSA (A^2)' 12570 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? B HOH 59 ? 1_555 MG ? E MG . ? B MG 602 ? 1_555 O ? G HOH . ? B HOH 82 ? 1_555 86.8 ? 2 O ? G HOH . ? B HOH 59 ? 1_555 MG ? E MG . ? B MG 602 ? 1_555 O ? G HOH . ? B HOH 18 ? 1_555 86.8 ? 3 O ? G HOH . ? B HOH 82 ? 1_555 MG ? E MG . ? B MG 602 ? 1_555 O ? G HOH . ? B HOH 18 ? 1_555 88.1 ? 4 O ? G HOH . ? B HOH 59 ? 1_555 MG ? E MG . ? B MG 602 ? 1_555 O ? G HOH . ? B HOH 17 ? 1_555 178.1 ? 5 O ? G HOH . ? B HOH 82 ? 1_555 MG ? E MG . ? B MG 602 ? 1_555 O ? G HOH . ? B HOH 17 ? 1_555 93.2 ? 6 O ? G HOH . ? B HOH 18 ? 1_555 MG ? E MG . ? B MG 602 ? 1_555 O ? G HOH . ? B HOH 17 ? 1_555 91.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-10 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 24.5977 27.1590 43.8738 0.1174 0.0409 0.0178 -0.0276 0.0054 0.0099 1.5409 2.0768 1.7342 -0.8860 0.1090 -0.3526 0.0325 -0.0359 0.0034 0.1598 0.0547 -0.0514 -0.3454 -0.0894 -0.0429 'X-RAY DIFFRACTION' 2 ? refined 29.7438 12.9511 51.1536 0.0383 0.0332 0.0511 -0.0099 0.0177 -0.0139 0.6390 1.7214 2.5170 0.5694 -0.2096 0.5952 -0.0467 0.1098 -0.0631 -0.0541 -0.0679 -0.0727 -0.1146 0.0763 0.1306 'X-RAY DIFFRACTION' 3 ? refined 42.1836 24.5254 67.0503 0.0439 0.0668 0.0992 0.0009 0.0075 0.0061 4.1197 3.9889 1.6243 3.9229 1.2344 1.4285 0.0787 -0.0387 -0.0400 -0.0213 -0.1545 -0.1496 0.0222 -0.0056 0.0575 'X-RAY DIFFRACTION' 4 ? refined 37.0753 18.1746 82.0590 0.0232 0.0152 0.0287 0.0070 -0.0187 -0.0082 0.9806 2.5792 1.5518 -0.6632 0.4095 -0.5584 -0.0866 0.0243 0.0623 -0.0554 0.0505 -0.2021 0.2254 -0.0073 -0.0055 'X-RAY DIFFRACTION' 5 ? refined 30.1173 32.2008 75.0408 0.0094 0.0151 0.0570 -0.0055 0.0040 -0.0080 1.3895 1.3631 0.9592 -0.6116 -0.0499 0.3152 -0.0254 0.0700 -0.0446 -0.0031 0.0399 -0.0112 -0.0679 -0.0725 0.0159 'X-RAY DIFFRACTION' 6 ? refined 36.6303 26.7370 55.1002 0.0889 0.0752 0.0914 -0.0549 -0.0046 0.0021 5.7237 2.9584 5.3222 0.6315 -0.7684 1.9897 -0.1402 0.2476 -0.1074 0.1761 0.0446 -0.1713 -0.1086 -0.2812 0.2682 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 416 A 489 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 490 A 535 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 536 A 550 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 B 416 B 489 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 B 490 B 535 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 B 536 B 548 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 HKL-3000 phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 SHELXD phasing . ? 5 RESOLVE 'model building' . ? 6 Coot 'model building' . ? 7 REFMAC refinement 5.5.0054 ? 8 HKL-3000 'data reduction' . ? 9 HKL-3000 'data scaling' . ? 10 DM phasing . ? 11 RESOLVE phasing . ? 12 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 99 ? ? O A HOH 183 ? ? 2.10 2 1 O B HOH 157 ? ? O B HOH 180 ? ? 2.11 3 1 O B HOH 157 ? ? O B HOH 189 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OH _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 517 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 526 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_747 _pdbx_validate_symm_contact.dist 2.17 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 425 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -141.85 _pdbx_validate_torsion.psi 49.55 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 411 ? OG ? A SER 1 OG 2 1 Y 1 A SER 439 ? OG ? A SER 29 OG 3 1 Y 1 A ASP 440 ? CG ? A ASP 30 CG 4 1 Y 1 A ASP 440 ? OD1 ? A ASP 30 OD1 5 1 Y 1 A ASP 440 ? OD2 ? A ASP 30 OD2 6 1 Y 1 A GLU 526 ? CG ? A GLU 116 CG 7 1 Y 1 A GLU 526 ? CD ? A GLU 116 CD 8 1 Y 1 A GLU 526 ? OE1 ? A GLU 116 OE1 9 1 Y 1 A GLU 526 ? OE2 ? A GLU 116 OE2 10 1 Y 1 B VAL 414 ? CG1 ? B VAL 4 CG1 11 1 Y 1 B VAL 414 ? CG2 ? B VAL 4 CG2 12 1 Y 1 B ASP 415 ? CG ? B ASP 5 CG 13 1 Y 1 B ASP 415 ? OD1 ? B ASP 5 OD1 14 1 Y 1 B ASP 415 ? OD2 ? B ASP 5 OD2 15 1 Y 1 B GLU 548 ? CG ? B GLU 138 CG 16 1 Y 1 B GLU 548 ? CD ? B GLU 138 CD 17 1 Y 1 B GLU 548 ? OE1 ? B GLU 138 OE1 18 1 Y 1 B GLU 548 ? OE2 ? B GLU 138 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 411 ? B SER 1 2 1 Y 1 B ASN 412 ? B ASN 2 3 1 Y 1 B ALA 413 ? B ALA 3 4 1 Y 1 B THR 549 ? B THR 139 5 1 Y 1 B PRO 550 ? B PRO 140 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ADENOSINE MONOPHOSPHATE' AMP 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP 1 601 601 AMP AMP A . D 2 AMP 1 601 601 AMP AMP B . E 3 MG 1 602 602 MG MG B . F 4 HOH 1 1 1 HOH HOH A . F 4 HOH 2 3 3 HOH HOH A . F 4 HOH 3 4 4 HOH HOH A . F 4 HOH 4 6 6 HOH HOH A . F 4 HOH 5 11 11 HOH HOH A . F 4 HOH 6 12 12 HOH HOH A . F 4 HOH 7 14 14 HOH HOH A . F 4 HOH 8 20 20 HOH HOH A . F 4 HOH 9 22 22 HOH HOH A . F 4 HOH 10 24 24 HOH HOH A . F 4 HOH 11 28 28 HOH HOH A . F 4 HOH 12 31 31 HOH HOH A . F 4 HOH 13 33 33 HOH HOH A . F 4 HOH 14 35 35 HOH HOH A . F 4 HOH 15 36 36 HOH HOH A . F 4 HOH 16 38 38 HOH HOH A . F 4 HOH 17 41 41 HOH HOH A . F 4 HOH 18 42 42 HOH HOH A . F 4 HOH 19 44 44 HOH HOH A . F 4 HOH 20 48 48 HOH HOH A . F 4 HOH 21 50 50 HOH HOH A . F 4 HOH 22 53 53 HOH HOH A . F 4 HOH 23 54 54 HOH HOH A . F 4 HOH 24 56 56 HOH HOH A . F 4 HOH 25 58 58 HOH HOH A . F 4 HOH 26 60 60 HOH HOH A . F 4 HOH 27 61 61 HOH HOH A . F 4 HOH 28 62 62 HOH HOH A . F 4 HOH 29 64 64 HOH HOH A . F 4 HOH 30 69 69 HOH HOH A . F 4 HOH 31 71 71 HOH HOH A . F 4 HOH 32 76 76 HOH HOH A . F 4 HOH 33 78 78 HOH HOH A . F 4 HOH 34 79 79 HOH HOH A . F 4 HOH 35 81 81 HOH HOH A . F 4 HOH 36 84 84 HOH HOH A . F 4 HOH 37 85 85 HOH HOH A . F 4 HOH 38 88 88 HOH HOH A . F 4 HOH 39 90 90 HOH HOH A . F 4 HOH 40 95 95 HOH HOH A . F 4 HOH 41 97 97 HOH HOH A . F 4 HOH 42 98 98 HOH HOH A . F 4 HOH 43 99 99 HOH HOH A . F 4 HOH 44 102 102 HOH HOH A . F 4 HOH 45 105 105 HOH HOH A . F 4 HOH 46 106 106 HOH HOH A . F 4 HOH 47 118 118 HOH HOH A . F 4 HOH 48 119 119 HOH HOH A . F 4 HOH 49 120 120 HOH HOH A . F 4 HOH 50 121 121 HOH HOH A . F 4 HOH 51 122 122 HOH HOH A . F 4 HOH 52 123 123 HOH HOH A . F 4 HOH 53 124 124 HOH HOH A . F 4 HOH 54 125 125 HOH HOH A . F 4 HOH 55 128 128 HOH HOH A . F 4 HOH 56 131 131 HOH HOH A . F 4 HOH 57 132 132 HOH HOH A . F 4 HOH 58 134 134 HOH HOH A . F 4 HOH 59 141 141 HOH HOH A . F 4 HOH 60 142 142 HOH HOH A . F 4 HOH 61 143 143 HOH HOH A . F 4 HOH 62 147 147 HOH HOH A . F 4 HOH 63 149 149 HOH HOH A . F 4 HOH 64 150 150 HOH HOH A . F 4 HOH 65 154 154 HOH HOH A . F 4 HOH 66 155 155 HOH HOH A . F 4 HOH 67 161 161 HOH HOH A . F 4 HOH 68 163 163 HOH HOH A . F 4 HOH 69 165 165 HOH HOH A . F 4 HOH 70 168 168 HOH HOH A . F 4 HOH 71 169 169 HOH HOH A . F 4 HOH 72 171 171 HOH HOH A . F 4 HOH 73 172 172 HOH HOH A . F 4 HOH 74 173 173 HOH HOH A . F 4 HOH 75 177 177 HOH HOH A . F 4 HOH 76 183 183 HOH HOH A . F 4 HOH 77 184 184 HOH HOH A . F 4 HOH 78 186 186 HOH HOH A . F 4 HOH 79 188 188 HOH HOH A . F 4 HOH 80 190 190 HOH HOH A . F 4 HOH 81 191 191 HOH HOH A . F 4 HOH 82 193 193 HOH HOH A . F 4 HOH 83 195 195 HOH HOH A . F 4 HOH 84 201 201 HOH HOH A . G 4 HOH 1 2 2 HOH HOH B . G 4 HOH 2 5 5 HOH HOH B . G 4 HOH 3 7 7 HOH HOH B . G 4 HOH 4 8 8 HOH HOH B . G 4 HOH 5 9 9 HOH HOH B . G 4 HOH 6 10 10 HOH HOH B . G 4 HOH 7 13 13 HOH HOH B . G 4 HOH 8 15 15 HOH HOH B . G 4 HOH 9 16 16 HOH HOH B . G 4 HOH 10 17 17 HOH HOH B . G 4 HOH 11 18 18 HOH HOH B . G 4 HOH 12 19 19 HOH HOH B . G 4 HOH 13 21 21 HOH HOH B . G 4 HOH 14 23 23 HOH HOH B . G 4 HOH 15 25 25 HOH HOH B . G 4 HOH 16 26 26 HOH HOH B . G 4 HOH 17 27 27 HOH HOH B . G 4 HOH 18 29 29 HOH HOH B . G 4 HOH 19 30 30 HOH HOH B . G 4 HOH 20 32 32 HOH HOH B . G 4 HOH 21 34 34 HOH HOH B . G 4 HOH 22 37 37 HOH HOH B . G 4 HOH 23 39 39 HOH HOH B . G 4 HOH 24 40 40 HOH HOH B . G 4 HOH 25 43 43 HOH HOH B . G 4 HOH 26 45 45 HOH HOH B . G 4 HOH 27 46 46 HOH HOH B . G 4 HOH 28 47 47 HOH HOH B . G 4 HOH 29 49 49 HOH HOH B . G 4 HOH 30 51 51 HOH HOH B . G 4 HOH 31 52 52 HOH HOH B . G 4 HOH 32 55 55 HOH HOH B . G 4 HOH 33 57 57 HOH HOH B . G 4 HOH 34 59 59 HOH HOH B . G 4 HOH 35 63 63 HOH HOH B . G 4 HOH 36 65 65 HOH HOH B . G 4 HOH 37 66 66 HOH HOH B . G 4 HOH 38 67 67 HOH HOH B . G 4 HOH 39 68 68 HOH HOH B . G 4 HOH 40 70 70 HOH HOH B . G 4 HOH 41 72 72 HOH HOH B . G 4 HOH 42 73 73 HOH HOH B . G 4 HOH 43 74 74 HOH HOH B . G 4 HOH 44 75 75 HOH HOH B . G 4 HOH 45 77 77 HOH HOH B . G 4 HOH 46 80 80 HOH HOH B . G 4 HOH 47 82 82 HOH HOH B . G 4 HOH 48 83 83 HOH HOH B . G 4 HOH 49 86 86 HOH HOH B . G 4 HOH 50 87 87 HOH HOH B . G 4 HOH 51 89 89 HOH HOH B . G 4 HOH 52 91 91 HOH HOH B . G 4 HOH 53 92 92 HOH HOH B . G 4 HOH 54 93 93 HOH HOH B . G 4 HOH 55 94 94 HOH HOH B . G 4 HOH 56 96 96 HOH HOH B . G 4 HOH 57 100 100 HOH HOH B . G 4 HOH 58 101 101 HOH HOH B . G 4 HOH 59 103 103 HOH HOH B . G 4 HOH 60 104 104 HOH HOH B . G 4 HOH 61 107 107 HOH HOH B . G 4 HOH 62 108 108 HOH HOH B . G 4 HOH 63 109 109 HOH HOH B . G 4 HOH 64 110 110 HOH HOH B . G 4 HOH 65 111 111 HOH HOH B . G 4 HOH 66 112 112 HOH HOH B . G 4 HOH 67 113 113 HOH HOH B . G 4 HOH 68 114 114 HOH HOH B . G 4 HOH 69 115 115 HOH HOH B . G 4 HOH 70 116 116 HOH HOH B . G 4 HOH 71 117 117 HOH HOH B . G 4 HOH 72 126 126 HOH HOH B . G 4 HOH 73 127 127 HOH HOH B . G 4 HOH 74 129 129 HOH HOH B . G 4 HOH 75 130 130 HOH HOH B . G 4 HOH 76 133 133 HOH HOH B . G 4 HOH 77 135 135 HOH HOH B . G 4 HOH 78 136 136 HOH HOH B . G 4 HOH 79 137 137 HOH HOH B . G 4 HOH 80 138 138 HOH HOH B . G 4 HOH 81 139 139 HOH HOH B . G 4 HOH 82 140 140 HOH HOH B . G 4 HOH 83 144 144 HOH HOH B . G 4 HOH 84 145 145 HOH HOH B . G 4 HOH 85 146 146 HOH HOH B . G 4 HOH 86 148 148 HOH HOH B . G 4 HOH 87 151 151 HOH HOH B . G 4 HOH 88 152 152 HOH HOH B . G 4 HOH 89 153 153 HOH HOH B . G 4 HOH 90 156 156 HOH HOH B . G 4 HOH 91 157 157 HOH HOH B . G 4 HOH 92 158 158 HOH HOH B . G 4 HOH 93 159 159 HOH HOH B . G 4 HOH 94 160 160 HOH HOH B . G 4 HOH 95 162 162 HOH HOH B . G 4 HOH 96 164 164 HOH HOH B . G 4 HOH 97 166 166 HOH HOH B . G 4 HOH 98 167 167 HOH HOH B . G 4 HOH 99 170 170 HOH HOH B . G 4 HOH 100 174 174 HOH HOH B . G 4 HOH 101 175 175 HOH HOH B . G 4 HOH 102 176 176 HOH HOH B . G 4 HOH 103 178 178 HOH HOH B . G 4 HOH 104 179 179 HOH HOH B . G 4 HOH 105 180 180 HOH HOH B . G 4 HOH 106 181 181 HOH HOH B . G 4 HOH 107 182 182 HOH HOH B . G 4 HOH 108 185 185 HOH HOH B . G 4 HOH 109 187 187 HOH HOH B . G 4 HOH 110 189 189 HOH HOH B . G 4 HOH 111 192 192 HOH HOH B . G 4 HOH 112 194 194 HOH HOH B . G 4 HOH 113 196 196 HOH HOH B . G 4 HOH 114 197 197 HOH HOH B . G 4 HOH 115 198 198 HOH HOH B . G 4 HOH 116 199 199 HOH HOH B . G 4 HOH 117 200 200 HOH HOH B . #