data_3FYW # _entry.id 3FYW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FYW pdb_00003fyw 10.2210/pdb3fyw/pdb RCSB RCSB051210 ? ? WWPDB D_1000051210 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FY8 . unspecified PDB 3FY9 . unspecified PDB 3FYV . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FYW _pdbx_database_status.recvd_initial_deposition_date 2009-01-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Oefner, C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Inhibitory properties and X-ray crystallographic study of the binding of AR-101, AR-102 and iclaprim in ternary complexes with NADPH and dihydrofolate reductase from Staphylococcus aureus ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 65 _citation.page_first 751 _citation.page_last 757 _citation.year 2009 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19622858 _citation.pdbx_database_id_DOI 10.1107/S0907444909013936 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Oefner, C.' 1 ? primary 'Parisi, S.' 2 ? primary 'Schulz, H.' 3 ? primary 'Lociuro, S.' 4 ? primary 'Dale, G.E.' 5 ? # _cell.entry_id 3FYW _cell.length_a 79.088 _cell.length_b 79.088 _cell.length_c 108.446 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FYW _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dihydrofolate reductase' 18144.736 1 1.5.1.3 ? ? ? 2 non-polymer syn 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 745.421 1 ? ? ? ? 3 non-polymer syn '5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine' 354.403 1 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DHFR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _entity_poly.pdbx_seq_one_letter_code_can ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 SER n 1 4 ILE n 1 5 LEU n 1 6 VAL n 1 7 ALA n 1 8 HIS n 1 9 ASP n 1 10 LEU n 1 11 GLN n 1 12 ARG n 1 13 VAL n 1 14 ILE n 1 15 GLY n 1 16 PHE n 1 17 GLU n 1 18 ASN n 1 19 GLN n 1 20 LEU n 1 21 PRO n 1 22 TRP n 1 23 HIS n 1 24 LEU n 1 25 PRO n 1 26 ASN n 1 27 ASP n 1 28 LEU n 1 29 LYS n 1 30 HIS n 1 31 VAL n 1 32 LYS n 1 33 LYS n 1 34 LEU n 1 35 SER n 1 36 THR n 1 37 GLY n 1 38 HIS n 1 39 THR n 1 40 LEU n 1 41 VAL n 1 42 MET n 1 43 GLY n 1 44 ARG n 1 45 LYS n 1 46 THR n 1 47 PHE n 1 48 GLU n 1 49 SER n 1 50 ILE n 1 51 GLY n 1 52 LYS n 1 53 PRO n 1 54 LEU n 1 55 PRO n 1 56 ASN n 1 57 ARG n 1 58 ARG n 1 59 ASN n 1 60 VAL n 1 61 VAL n 1 62 LEU n 1 63 THR n 1 64 SER n 1 65 ASP n 1 66 THR n 1 67 SER n 1 68 PHE n 1 69 ASN n 1 70 VAL n 1 71 GLU n 1 72 GLY n 1 73 VAL n 1 74 ASP n 1 75 VAL n 1 76 ILE n 1 77 HIS n 1 78 SER n 1 79 ILE n 1 80 GLU n 1 81 ASP n 1 82 ILE n 1 83 TYR n 1 84 GLN n 1 85 LEU n 1 86 PRO n 1 87 GLY n 1 88 HIS n 1 89 VAL n 1 90 PHE n 1 91 ILE n 1 92 PHE n 1 93 GLY n 1 94 GLY n 1 95 GLN n 1 96 THR n 1 97 LEU n 1 98 PHE n 1 99 GLU n 1 100 GLU n 1 101 MET n 1 102 ILE n 1 103 ASP n 1 104 LYS n 1 105 VAL n 1 106 ASP n 1 107 ASP n 1 108 MET n 1 109 TYR n 1 110 ILE n 1 111 THR n 1 112 VAL n 1 113 ILE n 1 114 GLU n 1 115 GLY n 1 116 LYS n 1 117 PHE n 1 118 ARG n 1 119 GLY n 1 120 ASP n 1 121 THR n 1 122 PHE n 1 123 PHE n 1 124 PRO n 1 125 PRO n 1 126 TYR n 1 127 THR n 1 128 PHE n 1 129 GLU n 1 130 ASP n 1 131 TRP n 1 132 GLU n 1 133 VAL n 1 134 ALA n 1 135 SER n 1 136 SER n 1 137 VAL n 1 138 GLU n 1 139 GLY n 1 140 LYS n 1 141 LEU n 1 142 ASP n 1 143 GLU n 1 144 LYS n 1 145 ASN n 1 146 THR n 1 147 ILE n 1 148 PRO n 1 149 HIS n 1 150 THR n 1 151 PHE n 1 152 LEU n 1 153 HIS n 1 154 LEU n 1 155 ILE n 1 156 ARG n 1 157 LYS n 1 158 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene folA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DYR_STAAU _struct_ref.pdbx_db_accession P0A017 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FYW _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A017 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 158 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NDP non-polymer . 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ? 'C21 H30 N7 O17 P3' 745.421 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XCF non-polymer . '5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine' ? 'C19 H22 N4 O3' 354.403 # _exptl.entry_id 3FYW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_percent_sol 54.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '25% PEG3350, 200mM NaCl, 100mM bis-Tris, pH5.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2007-11-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3FYW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.1 _reflns.number_obs 11812 _reflns.number_all ? _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 71.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FYW _refine.ls_number_reflns_obs 11215 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 96.23 _refine.ls_R_factor_obs 0.22146 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21942 _refine.ls_R_factor_R_free 0.26259 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 561 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 34.998 _refine.aniso_B[1][1] -0.41 _refine.aniso_B[2][2] -0.41 _refine.aniso_B[3][3] 0.61 _refine.aniso_B[1][2] -0.20 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3FY8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.251 _refine.pdbx_overall_ESU_R_Free 0.206 _refine.overall_SU_ML 0.165 _refine.overall_SU_B 6.301 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1282 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 74 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 1481 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.004 0.022 ? 1396 'X-RAY DIFFRACTION' ? r_bond_other_d 0.000 0.020 ? 928 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.823 2.018 ? 1905 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.799 3.000 ? 2265 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 10.915 5.000 ? 157 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.227 24.194 ? 62 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.716 15.000 ? 230 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.245 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.042 0.200 ? 210 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1486 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 277 'X-RAY DIFFRACTION' ? r_nbd_refined 0.244 0.200 ? 318 'X-RAY DIFFRACTION' ? r_nbd_other 0.269 0.200 ? 1052 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.202 0.200 ? 668 'X-RAY DIFFRACTION' ? r_nbtor_other 0.092 0.200 ? 744 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.285 0.200 ? 97 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.263 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.288 0.200 ? 30 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.125 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.669 2.000 ? 1016 'X-RAY DIFFRACTION' ? r_mcbond_other 0.066 2.000 ? 318 'X-RAY DIFFRACTION' ? r_mcangle_it 0.774 3.000 ? 1290 'X-RAY DIFFRACTION' ? r_scbond_it 0.304 2.000 ? 717 'X-RAY DIFFRACTION' ? r_scangle_it 0.473 3.000 ? 612 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.213 _refine_ls_shell.number_reflns_R_work 1231 _refine_ls_shell.R_factor_R_work 0.309 _refine_ls_shell.percent_reflns_obs 75.49 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 69 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FYW _struct.title 'Staph. aureus DHFR complexed with NADPH and AR-101' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FYW _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'Staph. aureus DHFR, AR-101, OXIDOREDUCTASE, NADP, One-carbon metabolism' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 24 ? THR A 36 ? LEU X 24 THR X 36 1 ? 13 HELX_P HELX_P2 2 ARG A 44 ? GLY A 51 ? ARG X 44 GLY X 51 1 ? 8 HELX_P HELX_P3 3 SER A 78 ? LEU A 85 ? SER X 78 LEU X 85 5 ? 8 HELX_P HELX_P4 4 GLY A 94 ? ILE A 102 ? GLY X 94 ILE X 102 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 93 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 94 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 73 ? ILE A 76 ? VAL X 73 ILE X 76 A 2 ARG A 58 ? LEU A 62 ? ARG X 58 LEU X 62 A 3 THR A 39 ? GLY A 43 ? THR X 39 GLY X 43 A 4 VAL A 89 ? ILE A 91 ? VAL X 89 ILE X 91 A 5 LEU A 2 ? ASP A 9 ? LEU X 2 ASP X 9 A 6 ASP A 107 ? ILE A 113 ? ASP X 107 ILE X 113 A 7 HIS A 149 ? ARG A 156 ? HIS X 149 ARG X 156 A 8 TRP A 131 ? GLU A 138 ? TRP X 131 GLU X 138 B 1 VAL A 13 ? GLY A 15 ? VAL X 13 GLY X 15 B 2 THR A 121 ? PHE A 122 ? THR X 121 PHE X 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 74 ? O ASP X 74 N ASN A 59 ? N ASN X 59 A 2 3 O ARG A 58 ? O ARG X 58 N LEU A 40 ? N LEU X 40 A 3 4 N THR A 39 ? N THR X 39 O PHE A 90 ? O PHE X 90 A 4 5 O ILE A 91 ? O ILE X 91 N SER A 3 ? N SER X 3 A 5 6 N ILE A 4 ? N ILE X 4 O TYR A 109 ? O TYR X 109 A 6 7 N ILE A 110 ? N ILE X 110 O LEU A 152 ? O LEU X 152 A 7 8 O ILE A 155 ? O ILE X 155 N GLU A 132 ? N GLU X 132 B 1 2 N ILE A 14 ? N ILE X 14 O THR A 121 ? O THR X 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X NDP 301 ? 27 'BINDING SITE FOR RESIDUE NDP X 301' AC2 Software X XCF 300 ? 11 'BINDING SITE FOR RESIDUE XCF X 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 27 VAL A 6 ? VAL X 6 . ? 1_555 ? 2 AC1 27 ALA A 7 ? ALA X 7 . ? 1_555 ? 3 AC1 27 ILE A 14 ? ILE X 14 . ? 1_555 ? 4 AC1 27 GLY A 15 ? GLY X 15 . ? 1_555 ? 5 AC1 27 ASN A 18 ? ASN X 18 . ? 1_555 ? 6 AC1 27 GLN A 19 ? GLN X 19 . ? 1_555 ? 7 AC1 27 LEU A 20 ? LEU X 20 . ? 1_555 ? 8 AC1 27 GLY A 43 ? GLY X 43 . ? 1_555 ? 9 AC1 27 ARG A 44 ? ARG X 44 . ? 1_555 ? 10 AC1 27 LYS A 45 ? LYS X 45 . ? 1_555 ? 11 AC1 27 THR A 46 ? THR X 46 . ? 1_555 ? 12 AC1 27 LEU A 62 ? LEU X 62 . ? 1_555 ? 13 AC1 27 THR A 63 ? THR X 63 . ? 1_555 ? 14 AC1 27 SER A 64 ? SER X 64 . ? 1_555 ? 15 AC1 27 HIS A 77 ? HIS X 77 . ? 1_555 ? 16 AC1 27 ILE A 79 ? ILE X 79 . ? 1_555 ? 17 AC1 27 PHE A 92 ? PHE X 92 . ? 1_555 ? 18 AC1 27 GLY A 94 ? GLY X 94 . ? 1_555 ? 19 AC1 27 GLN A 95 ? GLN X 95 . ? 1_555 ? 20 AC1 27 THR A 96 ? THR X 96 . ? 1_555 ? 21 AC1 27 GLU A 100 ? GLU X 100 . ? 1_555 ? 22 AC1 27 THR A 121 ? THR X 121 . ? 1_555 ? 23 AC1 27 HOH D . ? HOH X 174 . ? 1_555 ? 24 AC1 27 HOH D . ? HOH X 184 . ? 10_665 ? 25 AC1 27 HOH D . ? HOH X 213 . ? 1_555 ? 26 AC1 27 HOH D . ? HOH X 215 . ? 1_555 ? 27 AC1 27 XCF C . ? XCF X 300 . ? 1_555 ? 28 AC2 11 LEU A 5 ? LEU X 5 . ? 1_555 ? 29 AC2 11 VAL A 6 ? VAL X 6 . ? 1_555 ? 30 AC2 11 ALA A 7 ? ALA X 7 . ? 1_555 ? 31 AC2 11 LEU A 20 ? LEU X 20 . ? 1_555 ? 32 AC2 11 ASP A 27 ? ASP X 27 . ? 1_555 ? 33 AC2 11 LEU A 28 ? LEU X 28 . ? 1_555 ? 34 AC2 11 VAL A 31 ? VAL X 31 . ? 1_555 ? 35 AC2 11 LEU A 54 ? LEU X 54 . ? 1_555 ? 36 AC2 11 PHE A 92 ? PHE X 92 . ? 1_555 ? 37 AC2 11 HOH D . ? HOH X 164 . ? 1_555 ? 38 AC2 11 NDP B . ? NDP X 301 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FYW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FYW _atom_sites.fract_transf_matrix[1][1] 0.012644 _atom_sites.fract_transf_matrix[1][2] 0.007300 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014600 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009221 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR X . n A 1 2 LEU 2 2 2 LEU LEU X . n A 1 3 SER 3 3 3 SER SER X . n A 1 4 ILE 4 4 4 ILE ILE X . n A 1 5 LEU 5 5 5 LEU LEU X . n A 1 6 VAL 6 6 6 VAL VAL X . n A 1 7 ALA 7 7 7 ALA ALA X . n A 1 8 HIS 8 8 8 HIS HIS X . n A 1 9 ASP 9 9 9 ASP ASP X . n A 1 10 LEU 10 10 10 LEU LEU X . n A 1 11 GLN 11 11 11 GLN GLN X . n A 1 12 ARG 12 12 12 ARG ARG X . n A 1 13 VAL 13 13 13 VAL VAL X . n A 1 14 ILE 14 14 14 ILE ILE X . n A 1 15 GLY 15 15 15 GLY GLY X . n A 1 16 PHE 16 16 16 PHE PHE X . n A 1 17 GLU 17 17 17 GLU GLU X . n A 1 18 ASN 18 18 18 ASN ASN X . n A 1 19 GLN 19 19 19 GLN GLN X . n A 1 20 LEU 20 20 20 LEU LEU X . n A 1 21 PRO 21 21 21 PRO PRO X . n A 1 22 TRP 22 22 22 TRP TRP X . n A 1 23 HIS 23 23 23 HIS HIS X . n A 1 24 LEU 24 24 24 LEU LEU X . n A 1 25 PRO 25 25 25 PRO PRO X . n A 1 26 ASN 26 26 26 ASN ASN X . n A 1 27 ASP 27 27 27 ASP ASP X . n A 1 28 LEU 28 28 28 LEU LEU X . n A 1 29 LYS 29 29 29 LYS LYS X . n A 1 30 HIS 30 30 30 HIS HIS X . n A 1 31 VAL 31 31 31 VAL VAL X . n A 1 32 LYS 32 32 32 LYS LYS X . n A 1 33 LYS 33 33 33 LYS LYS X . n A 1 34 LEU 34 34 34 LEU LEU X . n A 1 35 SER 35 35 35 SER SER X . n A 1 36 THR 36 36 36 THR THR X . n A 1 37 GLY 37 37 37 GLY GLY X . n A 1 38 HIS 38 38 38 HIS HIS X . n A 1 39 THR 39 39 39 THR THR X . n A 1 40 LEU 40 40 40 LEU LEU X . n A 1 41 VAL 41 41 41 VAL VAL X . n A 1 42 MET 42 42 42 MET MET X . n A 1 43 GLY 43 43 43 GLY GLY X . n A 1 44 ARG 44 44 44 ARG ARG X . n A 1 45 LYS 45 45 45 LYS LYS X . n A 1 46 THR 46 46 46 THR THR X . n A 1 47 PHE 47 47 47 PHE PHE X . n A 1 48 GLU 48 48 48 GLU GLU X . n A 1 49 SER 49 49 49 SER SER X . n A 1 50 ILE 50 50 50 ILE ILE X . n A 1 51 GLY 51 51 51 GLY GLY X . n A 1 52 LYS 52 52 52 LYS LYS X . n A 1 53 PRO 53 53 53 PRO PRO X . n A 1 54 LEU 54 54 54 LEU LEU X . n A 1 55 PRO 55 55 55 PRO PRO X . n A 1 56 ASN 56 56 56 ASN ASN X . n A 1 57 ARG 57 57 57 ARG ARG X . n A 1 58 ARG 58 58 58 ARG ARG X . n A 1 59 ASN 59 59 59 ASN ASN X . n A 1 60 VAL 60 60 60 VAL VAL X . n A 1 61 VAL 61 61 61 VAL VAL X . n A 1 62 LEU 62 62 62 LEU LEU X . n A 1 63 THR 63 63 63 THR THR X . n A 1 64 SER 64 64 64 SER SER X . n A 1 65 ASP 65 65 65 ASP ASP X . n A 1 66 THR 66 66 66 THR THR X . n A 1 67 SER 67 67 67 SER SER X . n A 1 68 PHE 68 68 68 PHE PHE X . n A 1 69 ASN 69 69 69 ASN ASN X . n A 1 70 VAL 70 70 70 VAL VAL X . n A 1 71 GLU 71 71 71 GLU GLU X . n A 1 72 GLY 72 72 72 GLY GLY X . n A 1 73 VAL 73 73 73 VAL VAL X . n A 1 74 ASP 74 74 74 ASP ASP X . n A 1 75 VAL 75 75 75 VAL VAL X . n A 1 76 ILE 76 76 76 ILE ILE X . n A 1 77 HIS 77 77 77 HIS HIS X . n A 1 78 SER 78 78 78 SER SER X . n A 1 79 ILE 79 79 79 ILE ILE X . n A 1 80 GLU 80 80 80 GLU GLU X . n A 1 81 ASP 81 81 81 ASP ASP X . n A 1 82 ILE 82 82 82 ILE ILE X . n A 1 83 TYR 83 83 83 TYR TYR X . n A 1 84 GLN 84 84 84 GLN GLN X . n A 1 85 LEU 85 85 85 LEU LEU X . n A 1 86 PRO 86 86 86 PRO PRO X . n A 1 87 GLY 87 87 87 GLY GLY X . n A 1 88 HIS 88 88 88 HIS HIS X . n A 1 89 VAL 89 89 89 VAL VAL X . n A 1 90 PHE 90 90 90 PHE PHE X . n A 1 91 ILE 91 91 91 ILE ILE X . n A 1 92 PHE 92 92 92 PHE PHE X . n A 1 93 GLY 93 93 93 GLY GLY X . n A 1 94 GLY 94 94 94 GLY GLY X . n A 1 95 GLN 95 95 95 GLN GLN X . n A 1 96 THR 96 96 96 THR THR X . n A 1 97 LEU 97 97 97 LEU LEU X . n A 1 98 PHE 98 98 98 PHE PHE X . n A 1 99 GLU 99 99 99 GLU GLU X . n A 1 100 GLU 100 100 100 GLU GLU X . n A 1 101 MET 101 101 101 MET MET X . n A 1 102 ILE 102 102 102 ILE ILE X . n A 1 103 ASP 103 103 103 ASP ASP X . n A 1 104 LYS 104 104 104 LYS LYS X . n A 1 105 VAL 105 105 105 VAL VAL X . n A 1 106 ASP 106 106 106 ASP ASP X . n A 1 107 ASP 107 107 107 ASP ASP X . n A 1 108 MET 108 108 108 MET MET X . n A 1 109 TYR 109 109 109 TYR TYR X . n A 1 110 ILE 110 110 110 ILE ILE X . n A 1 111 THR 111 111 111 THR THR X . n A 1 112 VAL 112 112 112 VAL VAL X . n A 1 113 ILE 113 113 113 ILE ILE X . n A 1 114 GLU 114 114 114 GLU GLU X . n A 1 115 GLY 115 115 115 GLY GLY X . n A 1 116 LYS 116 116 116 LYS LYS X . n A 1 117 PHE 117 117 117 PHE PHE X . n A 1 118 ARG 118 118 118 ARG ARG X . n A 1 119 GLY 119 119 119 GLY GLY X . n A 1 120 ASP 120 120 120 ASP ASP X . n A 1 121 THR 121 121 121 THR THR X . n A 1 122 PHE 122 122 122 PHE PHE X . n A 1 123 PHE 123 123 123 PHE PHE X . n A 1 124 PRO 124 124 124 PRO PRO X . n A 1 125 PRO 125 125 125 PRO PRO X . n A 1 126 TYR 126 126 126 TYR TYR X . n A 1 127 THR 127 127 127 THR THR X . n A 1 128 PHE 128 128 128 PHE PHE X . n A 1 129 GLU 129 129 129 GLU GLU X . n A 1 130 ASP 130 130 130 ASP ASP X . n A 1 131 TRP 131 131 131 TRP TRP X . n A 1 132 GLU 132 132 132 GLU GLU X . n A 1 133 VAL 133 133 133 VAL VAL X . n A 1 134 ALA 134 134 134 ALA ALA X . n A 1 135 SER 135 135 135 SER SER X . n A 1 136 SER 136 136 136 SER SER X . n A 1 137 VAL 137 137 137 VAL VAL X . n A 1 138 GLU 138 138 138 GLU GLU X . n A 1 139 GLY 139 139 139 GLY GLY X . n A 1 140 LYS 140 140 140 LYS LYS X . n A 1 141 LEU 141 141 141 LEU LEU X . n A 1 142 ASP 142 142 142 ASP ASP X . n A 1 143 GLU 143 143 143 GLU GLU X . n A 1 144 LYS 144 144 144 LYS LYS X . n A 1 145 ASN 145 145 145 ASN ASN X . n A 1 146 THR 146 146 146 THR THR X . n A 1 147 ILE 147 147 147 ILE ILE X . n A 1 148 PRO 148 148 148 PRO PRO X . n A 1 149 HIS 149 149 149 HIS HIS X . n A 1 150 THR 150 150 150 THR THR X . n A 1 151 PHE 151 151 151 PHE PHE X . n A 1 152 LEU 152 152 152 LEU LEU X . n A 1 153 HIS 153 153 153 HIS HIS X . n A 1 154 LEU 154 154 154 LEU LEU X . n A 1 155 ILE 155 155 155 ILE ILE X . n A 1 156 ARG 156 156 156 ARG ARG X . n A 1 157 LYS 157 157 157 LYS LYS X . n A 1 158 LYS 158 158 158 LYS LYS X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP 1 301 301 NDP NAP X . C 3 XCF 1 300 300 XCF XCP X . D 4 HOH 1 159 1 HOH HOH X . D 4 HOH 2 160 3 HOH HOH X . D 4 HOH 3 161 4 HOH HOH X . D 4 HOH 4 162 5 HOH HOH X . D 4 HOH 5 163 6 HOH HOH X . D 4 HOH 6 164 7 HOH HOH X . D 4 HOH 7 165 8 HOH HOH X . D 4 HOH 8 166 9 HOH HOH X . D 4 HOH 9 167 11 HOH HOH X . D 4 HOH 10 168 12 HOH HOH X . D 4 HOH 11 169 13 HOH HOH X . D 4 HOH 12 170 14 HOH HOH X . D 4 HOH 13 171 15 HOH HOH X . D 4 HOH 14 172 16 HOH HOH X . D 4 HOH 15 173 17 HOH HOH X . D 4 HOH 16 174 18 HOH HOH X . D 4 HOH 17 175 19 HOH HOH X . D 4 HOH 18 176 20 HOH HOH X . D 4 HOH 19 177 21 HOH HOH X . D 4 HOH 20 178 22 HOH HOH X . D 4 HOH 21 179 23 HOH HOH X . D 4 HOH 22 180 24 HOH HOH X . D 4 HOH 23 181 25 HOH HOH X . D 4 HOH 24 182 27 HOH HOH X . D 4 HOH 25 183 29 HOH HOH X . D 4 HOH 26 184 32 HOH HOH X . D 4 HOH 27 185 33 HOH HOH X . D 4 HOH 28 186 34 HOH HOH X . D 4 HOH 29 187 35 HOH HOH X . D 4 HOH 30 188 36 HOH HOH X . D 4 HOH 31 189 37 HOH HOH X . D 4 HOH 32 190 38 HOH HOH X . D 4 HOH 33 191 39 HOH HOH X . D 4 HOH 34 192 42 HOH HOH X . D 4 HOH 35 193 43 HOH HOH X . D 4 HOH 36 194 44 HOH HOH X . D 4 HOH 37 195 45 HOH HOH X . D 4 HOH 38 196 46 HOH HOH X . D 4 HOH 39 197 48 HOH HOH X . D 4 HOH 40 198 49 HOH HOH X . D 4 HOH 41 199 50 HOH HOH X . D 4 HOH 42 200 51 HOH HOH X . D 4 HOH 43 201 52 HOH HOH X . D 4 HOH 44 202 53 HOH HOH X . D 4 HOH 45 203 54 HOH HOH X . D 4 HOH 46 204 55 HOH HOH X . D 4 HOH 47 205 56 HOH HOH X . D 4 HOH 48 206 57 HOH HOH X . D 4 HOH 49 207 58 HOH HOH X . D 4 HOH 50 208 59 HOH HOH X . D 4 HOH 51 209 60 HOH HOH X . D 4 HOH 52 210 61 HOH HOH X . D 4 HOH 53 211 62 HOH HOH X . D 4 HOH 54 212 63 HOH HOH X . D 4 HOH 55 213 64 HOH HOH X . D 4 HOH 56 214 65 HOH HOH X . D 4 HOH 57 215 66 HOH HOH X . D 4 HOH 58 216 67 HOH HOH X . D 4 HOH 59 217 68 HOH HOH X . D 4 HOH 60 218 69 HOH HOH X . D 4 HOH 61 219 70 HOH HOH X . D 4 HOH 62 220 71 HOH HOH X . D 4 HOH 63 221 72 HOH HOH X . D 4 HOH 64 222 73 HOH HOH X . D 4 HOH 65 223 74 HOH HOH X . D 4 HOH 66 224 75 HOH HOH X . D 4 HOH 67 225 76 HOH HOH X . D 4 HOH 68 226 78 HOH HOH X . D 4 HOH 69 227 79 HOH HOH X . D 4 HOH 70 228 80 HOH HOH X . D 4 HOH 71 229 81 HOH HOH X . D 4 HOH 72 230 82 HOH HOH X . D 4 HOH 73 231 83 HOH HOH X . D 4 HOH 74 232 84 HOH HOH X . D 4 HOH 75 233 85 HOH HOH X . D 4 HOH 76 234 86 HOH HOH X . D 4 HOH 77 235 87 HOH HOH X . D 4 HOH 78 236 88 HOH HOH X . D 4 HOH 79 237 89 HOH HOH X . D 4 HOH 80 238 90 HOH HOH X . D 4 HOH 81 239 91 HOH HOH X . D 4 HOH 82 240 92 HOH HOH X . D 4 HOH 83 241 93 HOH HOH X . D 4 HOH 84 242 94 HOH HOH X . D 4 HOH 85 243 95 HOH HOH X . D 4 HOH 86 244 96 HOH HOH X . D 4 HOH 87 245 97 HOH HOH X . D 4 HOH 88 246 98 HOH HOH X . D 4 HOH 89 247 99 HOH HOH X . D 4 HOH 90 248 100 HOH HOH X . D 4 HOH 91 249 101 HOH HOH X . D 4 HOH 92 250 102 HOH HOH X . D 4 HOH 93 251 103 HOH HOH X . D 4 HOH 94 252 104 HOH HOH X . D 4 HOH 95 253 106 HOH HOH X . D 4 HOH 96 254 107 HOH HOH X . D 4 HOH 97 255 108 HOH HOH X . D 4 HOH 98 256 109 HOH HOH X . D 4 HOH 99 257 110 HOH HOH X . D 4 HOH 100 258 111 HOH HOH X . D 4 HOH 101 259 112 HOH HOH X . D 4 HOH 102 260 113 HOH HOH X . D 4 HOH 103 261 114 HOH HOH X . D 4 HOH 104 262 115 HOH HOH X . D 4 HOH 105 263 116 HOH HOH X . D 4 HOH 106 264 117 HOH HOH X . D 4 HOH 107 265 118 HOH HOH X . D 4 HOH 108 266 119 HOH HOH X . D 4 HOH 109 267 120 HOH HOH X . D 4 HOH 110 268 121 HOH HOH X . D 4 HOH 111 269 122 HOH HOH X . D 4 HOH 112 270 123 HOH HOH X . D 4 HOH 113 271 124 HOH HOH X . D 4 HOH 114 272 125 HOH HOH X . D 4 HOH 115 273 126 HOH HOH X . D 4 HOH 116 274 127 HOH HOH X . D 4 HOH 117 275 128 HOH HOH X . D 4 HOH 118 276 129 HOH HOH X . D 4 HOH 119 277 130 HOH HOH X . D 4 HOH 120 278 131 HOH HOH X . D 4 HOH 121 279 132 HOH HOH X . D 4 HOH 122 280 133 HOH HOH X . D 4 HOH 123 281 134 HOH HOH X . D 4 HOH 124 282 135 HOH HOH X . D 4 HOH 125 283 136 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-11-20 4 'Structure model' 1 3 2014-04-23 5 'Structure model' 1 4 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 DENZO 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O X GLY 87 ? ? O X HOH 268 ? ? 1.32 2 1 O X HOH 247 ? ? O X HOH 263 ? ? 2.07 3 1 NE2 X GLN 19 ? ? O X HOH 241 ? ? 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS X 38 ? ? -125.05 -159.86 2 1 ASP X 142 ? ? -178.71 -169.26 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 X _pdbx_validate_peptide_omega.auth_seq_id_1 157 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LYS _pdbx_validate_peptide_omega.auth_asym_id_2 X _pdbx_validate_peptide_omega.auth_seq_id_2 158 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 114.62 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 NDP PA P N S 236 NDP O1A O N N 237 NDP O2A O N N 238 NDP O5B O N N 239 NDP C5B C N N 240 NDP C4B C N R 241 NDP O4B O N N 242 NDP C3B C N R 243 NDP O3B O N N 244 NDP C2B C N R 245 NDP O2B O N N 246 NDP C1B C N R 247 NDP N9A N Y N 248 NDP C8A C Y N 249 NDP N7A N Y N 250 NDP C5A C Y N 251 NDP C6A C Y N 252 NDP N6A N N N 253 NDP N1A N Y N 254 NDP C2A C Y N 255 NDP N3A N Y N 256 NDP C4A C Y N 257 NDP O3 O N N 258 NDP PN P N S 259 NDP O1N O N N 260 NDP O2N O N N 261 NDP O5D O N N 262 NDP C5D C N N 263 NDP C4D C N R 264 NDP O4D O N N 265 NDP C3D C N S 266 NDP O3D O N N 267 NDP C2D C N R 268 NDP O2D O N N 269 NDP C1D C N R 270 NDP N1N N N N 271 NDP C2N C N N 272 NDP C3N C N N 273 NDP C7N C N N 274 NDP O7N O N N 275 NDP N7N N N N 276 NDP C4N C N N 277 NDP C5N C N N 278 NDP C6N C N N 279 NDP P2B P N N 280 NDP O1X O N N 281 NDP O2X O N N 282 NDP O3X O N N 283 NDP HOA2 H N N 284 NDP H51A H N N 285 NDP H52A H N N 286 NDP H4B H N N 287 NDP H3B H N N 288 NDP HO3A H N N 289 NDP H2B H N N 290 NDP H1B H N N 291 NDP H8A H N N 292 NDP H61A H N N 293 NDP H62A H N N 294 NDP H2A H N N 295 NDP H21N H N N 296 NDP H51N H N N 297 NDP H52N H N N 298 NDP H4D H N N 299 NDP H3D H N N 300 NDP HO3N H N N 301 NDP H2D H N N 302 NDP HO2N H N N 303 NDP H1D H N N 304 NDP H2N H N N 305 NDP H71N H N N 306 NDP H72N H N N 307 NDP H41N H N N 308 NDP H42N H N N 309 NDP H5N H N N 310 NDP H6N H N N 311 NDP HOP2 H N N 312 NDP HOP3 H N N 313 PHE N N N N 314 PHE CA C N S 315 PHE C C N N 316 PHE O O N N 317 PHE CB C N N 318 PHE CG C Y N 319 PHE CD1 C Y N 320 PHE CD2 C Y N 321 PHE CE1 C Y N 322 PHE CE2 C Y N 323 PHE CZ C Y N 324 PHE OXT O N N 325 PHE H H N N 326 PHE H2 H N N 327 PHE HA H N N 328 PHE HB2 H N N 329 PHE HB3 H N N 330 PHE HD1 H N N 331 PHE HD2 H N N 332 PHE HE1 H N N 333 PHE HE2 H N N 334 PHE HZ H N N 335 PHE HXT H N N 336 PRO N N N N 337 PRO CA C N S 338 PRO C C N N 339 PRO O O N N 340 PRO CB C N N 341 PRO CG C N N 342 PRO CD C N N 343 PRO OXT O N N 344 PRO H H N N 345 PRO HA H N N 346 PRO HB2 H N N 347 PRO HB3 H N N 348 PRO HG2 H N N 349 PRO HG3 H N N 350 PRO HD2 H N N 351 PRO HD3 H N N 352 PRO HXT H N N 353 SER N N N N 354 SER CA C N S 355 SER C C N N 356 SER O O N N 357 SER CB C N N 358 SER OG O N N 359 SER OXT O N N 360 SER H H N N 361 SER H2 H N N 362 SER HA H N N 363 SER HB2 H N N 364 SER HB3 H N N 365 SER HG H N N 366 SER HXT H N N 367 THR N N N N 368 THR CA C N S 369 THR C C N N 370 THR O O N N 371 THR CB C N R 372 THR OG1 O N N 373 THR CG2 C N N 374 THR OXT O N N 375 THR H H N N 376 THR H2 H N N 377 THR HA H N N 378 THR HB H N N 379 THR HG1 H N N 380 THR HG21 H N N 381 THR HG22 H N N 382 THR HG23 H N N 383 THR HXT H N N 384 TRP N N N N 385 TRP CA C N S 386 TRP C C N N 387 TRP O O N N 388 TRP CB C N N 389 TRP CG C Y N 390 TRP CD1 C Y N 391 TRP CD2 C Y N 392 TRP NE1 N Y N 393 TRP CE2 C Y N 394 TRP CE3 C Y N 395 TRP CZ2 C Y N 396 TRP CZ3 C Y N 397 TRP CH2 C Y N 398 TRP OXT O N N 399 TRP H H N N 400 TRP H2 H N N 401 TRP HA H N N 402 TRP HB2 H N N 403 TRP HB3 H N N 404 TRP HD1 H N N 405 TRP HE1 H N N 406 TRP HE3 H N N 407 TRP HZ2 H N N 408 TRP HZ3 H N N 409 TRP HH2 H N N 410 TRP HXT H N N 411 TYR N N N N 412 TYR CA C N S 413 TYR C C N N 414 TYR O O N N 415 TYR CB C N N 416 TYR CG C Y N 417 TYR CD1 C Y N 418 TYR CD2 C Y N 419 TYR CE1 C Y N 420 TYR CE2 C Y N 421 TYR CZ C Y N 422 TYR OH O N N 423 TYR OXT O N N 424 TYR H H N N 425 TYR H2 H N N 426 TYR HA H N N 427 TYR HB2 H N N 428 TYR HB3 H N N 429 TYR HD1 H N N 430 TYR HD2 H N N 431 TYR HE1 H N N 432 TYR HE2 H N N 433 TYR HH H N N 434 TYR HXT H N N 435 VAL N N N N 436 VAL CA C N S 437 VAL C C N N 438 VAL O O N N 439 VAL CB C N N 440 VAL CG1 C N N 441 VAL CG2 C N N 442 VAL OXT O N N 443 VAL H H N N 444 VAL H2 H N N 445 VAL HA H N N 446 VAL HB H N N 447 VAL HG11 H N N 448 VAL HG12 H N N 449 VAL HG13 H N N 450 VAL HG21 H N N 451 VAL HG22 H N N 452 VAL HG23 H N N 453 VAL HXT H N N 454 XCF N4 N N N 455 XCF C3 C Y N 456 XCF N5 N Y N 457 XCF N2 N Y N 458 XCF C1 C Y N 459 XCF C8 C Y N 460 XCF C6 C Y N 461 XCF N7 N N N 462 XCF C9 C N N 463 XCF C10 C Y N 464 XCF C11 C Y N 465 XCF C27 C N N 466 XCF C28 C N N 467 XCF C14 C N S 468 XCF C24 C N N 469 XCF C25 C N N 470 XCF C26 C N N 471 XCF O13 O N N 472 XCF C12 C Y N 473 XCF C15 C Y N 474 XCF O16 O N N 475 XCF C17 C N N 476 XCF C18 C Y N 477 XCF C21 C Y N 478 XCF O19 O N N 479 XCF C20 C N N 480 XCF HN4 H N N 481 XCF HN4A H N N 482 XCF H1 H N N 483 XCF HN7 H N N 484 XCF HN7A H N N 485 XCF H9 H N N 486 XCF H9A H N N 487 XCF H27 H N N 488 XCF H28 H N N 489 XCF H14 H N N 490 XCF H24 H N N 491 XCF H25 H N N 492 XCF H25A H N N 493 XCF H26 H N N 494 XCF H26A H N N 495 XCF H17 H N N 496 XCF H17A H N N 497 XCF H17B H N N 498 XCF H21 H N N 499 XCF H20 H N N 500 XCF H20A H N N 501 XCF H20B H N N 502 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 NDP PA O1A doub N N 224 NDP PA O2A sing N N 225 NDP PA O5B sing N N 226 NDP PA O3 sing N N 227 NDP O2A HOA2 sing N N 228 NDP O5B C5B sing N N 229 NDP C5B C4B sing N N 230 NDP C5B H51A sing N N 231 NDP C5B H52A sing N N 232 NDP C4B O4B sing N N 233 NDP C4B C3B sing N N 234 NDP C4B H4B sing N N 235 NDP O4B C1B sing N N 236 NDP C3B O3B sing N N 237 NDP C3B C2B sing N N 238 NDP C3B H3B sing N N 239 NDP O3B HO3A sing N N 240 NDP C2B O2B sing N N 241 NDP C2B C1B sing N N 242 NDP C2B H2B sing N N 243 NDP O2B P2B sing N N 244 NDP C1B N9A sing N N 245 NDP C1B H1B sing N N 246 NDP N9A C8A sing Y N 247 NDP N9A C4A sing Y N 248 NDP C8A N7A doub Y N 249 NDP C8A H8A sing N N 250 NDP N7A C5A sing Y N 251 NDP C5A C6A sing Y N 252 NDP C5A C4A doub Y N 253 NDP C6A N6A sing N N 254 NDP C6A N1A doub Y N 255 NDP N6A H61A sing N N 256 NDP N6A H62A sing N N 257 NDP N1A C2A sing Y N 258 NDP C2A N3A doub Y N 259 NDP C2A H2A sing N N 260 NDP N3A C4A sing Y N 261 NDP O3 PN sing N N 262 NDP PN O1N doub N N 263 NDP PN O2N sing N N 264 NDP PN O5D sing N N 265 NDP O2N H21N sing N N 266 NDP O5D C5D sing N N 267 NDP C5D C4D sing N N 268 NDP C5D H51N sing N N 269 NDP C5D H52N sing N N 270 NDP C4D O4D sing N N 271 NDP C4D C3D sing N N 272 NDP C4D H4D sing N N 273 NDP O4D C1D sing N N 274 NDP C3D O3D sing N N 275 NDP C3D C2D sing N N 276 NDP C3D H3D sing N N 277 NDP O3D HO3N sing N N 278 NDP C2D O2D sing N N 279 NDP C2D C1D sing N N 280 NDP C2D H2D sing N N 281 NDP O2D HO2N sing N N 282 NDP C1D N1N sing N N 283 NDP C1D H1D sing N N 284 NDP N1N C2N sing N N 285 NDP N1N C6N sing N N 286 NDP C2N C3N doub N N 287 NDP C2N H2N sing N N 288 NDP C3N C7N sing N N 289 NDP C3N C4N sing N N 290 NDP C7N O7N doub N N 291 NDP C7N N7N sing N N 292 NDP N7N H71N sing N N 293 NDP N7N H72N sing N N 294 NDP C4N C5N sing N N 295 NDP C4N H41N sing N N 296 NDP C4N H42N sing N N 297 NDP C5N C6N doub N N 298 NDP C5N H5N sing N N 299 NDP C6N H6N sing N N 300 NDP P2B O1X doub N N 301 NDP P2B O2X sing N N 302 NDP P2B O3X sing N N 303 NDP O2X HOP2 sing N N 304 NDP O3X HOP3 sing N N 305 PHE N CA sing N N 306 PHE N H sing N N 307 PHE N H2 sing N N 308 PHE CA C sing N N 309 PHE CA CB sing N N 310 PHE CA HA sing N N 311 PHE C O doub N N 312 PHE C OXT sing N N 313 PHE CB CG sing N N 314 PHE CB HB2 sing N N 315 PHE CB HB3 sing N N 316 PHE CG CD1 doub Y N 317 PHE CG CD2 sing Y N 318 PHE CD1 CE1 sing Y N 319 PHE CD1 HD1 sing N N 320 PHE CD2 CE2 doub Y N 321 PHE CD2 HD2 sing N N 322 PHE CE1 CZ doub Y N 323 PHE CE1 HE1 sing N N 324 PHE CE2 CZ sing Y N 325 PHE CE2 HE2 sing N N 326 PHE CZ HZ sing N N 327 PHE OXT HXT sing N N 328 PRO N CA sing N N 329 PRO N CD sing N N 330 PRO N H sing N N 331 PRO CA C sing N N 332 PRO CA CB sing N N 333 PRO CA HA sing N N 334 PRO C O doub N N 335 PRO C OXT sing N N 336 PRO CB CG sing N N 337 PRO CB HB2 sing N N 338 PRO CB HB3 sing N N 339 PRO CG CD sing N N 340 PRO CG HG2 sing N N 341 PRO CG HG3 sing N N 342 PRO CD HD2 sing N N 343 PRO CD HD3 sing N N 344 PRO OXT HXT sing N N 345 SER N CA sing N N 346 SER N H sing N N 347 SER N H2 sing N N 348 SER CA C sing N N 349 SER CA CB sing N N 350 SER CA HA sing N N 351 SER C O doub N N 352 SER C OXT sing N N 353 SER CB OG sing N N 354 SER CB HB2 sing N N 355 SER CB HB3 sing N N 356 SER OG HG sing N N 357 SER OXT HXT sing N N 358 THR N CA sing N N 359 THR N H sing N N 360 THR N H2 sing N N 361 THR CA C sing N N 362 THR CA CB sing N N 363 THR CA HA sing N N 364 THR C O doub N N 365 THR C OXT sing N N 366 THR CB OG1 sing N N 367 THR CB CG2 sing N N 368 THR CB HB sing N N 369 THR OG1 HG1 sing N N 370 THR CG2 HG21 sing N N 371 THR CG2 HG22 sing N N 372 THR CG2 HG23 sing N N 373 THR OXT HXT sing N N 374 TRP N CA sing N N 375 TRP N H sing N N 376 TRP N H2 sing N N 377 TRP CA C sing N N 378 TRP CA CB sing N N 379 TRP CA HA sing N N 380 TRP C O doub N N 381 TRP C OXT sing N N 382 TRP CB CG sing N N 383 TRP CB HB2 sing N N 384 TRP CB HB3 sing N N 385 TRP CG CD1 doub Y N 386 TRP CG CD2 sing Y N 387 TRP CD1 NE1 sing Y N 388 TRP CD1 HD1 sing N N 389 TRP CD2 CE2 doub Y N 390 TRP CD2 CE3 sing Y N 391 TRP NE1 CE2 sing Y N 392 TRP NE1 HE1 sing N N 393 TRP CE2 CZ2 sing Y N 394 TRP CE3 CZ3 doub Y N 395 TRP CE3 HE3 sing N N 396 TRP CZ2 CH2 doub Y N 397 TRP CZ2 HZ2 sing N N 398 TRP CZ3 CH2 sing Y N 399 TRP CZ3 HZ3 sing N N 400 TRP CH2 HH2 sing N N 401 TRP OXT HXT sing N N 402 TYR N CA sing N N 403 TYR N H sing N N 404 TYR N H2 sing N N 405 TYR CA C sing N N 406 TYR CA CB sing N N 407 TYR CA HA sing N N 408 TYR C O doub N N 409 TYR C OXT sing N N 410 TYR CB CG sing N N 411 TYR CB HB2 sing N N 412 TYR CB HB3 sing N N 413 TYR CG CD1 doub Y N 414 TYR CG CD2 sing Y N 415 TYR CD1 CE1 sing Y N 416 TYR CD1 HD1 sing N N 417 TYR CD2 CE2 doub Y N 418 TYR CD2 HD2 sing N N 419 TYR CE1 CZ doub Y N 420 TYR CE1 HE1 sing N N 421 TYR CE2 CZ sing Y N 422 TYR CE2 HE2 sing N N 423 TYR CZ OH sing N N 424 TYR OH HH sing N N 425 TYR OXT HXT sing N N 426 VAL N CA sing N N 427 VAL N H sing N N 428 VAL N H2 sing N N 429 VAL CA C sing N N 430 VAL CA CB sing N N 431 VAL CA HA sing N N 432 VAL C O doub N N 433 VAL C OXT sing N N 434 VAL CB CG1 sing N N 435 VAL CB CG2 sing N N 436 VAL CB HB sing N N 437 VAL CG1 HG11 sing N N 438 VAL CG1 HG12 sing N N 439 VAL CG1 HG13 sing N N 440 VAL CG2 HG21 sing N N 441 VAL CG2 HG22 sing N N 442 VAL CG2 HG23 sing N N 443 VAL OXT HXT sing N N 444 XCF N4 C3 sing N N 445 XCF C3 N5 doub Y N 446 XCF C3 N2 sing Y N 447 XCF N5 C6 sing Y N 448 XCF N2 C1 doub Y N 449 XCF C1 C8 sing Y N 450 XCF C8 C6 doub Y N 451 XCF C8 C9 sing N N 452 XCF C6 N7 sing N N 453 XCF C9 C10 sing N N 454 XCF C10 C11 doub Y N 455 XCF C10 C21 sing Y N 456 XCF C11 C27 sing N N 457 XCF C11 C12 sing Y N 458 XCF C27 C28 doub N N 459 XCF C28 C14 sing N N 460 XCF C14 C24 sing N N 461 XCF C14 O13 sing N N 462 XCF C24 C25 sing N N 463 XCF C24 C26 sing N N 464 XCF C25 C26 sing N N 465 XCF O13 C12 sing N N 466 XCF C12 C15 doub Y N 467 XCF C15 O16 sing N N 468 XCF C15 C18 sing Y N 469 XCF O16 C17 sing N N 470 XCF C18 C21 doub Y N 471 XCF C18 O19 sing N N 472 XCF O19 C20 sing N N 473 XCF N4 HN4 sing N N 474 XCF N4 HN4A sing N N 475 XCF C1 H1 sing N N 476 XCF N7 HN7 sing N N 477 XCF N7 HN7A sing N N 478 XCF C9 H9 sing N N 479 XCF C9 H9A sing N N 480 XCF C27 H27 sing N N 481 XCF C28 H28 sing N N 482 XCF C14 H14 sing N N 483 XCF C24 H24 sing N N 484 XCF C25 H25 sing N N 485 XCF C25 H25A sing N N 486 XCF C26 H26 sing N N 487 XCF C26 H26A sing N N 488 XCF C17 H17 sing N N 489 XCF C17 H17A sing N N 490 XCF C17 H17B sing N N 491 XCF C21 H21 sing N N 492 XCF C20 H20 sing N N 493 XCF C20 H20A sing N N 494 XCF C20 H20B sing N N 495 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NDP 3 '5-[[(2R)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl]pyrimidine-2,4-diamine' XCF 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FY8 _pdbx_initial_refinement_model.details 'PDB ENTRY 3FY8' #