data_3G38 # _entry.id 3G38 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3G38 pdb_00003g38 10.2210/pdb3g38/pdb NDB PD1226 ? ? RCSB RCSB051366 ? ? WWPDB D_1000051366 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FZI '1.9 Angstrom structure of the thermophilic exonuclease III homologue Mth0212' unspecified PDB 3G00 'Mth0212 in complex with a 9bp blunt end dsDNA at 1.7 Angstrom' unspecified PDB 3G0A 'Mth0212 with two bound manganese ions' unspecified PDB 3G0R 'Complex of Mth0212 and an 8bp dsDNA with distorted ends' unspecified PDB 3G1K 'Mth0212 (WT) crystallized in a monoclinic space group' unspecified PDB 3G2C 'Mth0212 in complex with a short ssDNA (CGTA)' unspecified PDB 3G2D ;Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang ; unspecified PDB 3G3C ;Mth0212 (WT) in complex with a 6bp dsDNA containing a single one nucleotide long 3'-overhang ; unspecified PDB 3G3Y 'Mth0212 in complex with ssDNA in space group P32' unspecified PDB 3G4T 'Mth0212 (WT) in complex with a 7bp dsDNA' unspecified PDB 3G8V 'The rationally designed catalytically inactive mutant Mth0212(D151N)' unspecified PDB 3G91 '1.2 Angstrom structure of the exonuclease III homologue Mth0212' unspecified PDB 3GA6 'Mth0212 in complex with two DNA helices' unspecified # _pdbx_database_status.entry_id 3G38 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-02-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lakomek, K.' 1 'Dickmanns, A.' 2 'Ficner, R.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA' J.Mol.Biol. 399 604 617 2010 JMOBAK UK 0022-2836 0070 ? 20434457 10.1016/j.jmb.2010.04.044 1 'The Methanothermobacter thermautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease' 'Nucleic Acids Res.' 34 5325 5336 2006 NARHAD UK 0305-1048 0389 ? 17012282 10.1093/nar/gkl604 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lakomek, K.' 1 ? primary 'Dickmanns, A.' 2 ? primary 'Ciirdaeva, E.' 3 ? primary 'Schomacher, L.' 4 ? primary 'Ficner, R.' 5 ? 1 'Georg, J.' 6 ? 1 'Schomacher, L.' 7 ? 1 'Chong, J.P.J.' 8 ? 1 'Majernik, A.I.' 9 ? 1 'Raabe, M.' 10 ? 1 'Urlaub, H.' 11 ? 1 'Muller, S.' 12 ? 1 'Ciirdaeva, E.' 13 ? 1 'Kramer, W.' 14 ? 1 'Fritz, H.-J.' 15 ? # _cell.length_a 79.960 _cell.length_b 107.150 _cell.length_c 44.270 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3G38 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3G38 _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Exodeoxyribonuclease 31429.666 1 3.1.11.2 'T2A, D151N' ? ? 2 polymer syn "5'-D(*CP*CP*TP*GP*UP*GP*CP*GP*AP*T)-3'" 3021.964 1 ? ? ? ? 3 polymer syn "5'-D(*CP*GP*CP*GP*CP*AP*GP*GP*C)-3'" 2741.800 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 5 water nat water 18.015 48 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Mth0212 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPS SLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGNFNTAHREID LARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWIL SDVMGSDHCPIGLEIELLEHHHHHH ; ;MAVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPS SLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGNFNTAHREID LARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWIL SDVMGSDHCPIGLEIELLEHHHHHH ; A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DG)(DU)(DG)(DC)(DG)(DA)(DT)' CCTGUGCGAT G ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DC)(DA)(DG)(DG)(DC)' CGCGCAGGC K ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 VAL n 1 4 LEU n 1 5 LYS n 1 6 ILE n 1 7 ILE n 1 8 SER n 1 9 TRP n 1 10 ASN n 1 11 VAL n 1 12 ASN n 1 13 GLY n 1 14 LEU n 1 15 ARG n 1 16 ALA n 1 17 VAL n 1 18 HIS n 1 19 ARG n 1 20 LYS n 1 21 GLY n 1 22 PHE n 1 23 LEU n 1 24 LYS n 1 25 TRP n 1 26 PHE n 1 27 MET n 1 28 GLU n 1 29 GLU n 1 30 LYS n 1 31 PRO n 1 32 ASP n 1 33 ILE n 1 34 LEU n 1 35 CYS n 1 36 LEU n 1 37 GLN n 1 38 GLU n 1 39 ILE n 1 40 LYS n 1 41 ALA n 1 42 ALA n 1 43 PRO n 1 44 GLU n 1 45 GLN n 1 46 LEU n 1 47 PRO n 1 48 ARG n 1 49 LYS n 1 50 LEU n 1 51 ARG n 1 52 HIS n 1 53 VAL n 1 54 GLU n 1 55 GLY n 1 56 TYR n 1 57 ARG n 1 58 SER n 1 59 PHE n 1 60 PHE n 1 61 THR n 1 62 PRO n 1 63 ALA n 1 64 GLU n 1 65 ARG n 1 66 LYS n 1 67 GLY n 1 68 TYR n 1 69 SER n 1 70 GLY n 1 71 VAL n 1 72 ALA n 1 73 MET n 1 74 TYR n 1 75 THR n 1 76 LYS n 1 77 VAL n 1 78 PRO n 1 79 PRO n 1 80 SER n 1 81 SER n 1 82 LEU n 1 83 ARG n 1 84 GLU n 1 85 GLY n 1 86 PHE n 1 87 GLY n 1 88 VAL n 1 89 GLU n 1 90 ARG n 1 91 PHE n 1 92 ASP n 1 93 THR n 1 94 GLU n 1 95 GLY n 1 96 ARG n 1 97 ILE n 1 98 GLN n 1 99 ILE n 1 100 ALA n 1 101 ASP n 1 102 PHE n 1 103 ASP n 1 104 ASP n 1 105 PHE n 1 106 LEU n 1 107 LEU n 1 108 TYR n 1 109 ASN n 1 110 ILE n 1 111 TYR n 1 112 PHE n 1 113 PRO n 1 114 ASN n 1 115 GLY n 1 116 LYS n 1 117 MET n 1 118 SER n 1 119 GLU n 1 120 GLU n 1 121 ARG n 1 122 LEU n 1 123 LYS n 1 124 TYR n 1 125 LYS n 1 126 LEU n 1 127 GLU n 1 128 PHE n 1 129 TYR n 1 130 ASP n 1 131 ALA n 1 132 PHE n 1 133 LEU n 1 134 GLU n 1 135 ASP n 1 136 VAL n 1 137 ASN n 1 138 ARG n 1 139 GLU n 1 140 ARG n 1 141 ASP n 1 142 SER n 1 143 GLY n 1 144 ARG n 1 145 ASN n 1 146 VAL n 1 147 ILE n 1 148 ILE n 1 149 CYS n 1 150 GLY n 1 151 ASN n 1 152 PHE n 1 153 ASN n 1 154 THR n 1 155 ALA n 1 156 HIS n 1 157 ARG n 1 158 GLU n 1 159 ILE n 1 160 ASP n 1 161 LEU n 1 162 ALA n 1 163 ARG n 1 164 PRO n 1 165 LYS n 1 166 GLU n 1 167 ASN n 1 168 SER n 1 169 ASN n 1 170 VAL n 1 171 SER n 1 172 GLY n 1 173 PHE n 1 174 LEU n 1 175 PRO n 1 176 VAL n 1 177 GLU n 1 178 ARG n 1 179 ALA n 1 180 TRP n 1 181 ILE n 1 182 ASP n 1 183 LYS n 1 184 PHE n 1 185 ILE n 1 186 GLU n 1 187 ASN n 1 188 GLY n 1 189 TYR n 1 190 VAL n 1 191 ASP n 1 192 THR n 1 193 PHE n 1 194 ARG n 1 195 MET n 1 196 PHE n 1 197 ASN n 1 198 SER n 1 199 ASP n 1 200 PRO n 1 201 GLY n 1 202 GLN n 1 203 TYR n 1 204 THR n 1 205 TRP n 1 206 TRP n 1 207 SER n 1 208 TYR n 1 209 ARG n 1 210 THR n 1 211 ARG n 1 212 ALA n 1 213 ARG n 1 214 GLU n 1 215 ARG n 1 216 ASN n 1 217 VAL n 1 218 GLY n 1 219 TRP n 1 220 ARG n 1 221 LEU n 1 222 ASP n 1 223 TYR n 1 224 PHE n 1 225 PHE n 1 226 VAL n 1 227 ASN n 1 228 GLU n 1 229 GLU n 1 230 PHE n 1 231 LYS n 1 232 GLY n 1 233 LYS n 1 234 VAL n 1 235 LYS n 1 236 ARG n 1 237 SER n 1 238 TRP n 1 239 ILE n 1 240 LEU n 1 241 SER n 1 242 ASP n 1 243 VAL n 1 244 MET n 1 245 GLY n 1 246 SER n 1 247 ASP n 1 248 HIS n 1 249 CYS n 1 250 PRO n 1 251 ILE n 1 252 GLY n 1 253 LEU n 1 254 GLU n 1 255 ILE n 1 256 GLU n 1 257 LEU n 1 258 LEU n 1 259 GLU n 1 260 HIS n 1 261 HIS n 1 262 HIS n 1 263 HIS n 1 264 HIS n 1 265 HIS n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 DU n 2 6 DG n 2 7 DC n 2 8 DG n 2 9 DA n 2 10 DT n 3 1 DC n 3 2 DG n 3 3 DC n 3 4 DG n 3 5 DC n 3 6 DA n 3 7 DG n 3 8 DG n 3 9 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mth0212, MTH212, MTH_212' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Delta H (DSM 1053)' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanothermobacter thermautotrophicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 187420 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET_B_001-mth212 (D151N)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP O26314_METTH O26314 1 ;MTVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPS SLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREID LARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWIL SDVMGSDHCPIGLEIEL ; 1 ? 2 PDB 3G38 3G38 2 CCTGUGCGAT 1 ? 3 PDB 3G38 3G38 3 CGCGCAGGC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3G38 A 1 ? 257 ? O26314 1 ? 257 ? 1 257 2 2 3G38 G 1 ? 10 ? 3G38 1 ? 10 ? 1 10 3 3 3G38 K 1 ? 9 ? 3G38 1 ? 9 ? 1 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3G38 ALA A 2 ? UNP O26314 THR 2 'engineered mutation' 2 1 1 3G38 ASN A 151 ? UNP O26314 ASP 151 'engineered mutation' 151 2 1 3G38 LEU A 258 ? UNP O26314 ? ? 'expression tag' 258 3 1 3G38 GLU A 259 ? UNP O26314 ? ? 'expression tag' 259 4 1 3G38 HIS A 260 ? UNP O26314 ? ? 'expression tag' 260 5 1 3G38 HIS A 261 ? UNP O26314 ? ? 'expression tag' 261 6 1 3G38 HIS A 262 ? UNP O26314 ? ? 'expression tag' 262 7 1 3G38 HIS A 263 ? UNP O26314 ? ? 'expression tag' 263 8 1 3G38 HIS A 264 ? UNP O26314 ? ? 'expression tag' 264 9 1 3G38 HIS A 265 ? UNP O26314 ? ? 'expression tag' 265 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3G38 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 51.75 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;reservoir: 5% (w/v) PEG 4000, 50mM KCl, 100mM MES pH 5.6, 10mM MgCl2; complex solution: 230mM NaCl, 8mM HEPES-KOH pH 7.6, 2mM MgCl2, 3mM DTT, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 NaCl ? ? ? 1 2 1 HEPES-KOH ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 DTT ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'PEG 4000' ? ? ? 1 7 2 KCl ? ? ? 1 8 2 MES ? ? ? 1 9 2 MgCl2 ? ? ? 1 10 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-05-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.80150 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_wavelength_list 0.80150 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 # _reflns.entry_id 3G38 _reflns.d_resolution_high 2.740 _reflns.d_resolution_low 36.424 _reflns.pdbx_number_measured_all 80599 _reflns.number_obs 10553 _reflns.pdbx_Rmerge_I_obs 0.117 _reflns.pdbx_netI_over_sigmaI 5.881 _reflns.pdbx_Rsym_value 0.117 _reflns.pdbx_redundancy 7.600 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.B_iso_Wilson_estimate 54.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.number_all ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.74 2.89 ? 11708 ? 0.471 1.6 0.471 ? 7.80 ? 1497 100.00 1 1 2.89 3.06 ? 11145 ? 0.327 2.3 0.327 ? 7.80 ? 1436 100.00 2 1 3.06 3.27 ? 10480 ? 0.206 3.6 0.206 ? 7.80 ? 1343 100.00 3 1 3.27 3.54 ? 9680 ? 0.136 5.3 0.136 ? 7.80 ? 1249 100.00 4 1 3.54 3.87 ? 8948 ? 0.105 6.8 0.105 ? 7.70 ? 1166 100.00 5 1 3.87 4.33 ? 8171 ? 0.081 8.1 0.081 ? 7.70 ? 1064 100.00 6 1 4.33 5.00 ? 7191 ? 0.068 9.5 0.068 ? 7.60 ? 948 100.00 7 1 5.00 6.13 ? 6093 ? 0.076 8.5 0.076 ? 7.50 ? 817 100.00 8 1 6.13 8.66 ? 4647 ? 0.078 8.5 0.078 ? 7.30 ? 640 100.00 9 1 8.66 37.45 ? 2536 ? 0.050 10.4 0.050 ? 6.50 ? 393 98.70 10 1 # _refine.entry_id 3G38 _refine.ls_d_res_high 3.040 _refine.ls_d_res_low 34.13 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 7784 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; The DNA conformation significantly deviates from ideal geometry due to the binding to the protein molecule ; _refine.ls_R_factor_obs 0.259 _refine.ls_R_factor_R_work 0.256 _refine.ls_wR_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.328 _refine.ls_wR_factor_R_free 0.303 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 361 _refine.B_iso_mean 37.113 _refine.aniso_B[1][1] -1.410 _refine.aniso_B[2][2] 8.510 _refine.aniso_B[3][3] -7.100 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.878 _refine.correlation_coeff_Fo_to_Fc_free 0.779 _refine.overall_SU_R_free 0.594 _refine.pdbx_overall_ESU_R_Free 0.594 _refine.overall_SU_ML 0.550 _refine.overall_SU_B 30.970 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.711 _refine.B_iso_max 93.28 _refine.B_iso_min 18.88 _refine.occupancy_max 1.00 _refine.occupancy_min 0.99 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDN ENTRY 3FZI' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2143 _refine_hist.pdbx_number_atoms_nucleic_acid 326 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 2553 _refine_hist.d_res_high 3.040 _refine_hist.d_res_low 34.13 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2594 0.009 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3553 1.381 2.115 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 256 7.070 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 120 36.893 22.750 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 382 20.365 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23 19.194 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 359 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1889 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1439 0.233 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1672 0.316 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 135 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 25 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.266 0.200 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 3.040 _refine_ls_shell.d_res_low 3.119 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 519 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.277 _refine_ls_shell.R_factor_R_free 0.356 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 546 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3G38 _struct.title 'The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3G38 _struct_keywords.text ;protein-DNA complex, 3'- phosphate moiety bound, HYDROLASE-DNA COMPLEX ; _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 5 ? L N N 5 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 13 ? LYS A 20 ? GLY A 13 LYS A 20 1 ? 8 HELX_P HELX_P2 2 GLY A 21 ? GLU A 29 ? GLY A 21 GLU A 29 1 ? 9 HELX_P HELX_P3 3 ALA A 42 ? LEU A 46 ? ALA A 42 LEU A 46 5 ? 5 HELX_P HELX_P4 4 PRO A 47 ? HIS A 52 ? PRO A 47 HIS A 52 1 ? 6 HELX_P HELX_P5 5 VAL A 88 ? THR A 93 ? VAL A 88 THR A 93 1 ? 6 HELX_P HELX_P6 6 GLU A 120 ? SER A 142 ? GLU A 120 SER A 142 1 ? 23 HELX_P HELX_P7 7 ARG A 157 ? LEU A 161 ? ARG A 157 LEU A 161 5 ? 5 HELX_P HELX_P8 8 PRO A 164 ? SER A 168 ? PRO A 164 SER A 168 5 ? 5 HELX_P HELX_P9 9 LEU A 174 ? ASN A 187 ? LEU A 174 ASN A 187 1 ? 14 HELX_P HELX_P10 10 PHE A 193 ? PHE A 196 ? PHE A 193 PHE A 196 5 ? 4 HELX_P HELX_P11 11 TYR A 208 ? ASN A 216 ? TYR A 208 ASN A 216 5 ? 9 HELX_P HELX_P12 12 PHE A 230 ? VAL A 234 ? PHE A 230 VAL A 234 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 8 N1 ? ? G DC 1 K DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 8 O6 ? ? G DC 1 K DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 8 N2 ? ? G DC 1 K DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 7 N1 ? ? G DC 2 K DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 7 O6 ? ? G DC 2 K DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 7 N2 ? ? G DC 2 K DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 6 N1 ? ? G DT 3 K DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 6 N6 ? ? G DT 3 K DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 5 N3 ? ? G DG 4 K DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 5 O2 ? ? G DG 4 K DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 5 N4 ? ? G DG 4 K DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DU 5 O4 ? ? ? 1_555 C DC 3 N4 ? ? G DU 5 K DC 3 1_555 ? ? ? ? ? ? 'DU-DC MISPAIR' ? ? ? hydrog13 hydrog ? ? B DU 5 O2 ? ? ? 1_555 C DG 4 N2 ? ? G DU 5 K DG 4 1_555 ? ? ? ? ? ? 'DU-DG MISPAIR' ? ? ? hydrog14 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DG 2 N1 ? ? G DG 6 K DG 2 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 3 N3 ? ? G DG 6 K DC 3 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog16 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 2 O6 ? ? G DC 7 K DG 2 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog17 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 1 N3 ? ? G DG 8 K DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 1 O2 ? ? G DG 8 K DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 1 N4 ? ? G DG 8 K DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 57 ? THR A 61 ? ARG A 57 THR A 61 A 2 VAL A 71 ? THR A 75 ? VAL A 71 THR A 75 A 3 ILE A 33 ? GLN A 37 ? ILE A 33 GLN A 37 A 4 LYS A 5 ? ASN A 10 ? LYS A 5 ASN A 10 A 5 PRO A 250 ? GLU A 254 ? PRO A 250 GLU A 254 A 6 SER A 237 ? ILE A 239 ? SER A 237 ILE A 239 B 1 SER A 81 ? ARG A 83 ? SER A 81 ARG A 83 B 2 ILE A 97 ? ASP A 101 ? ILE A 97 ASP A 101 B 3 LEU A 106 ? TYR A 111 ? LEU A 106 TYR A 111 B 4 VAL A 146 ? ASN A 151 ? VAL A 146 ASN A 151 B 5 ASP A 222 ? ASN A 227 ? ASP A 222 ASN A 227 B 6 TYR A 189 ? ASP A 191 ? TYR A 189 ASP A 191 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 59 ? N PHE A 59 O MET A 73 ? O MET A 73 A 2 3 O TYR A 74 ? O TYR A 74 N LEU A 34 ? N LEU A 34 A 3 4 O CYS A 35 ? O CYS A 35 N ILE A 7 ? N ILE A 7 A 4 5 N ILE A 6 ? N ILE A 6 O LEU A 253 ? O LEU A 253 A 5 6 O GLY A 252 ? O GLY A 252 N TRP A 238 ? N TRP A 238 B 1 2 N ARG A 83 ? N ARG A 83 O ILE A 99 ? O ILE A 99 B 2 3 N GLN A 98 ? N GLN A 98 O ASN A 109 ? O ASN A 109 B 3 4 N TYR A 108 ? N TYR A 108 O ILE A 147 ? O ILE A 147 B 4 5 N ILE A 148 ? N ILE A 148 O PHE A 225 ? O PHE A 225 B 5 6 O VAL A 226 ? O VAL A 226 N VAL A 190 ? N VAL A 190 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 266 ? 5 'BINDING SITE FOR RESIDUE GOL A 266' AC2 Software A GOL 267 ? 2 'BINDING SITE FOR RESIDUE GOL A 267' AC3 Software A GOL 268 ? 2 'BINDING SITE FOR RESIDUE GOL A 268' AC4 Software A GOL 269 ? 3 'BINDING SITE FOR RESIDUE GOL A 269' AC5 Software A GOL 270 ? 4 'BINDING SITE FOR RESIDUE GOL A 270' AC6 Software A GOL 271 ? 4 'BINDING SITE FOR RESIDUE GOL A 271' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 51 ? ARG A 51 . ? 4_445 ? 2 AC1 5 HIS A 52 ? HIS A 52 . ? 4_445 ? 3 AC1 5 VAL A 53 ? VAL A 53 . ? 4_445 ? 4 AC1 5 TYR A 56 ? TYR A 56 . ? 4_445 ? 5 AC1 5 GLU A 186 ? GLU A 186 . ? 1_555 ? 6 AC2 2 ALA A 63 ? ALA A 63 . ? 1_555 ? 7 AC2 2 LYS A 66 ? LYS A 66 . ? 1_555 ? 8 AC3 2 LEU A 257 ? LEU A 257 . ? 1_555 ? 9 AC3 2 LEU A 258 ? LEU A 258 . ? 1_555 ? 10 AC4 3 PHE A 59 ? PHE A 59 . ? 1_555 ? 11 AC4 3 PRO A 79 ? PRO A 79 . ? 1_555 ? 12 AC4 3 HOH J . ? HOH A 309 . ? 1_555 ? 13 AC5 4 HIS A 18 ? HIS A 18 . ? 1_555 ? 14 AC5 4 ARG A 19 ? ARG A 19 . ? 1_555 ? 15 AC5 4 SER A 198 ? SER A 198 . ? 4_544 ? 16 AC5 4 ASP A 199 ? ASP A 199 . ? 4_544 ? 17 AC6 4 LYS A 235 ? LYS A 235 . ? 1_555 ? 18 AC6 4 ARG A 236 ? ARG A 236 . ? 1_555 ? 19 AC6 4 TRP A 238 ? TRP A 238 . ? 1_555 ? 20 AC6 4 GLU A 254 ? GLU A 254 . ? 1_555 ? # _atom_sites.entry_id 3G38 _atom_sites.fract_transf_matrix[1][1] 0.012506 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009333 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022589 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 MET 27 27 27 MET MET A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 CYS 35 35 35 CYS CYS A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 TYR 124 124 124 TYR TYR A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 CYS 149 149 149 CYS CYS A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 HIS 156 156 156 HIS HIS A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 PHE 173 173 173 PHE PHE A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 TRP 180 180 180 TRP TRP A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 PHE 184 184 184 PHE PHE A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 GLU 186 186 186 GLU GLU A . n A 1 187 ASN 187 187 187 ASN ASN A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 ASP 191 191 191 ASP ASP A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 PHE 193 193 193 PHE PHE A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 MET 195 195 195 MET MET A . n A 1 196 PHE 196 196 196 PHE PHE A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 SER 198 198 198 SER SER A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 GLY 201 201 201 GLY GLY A . n A 1 202 GLN 202 202 202 GLN GLN A . n A 1 203 TYR 203 203 203 TYR TYR A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 TRP 205 205 205 TRP TRP A . n A 1 206 TRP 206 206 206 TRP TRP A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 TYR 208 208 208 TYR TYR A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 THR 210 210 210 THR THR A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ARG 213 213 213 ARG ARG A . n A 1 214 GLU 214 214 214 GLU GLU A . n A 1 215 ARG 215 215 215 ARG ARG A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 TRP 219 219 219 TRP TRP A . n A 1 220 ARG 220 220 220 ARG ARG A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 PHE 224 224 224 PHE PHE A . n A 1 225 PHE 225 225 225 PHE PHE A . n A 1 226 VAL 226 226 226 VAL VAL A . n A 1 227 ASN 227 227 227 ASN ASN A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 GLU 229 229 229 GLU GLU A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 LYS 233 233 233 LYS LYS A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 LYS 235 235 235 LYS LYS A . n A 1 236 ARG 236 236 236 ARG ARG A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 TRP 238 238 238 TRP TRP A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 SER 241 241 241 SER SER A . n A 1 242 ASP 242 242 242 ASP ASP A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 MET 244 244 244 MET MET A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 SER 246 246 246 SER SER A . n A 1 247 ASP 247 247 247 ASP ASP A . n A 1 248 HIS 248 248 248 HIS HIS A . n A 1 249 CYS 249 249 249 CYS CYS A . n A 1 250 PRO 250 250 250 PRO PRO A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 GLY 252 252 252 GLY GLY A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 GLU 254 254 254 GLU GLU A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 GLU 256 256 256 GLU GLU A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 GLU 259 259 ? ? ? A . n A 1 260 HIS 260 260 ? ? ? A . n A 1 261 HIS 261 261 ? ? ? A . n A 1 262 HIS 262 262 ? ? ? A . n A 1 263 HIS 263 263 ? ? ? A . n A 1 264 HIS 264 264 ? ? ? A . n A 1 265 HIS 265 265 ? ? ? A . n B 2 1 DC 1 1 1 DC C G . n B 2 2 DC 2 2 2 DC C G . n B 2 3 DT 3 3 3 DT T G . n B 2 4 DG 4 4 4 DG G G . n B 2 5 DU 5 5 5 DU U G . n B 2 6 DG 6 6 6 DG G G . n B 2 7 DC 7 7 7 DC C G . n B 2 8 DG 8 8 8 DG G G . n B 2 9 DA 9 9 9 DA A G . n B 2 10 DT 10 10 ? ? ? G . n C 3 1 DC 1 1 1 DC C K . n C 3 2 DG 2 2 2 DG G K . n C 3 3 DC 3 3 3 DC C K . n C 3 4 DG 4 4 4 DG G K . n C 3 5 DC 5 5 5 DC C K . n C 3 6 DA 6 6 6 DA A K . n C 3 7 DG 7 7 7 DG G K . n C 3 8 DG 8 8 8 DG G K . n C 3 9 DC 9 9 ? ? ? K . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 266 1 GOL GOL A . E 4 GOL 1 267 1 GOL GOL A . F 4 GOL 1 268 1 GOL GOL A . G 4 GOL 1 269 1 GOL GOL A . H 4 GOL 1 270 1 GOL GOL A . I 4 GOL 1 271 1 GOL GOL A . J 5 HOH 1 272 1 HOH HOH A . J 5 HOH 2 273 4 HOH HOH A . J 5 HOH 3 274 5 HOH HOH A . J 5 HOH 4 275 6 HOH HOH A . J 5 HOH 5 276 8 HOH HOH A . J 5 HOH 6 277 9 HOH HOH A . J 5 HOH 7 278 11 HOH HOH A . J 5 HOH 8 279 16 HOH HOH A . J 5 HOH 9 280 17 HOH HOH A . J 5 HOH 10 281 18 HOH HOH A . J 5 HOH 11 282 19 HOH HOH A . J 5 HOH 12 283 20 HOH HOH A . J 5 HOH 13 284 21 HOH HOH A . J 5 HOH 14 285 24 HOH HOH A . J 5 HOH 15 286 25 HOH HOH A . J 5 HOH 16 287 28 HOH HOH A . J 5 HOH 17 288 2 HOH HOH A . J 5 HOH 18 289 3 HOH HOH A . J 5 HOH 19 290 4 HOH HOH A . J 5 HOH 20 291 5 HOH HOH A . J 5 HOH 21 292 7 HOH HOH A . J 5 HOH 22 293 8 HOH HOH A . J 5 HOH 23 294 9 HOH HOH A . J 5 HOH 24 295 10 HOH HOH A . J 5 HOH 25 296 11 HOH HOH A . J 5 HOH 26 297 14 HOH HOH A . J 5 HOH 27 298 15 HOH HOH A . J 5 HOH 28 299 16 HOH HOH A . J 5 HOH 29 300 18 HOH HOH A . J 5 HOH 30 301 19 HOH HOH A . J 5 HOH 31 302 20 HOH HOH A . J 5 HOH 32 303 21 HOH HOH A . J 5 HOH 33 304 22 HOH HOH A . J 5 HOH 34 305 23 HOH HOH A . J 5 HOH 35 306 25 HOH HOH A . J 5 HOH 36 307 1 HOH HOH A . J 5 HOH 37 308 2 HOH HOH A . J 5 HOH 38 309 3 HOH HOH A . J 5 HOH 39 310 4 HOH HOH A . J 5 HOH 40 311 5 HOH HOH A . J 5 HOH 41 312 15 HOH HOH A . J 5 HOH 42 313 16 HOH HOH A . J 5 HOH 43 314 18 HOH HOH A . J 5 HOH 44 315 20 HOH HOH A . K 5 HOH 1 11 6 HOH HOH G . L 5 HOH 1 13 13 HOH HOH K . L 5 HOH 2 14 14 HOH HOH K . L 5 HOH 3 29 29 HOH HOH K . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2510 ? 1 MORE -16 ? 1 'SSA (A^2)' 13180 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-02-12 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' diffrn_source 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 5 5 'Structure model' '_struct_ref_seq_dif.details' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MAR345 . ? ? ? ? 'data collection' ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 254 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GOL _pdbx_validate_close_contact.auth_seq_id_2 271 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" G DG 8 ? ? "C3'" G DG 8 ? ? 1.359 1.419 -0.060 0.006 N 2 1 C6 G DG 8 ? ? N1 G DG 8 ? ? 1.345 1.391 -0.046 0.007 N 3 1 P G DA 9 ? ? "O5'" G DA 9 ? ? 1.482 1.593 -0.111 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" G DT 3 ? ? "C4'" G DT 3 ? ? "C3'" G DT 3 ? ? 101.16 104.50 -3.34 0.40 N 2 1 "O4'" G DT 3 ? ? "C1'" G DT 3 ? ? N1 G DT 3 ? ? 114.24 108.30 5.94 0.30 N 3 1 "C3'" G DT 3 ? ? "O3'" G DT 3 ? ? P G DG 4 ? ? 130.20 119.70 10.50 1.20 Y 4 1 "O4'" G DG 4 ? ? "C4'" G DG 4 ? ? "C3'" G DG 4 ? ? 100.48 104.50 -4.02 0.40 N 5 1 "C1'" G DC 7 ? ? "O4'" G DC 7 ? ? "C4'" G DC 7 ? ? 101.54 110.10 -8.56 1.00 N 6 1 "O4'" G DC 7 ? ? "C1'" G DC 7 ? ? N1 G DC 7 ? ? 113.35 108.30 5.05 0.30 N 7 1 "O5'" G DG 8 ? ? "C5'" G DG 8 ? ? "C4'" G DG 8 ? ? 104.56 109.40 -4.84 0.80 N 8 1 "O4'" G DG 8 ? ? "C4'" G DG 8 ? ? "C3'" G DG 8 ? ? 100.03 104.50 -4.47 0.40 N 9 1 "O4'" G DG 8 ? ? "C1'" G DG 8 ? ? "C2'" G DG 8 ? ? 93.05 105.90 -12.85 0.80 N 10 1 "O4'" G DG 8 ? ? "C1'" G DG 8 ? ? N9 G DG 8 ? ? 111.21 108.30 2.91 0.30 N 11 1 "O3'" G DG 8 ? ? P G DA 9 ? ? OP2 G DA 9 ? ? 120.40 110.50 9.90 1.10 Y 12 1 OP1 G DA 9 ? ? P G DA 9 ? ? OP2 G DA 9 ? ? 107.95 119.60 -11.65 1.50 N 13 1 "C1'" K DG 2 ? ? "O4'" K DG 2 ? ? "C4'" K DG 2 ? ? 103.76 110.10 -6.34 1.00 N 14 1 "O4'" K DG 4 ? ? "C4'" K DG 4 ? ? "C3'" K DG 4 ? ? 102.04 104.50 -2.46 0.40 N 15 1 "O4'" K DG 4 ? ? "C1'" K DG 4 ? ? N9 K DG 4 ? ? 110.83 108.30 2.53 0.30 N 16 1 "C3'" K DA 6 ? ? "C2'" K DA 6 ? ? "C1'" K DA 6 ? ? 95.54 102.40 -6.86 0.80 N 17 1 "C3'" K DG 7 ? ? "C2'" K DG 7 ? ? "C1'" K DG 7 ? ? 96.47 102.40 -5.93 0.80 N 18 1 "O4'" K DG 7 ? ? "C1'" K DG 7 ? ? N9 K DG 7 ? ? 111.73 108.30 3.43 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 38 ? ? 45.87 70.28 2 1 ALA A 41 ? ? -172.45 146.89 3 1 GLU A 44 ? ? -69.34 3.25 4 1 GLU A 64 ? ? -93.79 41.69 5 1 SER A 69 ? ? 60.31 -139.46 6 1 LYS A 76 ? ? -62.31 -70.36 7 1 ASP A 104 ? ? -177.44 -42.27 8 1 LEU A 122 ? ? -60.35 -175.00 9 1 LYS A 123 ? ? 71.10 -73.34 10 1 SER A 142 ? ? -56.05 0.41 11 1 PHE A 173 ? ? -141.65 20.21 12 1 ARG A 211 ? ? 24.22 52.08 13 1 LYS A 231 ? ? -28.33 -49.15 14 1 ARG A 236 ? ? 145.92 129.53 15 1 ILE A 255 ? ? -118.01 -148.73 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 G DA 9 ? "C5'" ? B DA 9 "C5'" 2 1 Y 1 G DA 9 ? "C4'" ? B DA 9 "C4'" 3 1 Y 1 G DA 9 ? "O4'" ? B DA 9 "O4'" 4 1 Y 1 G DA 9 ? "C3'" ? B DA 9 "C3'" 5 1 Y 1 G DA 9 ? "O3'" ? B DA 9 "O3'" 6 1 Y 1 G DA 9 ? "C2'" ? B DA 9 "C2'" 7 1 Y 1 G DA 9 ? "C1'" ? B DA 9 "C1'" 8 1 Y 1 G DA 9 ? N9 ? B DA 9 N9 9 1 Y 1 G DA 9 ? C8 ? B DA 9 C8 10 1 Y 1 G DA 9 ? N7 ? B DA 9 N7 11 1 Y 1 G DA 9 ? C5 ? B DA 9 C5 12 1 Y 1 G DA 9 ? C6 ? B DA 9 C6 13 1 Y 1 G DA 9 ? N6 ? B DA 9 N6 14 1 Y 1 G DA 9 ? N1 ? B DA 9 N1 15 1 Y 1 G DA 9 ? C2 ? B DA 9 C2 16 1 Y 1 G DA 9 ? N3 ? B DA 9 N3 17 1 Y 1 G DA 9 ? C4 ? B DA 9 C4 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 259 ? A GLU 259 3 1 Y 1 A HIS 260 ? A HIS 260 4 1 Y 1 A HIS 261 ? A HIS 261 5 1 Y 1 A HIS 262 ? A HIS 262 6 1 Y 1 A HIS 263 ? A HIS 263 7 1 Y 1 A HIS 264 ? A HIS 264 8 1 Y 1 A HIS 265 ? A HIS 265 9 1 Y 1 G DT 10 ? B DT 10 10 1 Y 1 K DC 9 ? C DC 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 DU OP3 O N N 231 DU P P N N 232 DU OP1 O N N 233 DU OP2 O N N 234 DU "O5'" O N N 235 DU "C5'" C N N 236 DU "C4'" C N R 237 DU "O4'" O N N 238 DU "C3'" C N S 239 DU "O3'" O N N 240 DU "C2'" C N N 241 DU "C1'" C N R 242 DU N1 N N N 243 DU C2 C N N 244 DU O2 O N N 245 DU N3 N N N 246 DU C4 C N N 247 DU O4 O N N 248 DU C5 C N N 249 DU C6 C N N 250 DU HOP3 H N N 251 DU HOP2 H N N 252 DU "H5'" H N N 253 DU "H5''" H N N 254 DU "H4'" H N N 255 DU "H3'" H N N 256 DU "HO3'" H N N 257 DU "H2'" H N N 258 DU "H2''" H N N 259 DU "H1'" H N N 260 DU H3 H N N 261 DU H5 H N N 262 DU H6 H N N 263 GLN N N N N 264 GLN CA C N S 265 GLN C C N N 266 GLN O O N N 267 GLN CB C N N 268 GLN CG C N N 269 GLN CD C N N 270 GLN OE1 O N N 271 GLN NE2 N N N 272 GLN OXT O N N 273 GLN H H N N 274 GLN H2 H N N 275 GLN HA H N N 276 GLN HB2 H N N 277 GLN HB3 H N N 278 GLN HG2 H N N 279 GLN HG3 H N N 280 GLN HE21 H N N 281 GLN HE22 H N N 282 GLN HXT H N N 283 GLU N N N N 284 GLU CA C N S 285 GLU C C N N 286 GLU O O N N 287 GLU CB C N N 288 GLU CG C N N 289 GLU CD C N N 290 GLU OE1 O N N 291 GLU OE2 O N N 292 GLU OXT O N N 293 GLU H H N N 294 GLU H2 H N N 295 GLU HA H N N 296 GLU HB2 H N N 297 GLU HB3 H N N 298 GLU HG2 H N N 299 GLU HG3 H N N 300 GLU HE2 H N N 301 GLU HXT H N N 302 GLY N N N N 303 GLY CA C N N 304 GLY C C N N 305 GLY O O N N 306 GLY OXT O N N 307 GLY H H N N 308 GLY H2 H N N 309 GLY HA2 H N N 310 GLY HA3 H N N 311 GLY HXT H N N 312 GOL C1 C N N 313 GOL O1 O N N 314 GOL C2 C N N 315 GOL O2 O N N 316 GOL C3 C N N 317 GOL O3 O N N 318 GOL H11 H N N 319 GOL H12 H N N 320 GOL HO1 H N N 321 GOL H2 H N N 322 GOL HO2 H N N 323 GOL H31 H N N 324 GOL H32 H N N 325 GOL HO3 H N N 326 HIS N N N N 327 HIS CA C N S 328 HIS C C N N 329 HIS O O N N 330 HIS CB C N N 331 HIS CG C Y N 332 HIS ND1 N Y N 333 HIS CD2 C Y N 334 HIS CE1 C Y N 335 HIS NE2 N Y N 336 HIS OXT O N N 337 HIS H H N N 338 HIS H2 H N N 339 HIS HA H N N 340 HIS HB2 H N N 341 HIS HB3 H N N 342 HIS HD1 H N N 343 HIS HD2 H N N 344 HIS HE1 H N N 345 HIS HE2 H N N 346 HIS HXT H N N 347 HOH O O N N 348 HOH H1 H N N 349 HOH H2 H N N 350 ILE N N N N 351 ILE CA C N S 352 ILE C C N N 353 ILE O O N N 354 ILE CB C N S 355 ILE CG1 C N N 356 ILE CG2 C N N 357 ILE CD1 C N N 358 ILE OXT O N N 359 ILE H H N N 360 ILE H2 H N N 361 ILE HA H N N 362 ILE HB H N N 363 ILE HG12 H N N 364 ILE HG13 H N N 365 ILE HG21 H N N 366 ILE HG22 H N N 367 ILE HG23 H N N 368 ILE HD11 H N N 369 ILE HD12 H N N 370 ILE HD13 H N N 371 ILE HXT H N N 372 LEU N N N N 373 LEU CA C N S 374 LEU C C N N 375 LEU O O N N 376 LEU CB C N N 377 LEU CG C N N 378 LEU CD1 C N N 379 LEU CD2 C N N 380 LEU OXT O N N 381 LEU H H N N 382 LEU H2 H N N 383 LEU HA H N N 384 LEU HB2 H N N 385 LEU HB3 H N N 386 LEU HG H N N 387 LEU HD11 H N N 388 LEU HD12 H N N 389 LEU HD13 H N N 390 LEU HD21 H N N 391 LEU HD22 H N N 392 LEU HD23 H N N 393 LEU HXT H N N 394 LYS N N N N 395 LYS CA C N S 396 LYS C C N N 397 LYS O O N N 398 LYS CB C N N 399 LYS CG C N N 400 LYS CD C N N 401 LYS CE C N N 402 LYS NZ N N N 403 LYS OXT O N N 404 LYS H H N N 405 LYS H2 H N N 406 LYS HA H N N 407 LYS HB2 H N N 408 LYS HB3 H N N 409 LYS HG2 H N N 410 LYS HG3 H N N 411 LYS HD2 H N N 412 LYS HD3 H N N 413 LYS HE2 H N N 414 LYS HE3 H N N 415 LYS HZ1 H N N 416 LYS HZ2 H N N 417 LYS HZ3 H N N 418 LYS HXT H N N 419 MET N N N N 420 MET CA C N S 421 MET C C N N 422 MET O O N N 423 MET CB C N N 424 MET CG C N N 425 MET SD S N N 426 MET CE C N N 427 MET OXT O N N 428 MET H H N N 429 MET H2 H N N 430 MET HA H N N 431 MET HB2 H N N 432 MET HB3 H N N 433 MET HG2 H N N 434 MET HG3 H N N 435 MET HE1 H N N 436 MET HE2 H N N 437 MET HE3 H N N 438 MET HXT H N N 439 PHE N N N N 440 PHE CA C N S 441 PHE C C N N 442 PHE O O N N 443 PHE CB C N N 444 PHE CG C Y N 445 PHE CD1 C Y N 446 PHE CD2 C Y N 447 PHE CE1 C Y N 448 PHE CE2 C Y N 449 PHE CZ C Y N 450 PHE OXT O N N 451 PHE H H N N 452 PHE H2 H N N 453 PHE HA H N N 454 PHE HB2 H N N 455 PHE HB3 H N N 456 PHE HD1 H N N 457 PHE HD2 H N N 458 PHE HE1 H N N 459 PHE HE2 H N N 460 PHE HZ H N N 461 PHE HXT H N N 462 PRO N N N N 463 PRO CA C N S 464 PRO C C N N 465 PRO O O N N 466 PRO CB C N N 467 PRO CG C N N 468 PRO CD C N N 469 PRO OXT O N N 470 PRO H H N N 471 PRO HA H N N 472 PRO HB2 H N N 473 PRO HB3 H N N 474 PRO HG2 H N N 475 PRO HG3 H N N 476 PRO HD2 H N N 477 PRO HD3 H N N 478 PRO HXT H N N 479 SER N N N N 480 SER CA C N S 481 SER C C N N 482 SER O O N N 483 SER CB C N N 484 SER OG O N N 485 SER OXT O N N 486 SER H H N N 487 SER H2 H N N 488 SER HA H N N 489 SER HB2 H N N 490 SER HB3 H N N 491 SER HG H N N 492 SER HXT H N N 493 THR N N N N 494 THR CA C N S 495 THR C C N N 496 THR O O N N 497 THR CB C N R 498 THR OG1 O N N 499 THR CG2 C N N 500 THR OXT O N N 501 THR H H N N 502 THR H2 H N N 503 THR HA H N N 504 THR HB H N N 505 THR HG1 H N N 506 THR HG21 H N N 507 THR HG22 H N N 508 THR HG23 H N N 509 THR HXT H N N 510 TRP N N N N 511 TRP CA C N S 512 TRP C C N N 513 TRP O O N N 514 TRP CB C N N 515 TRP CG C Y N 516 TRP CD1 C Y N 517 TRP CD2 C Y N 518 TRP NE1 N Y N 519 TRP CE2 C Y N 520 TRP CE3 C Y N 521 TRP CZ2 C Y N 522 TRP CZ3 C Y N 523 TRP CH2 C Y N 524 TRP OXT O N N 525 TRP H H N N 526 TRP H2 H N N 527 TRP HA H N N 528 TRP HB2 H N N 529 TRP HB3 H N N 530 TRP HD1 H N N 531 TRP HE1 H N N 532 TRP HE3 H N N 533 TRP HZ2 H N N 534 TRP HZ3 H N N 535 TRP HH2 H N N 536 TRP HXT H N N 537 TYR N N N N 538 TYR CA C N S 539 TYR C C N N 540 TYR O O N N 541 TYR CB C N N 542 TYR CG C Y N 543 TYR CD1 C Y N 544 TYR CD2 C Y N 545 TYR CE1 C Y N 546 TYR CE2 C Y N 547 TYR CZ C Y N 548 TYR OH O N N 549 TYR OXT O N N 550 TYR H H N N 551 TYR H2 H N N 552 TYR HA H N N 553 TYR HB2 H N N 554 TYR HB3 H N N 555 TYR HD1 H N N 556 TYR HD2 H N N 557 TYR HE1 H N N 558 TYR HE2 H N N 559 TYR HH H N N 560 TYR HXT H N N 561 VAL N N N N 562 VAL CA C N S 563 VAL C C N N 564 VAL O O N N 565 VAL CB C N N 566 VAL CG1 C N N 567 VAL CG2 C N N 568 VAL OXT O N N 569 VAL H H N N 570 VAL H2 H N N 571 VAL HA H N N 572 VAL HB H N N 573 VAL HG11 H N N 574 VAL HG12 H N N 575 VAL HG13 H N N 576 VAL HG21 H N N 577 VAL HG22 H N N 578 VAL HG23 H N N 579 VAL HXT H N N 580 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 DU OP3 P sing N N 232 DU OP3 HOP3 sing N N 233 DU P OP1 doub N N 234 DU P OP2 sing N N 235 DU P "O5'" sing N N 236 DU OP2 HOP2 sing N N 237 DU "O5'" "C5'" sing N N 238 DU "C5'" "C4'" sing N N 239 DU "C5'" "H5'" sing N N 240 DU "C5'" "H5''" sing N N 241 DU "C4'" "O4'" sing N N 242 DU "C4'" "C3'" sing N N 243 DU "C4'" "H4'" sing N N 244 DU "O4'" "C1'" sing N N 245 DU "C3'" "O3'" sing N N 246 DU "C3'" "C2'" sing N N 247 DU "C3'" "H3'" sing N N 248 DU "O3'" "HO3'" sing N N 249 DU "C2'" "C1'" sing N N 250 DU "C2'" "H2'" sing N N 251 DU "C2'" "H2''" sing N N 252 DU "C1'" N1 sing N N 253 DU "C1'" "H1'" sing N N 254 DU N1 C2 sing N N 255 DU N1 C6 sing N N 256 DU C2 O2 doub N N 257 DU C2 N3 sing N N 258 DU N3 C4 sing N N 259 DU N3 H3 sing N N 260 DU C4 O4 doub N N 261 DU C4 C5 sing N N 262 DU C5 C6 doub N N 263 DU C5 H5 sing N N 264 DU C6 H6 sing N N 265 GLN N CA sing N N 266 GLN N H sing N N 267 GLN N H2 sing N N 268 GLN CA C sing N N 269 GLN CA CB sing N N 270 GLN CA HA sing N N 271 GLN C O doub N N 272 GLN C OXT sing N N 273 GLN CB CG sing N N 274 GLN CB HB2 sing N N 275 GLN CB HB3 sing N N 276 GLN CG CD sing N N 277 GLN CG HG2 sing N N 278 GLN CG HG3 sing N N 279 GLN CD OE1 doub N N 280 GLN CD NE2 sing N N 281 GLN NE2 HE21 sing N N 282 GLN NE2 HE22 sing N N 283 GLN OXT HXT sing N N 284 GLU N CA sing N N 285 GLU N H sing N N 286 GLU N H2 sing N N 287 GLU CA C sing N N 288 GLU CA CB sing N N 289 GLU CA HA sing N N 290 GLU C O doub N N 291 GLU C OXT sing N N 292 GLU CB CG sing N N 293 GLU CB HB2 sing N N 294 GLU CB HB3 sing N N 295 GLU CG CD sing N N 296 GLU CG HG2 sing N N 297 GLU CG HG3 sing N N 298 GLU CD OE1 doub N N 299 GLU CD OE2 sing N N 300 GLU OE2 HE2 sing N N 301 GLU OXT HXT sing N N 302 GLY N CA sing N N 303 GLY N H sing N N 304 GLY N H2 sing N N 305 GLY CA C sing N N 306 GLY CA HA2 sing N N 307 GLY CA HA3 sing N N 308 GLY C O doub N N 309 GLY C OXT sing N N 310 GLY OXT HXT sing N N 311 GOL C1 O1 sing N N 312 GOL C1 C2 sing N N 313 GOL C1 H11 sing N N 314 GOL C1 H12 sing N N 315 GOL O1 HO1 sing N N 316 GOL C2 O2 sing N N 317 GOL C2 C3 sing N N 318 GOL C2 H2 sing N N 319 GOL O2 HO2 sing N N 320 GOL C3 O3 sing N N 321 GOL C3 H31 sing N N 322 GOL C3 H32 sing N N 323 GOL O3 HO3 sing N N 324 HIS N CA sing N N 325 HIS N H sing N N 326 HIS N H2 sing N N 327 HIS CA C sing N N 328 HIS CA CB sing N N 329 HIS CA HA sing N N 330 HIS C O doub N N 331 HIS C OXT sing N N 332 HIS CB CG sing N N 333 HIS CB HB2 sing N N 334 HIS CB HB3 sing N N 335 HIS CG ND1 sing Y N 336 HIS CG CD2 doub Y N 337 HIS ND1 CE1 doub Y N 338 HIS ND1 HD1 sing N N 339 HIS CD2 NE2 sing Y N 340 HIS CD2 HD2 sing N N 341 HIS CE1 NE2 sing Y N 342 HIS CE1 HE1 sing N N 343 HIS NE2 HE2 sing N N 344 HIS OXT HXT sing N N 345 HOH O H1 sing N N 346 HOH O H2 sing N N 347 ILE N CA sing N N 348 ILE N H sing N N 349 ILE N H2 sing N N 350 ILE CA C sing N N 351 ILE CA CB sing N N 352 ILE CA HA sing N N 353 ILE C O doub N N 354 ILE C OXT sing N N 355 ILE CB CG1 sing N N 356 ILE CB CG2 sing N N 357 ILE CB HB sing N N 358 ILE CG1 CD1 sing N N 359 ILE CG1 HG12 sing N N 360 ILE CG1 HG13 sing N N 361 ILE CG2 HG21 sing N N 362 ILE CG2 HG22 sing N N 363 ILE CG2 HG23 sing N N 364 ILE CD1 HD11 sing N N 365 ILE CD1 HD12 sing N N 366 ILE CD1 HD13 sing N N 367 ILE OXT HXT sing N N 368 LEU N CA sing N N 369 LEU N H sing N N 370 LEU N H2 sing N N 371 LEU CA C sing N N 372 LEU CA CB sing N N 373 LEU CA HA sing N N 374 LEU C O doub N N 375 LEU C OXT sing N N 376 LEU CB CG sing N N 377 LEU CB HB2 sing N N 378 LEU CB HB3 sing N N 379 LEU CG CD1 sing N N 380 LEU CG CD2 sing N N 381 LEU CG HG sing N N 382 LEU CD1 HD11 sing N N 383 LEU CD1 HD12 sing N N 384 LEU CD1 HD13 sing N N 385 LEU CD2 HD21 sing N N 386 LEU CD2 HD22 sing N N 387 LEU CD2 HD23 sing N N 388 LEU OXT HXT sing N N 389 LYS N CA sing N N 390 LYS N H sing N N 391 LYS N H2 sing N N 392 LYS CA C sing N N 393 LYS CA CB sing N N 394 LYS CA HA sing N N 395 LYS C O doub N N 396 LYS C OXT sing N N 397 LYS CB CG sing N N 398 LYS CB HB2 sing N N 399 LYS CB HB3 sing N N 400 LYS CG CD sing N N 401 LYS CG HG2 sing N N 402 LYS CG HG3 sing N N 403 LYS CD CE sing N N 404 LYS CD HD2 sing N N 405 LYS CD HD3 sing N N 406 LYS CE NZ sing N N 407 LYS CE HE2 sing N N 408 LYS CE HE3 sing N N 409 LYS NZ HZ1 sing N N 410 LYS NZ HZ2 sing N N 411 LYS NZ HZ3 sing N N 412 LYS OXT HXT sing N N 413 MET N CA sing N N 414 MET N H sing N N 415 MET N H2 sing N N 416 MET CA C sing N N 417 MET CA CB sing N N 418 MET CA HA sing N N 419 MET C O doub N N 420 MET C OXT sing N N 421 MET CB CG sing N N 422 MET CB HB2 sing N N 423 MET CB HB3 sing N N 424 MET CG SD sing N N 425 MET CG HG2 sing N N 426 MET CG HG3 sing N N 427 MET SD CE sing N N 428 MET CE HE1 sing N N 429 MET CE HE2 sing N N 430 MET CE HE3 sing N N 431 MET OXT HXT sing N N 432 PHE N CA sing N N 433 PHE N H sing N N 434 PHE N H2 sing N N 435 PHE CA C sing N N 436 PHE CA CB sing N N 437 PHE CA HA sing N N 438 PHE C O doub N N 439 PHE C OXT sing N N 440 PHE CB CG sing N N 441 PHE CB HB2 sing N N 442 PHE CB HB3 sing N N 443 PHE CG CD1 doub Y N 444 PHE CG CD2 sing Y N 445 PHE CD1 CE1 sing Y N 446 PHE CD1 HD1 sing N N 447 PHE CD2 CE2 doub Y N 448 PHE CD2 HD2 sing N N 449 PHE CE1 CZ doub Y N 450 PHE CE1 HE1 sing N N 451 PHE CE2 CZ sing Y N 452 PHE CE2 HE2 sing N N 453 PHE CZ HZ sing N N 454 PHE OXT HXT sing N N 455 PRO N CA sing N N 456 PRO N CD sing N N 457 PRO N H sing N N 458 PRO CA C sing N N 459 PRO CA CB sing N N 460 PRO CA HA sing N N 461 PRO C O doub N N 462 PRO C OXT sing N N 463 PRO CB CG sing N N 464 PRO CB HB2 sing N N 465 PRO CB HB3 sing N N 466 PRO CG CD sing N N 467 PRO CG HG2 sing N N 468 PRO CG HG3 sing N N 469 PRO CD HD2 sing N N 470 PRO CD HD3 sing N N 471 PRO OXT HXT sing N N 472 SER N CA sing N N 473 SER N H sing N N 474 SER N H2 sing N N 475 SER CA C sing N N 476 SER CA CB sing N N 477 SER CA HA sing N N 478 SER C O doub N N 479 SER C OXT sing N N 480 SER CB OG sing N N 481 SER CB HB2 sing N N 482 SER CB HB3 sing N N 483 SER OG HG sing N N 484 SER OXT HXT sing N N 485 THR N CA sing N N 486 THR N H sing N N 487 THR N H2 sing N N 488 THR CA C sing N N 489 THR CA CB sing N N 490 THR CA HA sing N N 491 THR C O doub N N 492 THR C OXT sing N N 493 THR CB OG1 sing N N 494 THR CB CG2 sing N N 495 THR CB HB sing N N 496 THR OG1 HG1 sing N N 497 THR CG2 HG21 sing N N 498 THR CG2 HG22 sing N N 499 THR CG2 HG23 sing N N 500 THR OXT HXT sing N N 501 TRP N CA sing N N 502 TRP N H sing N N 503 TRP N H2 sing N N 504 TRP CA C sing N N 505 TRP CA CB sing N N 506 TRP CA HA sing N N 507 TRP C O doub N N 508 TRP C OXT sing N N 509 TRP CB CG sing N N 510 TRP CB HB2 sing N N 511 TRP CB HB3 sing N N 512 TRP CG CD1 doub Y N 513 TRP CG CD2 sing Y N 514 TRP CD1 NE1 sing Y N 515 TRP CD1 HD1 sing N N 516 TRP CD2 CE2 doub Y N 517 TRP CD2 CE3 sing Y N 518 TRP NE1 CE2 sing Y N 519 TRP NE1 HE1 sing N N 520 TRP CE2 CZ2 sing Y N 521 TRP CE3 CZ3 doub Y N 522 TRP CE3 HE3 sing N N 523 TRP CZ2 CH2 doub Y N 524 TRP CZ2 HZ2 sing N N 525 TRP CZ3 CH2 sing Y N 526 TRP CZ3 HZ3 sing N N 527 TRP CH2 HH2 sing N N 528 TRP OXT HXT sing N N 529 TYR N CA sing N N 530 TYR N H sing N N 531 TYR N H2 sing N N 532 TYR CA C sing N N 533 TYR CA CB sing N N 534 TYR CA HA sing N N 535 TYR C O doub N N 536 TYR C OXT sing N N 537 TYR CB CG sing N N 538 TYR CB HB2 sing N N 539 TYR CB HB3 sing N N 540 TYR CG CD1 doub Y N 541 TYR CG CD2 sing Y N 542 TYR CD1 CE1 sing Y N 543 TYR CD1 HD1 sing N N 544 TYR CD2 CE2 doub Y N 545 TYR CD2 HD2 sing N N 546 TYR CE1 CZ doub Y N 547 TYR CE1 HE1 sing N N 548 TYR CE2 CZ sing Y N 549 TYR CE2 HE2 sing N N 550 TYR CZ OH sing N N 551 TYR OH HH sing N N 552 TYR OXT HXT sing N N 553 VAL N CA sing N N 554 VAL N H sing N N 555 VAL N H2 sing N N 556 VAL CA C sing N N 557 VAL CA CB sing N N 558 VAL CA HA sing N N 559 VAL C O doub N N 560 VAL C OXT sing N N 561 VAL CB CG1 sing N N 562 VAL CB CG2 sing N N 563 VAL CB HB sing N N 564 VAL CG1 HG11 sing N N 565 VAL CG1 HG12 sing N N 566 VAL CG1 HG13 sing N N 567 VAL CG2 HG21 sing N N 568 VAL CG2 HG22 sing N N 569 VAL CG2 HG23 sing N N 570 VAL OXT HXT sing N N 571 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3G38 'double helix' 3G38 'b-form double helix' 3G38 'mismatched base pair' 3G38 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 8 1_555 -0.070 -0.153 0.469 -12.472 -23.097 -2.869 1 G_DC1:DG8_K G 1 ? K 8 ? 19 1 1 B DC 2 1_555 C DG 7 1_555 -0.536 -0.368 0.407 -16.372 -12.089 -8.615 2 G_DC2:DG7_K G 2 ? K 7 ? 19 1 1 B DT 3 1_555 C DA 6 1_555 1.168 -0.342 -0.024 -5.450 -9.180 -9.084 3 G_DT3:DA6_K G 3 ? K 6 ? 20 1 1 B DG 4 1_555 C DC 5 1_555 -1.121 -0.656 -0.762 8.784 -8.634 -5.764 4 G_DG4:DC5_K G 4 ? K 5 ? 19 1 1 B DU 5 1_555 C DG 4 1_555 -0.697 -0.487 0.284 -2.849 -24.781 -4.973 5 G_DU5:DG4_K G 5 ? K 4 ? ? 1 1 B DG 6 1_555 C DG 2 1_555 -0.419 1.278 -0.986 -16.451 -22.216 -25.134 6 G_DG6:DG2_K G 6 ? K 2 ? ? ? 1 B DG 8 1_555 C DC 1 1_555 0.440 -0.004 -0.213 -1.808 -12.620 2.138 7 G_DG8:DC1_K G 8 ? K 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 8 1_555 B DC 2 1_555 C DG 7 1_555 0.440 0.074 3.389 2.437 1.753 37.949 -0.117 -0.352 3.410 2.690 -3.740 38.064 1 GG_DC1DC2:DG7DG8_KK G 1 ? K 8 ? G 2 ? K 7 ? 1 B DC 2 1_555 C DG 7 1_555 B DT 3 1_555 C DA 6 1_555 -0.106 0.433 3.083 1.410 3.683 40.571 0.237 0.300 3.104 5.297 -2.027 40.754 2 GG_DC2DT3:DA6DG7_KK G 2 ? K 7 ? G 3 ? K 6 ? 1 B DT 3 1_555 C DA 6 1_555 B DG 4 1_555 C DC 5 1_555 0.128 0.113 2.936 4.823 15.185 20.841 -3.531 0.918 2.433 35.960 -11.422 26.179 3 GG_DT3DG4:DC5DA6_KK G 3 ? K 6 ? G 4 ? K 5 ? 1 B DG 4 1_555 C DC 5 1_555 B DU 5 1_555 C DG 4 1_555 0.026 -0.417 3.497 -7.687 -2.809 37.913 -0.259 -1.050 3.448 -4.263 11.665 38.754 4 GG_DG4DU5:DG4DC5_KK G 4 ? K 5 ? G 5 ? K 4 ? 1 B DU 5 1_555 C DG 4 1_555 B DG 6 1_555 C DG 2 1_555 0.786 -0.340 5.199 -8.898 3.524 58.439 -0.627 -1.509 5.015 3.584 9.047 59.149 5 GG_DU5DG6:DG2DG4_KK G 5 ? K 4 ? G 6 ? K 2 ? 1 B DG 6 1_555 C DG 2 1_555 B DG 8 1_555 C DC 1 1_555 0.199 -1.481 4.291 17.232 12.060 44.162 -2.979 1.448 3.632 15.069 -21.532 48.688 6 GG_DG6DG8:DC1DG2_KK G 6 ? K 2 ? G 8 ? K 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FZI _pdbx_initial_refinement_model.details 'PDN ENTRY 3FZI' #