HEADER TRANSFERASE 10-FEB-09 3G7U TITLE CRYSTAL STRUCTURE OF PUTATIVE DNA MODIFICATION METHYLTRANSFERASE TITLE 2 ENCODED WITHIN PROPHAGE CP-933R (E.COLI) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSINE-SPECIFIC METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7 EDL933; SOURCE 3 ORGANISM_TAXID: 155864; SOURCE 4 STRAIN: O157:H7 EDL933 / EHEC; SOURCE 5 ATCC: 700927; SOURCE 6 GENE: ECS1953, Z2389; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL (STRATAGENE); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS METHYLTRANSFERASE, DNA-BINDING, NAD-BINDING, STRUCTURAL GENOMICS, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, NEW YORK STRUCTURAL GENOMIX KEYWDS 3 RESEARCH CONSORTIUM, NYSGXRC, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,U.A.RAMAGOPAL,R.TORO,M.GILMORE,M.IIZUKA,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3G7U 1 REMARK REVDAT 5 10-FEB-21 3G7U 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 21-NOV-18 3G7U 1 AUTHOR REVDAT 3 01-NOV-17 3G7U 1 REMARK REVDAT 2 13-JUL-11 3G7U 1 VERSN REVDAT 1 24-FEB-09 3G7U 0 JRNL AUTH Y.PATSKOVSKY,U.A.RAMAGOPAL,R.TORO,M.GILMORE,M.IIZUKA, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF DNA MODIFICATION METHYLTRANSFERASE JRNL TITL 2 ENCODED WITHIN PROPHAGE CP-933R (E.COLI) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45597 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1460 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3329 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.643 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2965 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4034 ; 1.519 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 5.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;33.564 ;23.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;15.179 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2271 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1348 ; 0.181 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2058 ; 0.313 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 419 ; 0.197 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.158 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.202 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1825 ; 2.898 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2922 ; 4.277 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 4.435 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1096 ; 6.031 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM/POTASSIUM PHOSPHATE PH REMARK 280 6.2, 20% PEG 1000, 200MM SODIUM CHLORIDE, 10% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.17967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.35933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.35933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.17967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 84 REMARK 465 ILE A 85 REMARK 465 GLY A 86 REMARK 465 LYS A 87 REMARK 465 GLY A 88 REMARK 465 ASN A 89 REMARK 465 PRO A 90 REMARK 465 ARG A 293 REMARK 465 ALA A 294 REMARK 465 GLY A 295 REMARK 465 THR A 296 REMARK 465 ALA A 297 REMARK 465 ARG A 298 REMARK 465 ASP A 299 REMARK 465 LYS A 300 REMARK 465 GLY A 301 REMARK 465 SER A 302 REMARK 465 PHE A 303 REMARK 465 GLN A 304 REMARK 465 ALA A 305 REMARK 465 GLY A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 211 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 205 -168.43 -127.47 REMARK 500 TRP A 206 -75.29 -88.90 REMARK 500 SER A 208 154.56 -49.32 REMARK 500 SER A 212 68.16 -109.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13674A RELATED DB: TARGETDB DBREF 3G7U A 2 366 UNP Q8X8S5 Q8X8S5_ECO57 2 366 SEQADV 3G7U MET A -1 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U SER A 0 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U LEU A 1 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U GLU A 367 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U GLY A 368 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U HIS A 369 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U HIS A 370 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U HIS A 371 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U HIS A 372 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U HIS A 373 UNP Q8X8S5 EXPRESSION TAG SEQADV 3G7U HIS A 374 UNP Q8X8S5 EXPRESSION TAG SEQRES 1 A 376 MET SER LEU ASN VAL ILE ASP LEU PHE SER GLY VAL GLY SEQRES 2 A 376 GLY LEU SER LEU GLY ALA ALA ARG ALA GLY PHE ASP VAL SEQRES 3 A 376 LYS MET ALA VAL GLU ILE ASP GLN HIS ALA ILE ASN THR SEQRES 4 A 376 HIS ALA ILE ASN PHE PRO ARG SER LEU HIS VAL GLN GLU SEQRES 5 A 376 ASP VAL SER LEU LEU ASN ALA GLU ILE ILE LYS GLY PHE SEQRES 6 A 376 PHE LYS ASN ASP MET PRO ILE ASP GLY ILE ILE GLY GLY SEQRES 7 A 376 PRO PRO CYS GLN GLY PHE SER SER ILE GLY LYS GLY ASN SEQRES 8 A 376 PRO ASP ASP SER ARG ASN GLN LEU TYR MET HIS PHE TYR SEQRES 9 A 376 ARG LEU VAL SER GLU LEU GLN PRO LEU PHE PHE LEU ALA SEQRES 10 A 376 GLU ASN VAL PRO GLY ILE MET GLN GLU LYS TYR SER GLY SEQRES 11 A 376 ILE ARG ASN LYS ALA PHE ASN LEU VAL SER GLY ASP TYR SEQRES 12 A 376 ASP ILE LEU ASP PRO ILE LYS VAL LYS ALA SER ASP TYR SEQRES 13 A 376 GLY ALA PRO THR ILE ARG THR ARG TYR PHE PHE ILE GLY SEQRES 14 A 376 VAL LYS LYS SER LEU LYS LEU ASP ILE SER ASP GLU VAL SEQRES 15 A 376 PHE MET PRO LYS MET ILE ASP PRO VAL THR VAL LYS ASP SEQRES 16 A 376 ALA LEU TYR GLY LEU PRO ASP ILE ILE ASP ALA ASN TRP SEQRES 17 A 376 GLN SER ASP SER GLU SER TRP ARG THR ILE LYS LYS ASP SEQRES 18 A 376 ARG LYS GLY GLY PHE TYR GLU LYS LEU TRP GLY GLN ILE SEQRES 19 A 376 PRO ARG ASN VAL GLY ASP THR GLU SER ILE ALA LYS LEU SEQRES 20 A 376 LYS ASN ASN ILE ILE SER GLY CYS THR GLY THR LEU HIS SEQRES 21 A 376 SER LYS ILE VAL GLN GLU ARG TYR ALA SER LEU SER PHE SEQRES 22 A 376 GLY GLU THR ASP LYS ILE SER ARG SER THR ARG LEU ASP SEQRES 23 A 376 PRO ASN GLY PHE CYS PRO THR LEU ARG ALA GLY THR ALA SEQRES 24 A 376 ARG ASP LYS GLY SER PHE GLN ALA VAL ARG PRO ILE HIS SEQRES 25 A 376 PRO TYR HIS PRO ARG VAL ILE THR PRO ARG GLU ALA ALA SEQRES 26 A 376 ARG LEU GLN GLY PHE PRO ASP TRP PHE ARG PHE HIS VAL SEQRES 27 A 376 THR LYS TRP HIS SER PHE ARG GLN ILE GLY ASN SER VAL SEQRES 28 A 376 SER PRO ILE VAL ALA GLU TYR ILE LEU LYS GLY LEU TYR SEQRES 29 A 376 ASN LEU LEU ASN GLU GLY HIS HIS HIS HIS HIS HIS HET CL A 401 1 HET GOL A 402 6 HET GOL A 403 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL CL 1- FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *282(H2 O) HELIX 1 1 GLY A 11 GLY A 21 1 11 HELIX 2 2 ASP A 31 PHE A 42 1 12 HELIX 3 3 ASP A 51 LEU A 55 5 5 HELIX 4 4 ASN A 56 LYS A 65 1 10 HELIX 5 5 ASP A 91 GLN A 109 1 19 HELIX 6 6 GLN A 123 LYS A 125 5 3 HELIX 7 7 TYR A 126 GLY A 139 1 14 HELIX 8 8 SER A 152 GLY A 155 5 4 HELIX 9 9 SER A 171 LYS A 173 5 3 HELIX 10 10 SER A 177 PHE A 181 5 5 HELIX 11 11 THR A 190 LEU A 195 1 6 HELIX 12 12 GLY A 222 GLY A 230 1 9 HELIX 13 13 ASP A 238 ASN A 247 1 10 HELIX 14 14 SER A 259 SER A 268 1 10 HELIX 15 15 THR A 318 GLY A 327 1 10 HELIX 16 16 THR A 337 ASN A 347 1 11 HELIX 17 17 SER A 350 ASN A 366 1 17 SHEET 1 A 7 LEU A 46 VAL A 48 0 SHEET 2 A 7 ASP A 23 VAL A 28 1 N LYS A 25 O LEU A 46 SHEET 3 A 7 ASN A 2 LEU A 6 1 N ASP A 5 O VAL A 28 SHEET 4 A 7 GLY A 72 GLY A 75 1 O ILE A 74 N LEU A 6 SHEET 5 A 7 PHE A 112 ASN A 117 1 O LEU A 114 N ILE A 73 SHEET 6 A 7 THR A 161 LYS A 169 -1 O TYR A 163 N ASN A 117 SHEET 7 A 7 TYR A 141 ILE A 143 -1 N ASP A 142 O VAL A 168 SHEET 1 B 7 LEU A 46 VAL A 48 0 SHEET 2 B 7 ASP A 23 VAL A 28 1 N LYS A 25 O LEU A 46 SHEET 3 B 7 ASN A 2 LEU A 6 1 N ASP A 5 O VAL A 28 SHEET 4 B 7 GLY A 72 GLY A 75 1 O ILE A 74 N LEU A 6 SHEET 5 B 7 PHE A 112 ASN A 117 1 O LEU A 114 N ILE A 73 SHEET 6 B 7 THR A 161 LYS A 169 -1 O TYR A 163 N ASN A 117 SHEET 7 B 7 ILE A 147 LYS A 150 -1 N ILE A 147 O PHE A 164 SHEET 1 C 2 ASP A 203 ASN A 205 0 SHEET 2 C 2 THR A 254 THR A 256 1 O GLY A 255 N ASP A 203 SHEET 1 D 2 ARG A 214 THR A 215 0 SHEET 2 D 2 ILE A 249 ILE A 250 -1 O ILE A 250 N ARG A 214 SITE 1 AC1 4 ARG A 160 ARG A 162 SER A 350 HOH A 502 SITE 1 AC2 4 TYR A 98 ARG A 130 PHE A 134 HOH A 455 SITE 1 AC3 6 ARG A 130 ASN A 131 PHE A 134 SER A 259 SITE 2 AC3 6 LYS A 260 ILE A 261 CRYST1 79.436 79.436 126.539 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012589 0.007268 0.000000 0.00000 SCALE2 0.000000 0.014536 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007903 0.00000