HEADER ISOMERASE 19-FEB-09 3GBE TITLE CRYSTAL STRUCTURE OF THE ISOMALTULOSE SYNTHASE SMUA FROM TITLE 2 PROTAMINOBACTER RUBRUM IN COMPLEX WITH THE INHIBITOR DEOXYNOJIRIMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE ISOMERASE SMUA FROM PROTAMINOBACTER RUBRUM; COMPND 3 CHAIN: A; COMPND 4 EC: 5.4.99.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTAMINOBACTER RUBRUM; SOURCE 3 ORGANISM_TAXID: 126825; SOURCE 4 STRAIN: CBS 547.77; SOURCE 5 GENE: SMUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHWG314 KEYWDS SUCROSE ISOMERASE, GLYCOSIDE HYDROLASE, PROTAMINOBACTER RUBRUM, KEYWDS 2 DEOXYNOJIRIMYCIN COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RAVAUD,X.ROBERT,R.HASER,N.AGHAJARI REVDAT 4 01-NOV-23 3GBE 1 REMARK REVDAT 3 13-JUL-11 3GBE 1 VERSN REVDAT 2 30-JUN-09 3GBE 1 JRNL REVDAT 1 26-MAY-09 3GBE 0 JRNL AUTH S.RAVAUD,X.ROBERT,H.WATZLAWICK,R.HASER,R.MATTES,N.AGHAJARI JRNL TITL STRUCTURAL DETERMINANTS OF PRODUCT SPECIFICITY OF SUCROSE JRNL TITL 2 ISOMERASES JRNL REF FEBS LETT. V. 583 1964 2009 JRNL REFN ISSN 0014-5793 JRNL PMID 19427862 JRNL DOI 10.1016/J.FEBSLET.2009.05.002 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2265877.020 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 73890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3762 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11410 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 604 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.43000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.070 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.490 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.630 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 58.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NOJ_XPLOR.PARAM REMARK 3 PARAMETER FILE 4 : EGL_XPLOR.PARAM REMARK 3 PARAMETER FILE 5 : FLC_XPLOR.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NOJ_XPLOR.TOP REMARK 3 TOPOLOGY FILE 4 : EGL_XPLOR.TOP REMARK 3 TOPOLOGY FILE 5 : FLC_XPLOR.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3GBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : SYNCHROTRON MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73893 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22400 REMARK 200 FOR SHELL : 5.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT PHASING/RIGID BODY REMARK 200 REFINEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3GBD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-LI-CITRATE, 20% PEG3350, PH7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 GLN A 422 CG CD OE1 NE2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 GLN A 527 CG CD OE1 NE2 REMARK 470 LYS A 549 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1677 O HOH A 1846 4456 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 34 -67.68 -92.24 REMARK 500 ASN A 76 56.93 39.83 REMARK 500 PHE A 178 -131.99 -99.70 REMARK 500 THR A 215 54.94 34.80 REMARK 500 ASN A 235 63.65 -153.33 REMARK 500 VAL A 257 -62.99 -134.72 REMARK 500 ILE A 269 57.27 -105.71 REMARK 500 GLU A 287 -99.92 -122.11 REMARK 500 ARG A 306 0.48 -62.49 REMARK 500 ASN A 340 -167.56 -175.36 REMARK 500 ASP A 500 91.38 -163.31 REMARK 500 GLU A 526 32.55 -96.38 REMARK 500 GLU A 526 32.55 -97.53 REMARK 500 ASP A 535 51.35 39.73 REMARK 500 TRP A 564 16.80 58.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 9000 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NOJ A 8000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUCROSE ISOMERASE SMUA FROM PROTAMINOBACTER REMARK 900 RUBRUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN REMARK 999 DOES NOT CURRENTLY EXIST. REMARK 999 THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE DATABASE. DBREF 3GBE A 16 573 PDB 3GBE 3GBE 16 573 SEQRES 1 A 558 THR ILE PRO LYS TRP TRP LYS GLU ALA VAL PHE TYR GLN SEQRES 2 A 558 VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY ASP GLY SEQRES 3 A 558 ILE GLY ASP ILE ASN GLY ILE ILE GLU LYS LEU ASP TYR SEQRES 4 A 558 LEU LYS ALA LEU GLY ILE ASP ALA ILE TRP ILE ASN PRO SEQRES 5 A 558 HIS TYR ASP SER PRO ASN THR ASP ASN GLY TYR ASP ILE SEQRES 6 A 558 ARG ASP TYR ARG LYS ILE MET LYS GLU TYR GLY THR MET SEQRES 7 A 558 GLU ASP PHE ASP ARG LEU ILE SER GLU MET LYS LYS ARG SEQRES 8 A 558 ASN MET ARG LEU MET ILE ASP VAL VAL ILE ASN HIS THR SEQRES 9 A 558 SER ASP GLN ASN GLU TRP PHE VAL LYS SER LYS SER SER SEQRES 10 A 558 LYS ASP ASN PRO TYR ARG GLY TYR TYR PHE TRP LYS ASP SEQRES 11 A 558 ALA LYS GLU GLY GLN ALA PRO ASN ASN TYR PRO SER PHE SEQRES 12 A 558 PHE GLY GLY SER ALA TRP GLN LYS ASP GLU LYS THR ASN SEQRES 13 A 558 GLN TYR TYR LEU HIS TYR PHE ALA LYS GLN GLN PRO ASP SEQRES 14 A 558 LEU ASN TRP ASP ASN PRO LYS VAL ARG GLN ASP LEU TYR SEQRES 15 A 558 ALA MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SER GLY SEQRES 16 A 558 LEU ARG PHE ASP THR VAL ALA THR TYR SER LYS ILE PRO SEQRES 17 A 558 ASP PHE PRO ASN LEU THR GLN GLN GLN LEU LYS ASN PHE SEQRES 18 A 558 ALA ALA GLU TYR THR LYS GLY PRO ASN ILE HIS ARG TYR SEQRES 19 A 558 VAL ASN GLU MET ASN LYS GLU VAL LEU SER HIS TYR ASP SEQRES 20 A 558 ILE ALA THR ALA GLY GLU ILE PHE GLY VAL PRO LEU ASP SEQRES 21 A 558 GLN SER ILE LYS PHE PHE ASP ARG ARG ARG ASP GLU LEU SEQRES 22 A 558 ASN ILE ALA PHE THR PHE ASP LEU ILE ARG LEU ASP ARG SEQRES 23 A 558 ASP SER ASP GLN ARG TRP ARG ARG LYS ASP TRP LYS LEU SEQRES 24 A 558 SER GLN PHE ARG GLN ILE ILE ASP ASN VAL ASP ARG THR SEQRES 25 A 558 ALA GLY GLU TYR GLY TRP ASN ALA PHE PHE LEU ASP ASN SEQRES 26 A 558 HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP ASP SEQRES 27 A 558 ARG PRO GLN TRP ARG GLU PRO SER ALA LYS ALA LEU ALA SEQRES 28 A 558 THR LEU THR LEU THR GLN ARG ALA THR PRO PHE ILE TYR SEQRES 29 A 558 GLN GLY SER GLU LEU GLY MET THR ASN TYR PRO PHE LYS SEQRES 30 A 558 ALA ILE ASP GLU PHE ASP ASP ILE GLU VAL LYS GLY PHE SEQRES 31 A 558 TRP HIS ASP TYR VAL GLU THR GLY LYS VAL LYS ALA ASP SEQRES 32 A 558 GLU PHE LEU GLN ASN VAL ARG LEU THR SER ARG ASP ASN SEQRES 33 A 558 SER ARG THR PRO PHE GLN TRP ASP GLY SER LYS ASN ALA SEQRES 34 A 558 GLY PHE THR SER GLY LYS PRO TRP PHE LYS VAL ASN PRO SEQRES 35 A 558 ASN TYR GLN GLU ILE ASN ALA VAL SER GLN VAL THR GLN SEQRES 36 A 558 PRO ASP SER VAL PHE ASN TYR TYR ARG GLN LEU ILE LYS SEQRES 37 A 558 ILE ARG HIS ASP ILE PRO ALA LEU THR TYR GLY THR TYR SEQRES 38 A 558 THR ASP LEU ASP PRO ALA ASN ASP SER VAL TYR ALA TYR SEQRES 39 A 558 THR ARG SER LEU GLY ALA GLU LYS TYR LEU VAL VAL VAL SEQRES 40 A 558 ASN PHE LYS GLU GLN MET MET ARG TYR LYS LEU PRO ASP SEQRES 41 A 558 ASN LEU SER ILE GLU LYS VAL ILE ILE ASP SER ASN SER SEQRES 42 A 558 LYS ASN VAL VAL LYS LYS ASN ASP SER LEU LEU GLU LEU SEQRES 43 A 558 LYS PRO TRP GLN SER GLY VAL TYR LYS LEU ASN GLN HET EDO A8002 4 HET EDO A8005 4 HET EDO A8006 4 HET EDO A8007 4 HET EDO A8008 4 HET EDO A8009 4 HET EDO A8010 4 HET EDO A8011 4 HET FLC A9000 13 HET NOJ A8000 11 HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETNAM NOJ 1-DEOXYNOJIRIMYCIN HETSYN EDO ETHYLENE GLYCOL HETSYN NOJ MORANOLINE FORMUL 2 EDO 8(C2 H6 O2) FORMUL 10 FLC C6 H5 O7 3- FORMUL 11 NOJ C6 H13 N O4 FORMUL 12 HOH *696(H2 O) HELIX 1 1 LYS A 19 ALA A 24 1 6 HELIX 2 2 TYR A 30 PHE A 34 5 5 HELIX 3 3 ASP A 44 LYS A 51 1 8 HELIX 4 4 LYS A 51 GLY A 59 1 9 HELIX 5 5 LYS A 88 GLY A 91 5 4 HELIX 6 6 THR A 92 ARG A 106 1 15 HELIX 7 7 ASN A 123 SER A 132 1 10 HELIX 8 8 TYR A 137 TYR A 141 5 5 HELIX 9 9 ASN A 189 ASP A 205 1 17 HELIX 10 10 THR A 215 TYR A 219 5 5 HELIX 11 11 THR A 229 LYS A 234 1 6 HELIX 12 12 ASN A 235 TYR A 240 1 6 HELIX 13 13 ASN A 245 VAL A 257 1 13 HELIX 14 14 LEU A 258 TYR A 261 5 4 HELIX 15 15 PRO A 273 ASP A 282 1 10 HELIX 16 16 ARG A 283 ASP A 286 5 4 HELIX 17 17 LYS A 313 GLY A 329 1 17 HELIX 18 18 ARG A 345 GLY A 351 1 7 HELIX 19 19 TRP A 357 LEU A 370 1 14 HELIX 20 20 GLY A 381 GLY A 385 5 5 HELIX 21 21 ALA A 393 PHE A 397 5 5 HELIX 22 22 ASP A 399 VAL A 410 1 12 HELIX 23 23 LYS A 416 SER A 428 1 13 HELIX 24 24 ARG A 429 ARG A 433 5 5 HELIX 25 25 SER A 441 PHE A 446 5 6 HELIX 26 26 ASN A 456 GLU A 461 5 6 HELIX 27 27 ASN A 463 THR A 469 1 7 HELIX 28 28 SER A 473 ILE A 488 1 16 HELIX 29 29 PRO A 489 GLY A 494 1 6 SHEET 1 A 8 ILE A 290 PHE A 292 0 SHEET 2 A 8 ALA A 264 GLU A 268 1 N THR A 265 O ILE A 290 SHEET 3 A 8 GLY A 210 PHE A 213 1 N PHE A 213 O ALA A 266 SHEET 4 A 8 ARG A 109 VAL A 114 1 N VAL A 114 O ARG A 212 SHEET 5 A 8 ALA A 62 ILE A 65 1 N ILE A 63 O MET A 111 SHEET 6 A 8 PHE A 26 VAL A 29 1 N TYR A 27 O TRP A 64 SHEET 7 A 8 THR A 375 TYR A 379 1 O ILE A 378 N PHE A 26 SHEET 8 A 8 ALA A 335 PHE A 336 1 N PHE A 336 O THR A 375 SHEET 1 B 2 TYR A 69 ASP A 70 0 SHEET 2 B 2 ASP A 82 ILE A 86 -1 O LYS A 85 N ASP A 70 SHEET 1 C 3 TRP A 143 LYS A 144 0 SHEET 2 C 3 GLN A 172 LEU A 175 -1 O TYR A 173 N LYS A 144 SHEET 3 C 3 TRP A 164 ASP A 167 -1 N ASP A 167 O GLN A 172 SHEET 1 D 5 THR A 495 ASP A 498 0 SHEET 2 D 5 VAL A 506 LEU A 513 -1 O SER A 512 N THR A 495 SHEET 3 D 5 GLU A 516 ASN A 523 -1 O VAL A 520 N TYR A 509 SHEET 4 D 5 SER A 566 LEU A 571 -1 O TYR A 569 N LEU A 519 SHEET 5 D 5 ILE A 539 SER A 546 -1 N GLU A 540 O LYS A 570 SHEET 1 E 2 MET A 529 LYS A 532 0 SHEET 2 E 2 LEU A 558 LEU A 561 -1 O LEU A 561 N MET A 529 SITE 1 AC1 9 PHE A 178 PHE A 270 ARG A 306 GLU A 401 SITE 2 AC1 9 HOH A1734 HOH A1743 HOH A1765 HOH A1799 SITE 3 AC1 9 NOJ A8000 SITE 1 AC2 5 LYS A 51 TRP A 438 HOH A1452 HOH A1814 SITE 2 AC2 5 EDO A8009 SITE 1 AC3 7 ASP A 353 ASN A 388 TYR A 389 PRO A 390 SITE 2 AC3 7 HOH A1206 HOH A1210 HOH A1593 SITE 1 AC4 4 ILE A 222 PRO A 223 ASP A 224 PHE A 225 SITE 1 AC5 5 TRP A 312 LYS A 313 LYS A 525 HOH A1231 SITE 2 AC5 5 HOH A1282 SITE 1 AC6 6 LYS A 51 TRP A 438 ASP A 439 VAL A 465 SITE 2 AC6 6 HOH A1046 EDO A8005 SITE 1 AC7 5 SER A 348 GLY A 351 ASP A 352 ASP A 353 SITE 2 AC7 5 HOH A1205 SITE 1 AC8 2 ASP A 311 TRP A 312 SITE 1 AC9 12 LYS A 169 PRO A 244 ASN A 245 ILE A 246 SITE 2 AC9 12 HIS A 247 ARG A 248 LYS A 279 ARG A 285 SITE 3 AC9 12 HOH A1134 HOH A1493 HOH A1495 HOH A1751 SITE 1 BC1 14 ASP A 75 TYR A 78 HIS A 118 PHE A 159 SITE 2 BC1 14 PHE A 178 ARG A 212 ASP A 214 GLU A 268 SITE 3 BC1 14 HIS A 341 ASP A 342 ARG A 429 HOH A1024 SITE 4 BC1 14 HOH A1743 EDO A8002 CRYST1 60.900 80.400 135.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007362 0.00000