HEADER TRANSFERASE 05-MAR-09 3GIG TITLE CRYSTAL STRUCTURE OF PHOSPHORYLATED DESKC IN COMPLEX WITH AMP-PCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR HISTIDINE KINASE DESK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ENTIRE CYTOPLASMIC REGION; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SENSOR HISTIDINE KINASE DESK; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: ENTIRE CYTOPLASMIC REGION; COMPND 11 EC: 2.7.13.3; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: PHOSPHORYLATED ENTIRE CYTOPLASMIC REGION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YOCF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE32; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 12 ORGANISM_TAXID: 1423; SOURCE 13 GENE: YOCF; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PQE32 KEYWDS FOUR-HELIX BUNDLE, GHL ATPASE DOMAIN, CELL MEMBRANE, KINASE, KEYWDS 2 MEMBRANE, PHOSPHOPROTEIN, TRANSFERASE, TRANSMEMBRANE, TWO-COMPONENT KEYWDS 3 REGULATORY SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.TRAJTENBERG,D.ALBANESI,P.M.ALZARI,A.BUSCHIAZZO,D.DE MENDOZA REVDAT 3 01-NOV-23 3GIG 1 REMARK SEQADV LINK REVDAT 2 28-JUL-10 3GIG 1 JRNL REVDAT 1 15-SEP-09 3GIG 0 JRNL AUTH D.ALBANESI,M.MARTIN,F.TRAJTENBERG,M.C.MANSILLA,A.HAOUZ, JRNL AUTH 2 P.M.ALZARI,D.DE MENDOZA,A.BUSCHIAZZO JRNL TITL STRUCTURAL PLASTICITY AND CATALYSIS REGULATION OF A JRNL TITL 2 THERMOSENSOR HISTIDINE KINASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16185 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805278 JRNL DOI 10.1073/PNAS.0906699106 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2009_02_15_2320_3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.291 REMARK 3 R VALUE (WORKING SET) : 0.287 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.150 REMARK 3 FREE R VALUE TEST SET COUNT : 896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8470 - 6.3450 1.00 1787 150 0.2260 0.2740 REMARK 3 2 6.3450 - 5.0450 1.00 1708 156 0.3210 0.3940 REMARK 3 3 5.0450 - 4.4100 0.99 1664 150 0.2620 0.3470 REMARK 3 4 4.4100 - 4.0080 0.99 1654 149 0.3070 0.3360 REMARK 3 5 4.0080 - 3.7210 0.99 1635 152 0.3500 0.3810 REMARK 3 6 3.7210 - 3.5020 1.00 1646 139 0.3630 0.3790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.25 REMARK 3 B_SOL : 79.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 147.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.12500 REMARK 3 B22 (A**2) : -18.12500 REMARK 3 B33 (A**2) : -24.15800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.027 3337 REMARK 3 ANGLE : 2.718 4178 REMARK 3 CHIRALITY : 0.167 515 REMARK 3 PLANARITY : 0.012 534 REMARK 3 DIHEDRAL : 25.660 1883 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 155:183 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2978 31.4269 3.7551 REMARK 3 T TENSOR REMARK 3 T11: 0.8516 T22: 0.2938 REMARK 3 T33: 0.5502 T12: -0.2006 REMARK 3 T13: 0.0060 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: -0.0102 L22: 0.0045 REMARK 3 L33: -0.0601 L12: -0.0071 REMARK 3 L13: -0.0187 L23: -0.0734 REMARK 3 S TENSOR REMARK 3 S11: -0.3035 S12: -0.2565 S13: -0.3787 REMARK 3 S21: -0.0161 S22: 0.1621 S23: 0.4399 REMARK 3 S31: -0.6689 S32: -0.1853 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESSEQ 165:183 REMARK 3 ORIGIN FOR THE GROUP (A): -29.2202 29.6293 -5.7633 REMARK 3 T TENSOR REMARK 3 T11: 0.4320 T22: -0.6855 REMARK 3 T33: 0.3879 T12: -1.5729 REMARK 3 T13: -0.7400 T23: -0.5824 REMARK 3 L TENSOR REMARK 3 L11: -0.0093 L22: 0.0065 REMARK 3 L33: 0.0108 L12: -0.0140 REMARK 3 L13: -0.0011 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.9992 S12: -0.4293 S13: -0.4496 REMARK 3 S21: 0.0941 S22: -0.2489 S23: 0.1007 REMARK 3 S31: 0.4120 S32: 0.4643 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A, B AND RESSEQ 184:240 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0270 59.9090 -12.7867 REMARK 3 T TENSOR REMARK 3 T11: 0.5810 T22: -1.4897 REMARK 3 T33: 0.1738 T12: -0.9930 REMARK 3 T13: 0.0496 T23: 0.2998 REMARK 3 L TENSOR REMARK 3 L11: 0.3553 L22: 0.2080 REMARK 3 L33: 0.0913 L12: -0.1702 REMARK 3 L13: 0.0102 L23: 0.0331 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.1124 S13: 0.0569 REMARK 3 S21: -0.2922 S22: -0.4601 S23: 0.3575 REMARK 3 S31: -0.0838 S32: 0.0842 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 243:367 REMARK 3 ORIGIN FOR THE GROUP (A): -37.8620 20.8516 -22.5483 REMARK 3 T TENSOR REMARK 3 T11: 0.7754 T22: 0.4494 REMARK 3 T33: 0.8299 T12: -0.2236 REMARK 3 T13: -0.0553 T23: -0.1981 REMARK 3 L TENSOR REMARK 3 L11: 0.0918 L22: -0.0190 REMARK 3 L33: 0.1538 L12: -0.0882 REMARK 3 L13: -0.0116 L23: -0.1205 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.1691 S13: -0.2462 REMARK 3 S21: 0.1477 S22: 0.2279 S23: 0.1881 REMARK 3 S31: -0.5160 S32: 0.2943 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESSEQ 243:367 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5337 36.0965 13.2488 REMARK 3 T TENSOR REMARK 3 T11: 1.1159 T22: 0.5106 REMARK 3 T33: 0.3580 T12: 0.0121 REMARK 3 T13: -0.1374 T23: -0.0973 REMARK 3 L TENSOR REMARK 3 L11: 0.0982 L22: 0.0607 REMARK 3 L33: 0.1046 L12: 0.0838 REMARK 3 L13: -0.1417 L23: -0.1476 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: -0.6980 S13: -0.0507 REMARK 3 S21: -0.3963 S22: 0.2164 S23: 0.5693 REMARK 3 S31: 0.7808 S32: 0.4133 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 245:331 OR RESSEQ REMARK 3 335:367 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 245:329 OR RESSEQ REMARK 3 332:367 ) REMARK 3 ATOM PAIRS NUMBER : 769 REMARK 3 RMSD : 0.235 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 193:230 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 193:230 ) REMARK 3 ATOM PAIRS NUMBER : 270 REMARK 3 RMSD : 0.116 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B ANISOU REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 4 REMARK 4 3GIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER MIRRORS (VARIMAX-HF) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10993 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.846 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EHG AND 3EHF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3000, MGCL2, CHES, AMP-PCP, PH 9.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.30667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.30667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 LYS A 333 REMARK 465 GLY A 334 REMARK 465 SER A 369 REMARK 465 LYS A 370 REMARK 465 GLY B 153 REMARK 465 ARG B 154 REMARK 465 LYS B 155 REMARK 465 GLU B 156 REMARK 465 ARG B 157 REMARK 465 GLU B 158 REMARK 465 ARG B 159 REMARK 465 LEU B 160 REMARK 465 GLU B 161 REMARK 465 GLU B 162 REMARK 465 LYS B 163 REMARK 465 SER B 369 REMARK 465 LYS B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 155 CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LEU A 164 CG CD1 CD2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 185 NE CZ NH1 NH2 REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 GLN A 225 CG CD OE1 NE2 REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 254 CE NZ REMARK 470 GLN A 255 CG CD OE1 NE2 REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 ASP A 261 CG OD1 OD2 REMARK 470 MET A 263 CG SD CE REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 ASN A 274 CG OD1 ND2 REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 GLN A 299 CG CD OE1 NE2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 ASN A 329 CG OD1 ND2 REMARK 470 SER A 330 OG REMARK 470 ARG A 343 CD NE CZ NH1 NH2 REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 ASN A 357 CG OD1 ND2 REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 LEU B 177 CG CD1 CD2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLN B 181 CD OE1 NE2 REMARK 470 GLN B 193 CG CD OE1 NE2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 ARG B 228 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 ILE B 237 CG1 CG2 CD1 REMARK 470 SER B 239 OG REMARK 470 ILE B 244 CG1 CG2 CD1 REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LEU B 250 CG CD1 CD2 REMARK 470 GLN B 255 CG CD OE1 NE2 REMARK 470 ILE B 256 CG1 CG2 CD1 REMARK 470 LEU B 257 CG CD1 CD2 REMARK 470 MET B 263 CG SD CE REMARK 470 PHE B 264 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 LEU B 277 CG CD1 CD2 REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 LYS B 296 CG CD CE NZ REMARK 470 LYS B 301 CG CD CE NZ REMARK 470 THR B 302 OG1 CG2 REMARK 470 ARG B 304 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 306 CG OD1 OD2 REMARK 470 GLN B 308 CG CD OE1 NE2 REMARK 470 LEU B 310 CG CD1 CD2 REMARK 470 TRP B 311 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 311 CZ3 CH2 REMARK 470 LYS B 312 CG CD CE NZ REMARK 470 GLU B 313 CD OE1 OE2 REMARK 470 ILE B 316 CG1 CG2 CD1 REMARK 470 ASP B 321 CG OD1 OD2 REMARK 470 THR B 323 OG1 CG2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 ASN B 329 CG OD1 ND2 REMARK 470 SER B 330 OG REMARK 470 PHE B 331 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 333 CG CD CE NZ REMARK 470 LEU B 338 CG CD1 CD2 REMARK 470 ARG B 341 NE CZ NH1 NH2 REMARK 470 ILE B 353 CG1 CG2 CD1 REMARK 470 GLU B 356 CG CD OE1 OE2 REMARK 470 LYS B 360 CG CD CE NZ REMARK 470 MET B 363 CG SD CE REMARK 470 ASN B 367 CG OD1 ND2 REMARK 470 ASN B 368 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 293 O2B ACP A 1303 1.82 REMARK 500 CD1 LEU B 231 NE ARG B 235 2.10 REMARK 500 CE1 HIS A 188 NH1 ARG B 235 2.12 REMARK 500 ND1 HIS A 188 NH1 ARG B 235 2.15 REMARK 500 O LEU B 231 CG ARG B 235 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 250 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 PRO A 272 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO A 272 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 LEU B 174 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 LEU B 187 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO B 272 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO B 272 C - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 172 -78.92 -58.08 REMARK 500 LEU A 187 -70.37 -42.06 REMARK 500 ASP A 189 -70.75 -37.93 REMARK 500 THR A 190 -77.66 -65.14 REMARK 500 ASP A 212 87.04 -163.31 REMARK 500 ALA A 227 -76.43 -36.52 REMARK 500 MET A 241 1.33 81.55 REMARK 500 ASP A 261 42.25 78.94 REMARK 500 GLU A 268 108.75 -59.19 REMARK 500 LYS A 270 56.79 39.47 REMARK 500 VAL A 295 24.94 -74.39 REMARK 500 HIS A 297 -36.35 -144.70 REMARK 500 TRP A 311 -132.21 59.67 REMARK 500 GLU A 327 -165.90 -76.79 REMARK 500 PHE A 331 55.44 -60.77 REMARK 500 ARG A 343 -72.57 -63.68 REMARK 500 ASN A 367 -87.58 -111.48 REMARK 500 ASN B 168 -82.43 -40.59 REMARK 500 ALA B 172 -74.92 -57.17 REMARK 500 THR B 190 -77.39 -67.38 REMARK 500 TYR B 210 -60.32 -94.12 REMARK 500 ASP B 212 82.78 -161.08 REMARK 500 ASP B 261 37.46 80.78 REMARK 500 GLU B 268 105.40 -58.70 REMARK 500 LYS B 288 -37.91 -39.60 REMARK 500 VAL B 295 26.05 -75.10 REMARK 500 HIS B 297 -35.03 -145.88 REMARK 500 TRP B 311 -134.37 53.84 REMARK 500 GLU B 327 -165.65 -76.70 REMARK 500 PHE B 331 47.75 -72.79 REMARK 500 LYS B 333 161.53 -48.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 289 OE2 REMARK 620 2 ASN A 293 OD1 98.8 REMARK 620 3 ACP A1303 O3G 82.3 102.6 REMARK 620 4 ACP A1303 O2B 150.0 52.6 94.7 REMARK 620 5 ACP A1303 O1A 111.7 90.1 159.6 80.4 REMARK 620 6 ACP A1303 O3A 151.5 108.2 100.2 58.5 60.3 REMARK 620 7 ACP A1303 O1G 105.5 146.6 59.2 98.3 101.7 54.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 289 OE2 REMARK 620 2 ASN B 293 OD1 90.2 REMARK 620 3 ACP B1303 O3G 93.9 174.9 REMARK 620 4 ACP B1303 O2B 171.9 91.7 83.8 REMARK 620 5 ACP B1303 O1A 96.7 65.6 110.8 77.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EHF RELATED DB: PDB REMARK 900 RELATED ID: 3GIE RELATED DB: PDB REMARK 900 RELATED ID: 3GIF RELATED DB: PDB DBREF 3GIG A 154 370 UNP O34757 DESK_BACSU 154 370 DBREF 3GIG B 154 370 UNP O34757 DESK_BACSU 154 370 SEQADV 3GIG GLY A 153 UNP O34757 EXPRESSION TAG SEQADV 3GIG GLY B 153 UNP O34757 EXPRESSION TAG SEQRES 1 A 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 A 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 A 218 GLU ARG GLN ARG ILE ALA ARG ASP LEU HIS ASP THR LEU SEQRES 4 A 218 GLY GLN LYS LEU SER LEU ILE GLY LEU LYS SER ASP LEU SEQRES 5 A 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 A 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 A 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MET LYS GLY SEQRES 8 A 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 A 218 LEU GLU ALA ALA ASP ILE MET PHE ILE TYR GLU GLU GLU SEQRES 10 A 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 A 218 LEU SER MET CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 A 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 A 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 A 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 A 218 HIS GLY LEU LEU GLY MET ARG GLU ARG LEU GLU PHE ALA SEQRES 16 A 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 A 218 LEU THR MET ALA ILE PRO ASN ASN SER LYS SEQRES 1 B 218 GLY ARG LYS GLU ARG GLU ARG LEU GLU GLU LYS LEU GLU SEQRES 2 B 218 ASP ALA ASN GLU ARG ILE ALA GLU LEU VAL LYS LEU GLU SEQRES 3 B 218 GLU ARG GLN ARG ILE ALA ARG ASP LEU NEP ASP THR LEU SEQRES 4 B 218 GLY GLN LYS LEU SER LEU ILE GLY LEU LYS SER ASP LEU SEQRES 5 B 218 ALA ARG LYS LEU ILE TYR LYS ASP PRO GLU GLN ALA ALA SEQRES 6 B 218 ARG GLU LEU LYS SER VAL GLN GLN THR ALA ARG THR SER SEQRES 7 B 218 LEU ASN GLU VAL ARG LYS ILE VAL SER SER MET LYS GLY SEQRES 8 B 218 ILE ARG LEU LYS ASP GLU LEU ILE ASN ILE LYS GLN ILE SEQRES 9 B 218 LEU GLU ALA ALA ASP ILE MET PHE ILE TYR GLU GLU GLU SEQRES 10 B 218 LYS TRP PRO GLU ASN ILE SER LEU LEU ASN GLU ASN ILE SEQRES 11 B 218 LEU SER MET CYS LEU LYS GLU ALA VAL THR ASN VAL VAL SEQRES 12 B 218 LYS HIS SER GLN ALA LYS THR CYS ARG VAL ASP ILE GLN SEQRES 13 B 218 GLN LEU TRP LYS GLU VAL VAL ILE THR VAL SER ASP ASP SEQRES 14 B 218 GLY THR PHE LYS GLY GLU GLU ASN SER PHE SER LYS GLY SEQRES 15 B 218 HIS GLY LEU LEU GLY MET ARG GLU ARG LEU GLU PHE ALA SEQRES 16 B 218 ASN GLY SER LEU HIS ILE ASP THR GLU ASN GLY THR LYS SEQRES 17 B 218 LEU THR MET ALA ILE PRO ASN ASN SER LYS MODRES 3GIG NEP B 188 HIS N1-PHOSPHONOHISTIDINE HET NEP B 188 14 HET ACP A1303 31 HET MG A 1 1 HET ACP B1303 31 HET MG B 1 1 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 NEP C6 H10 N3 O5 P FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 MG 2(MG 2+) HELIX 1 1 LYS A 155 ASP A 212 1 58 HELIX 2 2 ASP A 212 LYS A 236 1 25 HELIX 3 3 ARG A 245 ALA A 259 1 15 HELIX 4 4 SER A 276 SER A 298 1 23 HELIX 5 5 SER A 332 SER A 332 1 1 HELIX 6 6 HIS A 335 ALA A 347 1 13 HELIX 7 7 LEU B 164 ASP B 212 1 49 HELIX 8 8 ASP B 212 MET B 241 1 30 HELIX 9 9 GLY B 243 ALA B 259 1 17 HELIX 10 10 SER B 276 SER B 298 1 23 HELIX 11 11 HIS B 335 ALA B 347 1 13 SHEET 1 A 5 MET A 263 ILE A 265 0 SHEET 2 A 5 THR A 302 LEU A 310 1 O CYS A 303 N ILE A 265 SHEET 3 A 5 GLU A 313 ASP A 320 -1 O SER A 319 N ARG A 304 SHEET 4 A 5 THR A 359 PRO A 366 -1 O THR A 359 N ASP A 320 SHEET 5 A 5 SER A 350 ASP A 354 -1 N HIS A 352 O THR A 362 SHEET 1 B 5 MET B 263 ILE B 265 0 SHEET 2 B 5 THR B 302 LEU B 310 1 O CYS B 303 N ILE B 265 SHEET 3 B 5 GLU B 313 ASP B 320 -1 O SER B 319 N ARG B 304 SHEET 4 B 5 THR B 359 PRO B 366 -1 O LEU B 361 N VAL B 318 SHEET 5 B 5 SER B 350 ASP B 354 -1 N HIS B 352 O THR B 362 LINK C LEU B 187 N NEP B 188 1555 1555 1.32 LINK C NEP B 188 N ASP B 189 1555 1555 1.33 LINK MG MG A 1 OE2 GLU A 289 1555 1555 2.07 LINK MG MG A 1 OD1 ASN A 293 1555 1555 2.05 LINK MG MG A 1 O3G ACP A1303 1555 1555 2.06 LINK MG MG A 1 O2B ACP A1303 1555 1555 2.06 LINK MG MG A 1 O1A ACP A1303 1555 1555 2.05 LINK MG MG A 1 O3A ACP A1303 1555 1555 2.84 LINK MG MG A 1 O1G ACP A1303 1555 1555 2.91 LINK MG MG B 1 OE2 GLU B 289 1555 1555 2.05 LINK MG MG B 1 OD1 ASN B 293 1555 1555 2.08 LINK MG MG B 1 O3G ACP B1303 1555 1555 2.05 LINK MG MG B 1 O2B ACP B1303 1555 1555 2.04 LINK MG MG B 1 O1A ACP B1303 1555 1555 2.04 SITE 1 AC1 14 MG A 1 GLU A 289 ASN A 293 VAL A 294 SITE 2 AC1 14 HIS A 297 SER A 298 ASP A 320 THR A 323 SITE 3 AC1 14 PHE A 324 LYS A 325 HIS A 335 GLY A 336 SITE 4 AC1 14 LEU A 337 THR A 359 SITE 1 AC2 3 GLU A 289 ASN A 293 ACP A1303 SITE 1 AC3 14 MG B 1 GLU B 289 ASN B 293 VAL B 294 SITE 2 AC3 14 HIS B 297 SER B 298 THR B 323 PHE B 324 SITE 3 AC3 14 LYS B 325 GLY B 334 HIS B 335 GLY B 336 SITE 4 AC3 14 LEU B 337 THR B 359 SITE 1 AC4 3 GLU B 289 ASN B 293 ACP B1303 CRYST1 94.630 94.630 162.460 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010567 0.006101 0.000000 0.00000 SCALE2 0.000000 0.012202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006155 0.00000