HEADER SPLICING 06-MAR-09 3GIX TITLE CRYSTAL STRUCTURE OF HUMAN SPLICING FACTOR DIM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN-LIKE PROTEIN 4B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SPLICING FACTOR DIM2, DIM1-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DIM2, DLP, TXNL4B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29 KEYWDS PRE-MRNA SPLICING, TXNL4B, DLP, CELL CYCLE, MRNA PROCESSING, MRNA KEYWDS 2 SPLICING, NUCLEUS, PHOSPHOPROTEIN, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR T.C.JIN,F.GUO,Y.Z.ZHANG REVDAT 3 06-SEP-23 3GIX 1 REMARK HETSYN REVDAT 2 29-JUL-20 3GIX 1 COMPND REMARK SEQADV HET REVDAT 2 2 1 HETNAM FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 16-MAR-10 3GIX 0 JRNL AUTH T.C.JIN,F.GUO,Y.T.WANG,A.HOWARD,Y.Z.ZHANG JRNL TITL CRYSTAL STRUCTURE OF HUMAN SPLICING FACTOR DIM2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 54157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3130 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.941 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2483 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3395 ; 2.243 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.981 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.106 ;25.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;15.047 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;29.986 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1836 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1497 ; 2.599 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2479 ; 3.703 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 986 ; 4.784 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 891 ; 6.562 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2483 ; 2.975 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 406 ;14.032 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2410 ;11.131 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: REFINED INDIVIDUALLY. 3. THE REMARK 3 BIJVOET PAIRS WERE USED IN PHASING. REMARK 4 REMARK 4 3GIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000051917. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL REMARK 200 OPTICS : BENDING MAGNET REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 204363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 30.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 20.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21000 REMARK 200 FOR SHELL : 4.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 8000, 0.2 M MAGNESIUM ACETATE REMARK 280 TETRAHYDATE, 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.82000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASP A 143 REMARK 465 LEU A 144 REMARK 465 LEU A 145 REMARK 465 TYR A 146 REMARK 465 GLN A 147 REMARK 465 ASP A 148 REMARK 465 ILE A 149 REMARK 465 GLY B 1 REMARK 465 ASP B 143 REMARK 465 LEU B 144 REMARK 465 LEU B 145 REMARK 465 TYR B 146 REMARK 465 GLN B 147 REMARK 465 ASP B 148 REMARK 465 ILE B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 142 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 3 CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 142 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 24 CA CB CG CD CE NZ REMARK 480 ARG A 32 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 32 NH2 REMARK 480 LYS A 54 CA CB CG CD CE NZ REMARK 480 LYS A 127 CA CB CG CD CE NZ REMARK 480 LYS B 107 CA CB CG CD CE NZ REMARK 480 ARG B 121 CA CB CG CD NE CZ NH1 REMARK 480 ARG B 121 NH2 REMARK 480 ILE B 134 CA CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 23 CD GLU A 23 OE2 -0.072 REMARK 500 TYR A 77 CE2 TYR A 77 CD2 0.104 REMARK 500 GLN A 88 CD GLN A 88 NE2 0.211 REMARK 500 GLU A 117 CG GLU A 117 CD 0.091 REMARK 500 CYS B 38 CB CYS B 38 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 15 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 51 CB - CG - OD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 VAL A 68 CG1 - CB - CG2 ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 29 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 93 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 29 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XBS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN DIM2 DBREF 3GIX A 2 149 UNP Q9NX01 TXN4B_HUMAN 2 149 DBREF 3GIX B 2 149 UNP Q9NX01 TXN4B_HUMAN 2 149 SEQADV 3GIX GLY A 1 UNP Q9NX01 EXPRESSION TAG SEQADV 3GIX GLY B 1 UNP Q9NX01 EXPRESSION TAG SEQRES 1 A 149 GLY SER PHE LEU LEU PRO LYS LEU THR SER LYS LYS GLU SEQRES 2 A 149 VAL ASP GLN ALA ILE LYS SER THR ALA GLU LYS VAL LEU SEQRES 3 A 149 VAL LEU ARG PHE GLY ARG ASP GLU ASP PRO VAL CYS LEU SEQRES 4 A 149 GLN LEU ASP ASP ILE LEU SER LYS THR SER SER ASP LEU SEQRES 5 A 149 SER LYS MET ALA ALA ILE TYR LEU VAL ASP VAL ASP GLN SEQRES 6 A 149 THR ALA VAL TYR THR GLN TYR PHE ASP ILE SER TYR ILE SEQRES 7 A 149 PRO SER THR VAL PHE PHE PHE ASN GLY GLN HIS MET LYS SEQRES 8 A 149 VAL ASP TYR GLY SER PRO ASP HIS THR LYS PHE VAL GLY SEQRES 9 A 149 SER PHE LYS THR LYS GLN ASP PHE ILE ASP LEU ILE GLU SEQRES 10 A 149 VAL ILE TYR ARG GLY ALA MET ARG GLY LYS LEU ILE VAL SEQRES 11 A 149 GLN SER PRO ILE ASP PRO LYS ASN ILE PRO LYS TYR ASP SEQRES 12 A 149 LEU LEU TYR GLN ASP ILE SEQRES 1 B 149 GLY SER PHE LEU LEU PRO LYS LEU THR SER LYS LYS GLU SEQRES 2 B 149 VAL ASP GLN ALA ILE LYS SER THR ALA GLU LYS VAL LEU SEQRES 3 B 149 VAL LEU ARG PHE GLY ARG ASP GLU ASP PRO VAL CYS LEU SEQRES 4 B 149 GLN LEU ASP ASP ILE LEU SER LYS THR SER SER ASP LEU SEQRES 5 B 149 SER LYS MET ALA ALA ILE TYR LEU VAL ASP VAL ASP GLN SEQRES 6 B 149 THR ALA VAL TYR THR GLN TYR PHE ASP ILE SER TYR ILE SEQRES 7 B 149 PRO SER THR VAL PHE PHE PHE ASN GLY GLN HIS MET LYS SEQRES 8 B 149 VAL ASP TYR GLY SER PRO ASP HIS THR LYS PHE VAL GLY SEQRES 9 B 149 SER PHE LYS THR LYS GLN ASP PHE ILE ASP LEU ILE GLU SEQRES 10 B 149 VAL ILE TYR ARG GLY ALA MET ARG GLY LYS LEU ILE VAL SEQRES 11 B 149 GLN SER PRO ILE ASP PRO LYS ASN ILE PRO LYS TYR ASP SEQRES 12 B 149 LEU LEU TYR GLN ASP ILE HET GLC C 1 11 HET FRU C 2 12 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 GLC C6 H12 O6 FORMUL 3 FRU C6 H12 O6 FORMUL 4 HOH *406(H2 O) HELIX 1 1 SER A 10 THR A 21 1 12 HELIX 2 2 ASP A 35 SER A 50 1 16 HELIX 3 3 ALA A 67 PHE A 73 1 7 HELIX 4 4 THR A 108 ARG A 125 1 18 HELIX 5 5 ASP A 135 ILE A 139 5 5 HELIX 6 6 SER B 10 THR B 21 1 12 HELIX 7 7 ASP B 35 SER B 53 1 19 HELIX 8 8 THR B 66 PHE B 73 1 8 HELIX 9 9 THR B 108 ARG B 125 1 18 SHEET 1 A 5 LYS A 7 LEU A 8 0 SHEET 2 A 5 ALA A 56 ASP A 62 1 O LEU A 60 N LEU A 8 SHEET 3 A 5 VAL A 25 GLY A 31 1 N ARG A 29 O VAL A 61 SHEET 4 A 5 SER A 80 PHE A 85 -1 O SER A 80 N PHE A 30 SHEET 5 A 5 PHE A 102 VAL A 103 -1 O PHE A 102 N THR A 81 SHEET 1 B 6 LYS A 7 LEU A 8 0 SHEET 2 B 6 ALA A 56 ASP A 62 1 O LEU A 60 N LEU A 8 SHEET 3 B 6 VAL A 25 GLY A 31 1 N ARG A 29 O VAL A 61 SHEET 4 B 6 SER A 80 PHE A 85 -1 O SER A 80 N PHE A 30 SHEET 5 B 6 GLN A 88 ASP A 93 -1 O MET A 90 N PHE A 83 SHEET 6 B 6 ILE A 129 GLN A 131 1 O VAL A 130 N ASP A 93 SHEET 1 C 5 LYS B 7 LEU B 8 0 SHEET 2 C 5 ALA B 56 ASP B 62 1 O LEU B 60 N LEU B 8 SHEET 3 C 5 VAL B 25 GLY B 31 1 N ARG B 29 O VAL B 61 SHEET 4 C 5 SER B 80 PHE B 85 -1 O VAL B 82 N LEU B 28 SHEET 5 C 5 PHE B 102 VAL B 103 -1 O PHE B 102 N THR B 81 SHEET 1 D 6 LYS B 7 LEU B 8 0 SHEET 2 D 6 ALA B 56 ASP B 62 1 O LEU B 60 N LEU B 8 SHEET 3 D 6 VAL B 25 GLY B 31 1 N ARG B 29 O VAL B 61 SHEET 4 D 6 SER B 80 PHE B 85 -1 O VAL B 82 N LEU B 28 SHEET 5 D 6 GLN B 88 ASP B 93 -1 O MET B 90 N PHE B 83 SHEET 6 D 6 ILE B 129 GLN B 131 1 O VAL B 130 N ASP B 93 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.45 CISPEP 1 ILE A 78 PRO A 79 0 -6.91 CISPEP 2 SER B 2 PHE B 3 0 23.04 CISPEP 3 ILE B 78 PRO B 79 0 1.39 CRYST1 39.325 63.640 51.148 90.00 92.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025429 0.000000 0.001017 0.00000 SCALE2 0.000000 0.015713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019567 0.00000