data_3GK6 # _entry.id 3GK6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GK6 RCSB RCSB051962 WWPDB D_1000051962 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC7791 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GK6 _pdbx_database_status.recvd_initial_deposition_date 2009-03-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Deshpande, C.N.' 1 'Sureshan, V.' 2 'Harrop, S.J.' 3 'Boucher, Y.' 4 'Xu, X.' 5 'Cui, H.' 6 'Edwards, A.M.' 7 'Savchenko, A.' 8 'Joachimiak, A.' 9 'Chang, C.' 10 'Stokes, H.W.' 11 'Curmi, P.M.G.' 12 'Mabbutt, B.C.' 13 'Midwest Center for Structural Genomics (MCSG)' 14 # _citation.id primary _citation.title 'Crystal Structure of an Integron Gene Cassette-Associated Protein from Vibrio cholerae Identifies a Cationic Drug-Binding Module.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 6 _citation.page_first e16934 _citation.page_last e16934 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21390267 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0016934 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Deshpande, C.N.' 1 primary 'Harrop, S.J.' 2 primary 'Boucher, Y.' 3 primary 'Hassan, K.A.' 4 primary 'Leo, R.D.' 5 primary 'Xu, X.' 6 primary 'Cui, H.' 7 primary 'Savchenko, A.' 8 primary 'Chang, C.' 9 primary 'Labbate, M.' 10 primary 'Paulsen, I.T.' 11 primary 'Stokes, H.W.' 12 primary 'Curmi, P.M.' 13 primary 'Mabbutt, B.C.' 14 # _cell.entry_id 3GK6 _cell.length_a 59.378 _cell.length_b 59.378 _cell.length_c 95.756 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GK6 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Integron cassette protein VCH_CASS2' 19482.896 1 ? ? ? ? 2 non-polymer syn '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 354.436 1 ? ? ? ? 3 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGRENLYFQG(MSE)NISEINGFEVTGFVVRTTNADE(MSE)NP(MSE)TAKIGNLWEKFYLNAA PKLTDKSKVYGLYTNYESDFTGAFDVIACSDTLSPQLLSESVKTKVSSGKYVTFSATGE(MSE)PQVVIDLWNEVWNYFA SEHCPHKRAYTTDFEYYKSANTVEISIAVR ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGRENLYFQGMNISEINGFEVTGFVVRTTNADEMNPMTAKIGNLWEKFYLNAAPKLTDKSKVYGLYTNY ESDFTGAFDVIACSDTLSPQLLSESVKTKVSSGKYVTFSATGEMPQVVIDLWNEVWNYFASEHCPHKRAYTTDFEYYKSA NTVEISIAVR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC7791 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 ARG n 1 15 GLU n 1 16 ASN n 1 17 LEU n 1 18 TYR n 1 19 PHE n 1 20 GLN n 1 21 GLY n 1 22 MSE n 1 23 ASN n 1 24 ILE n 1 25 SER n 1 26 GLU n 1 27 ILE n 1 28 ASN n 1 29 GLY n 1 30 PHE n 1 31 GLU n 1 32 VAL n 1 33 THR n 1 34 GLY n 1 35 PHE n 1 36 VAL n 1 37 VAL n 1 38 ARG n 1 39 THR n 1 40 THR n 1 41 ASN n 1 42 ALA n 1 43 ASP n 1 44 GLU n 1 45 MSE n 1 46 ASN n 1 47 PRO n 1 48 MSE n 1 49 THR n 1 50 ALA n 1 51 LYS n 1 52 ILE n 1 53 GLY n 1 54 ASN n 1 55 LEU n 1 56 TRP n 1 57 GLU n 1 58 LYS n 1 59 PHE n 1 60 TYR n 1 61 LEU n 1 62 ASN n 1 63 ALA n 1 64 ALA n 1 65 PRO n 1 66 LYS n 1 67 LEU n 1 68 THR n 1 69 ASP n 1 70 LYS n 1 71 SER n 1 72 LYS n 1 73 VAL n 1 74 TYR n 1 75 GLY n 1 76 LEU n 1 77 TYR n 1 78 THR n 1 79 ASN n 1 80 TYR n 1 81 GLU n 1 82 SER n 1 83 ASP n 1 84 PHE n 1 85 THR n 1 86 GLY n 1 87 ALA n 1 88 PHE n 1 89 ASP n 1 90 VAL n 1 91 ILE n 1 92 ALA n 1 93 CYS n 1 94 SER n 1 95 ASP n 1 96 THR n 1 97 LEU n 1 98 SER n 1 99 PRO n 1 100 GLN n 1 101 LEU n 1 102 LEU n 1 103 SER n 1 104 GLU n 1 105 SER n 1 106 VAL n 1 107 LYS n 1 108 THR n 1 109 LYS n 1 110 VAL n 1 111 SER n 1 112 SER n 1 113 GLY n 1 114 LYS n 1 115 TYR n 1 116 VAL n 1 117 THR n 1 118 PHE n 1 119 SER n 1 120 ALA n 1 121 THR n 1 122 GLY n 1 123 GLU n 1 124 MSE n 1 125 PRO n 1 126 GLN n 1 127 VAL n 1 128 VAL n 1 129 ILE n 1 130 ASP n 1 131 LEU n 1 132 TRP n 1 133 ASN n 1 134 GLU n 1 135 VAL n 1 136 TRP n 1 137 ASN n 1 138 TYR n 1 139 PHE n 1 140 ALA n 1 141 SER n 1 142 GLU n 1 143 HIS n 1 144 CYS n 1 145 PRO n 1 146 HIS n 1 147 LYS n 1 148 ARG n 1 149 ALA n 1 150 TYR n 1 151 THR n 1 152 THR n 1 153 ASP n 1 154 PHE n 1 155 GLU n 1 156 TYR n 1 157 TYR n 1 158 LYS n 1 159 SER n 1 160 ALA n 1 161 ASN n 1 162 THR n 1 163 VAL n 1 164 GLU n 1 165 ILE n 1 166 SER n 1 167 ILE n 1 168 ALA n 1 169 VAL n 1 170 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene OPVCH_OP4G _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio cholerae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 666 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name p15TV-L _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GK6 _struct_ref.pdbx_db_accession 3GK6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNISEINGFEVTGFVVRTTNADEMNPMTAKIGNLWEKFYLNAAPKLTDKSKVYGLYTNYESDFTGAFDVIACSDTLSPQL LSESVKTKVSSGKYVTFSATGEMPQVVIDLWNEVWNYFASEHCPHKRAYTTDFEYYKSANTVEISIAVR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GK6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3GK6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 149 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GK6 MSE A 1 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -20 1 1 3GK6 GLY A 2 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -19 2 1 3GK6 SER A 3 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -18 3 1 3GK6 SER A 4 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -17 4 1 3GK6 HIS A 5 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -16 5 1 3GK6 HIS A 6 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -15 6 1 3GK6 HIS A 7 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -14 7 1 3GK6 HIS A 8 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -13 8 1 3GK6 HIS A 9 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -12 9 1 3GK6 HIS A 10 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -11 10 1 3GK6 SER A 11 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -10 11 1 3GK6 SER A 12 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -9 12 1 3GK6 GLY A 13 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -8 13 1 3GK6 ARG A 14 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -7 14 1 3GK6 GLU A 15 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -6 15 1 3GK6 ASN A 16 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -5 16 1 3GK6 LEU A 17 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -4 17 1 3GK6 TYR A 18 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -3 18 1 3GK6 PHE A 19 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -2 19 1 3GK6 GLN A 20 ? PDB 3GK6 ? ? 'EXPRESSION TAG' -1 20 1 3GK6 GLY A 21 ? PDB 3GK6 ? ? 'EXPRESSION TAG' 0 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PE4 non-polymer . '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 'POLYETHYLENE GLYCOL PEG4000' 'C16 H34 O8' 354.436 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GK6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pdbx_details '0.1M Citric acid, 25% PEG 3350, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-07-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97953 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97953 # _reflns.entry_id 3GK6 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 47.89 _reflns.d_resolution_high 1.80 _reflns.number_obs 34832 _reflns.number_all 34832 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value 0.079 _reflns.pdbx_netI_over_sigmaI 21.0 _reflns.B_iso_Wilson_estimate 27.219 _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.561 _reflns_shell.pdbx_Rsym_value 0.624 _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy 9.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2650 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GK6 _refine.ls_number_reflns_obs 34832 _refine.ls_number_reflns_all 34832 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.041 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs 99.56 _refine.ls_R_factor_obs 0.1852 _refine.ls_R_factor_all 0.1852 _refine.ls_R_factor_R_work 0.1832 _refine.ls_R_factor_R_free 0.2269 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 1782 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.408 _refine.solvent_model_param_bsol 69.411 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'The Friedel pairs were used in phasing' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1220 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1345 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 35.041 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? f_bond_d_na 1.047 ? ? ? 'X-RAY DIFFRACTION' ? f_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? f_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? f_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? f_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? f_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? f_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? f_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? f_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? f_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? f_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? f_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? f_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? f_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? f_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 13 1.8000 1.8490 2512 0.2704 100.00 0.3027 . . 173 . . . . 'X-RAY DIFFRACTION' 13 1.8490 1.9034 2520 0.2355 100.00 0.2491 . . 154 . . . . 'X-RAY DIFFRACTION' 13 1.9034 1.9648 2522 0.2088 100.00 0.2524 . . 162 . . . . 'X-RAY DIFFRACTION' 13 1.9648 2.0350 2522 0.1868 100.00 0.2400 . . 136 . . . . 'X-RAY DIFFRACTION' 13 2.0350 2.1165 2581 0.1833 100.00 0.2518 . . 149 . . . . 'X-RAY DIFFRACTION' 13 2.1165 2.2128 2573 0.1771 100.00 0.2077 . . 118 . . . . 'X-RAY DIFFRACTION' 13 2.2128 2.3294 2536 0.1738 100.00 0.2253 . . 136 . . . . 'X-RAY DIFFRACTION' 13 2.3294 2.4753 2557 0.1690 100.00 0.2517 . . 142 . . . . 'X-RAY DIFFRACTION' 13 2.4753 2.6664 2555 0.1823 100.00 0.2038 . . 135 . . . . 'X-RAY DIFFRACTION' 13 2.6664 2.9346 2576 0.1820 100.00 0.2223 . . 130 . . . . 'X-RAY DIFFRACTION' 13 2.9346 3.3590 2543 0.1881 100.00 0.2178 . . 118 . . . . 'X-RAY DIFFRACTION' 13 3.3590 4.2308 2592 0.1649 100.00 0.2389 . . 108 . . . . 'X-RAY DIFFRACTION' 13 4.2308 35.0478 2461 0.1773 95.00 0.1959 . . 121 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3GK6 _struct.title 'Crystal structure from the mobile metagenome of Vibrio cholerae. Integron cassette protein VCH_CASS2.' _struct.pdbx_descriptor 'Integron cassette protein VCH_CASS2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GK6 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Novel, Integron cassette protein, Vibrio cholerae, Oyster pond, Woods hole, USA, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 40 ? ASN A 46 ? THR A 19 ASN A 25 1 ? 7 HELX_P HELX_P2 2 LYS A 51 ? ALA A 63 ? LYS A 30 ALA A 42 1 ? 13 HELX_P HELX_P3 3 ALA A 64 ? LEU A 67 ? ALA A 43 LEU A 46 5 ? 4 HELX_P HELX_P4 4 PRO A 125 ? ALA A 140 ? PRO A 104 ALA A 119 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 21 C ? ? ? 1_555 A MSE 22 N A ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A GLY 21 C ? ? ? 1_555 A MSE 22 N B ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale ? ? A MSE 22 C A ? ? 1_555 A ASN 23 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 22 C B ? ? 1_555 A ASN 23 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.324 ? covale5 covale ? ? A GLU 44 C ? ? ? 1_555 A MSE 45 N A ? A GLU 23 A MSE 24 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A GLU 44 C ? ? ? 1_555 A MSE 45 N B ? A GLU 23 A MSE 24 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 45 C A ? ? 1_555 A ASN 46 N ? ? A MSE 24 A ASN 25 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? A MSE 45 C B ? ? 1_555 A ASN 46 N ? ? A MSE 24 A ASN 25 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A PRO 47 C ? ? ? 1_555 A MSE 48 N ? ? A PRO 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale ? ? A MSE 48 C ? ? ? 1_555 A THR 49 N ? ? A MSE 27 A THR 28 1_555 ? ? ? ? ? ? ? 1.328 ? covale11 covale ? ? A GLU 123 C ? ? ? 1_555 A MSE 124 N ? ? A GLU 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 124 C ? ? ? 1_555 A PRO 125 N ? ? A MSE 103 A PRO 104 1_555 ? ? ? ? ? ? ? 1.346 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MSE _struct_mon_prot_cis.label_seq_id 124 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MSE _struct_mon_prot_cis.auth_seq_id 103 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 125 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 104 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.09 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 18 ? ILE A 27 ? TYR A -3 ILE A 6 A 2 GLY A 113 ? THR A 121 ? GLY A 92 THR A 100 A 3 THR A 162 ? ALA A 168 ? THR A 141 ALA A 147 A 4 THR A 152 ? TYR A 156 ? THR A 131 TYR A 135 A 5 VAL A 73 ? THR A 78 ? VAL A 52 THR A 57 A 6 PHE A 88 ? SER A 94 ? PHE A 67 SER A 73 A 7 PHE A 30 ? THR A 39 ? PHE A 9 THR A 18 A 8 VAL A 106 ? VAL A 110 ? VAL A 85 VAL A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 25 ? N SER A 4 O TYR A 115 ? O TYR A 94 A 2 3 N PHE A 118 ? N PHE A 97 O ILE A 165 ? O ILE A 144 A 3 4 O GLU A 164 ? O GLU A 143 N TYR A 156 ? N TYR A 135 A 4 5 O ASP A 153 ? O ASP A 132 N TYR A 77 ? N TYR A 56 A 5 6 N THR A 78 ? N THR A 57 O ASP A 89 ? O ASP A 68 A 6 7 O VAL A 90 ? O VAL A 69 N VAL A 37 ? N VAL A 16 A 7 8 N VAL A 32 ? N VAL A 11 O THR A 108 ? O THR A 87 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE PE4 A 6061' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLU A 26 ? GLU A 5 . ? 6_655 ? 2 AC1 7 TRP A 56 ? TRP A 35 . ? 1_555 ? 3 AC1 7 TYR A 60 ? TYR A 39 . ? 1_555 ? 4 AC1 7 VAL A 128 ? VAL A 107 . ? 1_555 ? 5 AC1 7 HOH C . ? HOH A 208 . ? 1_555 ? 6 AC1 7 HOH C . ? HOH A 215 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 251 . ? 6_655 ? # _database_PDB_matrix.entry_id 3GK6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GK6 _atom_sites.fract_transf_matrix[1][1] 0.016841 _atom_sites.fract_transf_matrix[1][2] 0.009723 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019446 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010443 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -20 ? ? ? A . n A 1 2 GLY 2 -19 ? ? ? A . n A 1 3 SER 3 -18 ? ? ? A . n A 1 4 SER 4 -17 ? ? ? A . n A 1 5 HIS 5 -16 ? ? ? A . n A 1 6 HIS 6 -15 ? ? ? A . n A 1 7 HIS 7 -14 ? ? ? A . n A 1 8 HIS 8 -13 ? ? ? A . n A 1 9 HIS 9 -12 ? ? ? A . n A 1 10 HIS 10 -11 ? ? ? A . n A 1 11 SER 11 -10 ? ? ? A . n A 1 12 SER 12 -9 ? ? ? A . n A 1 13 GLY 13 -8 ? ? ? A . n A 1 14 ARG 14 -7 ? ? ? A . n A 1 15 GLU 15 -6 -6 GLU GLU A . n A 1 16 ASN 16 -5 -5 ASN ASN A . n A 1 17 LEU 17 -4 -4 LEU LEU A . n A 1 18 TYR 18 -3 -3 TYR TYR A . n A 1 19 PHE 19 -2 -2 PHE PHE A . n A 1 20 GLN 20 -1 -1 GLN GLN A . n A 1 21 GLY 21 0 0 GLY GLY A . n A 1 22 MSE 22 1 1 MSE MSE A . n A 1 23 ASN 23 2 2 ASN ASN A . n A 1 24 ILE 24 3 3 ILE ILE A . n A 1 25 SER 25 4 4 SER SER A . n A 1 26 GLU 26 5 5 GLU GLU A . n A 1 27 ILE 27 6 6 ILE ILE A . n A 1 28 ASN 28 7 7 ASN ASN A . n A 1 29 GLY 29 8 8 GLY GLY A . n A 1 30 PHE 30 9 9 PHE PHE A . n A 1 31 GLU 31 10 10 GLU GLU A . n A 1 32 VAL 32 11 11 VAL VAL A . n A 1 33 THR 33 12 12 THR THR A . n A 1 34 GLY 34 13 13 GLY GLY A . n A 1 35 PHE 35 14 14 PHE PHE A . n A 1 36 VAL 36 15 15 VAL VAL A . n A 1 37 VAL 37 16 16 VAL VAL A . n A 1 38 ARG 38 17 17 ARG ARG A . n A 1 39 THR 39 18 18 THR THR A . n A 1 40 THR 40 19 19 THR THR A . n A 1 41 ASN 41 20 20 ASN ASN A . n A 1 42 ALA 42 21 21 ALA ALA A . n A 1 43 ASP 43 22 22 ASP ASP A . n A 1 44 GLU 44 23 23 GLU GLU A . n A 1 45 MSE 45 24 24 MSE MSE A . n A 1 46 ASN 46 25 25 ASN ASN A . n A 1 47 PRO 47 26 26 PRO PRO A . n A 1 48 MSE 48 27 27 MSE MSE A . n A 1 49 THR 49 28 28 THR THR A . n A 1 50 ALA 50 29 29 ALA ALA A . n A 1 51 LYS 51 30 30 LYS LYS A . n A 1 52 ILE 52 31 31 ILE ILE A . n A 1 53 GLY 53 32 32 GLY GLY A . n A 1 54 ASN 54 33 33 ASN ASN A . n A 1 55 LEU 55 34 34 LEU LEU A . n A 1 56 TRP 56 35 35 TRP TRP A . n A 1 57 GLU 57 36 36 GLU GLU A . n A 1 58 LYS 58 37 37 LYS LYS A . n A 1 59 PHE 59 38 38 PHE PHE A . n A 1 60 TYR 60 39 39 TYR TYR A . n A 1 61 LEU 61 40 40 LEU LEU A . n A 1 62 ASN 62 41 41 ASN ASN A . n A 1 63 ALA 63 42 42 ALA ALA A . n A 1 64 ALA 64 43 43 ALA ALA A . n A 1 65 PRO 65 44 44 PRO PRO A . n A 1 66 LYS 66 45 45 LYS LYS A . n A 1 67 LEU 67 46 46 LEU LEU A . n A 1 68 THR 68 47 47 THR THR A . n A 1 69 ASP 69 48 48 ASP ASP A . n A 1 70 LYS 70 49 49 LYS LYS A . n A 1 71 SER 71 50 50 SER SER A . n A 1 72 LYS 72 51 51 LYS LYS A . n A 1 73 VAL 73 52 52 VAL VAL A . n A 1 74 TYR 74 53 53 TYR TYR A . n A 1 75 GLY 75 54 54 GLY GLY A . n A 1 76 LEU 76 55 55 LEU LEU A . n A 1 77 TYR 77 56 56 TYR TYR A . n A 1 78 THR 78 57 57 THR THR A . n A 1 79 ASN 79 58 58 ASN ASN A . n A 1 80 TYR 80 59 59 TYR TYR A . n A 1 81 GLU 81 60 60 GLU GLU A . n A 1 82 SER 82 61 61 SER SER A . n A 1 83 ASP 83 62 62 ASP ASP A . n A 1 84 PHE 84 63 63 PHE PHE A . n A 1 85 THR 85 64 64 THR THR A . n A 1 86 GLY 86 65 65 GLY GLY A . n A 1 87 ALA 87 66 66 ALA ALA A . n A 1 88 PHE 88 67 67 PHE PHE A . n A 1 89 ASP 89 68 68 ASP ASP A . n A 1 90 VAL 90 69 69 VAL VAL A . n A 1 91 ILE 91 70 70 ILE ILE A . n A 1 92 ALA 92 71 71 ALA ALA A . n A 1 93 CYS 93 72 72 CYS CYS A . n A 1 94 SER 94 73 73 SER SER A . n A 1 95 ASP 95 74 74 ASP ASP A . n A 1 96 THR 96 75 75 THR THR A . n A 1 97 LEU 97 76 76 LEU LEU A . n A 1 98 SER 98 77 77 SER SER A . n A 1 99 PRO 99 78 78 PRO PRO A . n A 1 100 GLN 100 79 79 GLN GLN A . n A 1 101 LEU 101 80 80 LEU LEU A . n A 1 102 LEU 102 81 81 LEU LEU A . n A 1 103 SER 103 82 82 SER SER A . n A 1 104 GLU 104 83 83 GLU GLU A . n A 1 105 SER 105 84 84 SER SER A . n A 1 106 VAL 106 85 85 VAL VAL A . n A 1 107 LYS 107 86 86 LYS LYS A . n A 1 108 THR 108 87 87 THR THR A . n A 1 109 LYS 109 88 88 LYS LYS A . n A 1 110 VAL 110 89 89 VAL VAL A . n A 1 111 SER 111 90 90 SER SER A . n A 1 112 SER 112 91 91 SER SER A . n A 1 113 GLY 113 92 92 GLY GLY A . n A 1 114 LYS 114 93 93 LYS LYS A . n A 1 115 TYR 115 94 94 TYR TYR A . n A 1 116 VAL 116 95 95 VAL VAL A . n A 1 117 THR 117 96 96 THR THR A . n A 1 118 PHE 118 97 97 PHE PHE A . n A 1 119 SER 119 98 98 SER SER A . n A 1 120 ALA 120 99 99 ALA ALA A . n A 1 121 THR 121 100 100 THR THR A . n A 1 122 GLY 122 101 101 GLY GLY A . n A 1 123 GLU 123 102 102 GLU GLU A . n A 1 124 MSE 124 103 103 MSE MSE A . n A 1 125 PRO 125 104 104 PRO PRO A . n A 1 126 GLN 126 105 105 GLN GLN A . n A 1 127 VAL 127 106 106 VAL VAL A . n A 1 128 VAL 128 107 107 VAL VAL A . n A 1 129 ILE 129 108 108 ILE ILE A . n A 1 130 ASP 130 109 109 ASP ASP A . n A 1 131 LEU 131 110 110 LEU LEU A . n A 1 132 TRP 132 111 111 TRP TRP A . n A 1 133 ASN 133 112 112 ASN ASN A . n A 1 134 GLU 134 113 113 GLU GLU A . n A 1 135 VAL 135 114 114 VAL VAL A . n A 1 136 TRP 136 115 115 TRP TRP A . n A 1 137 ASN 137 116 116 ASN ASN A . n A 1 138 TYR 138 117 117 TYR TYR A . n A 1 139 PHE 139 118 118 PHE PHE A . n A 1 140 ALA 140 119 119 ALA ALA A . n A 1 141 SER 141 120 ? ? ? A . n A 1 142 GLU 142 121 ? ? ? A . n A 1 143 HIS 143 122 ? ? ? A . n A 1 144 CYS 144 123 123 CYS CYS A . n A 1 145 PRO 145 124 124 PRO PRO A . n A 1 146 HIS 146 125 125 HIS HIS A . n A 1 147 LYS 147 126 126 LYS LYS A . n A 1 148 ARG 148 127 127 ARG ARG A . n A 1 149 ALA 149 128 128 ALA ALA A . n A 1 150 TYR 150 129 129 TYR TYR A . n A 1 151 THR 151 130 130 THR THR A . n A 1 152 THR 152 131 131 THR THR A . n A 1 153 ASP 153 132 132 ASP ASP A . n A 1 154 PHE 154 133 133 PHE PHE A . n A 1 155 GLU 155 134 134 GLU GLU A . n A 1 156 TYR 156 135 135 TYR TYR A . n A 1 157 TYR 157 136 136 TYR TYR A . n A 1 158 LYS 158 137 137 LYS LYS A . n A 1 159 SER 159 138 138 SER SER A . n A 1 160 ALA 160 139 139 ALA ALA A . n A 1 161 ASN 161 140 140 ASN ASN A . n A 1 162 THR 162 141 141 THR THR A . n A 1 163 VAL 163 142 142 VAL VAL A . n A 1 164 GLU 164 143 143 GLU GLU A . n A 1 165 ILE 165 144 144 ILE ILE A . n A 1 166 SER 166 145 145 SER SER A . n A 1 167 ILE 167 146 146 ILE ILE A . n A 1 168 ALA 168 147 147 ALA ALA A . n A 1 169 VAL 169 148 148 VAL VAL A . n A 1 170 ARG 170 149 149 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 22 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 24 ? MET SELENOMETHIONINE 3 A MSE 48 A MSE 27 ? MET SELENOMETHIONINE 4 A MSE 124 A MSE 103 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 15.3857 _pdbx_refine_tls.origin_y 29.8260 _pdbx_refine_tls.origin_z 29.2665 _pdbx_refine_tls.T[1][1] 0.2452 _pdbx_refine_tls.T[2][2] 0.1324 _pdbx_refine_tls.T[3][3] 0.1737 _pdbx_refine_tls.T[1][2] 0.0640 _pdbx_refine_tls.T[1][3] 0.0099 _pdbx_refine_tls.T[2][3] 0.0251 _pdbx_refine_tls.L[1][1] 2.6536 _pdbx_refine_tls.L[2][2] 4.1546 _pdbx_refine_tls.L[3][3] 1.7721 _pdbx_refine_tls.L[1][2] -1.7463 _pdbx_refine_tls.L[1][3] -0.1047 _pdbx_refine_tls.L[2][3] -0.5796 _pdbx_refine_tls.S[1][1] 0.1834 _pdbx_refine_tls.S[1][2] 0.0641 _pdbx_refine_tls.S[1][3] 0.1454 _pdbx_refine_tls.S[2][1] -0.4936 _pdbx_refine_tls.S[2][2] -0.1026 _pdbx_refine_tls.S[2][3] -0.1499 _pdbx_refine_tls.S[3][1] 0.0036 _pdbx_refine_tls.S[3][2] 0.0150 _pdbx_refine_tls.S[3][3] -0.0743 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A' _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AutoSol phasing . ? 2 PHENIX refinement . ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 61 ? ? -151.47 -99.27 2 1 ASP A 62 ? ? -123.72 -150.95 3 1 PRO A 78 ? ? -62.76 8.54 4 1 GLN A 79 ? ? -140.41 12.28 5 1 THR A 130 ? ? -105.12 -86.78 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A PE4 6061 ? O1 ? B PE4 1 O1 2 1 N 1 A PE4 6061 ? C1 ? B PE4 1 C1 3 1 N 1 A PE4 6061 ? C2 ? B PE4 1 C2 4 1 N 1 A PE4 6061 ? O2 ? B PE4 1 O2 5 1 N 1 A PE4 6061 ? C3 ? B PE4 1 C3 6 1 N 1 A PE4 6061 ? C15 ? B PE4 1 C15 7 1 N 1 A PE4 6061 ? C16 ? B PE4 1 C16 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -20 ? A MSE 1 2 1 Y 1 A GLY -19 ? A GLY 2 3 1 Y 1 A SER -18 ? A SER 3 4 1 Y 1 A SER -17 ? A SER 4 5 1 Y 1 A HIS -16 ? A HIS 5 6 1 Y 1 A HIS -15 ? A HIS 6 7 1 Y 1 A HIS -14 ? A HIS 7 8 1 Y 1 A HIS -13 ? A HIS 8 9 1 Y 1 A HIS -12 ? A HIS 9 10 1 Y 1 A HIS -11 ? A HIS 10 11 1 Y 1 A SER -10 ? A SER 11 12 1 Y 1 A SER -9 ? A SER 12 13 1 Y 1 A GLY -8 ? A GLY 13 14 1 Y 1 A ARG -7 ? A ARG 14 15 1 Y 1 A SER 120 ? A SER 141 16 1 Y 1 A GLU 121 ? A GLU 142 17 1 Y 1 A HIS 122 ? A HIS 143 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' PE4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE4 1 6061 6061 PE4 PE4 A . C 3 HOH 1 150 1 HOH HOH A . C 3 HOH 2 151 151 HOH HOH A . C 3 HOH 3 152 2 HOH HOH A . C 3 HOH 4 153 153 HOH HOH A . C 3 HOH 5 154 154 HOH HOH A . C 3 HOH 6 155 155 HOH HOH A . C 3 HOH 7 156 156 HOH HOH A . C 3 HOH 8 157 157 HOH HOH A . C 3 HOH 9 158 158 HOH HOH A . C 3 HOH 10 159 3 HOH HOH A . C 3 HOH 11 160 4 HOH HOH A . C 3 HOH 12 161 5 HOH HOH A . C 3 HOH 13 162 6 HOH HOH A . C 3 HOH 14 163 7 HOH HOH A . C 3 HOH 15 164 8 HOH HOH A . C 3 HOH 16 165 9 HOH HOH A . C 3 HOH 17 166 10 HOH HOH A . C 3 HOH 18 167 11 HOH HOH A . C 3 HOH 19 168 12 HOH HOH A . C 3 HOH 20 169 13 HOH HOH A . C 3 HOH 21 170 14 HOH HOH A . C 3 HOH 22 171 15 HOH HOH A . C 3 HOH 23 172 16 HOH HOH A . C 3 HOH 24 173 17 HOH HOH A . C 3 HOH 25 174 18 HOH HOH A . C 3 HOH 26 175 19 HOH HOH A . C 3 HOH 27 176 20 HOH HOH A . C 3 HOH 28 177 21 HOH HOH A . C 3 HOH 29 178 22 HOH HOH A . C 3 HOH 30 179 23 HOH HOH A . C 3 HOH 31 180 24 HOH HOH A . C 3 HOH 32 181 25 HOH HOH A . C 3 HOH 33 182 26 HOH HOH A . C 3 HOH 34 183 27 HOH HOH A . C 3 HOH 35 184 28 HOH HOH A . C 3 HOH 36 185 29 HOH HOH A . C 3 HOH 37 186 30 HOH HOH A . C 3 HOH 38 187 31 HOH HOH A . C 3 HOH 39 188 32 HOH HOH A . C 3 HOH 40 189 33 HOH HOH A . C 3 HOH 41 190 34 HOH HOH A . C 3 HOH 42 191 35 HOH HOH A . C 3 HOH 43 192 36 HOH HOH A . C 3 HOH 44 193 37 HOH HOH A . C 3 HOH 45 194 38 HOH HOH A . C 3 HOH 46 195 39 HOH HOH A . C 3 HOH 47 196 40 HOH HOH A . C 3 HOH 48 197 41 HOH HOH A . C 3 HOH 49 198 42 HOH HOH A . C 3 HOH 50 199 43 HOH HOH A . C 3 HOH 51 200 44 HOH HOH A . C 3 HOH 52 201 45 HOH HOH A . C 3 HOH 53 202 46 HOH HOH A . C 3 HOH 54 203 47 HOH HOH A . C 3 HOH 55 204 48 HOH HOH A . C 3 HOH 56 205 49 HOH HOH A . C 3 HOH 57 206 53 HOH HOH A . C 3 HOH 58 207 55 HOH HOH A . C 3 HOH 59 208 56 HOH HOH A . C 3 HOH 60 209 58 HOH HOH A . C 3 HOH 61 210 59 HOH HOH A . C 3 HOH 62 211 60 HOH HOH A . C 3 HOH 63 212 61 HOH HOH A . C 3 HOH 64 213 62 HOH HOH A . C 3 HOH 65 214 63 HOH HOH A . C 3 HOH 66 215 64 HOH HOH A . C 3 HOH 67 216 66 HOH HOH A . C 3 HOH 68 217 69 HOH HOH A . C 3 HOH 69 218 70 HOH HOH A . C 3 HOH 70 219 71 HOH HOH A . C 3 HOH 71 220 72 HOH HOH A . C 3 HOH 72 221 73 HOH HOH A . C 3 HOH 73 222 74 HOH HOH A . C 3 HOH 74 223 75 HOH HOH A . C 3 HOH 75 224 76 HOH HOH A . C 3 HOH 76 225 77 HOH HOH A . C 3 HOH 77 226 83 HOH HOH A . C 3 HOH 78 227 84 HOH HOH A . C 3 HOH 79 228 86 HOH HOH A . C 3 HOH 80 229 87 HOH HOH A . C 3 HOH 81 230 88 HOH HOH A . C 3 HOH 82 231 89 HOH HOH A . C 3 HOH 83 232 90 HOH HOH A . C 3 HOH 84 233 91 HOH HOH A . C 3 HOH 85 234 92 HOH HOH A . C 3 HOH 86 235 93 HOH HOH A . C 3 HOH 87 236 94 HOH HOH A . C 3 HOH 88 237 95 HOH HOH A . C 3 HOH 89 238 96 HOH HOH A . C 3 HOH 90 239 99 HOH HOH A . C 3 HOH 91 240 100 HOH HOH A . C 3 HOH 92 241 101 HOH HOH A . C 3 HOH 93 242 103 HOH HOH A . C 3 HOH 94 243 105 HOH HOH A . C 3 HOH 95 244 109 HOH HOH A . C 3 HOH 96 245 110 HOH HOH A . C 3 HOH 97 246 113 HOH HOH A . C 3 HOH 98 247 118 HOH HOH A . C 3 HOH 99 248 119 HOH HOH A . C 3 HOH 100 249 120 HOH HOH A . C 3 HOH 101 250 124 HOH HOH A . C 3 HOH 102 251 125 HOH HOH A . C 3 HOH 103 252 129 HOH HOH A . C 3 HOH 104 253 133 HOH HOH A . C 3 HOH 105 254 136 HOH HOH A . C 3 HOH 106 255 143 HOH HOH A . C 3 HOH 107 256 144 HOH HOH A . C 3 HOH 108 257 146 HOH HOH A . #