data_3GLR # _entry.id 3GLR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GLR RCSB RCSB052019 WWPDB D_1000052019 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GLS 'Crystal Structure of Human SIRT3' unspecified PDB 3GLT 'Crystal Structure of Human SIRT3 with ADPR bound to the AceCS2 peptide containing a thioacetyl lysine' unspecified PDB 3GLU 'Crystal Structure of Human SIRT3 with AceCS2 peptide' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GLR _pdbx_database_status.recvd_initial_deposition_date 2009-03-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jin, L.' 1 'Wei, W.' 2 'Jiang, Y.' 3 'Peng, H.' 4 'Cai, J.' 5 'Mao, C.' 6 'Dai, H.' 7 'Bemis, J.E.' 8 'Jirousek, M.R.' 9 'Milne, J.C.' 10 'Westphal, C.H.' 11 'Perni, R.B.' 12 # _citation.id primary _citation.title 'Crystal Structures of Human SIRT3 Displaying Substrate-induced Conformational Changes.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 24394 _citation.page_last 24405 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19535340 _citation.pdbx_database_id_DOI 10.1074/jbc.M109.014928 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jin, L.' 1 ? primary 'Wei, W.' 2 ? primary 'Jiang, Y.' 3 ? primary 'Peng, H.' 4 ? primary 'Cai, J.' 5 ? primary 'Mao, C.' 6 ? primary 'Dai, H.' 7 ? primary 'Choy, W.' 8 ? primary 'Bemis, J.E.' 9 ? primary 'Jirousek, M.R.' 10 ? primary 'Milne, J.C.' 11 ? primary 'Westphal, C.H.' 12 ? primary 'Perni, R.B.' 13 ? # _cell.entry_id 3GLR _cell.length_a 78.190 _cell.length_b 129.063 _cell.length_c 77.899 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GLR _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NAD-dependent deacetylase sirtuin-3, mitochondrial' 31612.348 1 3.5.1.- ? 'Human SIRT3, residues 118-399' ? 2 polymer syn 'Acetyl-coenzyme A synthetase 2-like, mitochondrial' 1518.875 1 6.2.1.1 ? 'AceCS2 peptide, residues 638-649' ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 non-polymer syn 'BICARBONATE ION' 61.017 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 water nat water 18.015 222 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'SIR2-like protein 3, hSIRT3' 2 'Acetate--CoA ligase 2, Acetyl-CoA synthetase 2, Acyl-CoA synthetase short-chain family member 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK ; ;SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK ; A ? 2 'polypeptide(L)' no yes 'TRSG(ALY)VMRRLLR' TRSGKVMRRLLR B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 SER n 1 5 ASP n 1 6 LYS n 1 7 GLY n 1 8 LYS n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 GLN n 1 13 ASP n 1 14 VAL n 1 15 ALA n 1 16 GLU n 1 17 LEU n 1 18 ILE n 1 19 ARG n 1 20 ALA n 1 21 ARG n 1 22 ALA n 1 23 CYS n 1 24 GLN n 1 25 ARG n 1 26 VAL n 1 27 VAL n 1 28 VAL n 1 29 MET n 1 30 VAL n 1 31 GLY n 1 32 ALA n 1 33 GLY n 1 34 ILE n 1 35 SER n 1 36 THR n 1 37 PRO n 1 38 SER n 1 39 GLY n 1 40 ILE n 1 41 PRO n 1 42 ASP n 1 43 PHE n 1 44 ARG n 1 45 SER n 1 46 PRO n 1 47 GLY n 1 48 SER n 1 49 GLY n 1 50 LEU n 1 51 TYR n 1 52 SER n 1 53 ASN n 1 54 LEU n 1 55 GLN n 1 56 GLN n 1 57 TYR n 1 58 ASP n 1 59 LEU n 1 60 PRO n 1 61 TYR n 1 62 PRO n 1 63 GLU n 1 64 ALA n 1 65 ILE n 1 66 PHE n 1 67 GLU n 1 68 LEU n 1 69 PRO n 1 70 PHE n 1 71 PHE n 1 72 PHE n 1 73 HIS n 1 74 ASN n 1 75 PRO n 1 76 LYS n 1 77 PRO n 1 78 PHE n 1 79 PHE n 1 80 THR n 1 81 LEU n 1 82 ALA n 1 83 LYS n 1 84 GLU n 1 85 LEU n 1 86 TYR n 1 87 PRO n 1 88 GLY n 1 89 ASN n 1 90 TYR n 1 91 LYS n 1 92 PRO n 1 93 ASN n 1 94 VAL n 1 95 THR n 1 96 HIS n 1 97 TYR n 1 98 PHE n 1 99 LEU n 1 100 ARG n 1 101 LEU n 1 102 LEU n 1 103 HIS n 1 104 ASP n 1 105 LYS n 1 106 GLY n 1 107 LEU n 1 108 LEU n 1 109 LEU n 1 110 ARG n 1 111 LEU n 1 112 TYR n 1 113 THR n 1 114 GLN n 1 115 ASN n 1 116 ILE n 1 117 ASP n 1 118 GLY n 1 119 LEU n 1 120 GLU n 1 121 ARG n 1 122 VAL n 1 123 SER n 1 124 GLY n 1 125 ILE n 1 126 PRO n 1 127 ALA n 1 128 SER n 1 129 LYS n 1 130 LEU n 1 131 VAL n 1 132 GLU n 1 133 ALA n 1 134 HIS n 1 135 GLY n 1 136 THR n 1 137 PHE n 1 138 ALA n 1 139 SER n 1 140 ALA n 1 141 THR n 1 142 CYS n 1 143 THR n 1 144 VAL n 1 145 CYS n 1 146 GLN n 1 147 ARG n 1 148 PRO n 1 149 PHE n 1 150 PRO n 1 151 GLY n 1 152 GLU n 1 153 ASP n 1 154 ILE n 1 155 ARG n 1 156 ALA n 1 157 ASP n 1 158 VAL n 1 159 MET n 1 160 ALA n 1 161 ASP n 1 162 ARG n 1 163 VAL n 1 164 PRO n 1 165 ARG n 1 166 CYS n 1 167 PRO n 1 168 VAL n 1 169 CYS n 1 170 THR n 1 171 GLY n 1 172 VAL n 1 173 VAL n 1 174 LYS n 1 175 PRO n 1 176 ASP n 1 177 ILE n 1 178 VAL n 1 179 PHE n 1 180 PHE n 1 181 GLY n 1 182 GLU n 1 183 PRO n 1 184 LEU n 1 185 PRO n 1 186 GLN n 1 187 ARG n 1 188 PHE n 1 189 LEU n 1 190 LEU n 1 191 HIS n 1 192 VAL n 1 193 VAL n 1 194 ASP n 1 195 PHE n 1 196 PRO n 1 197 MET n 1 198 ALA n 1 199 ASP n 1 200 LEU n 1 201 LEU n 1 202 LEU n 1 203 ILE n 1 204 LEU n 1 205 GLY n 1 206 THR n 1 207 SER n 1 208 LEU n 1 209 GLU n 1 210 VAL n 1 211 GLU n 1 212 PRO n 1 213 PHE n 1 214 ALA n 1 215 SER n 1 216 LEU n 1 217 THR n 1 218 GLU n 1 219 ALA n 1 220 VAL n 1 221 ARG n 1 222 SER n 1 223 SER n 1 224 VAL n 1 225 PRO n 1 226 ARG n 1 227 LEU n 1 228 LEU n 1 229 ILE n 1 230 ASN n 1 231 ARG n 1 232 ASP n 1 233 LEU n 1 234 VAL n 1 235 GLY n 1 236 PRO n 1 237 LEU n 1 238 ALA n 1 239 TRP n 1 240 HIS n 1 241 PRO n 1 242 ARG n 1 243 SER n 1 244 ARG n 1 245 ASP n 1 246 VAL n 1 247 ALA n 1 248 GLN n 1 249 LEU n 1 250 GLY n 1 251 ASP n 1 252 VAL n 1 253 VAL n 1 254 HIS n 1 255 GLY n 1 256 VAL n 1 257 GLU n 1 258 SER n 1 259 LEU n 1 260 VAL n 1 261 GLU n 1 262 LEU n 1 263 LEU n 1 264 GLY n 1 265 TRP n 1 266 THR n 1 267 GLU n 1 268 GLU n 1 269 MET n 1 270 ARG n 1 271 ASP n 1 272 LEU n 1 273 VAL n 1 274 GLN n 1 275 ARG n 1 276 GLU n 1 277 THR n 1 278 GLY n 1 279 LYS n 1 280 LEU n 1 281 ASP n 1 282 GLY n 1 283 PRO n 1 284 ASP n 1 285 LYS n 2 1 THR n 2 2 ARG n 2 3 SER n 2 4 GLY n 2 5 ALY n 2 6 VAL n 2 7 MET n 2 8 ARG n 2 9 ARG n 2 10 LEU n 2 11 LEU n 2 12 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SIRT3, SIR2L3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-Gold(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pET21b' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SIRT3_HUMAN Q9NTG7 1 ;SDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRV PRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRS RDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK ; 118 ? 2 UNP ACS2L_HUMAN Q9NUB1 2 TRSGKVMRRLLR 638 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GLR A 4 ? 285 ? Q9NTG7 118 ? 399 ? 118 399 2 2 3GLR B 1 ? 12 ? Q9NUB1 638 ? 649 ? 638 649 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GLR SER A 1 ? UNP Q9NTG7 ? ? 'EXPRESSION TAG' 115 1 1 3GLR ASN A 2 ? UNP Q9NTG7 ? ? 'EXPRESSION TAG' 116 2 1 3GLR ALA A 3 ? UNP Q9NTG7 ? ? 'EXPRESSION TAG' 117 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALY 'L-peptide linking' n 'N(6)-ACETYLLYSINE' ? 'C8 H16 N2 O3' 188.224 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BCT non-polymer . 'BICARBONATE ION' ? 'C H O3 -1' 61.017 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3GLR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_percent_sol 58.53 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M lithium sulfate monohydrate, 15% (w/v) PEG 12000 and 0.1 M Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-10-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CRYOGENICALLY-COOLED SINGLE CRYSTAL SI(111) SIDE BOUNCE MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength 0.97918 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3GLR _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 65.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 36839 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.06200 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.7000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.600 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.41200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.100 _reflns_shell.pdbx_redundancy 4.40 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3GLR _refine.ls_number_reflns_obs 34981 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 65.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.226 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1838 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.B_iso_mean 29.43 _refine.aniso_B[1][1] -0.17000 _refine.aniso_B[2][2] -0.68000 _refine.aniso_B[3][3] 0.85000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.110 _refine.overall_SU_ML 0.078 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.526 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2207 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 222 _refine_hist.number_atoms_total 2450 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 65.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 2308 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.443 1.998 ? 3133 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.334 5.000 ? 279 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.441 22.727 ? 99 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.966 15.000 ? 388 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.727 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.100 0.200 ? 353 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.022 ? 1734 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.964 1.500 ? 1408 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.716 2.000 ? 2296 'X-RAY DIFFRACTION' ? r_scbond_it 2.437 3.000 ? 900 'X-RAY DIFFRACTION' ? r_scangle_it 3.976 4.500 ? 837 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.85 _refine_ls_shell.number_reflns_R_work 2550 _refine_ls_shell.R_factor_R_work 0.3680 _refine_ls_shell.percent_reflns_obs 99.59 _refine_ls_shell.R_factor_R_free 0.3570 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3GLR _struct.title 'Crystal Structure of human SIRT3 with acetyl-lysine AceCS2 peptide' _struct.pdbx_descriptor 'NAD-dependent deacetylase sirtuin-3, mitochondrial (E.C.3.5.1.-), Acetyl-coenzyme A synthetase 2-like, mitochondrial (E.C.6.2.1.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GLR _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE REGULATOR' _struct_keywords.text ;NAD dependent deacetylase, sirtuin, substrate peptide complex, Hydrolase, Metal-binding, Mitochondrion, NAD, Transit peptide, Ligase, HYDROLASE-HYDROLASE REGULATOR COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 4 ? H N N 7 ? I N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? ALA A 20 ? SER A 124 ALA A 134 1 ? 11 HELX_P HELX_P2 2 ALA A 32 ? GLY A 39 ? ALA A 146 GLY A 153 5 ? 8 HELX_P HELX_P3 3 SER A 48 ? GLN A 56 ? SER A 162 GLN A 170 1 ? 9 HELX_P HELX_P4 4 TYR A 61 ? PHE A 66 ? TYR A 175 PHE A 180 5 ? 6 HELX_P HELX_P5 5 GLU A 67 ? ASN A 74 ? GLU A 181 ASN A 188 1 ? 8 HELX_P HELX_P6 6 PRO A 75 ? TYR A 86 ? PRO A 189 TYR A 200 1 ? 12 HELX_P HELX_P7 7 ASN A 93 ? LYS A 105 ? ASN A 207 LYS A 219 1 ? 13 HELX_P HELX_P8 8 GLY A 118 ? SER A 123 ? GLY A 232 SER A 237 1 ? 6 HELX_P HELX_P9 9 PRO A 126 ? SER A 128 ? PRO A 240 SER A 242 5 ? 3 HELX_P HELX_P10 10 ILE A 154 ? ALA A 160 ? ILE A 268 ALA A 274 1 ? 7 HELX_P HELX_P11 11 PRO A 185 ? LEU A 189 ? PRO A 299 LEU A 303 5 ? 5 HELX_P HELX_P12 12 LEU A 190 ? ALA A 198 ? LEU A 304 ALA A 312 1 ? 9 HELX_P HELX_P13 13 PHE A 213 ? ALA A 219 ? PHE A 327 ALA A 333 5 ? 7 HELX_P HELX_P14 14 GLY A 235 ? HIS A 240 ? GLY A 349 HIS A 354 1 ? 6 HELX_P HELX_P15 15 ASP A 251 ? GLY A 264 ? ASP A 365 GLY A 378 1 ? 14 HELX_P HELX_P16 16 TRP A 265 ? LEU A 280 ? TRP A 379 LEU A 394 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? B GLY 4 C ? ? ? 1_555 B ALY 5 N ? ? B GLY 641 B ALY 642 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale both ? B ALY 5 C ? ? ? 1_555 B VAL 6 N ? ? B ALY 642 B VAL 643 1_555 ? ? ? ? ? ? ? 1.330 ? metalc1 metalc ? ? A CYS 142 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 256 A ZN 1 1_555 ? ? ? ? ? ? ? 2.363 ? metalc2 metalc ? ? A CYS 145 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 259 A ZN 1 1_555 ? ? ? ? ? ? ? 2.325 ? metalc3 metalc ? ? A CYS 166 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 280 A ZN 1 1_555 ? ? ? ? ? ? ? 2.316 ? metalc4 metalc ? ? A CYS 169 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 283 A ZN 1 1_555 ? ? ? ? ? ? ? 2.321 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 7 A . ? GLY 121 A LYS 8 A ? LYS 122 A 1 -5.13 2 GLU 211 A . ? GLU 325 A PRO 212 A ? PRO 326 A 1 3.90 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 130 ? GLU A 132 ? LEU A 244 GLU A 246 A 2 LEU A 108 ? THR A 113 ? LEU A 222 THR A 227 A 3 VAL A 26 ? VAL A 30 ? VAL A 140 VAL A 144 A 4 LEU A 200 ? LEU A 204 ? LEU A 314 LEU A 318 A 5 ARG A 226 ? ASN A 230 ? ARG A 340 ASN A 344 A 6 ASP A 245 ? LEU A 249 ? ASP A 359 LEU A 363 B 1 PRO A 148 ? PRO A 150 ? PRO A 262 PRO A 264 B 2 GLY A 135 ? CYS A 142 ? GLY A 249 CYS A 256 B 3 VAL A 173 ? ILE A 177 ? VAL A 287 ILE A 291 C 1 VAL A 210 ? GLU A 211 ? VAL A 324 GLU A 325 C 2 VAL B 6 ? MET B 7 ? VAL B 643 MET B 644 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 131 ? O VAL A 245 N LEU A 111 ? N LEU A 225 A 2 3 O TYR A 112 ? O TYR A 226 N VAL A 28 ? N VAL A 142 A 3 4 N MET A 29 ? N MET A 143 O LEU A 202 ? O LEU A 316 A 4 5 N ILE A 203 ? N ILE A 317 O LEU A 227 ? O LEU A 341 A 5 6 N LEU A 228 ? N LEU A 342 O GLN A 248 ? O GLN A 362 B 1 2 O PHE A 149 ? O PHE A 263 N ALA A 140 ? N ALA A 254 B 2 3 N SER A 139 ? N SER A 253 O ASP A 176 ? O ASP A 290 C 1 2 N GLU A 211 ? N GLU A 325 O VAL B 6 ? O VAL B 643 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 3' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE BCT A 4' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 5' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 142 ? CYS A 256 . ? 1_555 ? 2 AC1 4 CYS A 145 ? CYS A 259 . ? 1_555 ? 3 AC1 4 CYS A 166 ? CYS A 280 . ? 1_555 ? 4 AC1 4 CYS A 169 ? CYS A 283 . ? 1_555 ? 5 AC2 7 HOH H . ? HOH A 18 . ? 1_555 ? 6 AC2 7 VAL A 163 ? VAL A 277 . ? 1_555 ? 7 AC2 7 ARG A 165 ? ARG A 279 . ? 1_555 ? 8 AC2 7 ARG A 270 ? ARG A 384 . ? 8_555 ? 9 AC2 7 HOH H . ? HOH A 466 . ? 1_555 ? 10 AC2 7 HOH H . ? HOH A 501 . ? 1_555 ? 11 AC2 7 HOH H . ? HOH A 522 . ? 1_555 ? 12 AC3 4 ARG A 21 ? ARG A 135 . ? 1_555 ? 13 AC3 4 GLN A 24 ? GLN A 138 . ? 1_555 ? 14 AC3 4 LYS A 105 ? LYS A 219 . ? 4_555 ? 15 AC3 4 GLU A 268 ? GLU A 382 . ? 4_555 ? 16 AC4 5 HOH H . ? HOH A 44 . ? 1_555 ? 17 AC4 5 HIS A 103 ? HIS A 217 . ? 1_555 ? 18 AC4 5 GLY A 106 ? GLY A 220 . ? 1_555 ? 19 AC4 5 LYS A 129 ? LYS A 243 . ? 1_555 ? 20 AC4 5 HOH H . ? HOH A 472 . ? 1_555 ? 21 AC5 4 HOH H . ? HOH A 42 . ? 3_654 ? 22 AC5 4 PRO A 185 ? PRO A 299 . ? 3_654 ? 23 AC5 4 GLN A 186 ? GLN A 300 . ? 3_654 ? 24 AC5 4 SER B 3 ? SER B 640 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GLR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GLR _atom_sites.fract_transf_matrix[1][1] 0.012789 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007748 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012837 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 115 ? ? ? A . n A 1 2 ASN 2 116 ? ? ? A . n A 1 3 ALA 3 117 ? ? ? A . n A 1 4 SER 4 118 ? ? ? A . n A 1 5 ASP 5 119 ? ? ? A . n A 1 6 LYS 6 120 ? ? ? A . n A 1 7 GLY 7 121 121 GLY GLY A . n A 1 8 LYS 8 122 122 LYS LYS A . n A 1 9 LEU 9 123 123 LEU LEU A . n A 1 10 SER 10 124 124 SER SER A . n A 1 11 LEU 11 125 125 LEU LEU A . n A 1 12 GLN 12 126 126 GLN GLN A . n A 1 13 ASP 13 127 127 ASP ASP A . n A 1 14 VAL 14 128 128 VAL VAL A . n A 1 15 ALA 15 129 129 ALA ALA A . n A 1 16 GLU 16 130 130 GLU GLU A . n A 1 17 LEU 17 131 131 LEU LEU A . n A 1 18 ILE 18 132 132 ILE ILE A . n A 1 19 ARG 19 133 133 ARG ARG A . n A 1 20 ALA 20 134 134 ALA ALA A . n A 1 21 ARG 21 135 135 ARG ARG A . n A 1 22 ALA 22 136 136 ALA ALA A . n A 1 23 CYS 23 137 137 CYS CYS A . n A 1 24 GLN 24 138 138 GLN GLN A . n A 1 25 ARG 25 139 139 ARG ARG A . n A 1 26 VAL 26 140 140 VAL VAL A . n A 1 27 VAL 27 141 141 VAL VAL A . n A 1 28 VAL 28 142 142 VAL VAL A . n A 1 29 MET 29 143 143 MET MET A . n A 1 30 VAL 30 144 144 VAL VAL A . n A 1 31 GLY 31 145 145 GLY GLY A . n A 1 32 ALA 32 146 146 ALA ALA A . n A 1 33 GLY 33 147 147 GLY GLY A . n A 1 34 ILE 34 148 148 ILE ILE A . n A 1 35 SER 35 149 149 SER SER A . n A 1 36 THR 36 150 150 THR THR A . n A 1 37 PRO 37 151 151 PRO PRO A . n A 1 38 SER 38 152 152 SER SER A . n A 1 39 GLY 39 153 153 GLY GLY A . n A 1 40 ILE 40 154 154 ILE ILE A . n A 1 41 PRO 41 155 155 PRO PRO A . n A 1 42 ASP 42 156 156 ASP ASP A . n A 1 43 PHE 43 157 157 PHE PHE A . n A 1 44 ARG 44 158 158 ARG ARG A . n A 1 45 SER 45 159 159 SER SER A . n A 1 46 PRO 46 160 160 PRO PRO A . n A 1 47 GLY 47 161 161 GLY GLY A . n A 1 48 SER 48 162 162 SER SER A . n A 1 49 GLY 49 163 163 GLY GLY A . n A 1 50 LEU 50 164 164 LEU LEU A . n A 1 51 TYR 51 165 165 TYR TYR A . n A 1 52 SER 52 166 166 SER SER A . n A 1 53 ASN 53 167 167 ASN ASN A . n A 1 54 LEU 54 168 168 LEU LEU A . n A 1 55 GLN 55 169 169 GLN GLN A . n A 1 56 GLN 56 170 170 GLN GLN A . n A 1 57 TYR 57 171 171 TYR TYR A . n A 1 58 ASP 58 172 172 ASP ASP A . n A 1 59 LEU 59 173 173 LEU LEU A . n A 1 60 PRO 60 174 174 PRO PRO A . n A 1 61 TYR 61 175 175 TYR TYR A . n A 1 62 PRO 62 176 176 PRO PRO A . n A 1 63 GLU 63 177 177 GLU GLU A . n A 1 64 ALA 64 178 178 ALA ALA A . n A 1 65 ILE 65 179 179 ILE ILE A . n A 1 66 PHE 66 180 180 PHE PHE A . n A 1 67 GLU 67 181 181 GLU GLU A . n A 1 68 LEU 68 182 182 LEU LEU A . n A 1 69 PRO 69 183 183 PRO PRO A . n A 1 70 PHE 70 184 184 PHE PHE A . n A 1 71 PHE 71 185 185 PHE PHE A . n A 1 72 PHE 72 186 186 PHE PHE A . n A 1 73 HIS 73 187 187 HIS HIS A . n A 1 74 ASN 74 188 188 ASN ASN A . n A 1 75 PRO 75 189 189 PRO PRO A . n A 1 76 LYS 76 190 190 LYS LYS A . n A 1 77 PRO 77 191 191 PRO PRO A . n A 1 78 PHE 78 192 192 PHE PHE A . n A 1 79 PHE 79 193 193 PHE PHE A . n A 1 80 THR 80 194 194 THR THR A . n A 1 81 LEU 81 195 195 LEU LEU A . n A 1 82 ALA 82 196 196 ALA ALA A . n A 1 83 LYS 83 197 197 LYS LYS A . n A 1 84 GLU 84 198 198 GLU GLU A . n A 1 85 LEU 85 199 199 LEU LEU A . n A 1 86 TYR 86 200 200 TYR TYR A . n A 1 87 PRO 87 201 201 PRO PRO A . n A 1 88 GLY 88 202 202 GLY GLY A . n A 1 89 ASN 89 203 203 ASN ASN A . n A 1 90 TYR 90 204 204 TYR TYR A . n A 1 91 LYS 91 205 205 LYS LYS A . n A 1 92 PRO 92 206 206 PRO PRO A . n A 1 93 ASN 93 207 207 ASN ASN A . n A 1 94 VAL 94 208 208 VAL VAL A . n A 1 95 THR 95 209 209 THR THR A . n A 1 96 HIS 96 210 210 HIS HIS A . n A 1 97 TYR 97 211 211 TYR TYR A . n A 1 98 PHE 98 212 212 PHE PHE A . n A 1 99 LEU 99 213 213 LEU LEU A . n A 1 100 ARG 100 214 214 ARG ARG A . n A 1 101 LEU 101 215 215 LEU LEU A . n A 1 102 LEU 102 216 216 LEU LEU A . n A 1 103 HIS 103 217 217 HIS HIS A . n A 1 104 ASP 104 218 218 ASP ASP A . n A 1 105 LYS 105 219 219 LYS LYS A . n A 1 106 GLY 106 220 220 GLY GLY A . n A 1 107 LEU 107 221 221 LEU LEU A . n A 1 108 LEU 108 222 222 LEU LEU A . n A 1 109 LEU 109 223 223 LEU LEU A . n A 1 110 ARG 110 224 224 ARG ARG A . n A 1 111 LEU 111 225 225 LEU LEU A . n A 1 112 TYR 112 226 226 TYR TYR A . n A 1 113 THR 113 227 227 THR THR A . n A 1 114 GLN 114 228 228 GLN GLN A . n A 1 115 ASN 115 229 229 ASN ASN A . n A 1 116 ILE 116 230 230 ILE ILE A . n A 1 117 ASP 117 231 231 ASP ASP A . n A 1 118 GLY 118 232 232 GLY GLY A . n A 1 119 LEU 119 233 233 LEU LEU A . n A 1 120 GLU 120 234 234 GLU GLU A . n A 1 121 ARG 121 235 235 ARG ARG A . n A 1 122 VAL 122 236 236 VAL VAL A . n A 1 123 SER 123 237 237 SER SER A . n A 1 124 GLY 124 238 238 GLY GLY A . n A 1 125 ILE 125 239 239 ILE ILE A . n A 1 126 PRO 126 240 240 PRO PRO A . n A 1 127 ALA 127 241 241 ALA ALA A . n A 1 128 SER 128 242 242 SER SER A . n A 1 129 LYS 129 243 243 LYS LYS A . n A 1 130 LEU 130 244 244 LEU LEU A . n A 1 131 VAL 131 245 245 VAL VAL A . n A 1 132 GLU 132 246 246 GLU GLU A . n A 1 133 ALA 133 247 247 ALA ALA A . n A 1 134 HIS 134 248 248 HIS HIS A . n A 1 135 GLY 135 249 249 GLY GLY A . n A 1 136 THR 136 250 250 THR THR A . n A 1 137 PHE 137 251 251 PHE PHE A . n A 1 138 ALA 138 252 252 ALA ALA A . n A 1 139 SER 139 253 253 SER SER A . n A 1 140 ALA 140 254 254 ALA ALA A . n A 1 141 THR 141 255 255 THR THR A . n A 1 142 CYS 142 256 256 CYS CYS A . n A 1 143 THR 143 257 257 THR THR A . n A 1 144 VAL 144 258 258 VAL VAL A . n A 1 145 CYS 145 259 259 CYS CYS A . n A 1 146 GLN 146 260 260 GLN GLN A . n A 1 147 ARG 147 261 261 ARG ARG A . n A 1 148 PRO 148 262 262 PRO PRO A . n A 1 149 PHE 149 263 263 PHE PHE A . n A 1 150 PRO 150 264 264 PRO PRO A . n A 1 151 GLY 151 265 265 GLY GLY A . n A 1 152 GLU 152 266 266 GLU GLU A . n A 1 153 ASP 153 267 267 ASP ASP A . n A 1 154 ILE 154 268 268 ILE ILE A . n A 1 155 ARG 155 269 269 ARG ARG A . n A 1 156 ALA 156 270 270 ALA ALA A . n A 1 157 ASP 157 271 271 ASP ASP A . n A 1 158 VAL 158 272 272 VAL VAL A . n A 1 159 MET 159 273 273 MET MET A . n A 1 160 ALA 160 274 274 ALA ALA A . n A 1 161 ASP 161 275 275 ASP ASP A . n A 1 162 ARG 162 276 276 ARG ARG A . n A 1 163 VAL 163 277 277 VAL VAL A . n A 1 164 PRO 164 278 278 PRO PRO A . n A 1 165 ARG 165 279 279 ARG ARG A . n A 1 166 CYS 166 280 280 CYS CYS A . n A 1 167 PRO 167 281 281 PRO PRO A . n A 1 168 VAL 168 282 282 VAL VAL A . n A 1 169 CYS 169 283 283 CYS CYS A . n A 1 170 THR 170 284 284 THR THR A . n A 1 171 GLY 171 285 285 GLY GLY A . n A 1 172 VAL 172 286 286 VAL VAL A . n A 1 173 VAL 173 287 287 VAL VAL A . n A 1 174 LYS 174 288 288 LYS LYS A . n A 1 175 PRO 175 289 289 PRO PRO A . n A 1 176 ASP 176 290 290 ASP ASP A . n A 1 177 ILE 177 291 291 ILE ILE A . n A 1 178 VAL 178 292 292 VAL VAL A . n A 1 179 PHE 179 293 293 PHE PHE A . n A 1 180 PHE 180 294 294 PHE PHE A . n A 1 181 GLY 181 295 295 GLY GLY A . n A 1 182 GLU 182 296 296 GLU GLU A . n A 1 183 PRO 183 297 297 PRO PRO A . n A 1 184 LEU 184 298 298 LEU LEU A . n A 1 185 PRO 185 299 299 PRO PRO A . n A 1 186 GLN 186 300 300 GLN GLN A . n A 1 187 ARG 187 301 301 ARG ARG A . n A 1 188 PHE 188 302 302 PHE PHE A . n A 1 189 LEU 189 303 303 LEU LEU A . n A 1 190 LEU 190 304 304 LEU LEU A . n A 1 191 HIS 191 305 305 HIS HIS A . n A 1 192 VAL 192 306 306 VAL VAL A . n A 1 193 VAL 193 307 307 VAL VAL A . n A 1 194 ASP 194 308 308 ASP ASP A . n A 1 195 PHE 195 309 309 PHE PHE A . n A 1 196 PRO 196 310 310 PRO PRO A . n A 1 197 MET 197 311 311 MET MET A . n A 1 198 ALA 198 312 312 ALA ALA A . n A 1 199 ASP 199 313 313 ASP ASP A . n A 1 200 LEU 200 314 314 LEU LEU A . n A 1 201 LEU 201 315 315 LEU LEU A . n A 1 202 LEU 202 316 316 LEU LEU A . n A 1 203 ILE 203 317 317 ILE ILE A . n A 1 204 LEU 204 318 318 LEU LEU A . n A 1 205 GLY 205 319 319 GLY GLY A . n A 1 206 THR 206 320 320 THR THR A . n A 1 207 SER 207 321 321 SER SER A . n A 1 208 LEU 208 322 322 LEU LEU A . n A 1 209 GLU 209 323 323 GLU GLU A . n A 1 210 VAL 210 324 324 VAL VAL A . n A 1 211 GLU 211 325 325 GLU GLU A . n A 1 212 PRO 212 326 326 PRO PRO A . n A 1 213 PHE 213 327 327 PHE PHE A . n A 1 214 ALA 214 328 328 ALA ALA A . n A 1 215 SER 215 329 329 SER SER A . n A 1 216 LEU 216 330 330 LEU LEU A . n A 1 217 THR 217 331 331 THR THR A . n A 1 218 GLU 218 332 332 GLU GLU A . n A 1 219 ALA 219 333 333 ALA ALA A . n A 1 220 VAL 220 334 334 VAL VAL A . n A 1 221 ARG 221 335 335 ARG ARG A . n A 1 222 SER 222 336 336 SER SER A . n A 1 223 SER 223 337 337 SER SER A . n A 1 224 VAL 224 338 338 VAL VAL A . n A 1 225 PRO 225 339 339 PRO PRO A . n A 1 226 ARG 226 340 340 ARG ARG A . n A 1 227 LEU 227 341 341 LEU LEU A . n A 1 228 LEU 228 342 342 LEU LEU A . n A 1 229 ILE 229 343 343 ILE ILE A . n A 1 230 ASN 230 344 344 ASN ASN A . n A 1 231 ARG 231 345 345 ARG ARG A . n A 1 232 ASP 232 346 346 ASP ASP A . n A 1 233 LEU 233 347 347 LEU LEU A . n A 1 234 VAL 234 348 348 VAL VAL A . n A 1 235 GLY 235 349 349 GLY GLY A . n A 1 236 PRO 236 350 350 PRO PRO A . n A 1 237 LEU 237 351 351 LEU LEU A . n A 1 238 ALA 238 352 352 ALA ALA A . n A 1 239 TRP 239 353 353 TRP TRP A . n A 1 240 HIS 240 354 354 HIS HIS A . n A 1 241 PRO 241 355 355 PRO PRO A . n A 1 242 ARG 242 356 356 ARG ARG A . n A 1 243 SER 243 357 357 SER SER A . n A 1 244 ARG 244 358 358 ARG ARG A . n A 1 245 ASP 245 359 359 ASP ASP A . n A 1 246 VAL 246 360 360 VAL VAL A . n A 1 247 ALA 247 361 361 ALA ALA A . n A 1 248 GLN 248 362 362 GLN GLN A . n A 1 249 LEU 249 363 363 LEU LEU A . n A 1 250 GLY 250 364 364 GLY GLY A . n A 1 251 ASP 251 365 365 ASP ASP A . n A 1 252 VAL 252 366 366 VAL VAL A . n A 1 253 VAL 253 367 367 VAL VAL A . n A 1 254 HIS 254 368 368 HIS HIS A . n A 1 255 GLY 255 369 369 GLY GLY A . n A 1 256 VAL 256 370 370 VAL VAL A . n A 1 257 GLU 257 371 371 GLU GLU A . n A 1 258 SER 258 372 372 SER SER A . n A 1 259 LEU 259 373 373 LEU LEU A . n A 1 260 VAL 260 374 374 VAL VAL A . n A 1 261 GLU 261 375 375 GLU GLU A . n A 1 262 LEU 262 376 376 LEU LEU A . n A 1 263 LEU 263 377 377 LEU LEU A . n A 1 264 GLY 264 378 378 GLY GLY A . n A 1 265 TRP 265 379 379 TRP TRP A . n A 1 266 THR 266 380 380 THR THR A . n A 1 267 GLU 267 381 381 GLU GLU A . n A 1 268 GLU 268 382 382 GLU GLU A . n A 1 269 MET 269 383 383 MET MET A . n A 1 270 ARG 270 384 384 ARG ARG A . n A 1 271 ASP 271 385 385 ASP ASP A . n A 1 272 LEU 272 386 386 LEU LEU A . n A 1 273 VAL 273 387 387 VAL VAL A . n A 1 274 GLN 274 388 388 GLN GLN A . n A 1 275 ARG 275 389 389 ARG ARG A . n A 1 276 GLU 276 390 390 GLU GLU A . n A 1 277 THR 277 391 391 THR THR A . n A 1 278 GLY 278 392 392 GLY GLY A . n A 1 279 LYS 279 393 393 LYS LYS A . n A 1 280 LEU 280 394 394 LEU LEU A . n A 1 281 ASP 281 395 ? ? ? A . n A 1 282 GLY 282 396 ? ? ? A . n A 1 283 PRO 283 397 ? ? ? A . n A 1 284 ASP 284 398 ? ? ? A . n A 1 285 LYS 285 399 ? ? ? A . n B 2 1 THR 1 638 ? ? ? B . n B 2 2 ARG 2 639 639 ARG ARG B . n B 2 3 SER 3 640 640 SER SER B . n B 2 4 GLY 4 641 641 GLY GLY B . n B 2 5 ALY 5 642 642 ALY ALY B . n B 2 6 VAL 6 643 643 VAL VAL B . n B 2 7 MET 7 644 644 MET MET B . n B 2 8 ARG 8 645 645 ARG ARG B . n B 2 9 ARG 9 646 ? ? ? B . n B 2 10 LEU 10 647 ? ? ? B . n B 2 11 LEU 11 648 ? ? ? B . n B 2 12 ARG 12 649 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 1 1 ZN ZN A . D 4 SO4 1 3 3 SO4 SO4 A . E 5 BCT 1 4 4 BCT BCT A . F 6 GOL 1 5 5 GOL GOL A . G 4 SO4 1 2 2 SO4 SO4 B . H 7 HOH 1 2 2 HOH HOH A . H 7 HOH 2 6 6 HOH HOH A . H 7 HOH 3 8 8 HOH HOH A . H 7 HOH 4 10 10 HOH HOH A . H 7 HOH 5 11 11 HOH HOH A . H 7 HOH 6 12 12 HOH HOH A . H 7 HOH 7 13 13 HOH HOH A . H 7 HOH 8 14 14 HOH HOH A . H 7 HOH 9 16 16 HOH HOH A . H 7 HOH 10 17 17 HOH HOH A . H 7 HOH 11 18 18 HOH HOH A . H 7 HOH 12 20 20 HOH HOH A . H 7 HOH 13 21 21 HOH HOH A . H 7 HOH 14 22 22 HOH HOH A . H 7 HOH 15 23 23 HOH HOH A . H 7 HOH 16 24 24 HOH HOH A . H 7 HOH 17 25 25 HOH HOH A . H 7 HOH 18 26 26 HOH HOH A . H 7 HOH 19 28 28 HOH HOH A . H 7 HOH 20 29 29 HOH HOH A . H 7 HOH 21 30 30 HOH HOH A . H 7 HOH 22 31 31 HOH HOH A . H 7 HOH 23 32 32 HOH HOH A . H 7 HOH 24 33 33 HOH HOH A . H 7 HOH 25 34 34 HOH HOH A . H 7 HOH 26 36 36 HOH HOH A . H 7 HOH 27 37 37 HOH HOH A . H 7 HOH 28 38 38 HOH HOH A . H 7 HOH 29 39 39 HOH HOH A . H 7 HOH 30 40 40 HOH HOH A . H 7 HOH 31 41 41 HOH HOH A . H 7 HOH 32 42 42 HOH HOH A . H 7 HOH 33 43 43 HOH HOH A . H 7 HOH 34 44 44 HOH HOH A . H 7 HOH 35 45 45 HOH HOH A . H 7 HOH 36 46 46 HOH HOH A . H 7 HOH 37 47 47 HOH HOH A . H 7 HOH 38 49 49 HOH HOH A . H 7 HOH 39 50 50 HOH HOH A . H 7 HOH 40 51 51 HOH HOH A . H 7 HOH 41 52 52 HOH HOH A . H 7 HOH 42 54 54 HOH HOH A . H 7 HOH 43 55 55 HOH HOH A . H 7 HOH 44 56 56 HOH HOH A . H 7 HOH 45 57 57 HOH HOH A . H 7 HOH 46 58 58 HOH HOH A . H 7 HOH 47 59 59 HOH HOH A . H 7 HOH 48 60 60 HOH HOH A . H 7 HOH 49 61 61 HOH HOH A . H 7 HOH 50 62 62 HOH HOH A . H 7 HOH 51 63 63 HOH HOH A . H 7 HOH 52 64 64 HOH HOH A . H 7 HOH 53 66 66 HOH HOH A . H 7 HOH 54 67 67 HOH HOH A . H 7 HOH 55 68 68 HOH HOH A . H 7 HOH 56 70 70 HOH HOH A . H 7 HOH 57 71 71 HOH HOH A . H 7 HOH 58 72 72 HOH HOH A . H 7 HOH 59 73 73 HOH HOH A . H 7 HOH 60 74 74 HOH HOH A . H 7 HOH 61 75 75 HOH HOH A . H 7 HOH 62 76 76 HOH HOH A . H 7 HOH 63 77 77 HOH HOH A . H 7 HOH 64 78 78 HOH HOH A . H 7 HOH 65 80 80 HOH HOH A . H 7 HOH 66 81 81 HOH HOH A . H 7 HOH 67 83 83 HOH HOH A . H 7 HOH 68 85 85 HOH HOH A . H 7 HOH 69 86 86 HOH HOH A . H 7 HOH 70 87 87 HOH HOH A . H 7 HOH 71 88 88 HOH HOH A . H 7 HOH 72 89 89 HOH HOH A . H 7 HOH 73 90 90 HOH HOH A . H 7 HOH 74 91 91 HOH HOH A . H 7 HOH 75 93 93 HOH HOH A . H 7 HOH 76 94 94 HOH HOH A . H 7 HOH 77 95 95 HOH HOH A . H 7 HOH 78 96 96 HOH HOH A . H 7 HOH 79 97 97 HOH HOH A . H 7 HOH 80 98 98 HOH HOH A . H 7 HOH 81 99 99 HOH HOH A . H 7 HOH 82 101 101 HOH HOH A . H 7 HOH 83 102 102 HOH HOH A . H 7 HOH 84 103 103 HOH HOH A . H 7 HOH 85 105 105 HOH HOH A . H 7 HOH 86 106 106 HOH HOH A . H 7 HOH 87 107 107 HOH HOH A . H 7 HOH 88 110 110 HOH HOH A . H 7 HOH 89 112 112 HOH HOH A . H 7 HOH 90 114 114 HOH HOH A . H 7 HOH 91 400 400 HOH HOH A . H 7 HOH 92 401 401 HOH HOH A . H 7 HOH 93 402 402 HOH HOH A . H 7 HOH 94 403 403 HOH HOH A . H 7 HOH 95 404 404 HOH HOH A . H 7 HOH 96 405 405 HOH HOH A . H 7 HOH 97 406 406 HOH HOH A . H 7 HOH 98 407 407 HOH HOH A . H 7 HOH 99 408 408 HOH HOH A . H 7 HOH 100 409 409 HOH HOH A . H 7 HOH 101 410 410 HOH HOH A . H 7 HOH 102 411 411 HOH HOH A . H 7 HOH 103 412 412 HOH HOH A . H 7 HOH 104 413 413 HOH HOH A . H 7 HOH 105 414 414 HOH HOH A . H 7 HOH 106 415 415 HOH HOH A . H 7 HOH 107 416 416 HOH HOH A . H 7 HOH 108 417 417 HOH HOH A . H 7 HOH 109 418 418 HOH HOH A . H 7 HOH 110 419 419 HOH HOH A . H 7 HOH 111 420 420 HOH HOH A . H 7 HOH 112 421 421 HOH HOH A . H 7 HOH 113 422 422 HOH HOH A . H 7 HOH 114 423 423 HOH HOH A . H 7 HOH 115 424 424 HOH HOH A . H 7 HOH 116 425 425 HOH HOH A . H 7 HOH 117 426 426 HOH HOH A . H 7 HOH 118 427 427 HOH HOH A . H 7 HOH 119 428 428 HOH HOH A . H 7 HOH 120 429 429 HOH HOH A . H 7 HOH 121 430 430 HOH HOH A . H 7 HOH 122 431 431 HOH HOH A . H 7 HOH 123 432 432 HOH HOH A . H 7 HOH 124 433 433 HOH HOH A . H 7 HOH 125 434 434 HOH HOH A . H 7 HOH 126 435 435 HOH HOH A . H 7 HOH 127 436 436 HOH HOH A . H 7 HOH 128 437 437 HOH HOH A . H 7 HOH 129 438 438 HOH HOH A . H 7 HOH 130 439 439 HOH HOH A . H 7 HOH 131 440 440 HOH HOH A . H 7 HOH 132 441 441 HOH HOH A . H 7 HOH 133 442 442 HOH HOH A . H 7 HOH 134 443 443 HOH HOH A . H 7 HOH 135 444 444 HOH HOH A . H 7 HOH 136 445 445 HOH HOH A . H 7 HOH 137 446 446 HOH HOH A . H 7 HOH 138 447 447 HOH HOH A . H 7 HOH 139 448 448 HOH HOH A . H 7 HOH 140 449 449 HOH HOH A . H 7 HOH 141 450 450 HOH HOH A . H 7 HOH 142 451 451 HOH HOH A . H 7 HOH 143 452 452 HOH HOH A . H 7 HOH 144 453 453 HOH HOH A . H 7 HOH 145 454 454 HOH HOH A . H 7 HOH 146 455 455 HOH HOH A . H 7 HOH 147 456 456 HOH HOH A . H 7 HOH 148 457 457 HOH HOH A . H 7 HOH 149 458 458 HOH HOH A . H 7 HOH 150 459 459 HOH HOH A . H 7 HOH 151 460 460 HOH HOH A . H 7 HOH 152 461 461 HOH HOH A . H 7 HOH 153 462 462 HOH HOH A . H 7 HOH 154 463 463 HOH HOH A . H 7 HOH 155 464 464 HOH HOH A . H 7 HOH 156 465 465 HOH HOH A . H 7 HOH 157 466 466 HOH HOH A . H 7 HOH 158 467 467 HOH HOH A . H 7 HOH 159 468 468 HOH HOH A . H 7 HOH 160 469 469 HOH HOH A . H 7 HOH 161 470 470 HOH HOH A . H 7 HOH 162 471 471 HOH HOH A . H 7 HOH 163 472 472 HOH HOH A . H 7 HOH 164 473 473 HOH HOH A . H 7 HOH 165 474 474 HOH HOH A . H 7 HOH 166 475 475 HOH HOH A . H 7 HOH 167 476 476 HOH HOH A . H 7 HOH 168 477 477 HOH HOH A . H 7 HOH 169 478 478 HOH HOH A . H 7 HOH 170 479 479 HOH HOH A . H 7 HOH 171 480 480 HOH HOH A . H 7 HOH 172 481 481 HOH HOH A . H 7 HOH 173 482 482 HOH HOH A . H 7 HOH 174 483 483 HOH HOH A . H 7 HOH 175 484 484 HOH HOH A . H 7 HOH 176 485 485 HOH HOH A . H 7 HOH 177 486 486 HOH HOH A . H 7 HOH 178 487 487 HOH HOH A . H 7 HOH 179 488 488 HOH HOH A . H 7 HOH 180 489 489 HOH HOH A . H 7 HOH 181 490 490 HOH HOH A . H 7 HOH 182 491 491 HOH HOH A . H 7 HOH 183 492 492 HOH HOH A . H 7 HOH 184 493 493 HOH HOH A . H 7 HOH 185 494 494 HOH HOH A . H 7 HOH 186 495 495 HOH HOH A . H 7 HOH 187 496 496 HOH HOH A . H 7 HOH 188 497 497 HOH HOH A . H 7 HOH 189 498 498 HOH HOH A . H 7 HOH 190 499 499 HOH HOH A . H 7 HOH 191 500 500 HOH HOH A . H 7 HOH 192 501 501 HOH HOH A . H 7 HOH 193 502 502 HOH HOH A . H 7 HOH 194 503 503 HOH HOH A . H 7 HOH 195 504 504 HOH HOH A . H 7 HOH 196 505 505 HOH HOH A . H 7 HOH 197 506 506 HOH HOH A . H 7 HOH 198 507 507 HOH HOH A . H 7 HOH 199 508 508 HOH HOH A . H 7 HOH 200 509 509 HOH HOH A . H 7 HOH 201 510 510 HOH HOH A . H 7 HOH 202 511 511 HOH HOH A . H 7 HOH 203 512 512 HOH HOH A . H 7 HOH 204 513 513 HOH HOH A . H 7 HOH 205 514 514 HOH HOH A . H 7 HOH 206 516 516 HOH HOH A . H 7 HOH 207 517 517 HOH HOH A . H 7 HOH 208 518 518 HOH HOH A . H 7 HOH 209 519 519 HOH HOH A . H 7 HOH 210 520 520 HOH HOH A . H 7 HOH 211 521 521 HOH HOH A . H 7 HOH 212 522 522 HOH HOH A . H 7 HOH 213 523 523 HOH HOH A . H 7 HOH 214 524 524 HOH HOH A . H 7 HOH 215 525 525 HOH HOH A . I 7 HOH 1 3 3 HOH HOH B . I 7 HOH 2 53 53 HOH HOH B . I 7 HOH 3 100 100 HOH HOH B . I 7 HOH 4 176 176 HOH HOH B . I 7 HOH 5 187 187 HOH HOH B . I 7 HOH 6 199 199 HOH HOH B . I 7 HOH 7 242 242 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ALY _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id ALY _pdbx_struct_mod_residue.auth_seq_id 642 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details 'N(6)-ACETYLLYSINE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5050 ? 1 MORE -77 ? 1 'SSA (A^2)' 24560 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 78.1900000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -38.9495000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 142 ? A CYS 256 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 145 ? A CYS 259 ? 1_555 108.5 ? 2 SG ? A CYS 142 ? A CYS 256 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 166 ? A CYS 280 ? 1_555 107.7 ? 3 SG ? A CYS 145 ? A CYS 259 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 166 ? A CYS 280 ? 1_555 110.9 ? 4 SG ? A CYS 142 ? A CYS 256 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 169 ? A CYS 283 ? 1_555 95.5 ? 5 SG ? A CYS 145 ? A CYS 259 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 169 ? A CYS 283 ? 1_555 117.9 ? 6 SG ? A CYS 166 ? A CYS 280 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 SG ? A CYS 169 ? A CYS 283 ? 1_555 114.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software 3 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0066 ? 1 CNX refinement . ? 2 HKL-2000 'data collection' . ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 CNX phasing . ? 6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 115 ? A SER 1 2 1 Y 1 A ASN 116 ? A ASN 2 3 1 Y 1 A ALA 117 ? A ALA 3 4 1 Y 1 A SER 118 ? A SER 4 5 1 Y 1 A ASP 119 ? A ASP 5 6 1 Y 1 A LYS 120 ? A LYS 6 7 1 Y 1 A ASP 395 ? A ASP 281 8 1 Y 1 A GLY 396 ? A GLY 282 9 1 Y 1 A PRO 397 ? A PRO 283 10 1 Y 1 A ASP 398 ? A ASP 284 11 1 Y 1 A LYS 399 ? A LYS 285 12 1 Y 1 B THR 638 ? B THR 1 13 1 Y 1 B ARG 646 ? B ARG 9 14 1 Y 1 B LEU 647 ? B LEU 10 15 1 Y 1 B LEU 648 ? B LEU 11 16 1 Y 1 B ARG 649 ? B ARG 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'SULFATE ION' SO4 5 'BICARBONATE ION' BCT 6 GLYCEROL GOL 7 water HOH #