data_3GRY # _entry.id 3GRY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GRY pdb_00003gry 10.2210/pdb3gry/pdb RCSB RCSB052236 ? ? WWPDB D_1000052236 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FYC 'Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi' unspecified PDB 3fYD 'Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi' unspecified PDB 1QYR '2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase' unspecified PDB 2H1R 'CRYSTAL STRUCTURE OF A DIMETHYLADENOSINE TRANSFERASE FROM P. Facilparum' unspecified PDB 1ZQ9 'CRYSTAL STRUCTURE OF HUMAN DIMETHYLADENOSINE TRANSFERASE' unspecified PDB 3FUV 'Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in space group P43212' unspecified PDB 3FUT 'Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in space group P21212' unspecified PDB 3FUU 'T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with Adenosine in space group P212121' unspecified PDB 3FUX ;T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with 5'-methylthioadenosine in space group P212121 ; unspecified PDB 3FUW ;T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with 5'-methylthioadenosine in space group P212121 ; unspecified PDB 3GRR 'Crystal Structure of the complex between S-Adenosyl Homocysteine and Methanocaldococcus jannaschi Dim1' unspecified PDB 3GRU 'Crystal Structure of the Complex between AMP and Methanocaldococcus jannaschi Dim1' unspecified PDB 3GRV 'Crystal Structure of the Complex between Adenosine and Methanocaldococcus jannaschi Dim1' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GRY _pdbx_database_status.recvd_initial_deposition_date 2009-03-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scarsdale, J.N.' 1 'Musayev, F.N.' 2 'Rife, J.P.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design.' Biochemistry 49 2697 2704 2010 BICHAW US 0006-2960 0033 ? 20163168 10.1021/bi901875x 1 'Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli' J.Mol.Biol. 339 337 353 2004 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary ;O'Farrell, H.C. ; 1 ? primary 'Musayev, F.N.' 2 ? primary 'Scarsdale, J.N.' 3 ? primary 'Rife, J.P.' 4 ? 1 ;O'Farrell, H.C. ; 5 ? 1 'Scarsdale, J.N.' 6 ? 1 'Rife, J.P.' 7 ? # _cell.entry_id 3GRY _cell.length_a 40.468 _cell.length_b 67.021 _cell.length_c 62.152 _cell.angle_alpha 90.00 _cell.angle_beta 107.85 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GRY _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dimethyladenosine transferase' 33877.305 1 2.1.1.- K137A,E138A ? ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase, 16S rRNA dimethylase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEI DKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLIKRGFDLAVLMYQYEFAKRMVAAAGT KDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKE LNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQNRGRL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEI DKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLIKRGFDLAVLMYQYEFAKRMVAAAGT KDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKE LNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQNRGRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 PHE n 1 23 LYS n 1 24 PRO n 1 25 LYS n 1 26 LYS n 1 27 LYS n 1 28 LEU n 1 29 GLY n 1 30 GLN n 1 31 CYS n 1 32 PHE n 1 33 LEU n 1 34 ILE n 1 35 ASP n 1 36 LYS n 1 37 ASN n 1 38 PHE n 1 39 VAL n 1 40 ASN n 1 41 LYS n 1 42 ALA n 1 43 VAL n 1 44 GLU n 1 45 SER n 1 46 ALA n 1 47 ASN n 1 48 LEU n 1 49 THR n 1 50 LYS n 1 51 ASP n 1 52 ASP n 1 53 VAL n 1 54 VAL n 1 55 LEU n 1 56 GLU n 1 57 ILE n 1 58 GLY n 1 59 LEU n 1 60 GLY n 1 61 LYS n 1 62 GLY n 1 63 ILE n 1 64 LEU n 1 65 THR n 1 66 GLU n 1 67 GLU n 1 68 LEU n 1 69 ALA n 1 70 LYS n 1 71 ASN n 1 72 ALA n 1 73 LYS n 1 74 LYS n 1 75 VAL n 1 76 TYR n 1 77 VAL n 1 78 ILE n 1 79 GLU n 1 80 ILE n 1 81 ASP n 1 82 LYS n 1 83 SER n 1 84 LEU n 1 85 GLU n 1 86 PRO n 1 87 TYR n 1 88 ALA n 1 89 ASN n 1 90 LYS n 1 91 LEU n 1 92 LYS n 1 93 GLU n 1 94 LEU n 1 95 TYR n 1 96 ASN n 1 97 ASN n 1 98 ILE n 1 99 GLU n 1 100 ILE n 1 101 ILE n 1 102 TRP n 1 103 GLY n 1 104 ASP n 1 105 ALA n 1 106 LEU n 1 107 LYS n 1 108 VAL n 1 109 ASP n 1 110 LEU n 1 111 ASN n 1 112 LYS n 1 113 LEU n 1 114 ASP n 1 115 PHE n 1 116 ASN n 1 117 LYS n 1 118 VAL n 1 119 VAL n 1 120 ALA n 1 121 ASN n 1 122 LEU n 1 123 PRO n 1 124 TYR n 1 125 GLN n 1 126 ILE n 1 127 SER n 1 128 SER n 1 129 PRO n 1 130 ILE n 1 131 THR n 1 132 PHE n 1 133 LYS n 1 134 LEU n 1 135 ILE n 1 136 LYS n 1 137 ARG n 1 138 GLY n 1 139 PHE n 1 140 ASP n 1 141 LEU n 1 142 ALA n 1 143 VAL n 1 144 LEU n 1 145 MET n 1 146 TYR n 1 147 GLN n 1 148 TYR n 1 149 GLU n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 ARG n 1 154 MET n 1 155 VAL n 1 156 ALA n 1 157 ALA n 1 158 ALA n 1 159 GLY n 1 160 THR n 1 161 LYS n 1 162 ASP n 1 163 TYR n 1 164 GLY n 1 165 ARG n 1 166 LEU n 1 167 SER n 1 168 VAL n 1 169 ALA n 1 170 VAL n 1 171 GLN n 1 172 SER n 1 173 ARG n 1 174 ALA n 1 175 ASP n 1 176 VAL n 1 177 GLU n 1 178 ILE n 1 179 VAL n 1 180 ALA n 1 181 LYS n 1 182 VAL n 1 183 PRO n 1 184 PRO n 1 185 SER n 1 186 ALA n 1 187 PHE n 1 188 TYR n 1 189 PRO n 1 190 LYS n 1 191 PRO n 1 192 LYS n 1 193 VAL n 1 194 TYR n 1 195 SER n 1 196 ALA n 1 197 ILE n 1 198 VAL n 1 199 LYS n 1 200 ILE n 1 201 LYS n 1 202 PRO n 1 203 ASN n 1 204 LYS n 1 205 GLY n 1 206 LYS n 1 207 TYR n 1 208 HIS n 1 209 ILE n 1 210 GLU n 1 211 ASN n 1 212 GLU n 1 213 ASN n 1 214 PHE n 1 215 PHE n 1 216 ASP n 1 217 ASP n 1 218 PHE n 1 219 LEU n 1 220 ARG n 1 221 ALA n 1 222 ILE n 1 223 PHE n 1 224 GLN n 1 225 HIS n 1 226 ARG n 1 227 ASN n 1 228 LYS n 1 229 SER n 1 230 VAL n 1 231 ARG n 1 232 LYS n 1 233 ALA n 1 234 LEU n 1 235 ILE n 1 236 ASP n 1 237 SER n 1 238 SER n 1 239 LYS n 1 240 GLU n 1 241 LEU n 1 242 ASN n 1 243 TYR n 1 244 ASN n 1 245 LYS n 1 246 ASP n 1 247 GLU n 1 248 MET n 1 249 LYS n 1 250 LYS n 1 251 ILE n 1 252 LEU n 1 253 GLU n 1 254 ASP n 1 255 PHE n 1 256 LEU n 1 257 ASN n 1 258 THR n 1 259 ASN n 1 260 SER n 1 261 GLU n 1 262 ILE n 1 263 LYS n 1 264 ASN n 1 265 LEU n 1 266 ILE n 1 267 ASN n 1 268 GLU n 1 269 LYS n 1 270 VAL n 1 271 PHE n 1 272 LYS n 1 273 LEU n 1 274 SER n 1 275 VAL n 1 276 LYS n 1 277 ASP n 1 278 ILE n 1 279 VAL n 1 280 ASN n 1 281 LEU n 1 282 SER n 1 283 ASN n 1 284 GLU n 1 285 PHE n 1 286 TYR n 1 287 ARG n 1 288 PHE n 1 289 LEU n 1 290 GLN n 1 291 ASN n 1 292 ARG n 1 293 GLY n 1 294 ARG n 1 295 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Methanococcus jannaschii' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Dim1, ksgA, MJ1029' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KSGA_METJA _struct_ref.pdbx_db_accession Q58435 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEI IWGDALKVDLNKLDFNKVVANLPYQISSPITFKLIKRGFDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVA KVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNS EIKNLINEKVFKLSVKDIVNLSNEFYRFLQNRGRL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GRY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 295 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q58435 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 275 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 275 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GRY MET A 1 ? UNP Q58435 ? ? 'expression tag' -19 1 1 3GRY GLY A 2 ? UNP Q58435 ? ? 'expression tag' -18 2 1 3GRY SER A 3 ? UNP Q58435 ? ? 'expression tag' -17 3 1 3GRY SER A 4 ? UNP Q58435 ? ? 'expression tag' -16 4 1 3GRY HIS A 5 ? UNP Q58435 ? ? 'expression tag' -15 5 1 3GRY HIS A 6 ? UNP Q58435 ? ? 'expression tag' -14 6 1 3GRY HIS A 7 ? UNP Q58435 ? ? 'expression tag' -13 7 1 3GRY HIS A 8 ? UNP Q58435 ? ? 'expression tag' -12 8 1 3GRY HIS A 9 ? UNP Q58435 ? ? 'expression tag' -11 9 1 3GRY HIS A 10 ? UNP Q58435 ? ? 'expression tag' -10 10 1 3GRY SER A 11 ? UNP Q58435 ? ? 'expression tag' -9 11 1 3GRY SER A 12 ? UNP Q58435 ? ? 'expression tag' -8 12 1 3GRY GLY A 13 ? UNP Q58435 ? ? 'expression tag' -7 13 1 3GRY LEU A 14 ? UNP Q58435 ? ? 'expression tag' -6 14 1 3GRY VAL A 15 ? UNP Q58435 ? ? 'expression tag' -5 15 1 3GRY PRO A 16 ? UNP Q58435 ? ? 'expression tag' -4 16 1 3GRY ARG A 17 ? UNP Q58435 ? ? 'expression tag' -3 17 1 3GRY GLY A 18 ? UNP Q58435 ? ? 'expression tag' -2 18 1 3GRY SER A 19 ? UNP Q58435 ? ? 'expression tag' -1 19 1 3GRY HIS A 20 ? UNP Q58435 ? ? 'expression tag' 0 20 1 3GRY ALA A 157 ? UNP Q58435 LYS 137 'engineered mutation' 137 21 1 3GRY ALA A 158 ? UNP Q58435 GLU 138 'engineered mutation' 138 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GRY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details 'PEG 8000 (14-16%), 25 MM MES, 50 MM NH2SO4, 7 MM MGCL2, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2008-11-24 _diffrn_detector.details 'Rigaku Varimax Confocal Optics' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'rigkau varimax confocal optics' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3GRY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 22.34 _reflns.d_resolution_high 2.20 _reflns.number_obs 14252 _reflns.number_all 16190 _reflns.percent_possible_obs 88 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.0 _reflns.B_iso_Wilson_estimate 56.2 _reflns.pdbx_redundancy 6.18 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 85.0 _reflns_shell.Rmerge_I_obs 0.363 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3. _reflns_shell.pdbx_redundancy 6.07 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1625 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GRY _refine.ls_number_reflns_obs 12810 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.18 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 87.98 _refine.ls_R_factor_obs 0.24328 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23746 _refine.ls_R_factor_R_free 0.29510 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1431 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.898 _refine.B_iso_mean 53.392 _refine.aniso_B[1][1] 0.03 _refine.aniso_B[2][2] -0.47 _refine.aniso_B[3][3] -0.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.83 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model '3FYD, Chain A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'Residual individual Isotropic B factors with TLS refinement' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.441 _refine.pdbx_overall_ESU_R_Free 0.296 _refine.overall_SU_ML 0.222 _refine.overall_SU_B 17.737 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3GRY _refine_analyze.Luzzati_coordinate_error_obs 0.362 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2105 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 2262 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 22.18 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 2185 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.139 1.989 ? 2953 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.289 5.000 ? 264 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.563 25.253 ? 99 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.968 15.000 ? 404 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.456 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.079 0.200 ? 336 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1609 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.468 2.000 ? 1325 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.933 5.000 ? 2140 'X-RAY DIFFRACTION' ? r_scbond_it 1.576 6.000 ? 860 'X-RAY DIFFRACTION' ? r_scangle_it 2.168 9.000 ? 813 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 914 _refine_ls_shell.R_factor_R_work 0.304 _refine_ls_shell.percent_reflns_obs 84.11 _refine_ls_shell.R_factor_R_free 0.331 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 102 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GRY _struct.title 'Crystal Structure of the complex between S-Adenosyl Methionine and Methanocaldococcus jannaschi Dim1.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GRY _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;DimethylAdenosine Transferase, Rossmann fold, Ribosomal Assembly S-Adenosyl-L-Methionine, RRNA Processing, RNA-Binding, Methyl Transferase, Methyltransferase, S-adenosyl-L-methionine, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 35 ? ALA A 46 ? ASP A 15 ALA A 26 1 ? 12 HELX_P HELX_P2 2 GLY A 62 ? ALA A 72 ? GLY A 42 ALA A 52 1 ? 11 HELX_P HELX_P3 3 ASP A 81 ? SER A 83 ? ASP A 61 SER A 63 5 ? 3 HELX_P HELX_P4 4 LEU A 84 ? GLU A 93 ? LEU A 64 GLU A 73 1 ? 10 HELX_P HELX_P5 5 ASP A 109 ? LEU A 113 ? ASP A 89 LEU A 93 5 ? 5 HELX_P HELX_P6 6 ILE A 126 ? GLY A 138 ? ILE A 106 GLY A 118 1 ? 13 HELX_P HELX_P7 7 TYR A 148 ? ALA A 156 ? TYR A 128 ALA A 136 1 ? 9 HELX_P HELX_P8 8 GLY A 164 ? SER A 172 ? GLY A 144 SER A 152 1 ? 9 HELX_P HELX_P9 9 PRO A 183 ? SER A 185 ? PRO A 163 SER A 165 5 ? 3 HELX_P HELX_P10 10 ASN A 211 ? PHE A 223 ? ASN A 191 PHE A 203 1 ? 13 HELX_P HELX_P11 11 SER A 229 ? SER A 237 ? SER A 209 SER A 217 1 ? 9 HELX_P HELX_P12 12 SER A 238 ? ASN A 242 ? SER A 218 ASN A 222 5 ? 5 HELX_P HELX_P13 13 ASN A 244 ? ASN A 257 ? ASN A 224 ASN A 237 1 ? 14 HELX_P HELX_P14 14 ASN A 259 ? ASN A 267 ? ASN A 239 ASN A 247 1 ? 9 HELX_P HELX_P15 15 LYS A 269 ? LEU A 273 ? LYS A 249 LEU A 253 5 ? 5 HELX_P HELX_P16 16 SER A 274 ? ASN A 291 ? SER A 254 ASN A 271 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 188 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 168 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 189 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 169 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.23 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 32 ? LEU A 33 ? PHE A 12 LEU A 13 A 2 PHE A 187 ? TYR A 188 ? PHE A 167 TYR A 168 B 1 ILE A 98 ? TRP A 102 ? ILE A 78 TRP A 82 B 2 LYS A 74 ? GLU A 79 ? LYS A 54 GLU A 59 B 3 VAL A 53 ? ILE A 57 ? VAL A 33 ILE A 37 B 4 LYS A 117 ? ASN A 121 ? LYS A 97 ASN A 101 B 5 LEU A 141 ? GLN A 147 ? LEU A 121 GLN A 127 B 6 SER A 195 ? PRO A 202 ? SER A 175 PRO A 182 B 7 ALA A 174 ? VAL A 182 ? ALA A 154 VAL A 162 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 32 ? N PHE A 12 O TYR A 188 ? O TYR A 168 B 1 2 O ILE A 101 ? O ILE A 81 N VAL A 77 ? N VAL A 57 B 2 3 O TYR A 76 ? O TYR A 56 N GLU A 56 ? N GLU A 36 B 3 4 N LEU A 55 ? N LEU A 35 O LYS A 117 ? O LYS A 97 B 4 5 N VAL A 118 ? N VAL A 98 O VAL A 143 ? O VAL A 123 B 5 6 N ALA A 142 ? N ALA A 122 O ILE A 200 ? O ILE A 180 B 6 7 O ILE A 197 ? O ILE A 177 N VAL A 179 ? N VAL A 159 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SAM 300 ? 16 'BINDING SITE FOR RESIDUE SAM A 300' AC2 Software A PO4 276 ? 3 'BINDING SITE FOR RESIDUE PO4 A 276' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 CYS A 31 ? CYS A 11 . ? 1_555 ? 2 AC1 16 LEU A 33 ? LEU A 13 . ? 1_555 ? 3 AC1 16 GLU A 56 ? GLU A 36 . ? 1_555 ? 4 AC1 16 GLY A 58 ? GLY A 38 . ? 1_555 ? 5 AC1 16 LEU A 59 ? LEU A 39 . ? 1_555 ? 6 AC1 16 GLY A 60 ? GLY A 40 . ? 1_555 ? 7 AC1 16 GLU A 79 ? GLU A 59 . ? 1_555 ? 8 AC1 16 ILE A 80 ? ILE A 60 . ? 1_555 ? 9 AC1 16 LEU A 84 ? LEU A 64 . ? 1_555 ? 10 AC1 16 GLY A 103 ? GLY A 83 . ? 1_555 ? 11 AC1 16 ASP A 104 ? ASP A 84 . ? 1_555 ? 12 AC1 16 ALA A 105 ? ALA A 85 . ? 1_555 ? 13 AC1 16 ASN A 121 ? ASN A 101 . ? 1_555 ? 14 AC1 16 PRO A 123 ? PRO A 103 . ? 1_555 ? 15 AC1 16 HOH D . ? HOH A 279 . ? 1_555 ? 16 AC1 16 HOH D . ? HOH A 399 . ? 1_555 ? 17 AC2 3 LYS A 73 ? LYS A 53 . ? 1_655 ? 18 AC2 3 SER A 128 ? SER A 108 . ? 1_555 ? 19 AC2 3 ARG A 153 ? ARG A 133 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GRY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GRY _atom_sites.fract_transf_matrix[1][1] 0.024711 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007959 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014921 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016904 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 ? ? ? A . n A 1 20 HIS 20 0 ? ? ? A . n A 1 21 MET 21 1 ? ? ? A . n A 1 22 PHE 22 2 ? ? ? A . n A 1 23 LYS 23 3 ? ? ? A . n A 1 24 PRO 24 4 ? ? ? A . n A 1 25 LYS 25 5 ? ? ? A . n A 1 26 LYS 26 6 ? ? ? A . n A 1 27 LYS 27 7 ? ? ? A . n A 1 28 LEU 28 8 ? ? ? A . n A 1 29 GLY 29 9 ? ? ? A . n A 1 30 GLN 30 10 10 GLN ALA A . n A 1 31 CYS 31 11 11 CYS CYS A . n A 1 32 PHE 32 12 12 PHE PHE A . n A 1 33 LEU 33 13 13 LEU LEU A . n A 1 34 ILE 34 14 14 ILE ILE A . n A 1 35 ASP 35 15 15 ASP ASP A . n A 1 36 LYS 36 16 16 LYS LYS A . n A 1 37 ASN 37 17 17 ASN ASN A . n A 1 38 PHE 38 18 18 PHE PHE A . n A 1 39 VAL 39 19 19 VAL VAL A . n A 1 40 ASN 40 20 20 ASN ASN A . n A 1 41 LYS 41 21 21 LYS LYS A . n A 1 42 ALA 42 22 22 ALA ALA A . n A 1 43 VAL 43 23 23 VAL VAL A . n A 1 44 GLU 44 24 24 GLU GLU A . n A 1 45 SER 45 25 25 SER SER A . n A 1 46 ALA 46 26 26 ALA ALA A . n A 1 47 ASN 47 27 27 ASN ASN A . n A 1 48 LEU 48 28 28 LEU LEU A . n A 1 49 THR 49 29 29 THR THR A . n A 1 50 LYS 50 30 30 LYS LYS A . n A 1 51 ASP 51 31 31 ASP ASP A . n A 1 52 ASP 52 32 32 ASP ASP A . n A 1 53 VAL 53 33 33 VAL VAL A . n A 1 54 VAL 54 34 34 VAL VAL A . n A 1 55 LEU 55 35 35 LEU LEU A . n A 1 56 GLU 56 36 36 GLU GLU A . n A 1 57 ILE 57 37 37 ILE ILE A . n A 1 58 GLY 58 38 38 GLY GLY A . n A 1 59 LEU 59 39 39 LEU LEU A . n A 1 60 GLY 60 40 40 GLY GLY A . n A 1 61 LYS 61 41 41 LYS LYS A . n A 1 62 GLY 62 42 42 GLY GLY A . n A 1 63 ILE 63 43 43 ILE ILE A . n A 1 64 LEU 64 44 44 LEU LEU A . n A 1 65 THR 65 45 45 THR THR A . n A 1 66 GLU 66 46 46 GLU GLU A . n A 1 67 GLU 67 47 47 GLU GLU A . n A 1 68 LEU 68 48 48 LEU LEU A . n A 1 69 ALA 69 49 49 ALA ALA A . n A 1 70 LYS 70 50 50 LYS LYS A . n A 1 71 ASN 71 51 51 ASN ASN A . n A 1 72 ALA 72 52 52 ALA ALA A . n A 1 73 LYS 73 53 53 LYS LYS A . n A 1 74 LYS 74 54 54 LYS LYS A . n A 1 75 VAL 75 55 55 VAL VAL A . n A 1 76 TYR 76 56 56 TYR TYR A . n A 1 77 VAL 77 57 57 VAL VAL A . n A 1 78 ILE 78 58 58 ILE ILE A . n A 1 79 GLU 79 59 59 GLU GLU A . n A 1 80 ILE 80 60 60 ILE ILE A . n A 1 81 ASP 81 61 61 ASP ASP A . n A 1 82 LYS 82 62 62 LYS LYS A . n A 1 83 SER 83 63 63 SER SER A . n A 1 84 LEU 84 64 64 LEU LEU A . n A 1 85 GLU 85 65 65 GLU GLU A . n A 1 86 PRO 86 66 66 PRO PRO A . n A 1 87 TYR 87 67 67 TYR TYR A . n A 1 88 ALA 88 68 68 ALA ALA A . n A 1 89 ASN 89 69 69 ASN ASN A . n A 1 90 LYS 90 70 70 LYS ALA A . n A 1 91 LEU 91 71 71 LEU LEU A . n A 1 92 LYS 92 72 72 LYS LYS A . n A 1 93 GLU 93 73 73 GLU GLU A . n A 1 94 LEU 94 74 74 LEU LEU A . n A 1 95 TYR 95 75 75 TYR TYR A . n A 1 96 ASN 96 76 76 ASN ASN A . n A 1 97 ASN 97 77 77 ASN ASN A . n A 1 98 ILE 98 78 78 ILE ILE A . n A 1 99 GLU 99 79 79 GLU GLU A . n A 1 100 ILE 100 80 80 ILE ILE A . n A 1 101 ILE 101 81 81 ILE ILE A . n A 1 102 TRP 102 82 82 TRP TRP A . n A 1 103 GLY 103 83 83 GLY GLY A . n A 1 104 ASP 104 84 84 ASP ASP A . n A 1 105 ALA 105 85 85 ALA ALA A . n A 1 106 LEU 106 86 86 LEU LEU A . n A 1 107 LYS 107 87 87 LYS LYS A . n A 1 108 VAL 108 88 88 VAL VAL A . n A 1 109 ASP 109 89 89 ASP ASP A . n A 1 110 LEU 110 90 90 LEU LEU A . n A 1 111 ASN 111 91 91 ASN ASN A . n A 1 112 LYS 112 92 92 LYS LYS A . n A 1 113 LEU 113 93 93 LEU LEU A . n A 1 114 ASP 114 94 94 ASP ASP A . n A 1 115 PHE 115 95 95 PHE PHE A . n A 1 116 ASN 116 96 96 ASN ASN A . n A 1 117 LYS 117 97 97 LYS LYS A . n A 1 118 VAL 118 98 98 VAL VAL A . n A 1 119 VAL 119 99 99 VAL VAL A . n A 1 120 ALA 120 100 100 ALA ALA A . n A 1 121 ASN 121 101 101 ASN ASN A . n A 1 122 LEU 122 102 102 LEU LEU A . n A 1 123 PRO 123 103 103 PRO PRO A . n A 1 124 TYR 124 104 104 TYR TYR A . n A 1 125 GLN 125 105 105 GLN ALA A . n A 1 126 ILE 126 106 106 ILE ILE A . n A 1 127 SER 127 107 107 SER SER A . n A 1 128 SER 128 108 108 SER SER A . n A 1 129 PRO 129 109 109 PRO PRO A . n A 1 130 ILE 130 110 110 ILE ILE A . n A 1 131 THR 131 111 111 THR THR A . n A 1 132 PHE 132 112 112 PHE PHE A . n A 1 133 LYS 133 113 113 LYS LYS A . n A 1 134 LEU 134 114 114 LEU LEU A . n A 1 135 ILE 135 115 115 ILE ILE A . n A 1 136 LYS 136 116 116 LYS LYS A . n A 1 137 ARG 137 117 117 ARG ARG A . n A 1 138 GLY 138 118 118 GLY GLY A . n A 1 139 PHE 139 119 119 PHE PHE A . n A 1 140 ASP 140 120 120 ASP ASP A . n A 1 141 LEU 141 121 121 LEU LEU A . n A 1 142 ALA 142 122 122 ALA ALA A . n A 1 143 VAL 143 123 123 VAL VAL A . n A 1 144 LEU 144 124 124 LEU LEU A . n A 1 145 MET 145 125 125 MET MET A . n A 1 146 TYR 146 126 126 TYR TYR A . n A 1 147 GLN 147 127 127 GLN GLN A . n A 1 148 TYR 148 128 128 TYR TYR A . n A 1 149 GLU 149 129 129 GLU GLU A . n A 1 150 PHE 150 130 130 PHE PHE A . n A 1 151 ALA 151 131 131 ALA ALA A . n A 1 152 LYS 152 132 132 LYS LYS A . n A 1 153 ARG 153 133 133 ARG ARG A . n A 1 154 MET 154 134 134 MET MET A . n A 1 155 VAL 155 135 135 VAL VAL A . n A 1 156 ALA 156 136 136 ALA ALA A . n A 1 157 ALA 157 137 137 ALA ALA A . n A 1 158 ALA 158 138 138 ALA ALA A . n A 1 159 GLY 159 139 139 GLY GLY A . n A 1 160 THR 160 140 140 THR THR A . n A 1 161 LYS 161 141 141 LYS LYS A . n A 1 162 ASP 162 142 142 ASP ASP A . n A 1 163 TYR 163 143 143 TYR TYR A . n A 1 164 GLY 164 144 144 GLY GLY A . n A 1 165 ARG 165 145 145 ARG ARG A . n A 1 166 LEU 166 146 146 LEU LEU A . n A 1 167 SER 167 147 147 SER SER A . n A 1 168 VAL 168 148 148 VAL VAL A . n A 1 169 ALA 169 149 149 ALA ALA A . n A 1 170 VAL 170 150 150 VAL VAL A . n A 1 171 GLN 171 151 151 GLN GLN A . n A 1 172 SER 172 152 152 SER SER A . n A 1 173 ARG 173 153 153 ARG ARG A . n A 1 174 ALA 174 154 154 ALA ALA A . n A 1 175 ASP 175 155 155 ASP ASP A . n A 1 176 VAL 176 156 156 VAL VAL A . n A 1 177 GLU 177 157 157 GLU GLU A . n A 1 178 ILE 178 158 158 ILE ILE A . n A 1 179 VAL 179 159 159 VAL VAL A . n A 1 180 ALA 180 160 160 ALA ALA A . n A 1 181 LYS 181 161 161 LYS LYS A . n A 1 182 VAL 182 162 162 VAL VAL A . n A 1 183 PRO 183 163 163 PRO PRO A . n A 1 184 PRO 184 164 164 PRO PRO A . n A 1 185 SER 185 165 165 SER SER A . n A 1 186 ALA 186 166 166 ALA ALA A . n A 1 187 PHE 187 167 167 PHE PHE A . n A 1 188 TYR 188 168 168 TYR TYR A . n A 1 189 PRO 189 169 169 PRO PRO A . n A 1 190 LYS 190 170 170 LYS LYS A . n A 1 191 PRO 191 171 171 PRO PRO A . n A 1 192 LYS 192 172 172 LYS ALA A . n A 1 193 VAL 193 173 173 VAL VAL A . n A 1 194 TYR 194 174 174 TYR TYR A . n A 1 195 SER 195 175 175 SER SER A . n A 1 196 ALA 196 176 176 ALA ALA A . n A 1 197 ILE 197 177 177 ILE ILE A . n A 1 198 VAL 198 178 178 VAL VAL A . n A 1 199 LYS 199 179 179 LYS LYS A . n A 1 200 ILE 200 180 180 ILE ILE A . n A 1 201 LYS 201 181 181 LYS LYS A . n A 1 202 PRO 202 182 182 PRO PRO A . n A 1 203 ASN 203 183 183 ASN ASN A . n A 1 204 LYS 204 184 184 LYS ALA A . n A 1 205 GLY 205 185 185 GLY GLY A . n A 1 206 LYS 206 186 186 LYS ALA A . n A 1 207 TYR 207 187 187 TYR TYR A . n A 1 208 HIS 208 188 188 HIS ALA A . n A 1 209 ILE 209 189 189 ILE ILE A . n A 1 210 GLU 210 190 190 GLU GLU A . n A 1 211 ASN 211 191 191 ASN ASN A . n A 1 212 GLU 212 192 192 GLU GLU A . n A 1 213 ASN 213 193 193 ASN ASN A . n A 1 214 PHE 214 194 194 PHE PHE A . n A 1 215 PHE 215 195 195 PHE PHE A . n A 1 216 ASP 216 196 196 ASP ASP A . n A 1 217 ASP 217 197 197 ASP ASP A . n A 1 218 PHE 218 198 198 PHE PHE A . n A 1 219 LEU 219 199 199 LEU LEU A . n A 1 220 ARG 220 200 200 ARG ARG A . n A 1 221 ALA 221 201 201 ALA ALA A . n A 1 222 ILE 222 202 202 ILE ILE A . n A 1 223 PHE 223 203 203 PHE PHE A . n A 1 224 GLN 224 204 204 GLN GLN A . n A 1 225 HIS 225 205 205 HIS HIS A . n A 1 226 ARG 226 206 206 ARG ARG A . n A 1 227 ASN 227 207 207 ASN ASN A . n A 1 228 LYS 228 208 208 LYS LYS A . n A 1 229 SER 229 209 209 SER SER A . n A 1 230 VAL 230 210 210 VAL VAL A . n A 1 231 ARG 231 211 211 ARG ARG A . n A 1 232 LYS 232 212 212 LYS LYS A . n A 1 233 ALA 233 213 213 ALA ALA A . n A 1 234 LEU 234 214 214 LEU LEU A . n A 1 235 ILE 235 215 215 ILE ILE A . n A 1 236 ASP 236 216 216 ASP ASP A . n A 1 237 SER 237 217 217 SER SER A . n A 1 238 SER 238 218 218 SER SER A . n A 1 239 LYS 239 219 219 LYS LYS A . n A 1 240 GLU 240 220 220 GLU GLU A . n A 1 241 LEU 241 221 221 LEU LEU A . n A 1 242 ASN 242 222 222 ASN ASN A . n A 1 243 TYR 243 223 223 TYR TYR A . n A 1 244 ASN 244 224 224 ASN ASN A . n A 1 245 LYS 245 225 225 LYS ALA A . n A 1 246 ASP 246 226 226 ASP ASP A . n A 1 247 GLU 247 227 227 GLU GLU A . n A 1 248 MET 248 228 228 MET MET A . n A 1 249 LYS 249 229 229 LYS LYS A . n A 1 250 LYS 250 230 230 LYS LYS A . n A 1 251 ILE 251 231 231 ILE ILE A . n A 1 252 LEU 252 232 232 LEU LEU A . n A 1 253 GLU 253 233 233 GLU GLU A . n A 1 254 ASP 254 234 234 ASP ASP A . n A 1 255 PHE 255 235 235 PHE PHE A . n A 1 256 LEU 256 236 236 LEU LEU A . n A 1 257 ASN 257 237 237 ASN ASN A . n A 1 258 THR 258 238 238 THR THR A . n A 1 259 ASN 259 239 239 ASN ASN A . n A 1 260 SER 260 240 240 SER SER A . n A 1 261 GLU 261 241 241 GLU GLU A . n A 1 262 ILE 262 242 242 ILE ILE A . n A 1 263 LYS 263 243 243 LYS LYS A . n A 1 264 ASN 264 244 244 ASN ASN A . n A 1 265 LEU 265 245 245 LEU LEU A . n A 1 266 ILE 266 246 246 ILE ILE A . n A 1 267 ASN 267 247 247 ASN ASN A . n A 1 268 GLU 268 248 248 GLU GLU A . n A 1 269 LYS 269 249 249 LYS LYS A . n A 1 270 VAL 270 250 250 VAL VAL A . n A 1 271 PHE 271 251 251 PHE PHE A . n A 1 272 LYS 272 252 252 LYS LYS A . n A 1 273 LEU 273 253 253 LEU LEU A . n A 1 274 SER 274 254 254 SER SER A . n A 1 275 VAL 275 255 255 VAL VAL A . n A 1 276 LYS 276 256 256 LYS LYS A . n A 1 277 ASP 277 257 257 ASP ASP A . n A 1 278 ILE 278 258 258 ILE ILE A . n A 1 279 VAL 279 259 259 VAL VAL A . n A 1 280 ASN 280 260 260 ASN ASN A . n A 1 281 LEU 281 261 261 LEU LEU A . n A 1 282 SER 282 262 262 SER SER A . n A 1 283 ASN 283 263 263 ASN ASN A . n A 1 284 GLU 284 264 264 GLU GLU A . n A 1 285 PHE 285 265 265 PHE PHE A . n A 1 286 TYR 286 266 266 TYR TYR A . n A 1 287 ARG 287 267 267 ARG ARG A . n A 1 288 PHE 288 268 268 PHE PHE A . n A 1 289 LEU 289 269 269 LEU LEU A . n A 1 290 GLN 290 270 270 GLN GLN A . n A 1 291 ASN 291 271 271 ASN ASN A . n A 1 292 ARG 292 272 272 ARG ARG A . n A 1 293 GLY 293 273 ? ? ? A . n A 1 294 ARG 294 274 ? ? ? A . n A 1 295 LEU 295 275 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 300 300 SAM SAM A . C 3 PO4 1 276 1 PO4 PO4 A . D 4 HOH 1 277 2 HOH HOH A . D 4 HOH 2 278 3 HOH HOH A . D 4 HOH 3 279 4 HOH HOH A . D 4 HOH 4 280 5 HOH HOH A . D 4 HOH 5 281 6 HOH HOH A . D 4 HOH 6 282 7 HOH HOH A . D 4 HOH 7 283 8 HOH HOH A . D 4 HOH 8 284 9 HOH HOH A . D 4 HOH 9 285 10 HOH HOH A . D 4 HOH 10 286 11 HOH HOH A . D 4 HOH 11 287 13 HOH HOH A . D 4 HOH 12 288 15 HOH HOH A . D 4 HOH 13 289 16 HOH HOH A . D 4 HOH 14 290 17 HOH HOH A . D 4 HOH 15 291 18 HOH HOH A . D 4 HOH 16 292 19 HOH HOH A . D 4 HOH 17 293 22 HOH HOH A . D 4 HOH 18 294 23 HOH HOH A . D 4 HOH 19 295 24 HOH HOH A . D 4 HOH 20 296 25 HOH HOH A . D 4 HOH 21 297 26 HOH HOH A . D 4 HOH 22 298 27 HOH HOH A . D 4 HOH 23 299 28 HOH HOH A . D 4 HOH 24 301 36 HOH HOH A . D 4 HOH 25 302 40 HOH HOH A . D 4 HOH 26 303 41 HOH HOH A . D 4 HOH 27 304 42 HOH HOH A . D 4 HOH 28 305 44 HOH HOH A . D 4 HOH 29 306 45 HOH HOH A . D 4 HOH 30 307 46 HOH HOH A . D 4 HOH 31 308 47 HOH HOH A . D 4 HOH 32 309 48 HOH HOH A . D 4 HOH 33 310 49 HOH HOH A . D 4 HOH 34 311 50 HOH HOH A . D 4 HOH 35 312 51 HOH HOH A . D 4 HOH 36 313 52 HOH HOH A . D 4 HOH 37 314 53 HOH HOH A . D 4 HOH 38 315 54 HOH HOH A . D 4 HOH 39 316 55 HOH HOH A . D 4 HOH 40 317 56 HOH HOH A . D 4 HOH 41 318 57 HOH HOH A . D 4 HOH 42 319 58 HOH HOH A . D 4 HOH 43 320 59 HOH HOH A . D 4 HOH 44 321 60 HOH HOH A . D 4 HOH 45 322 62 HOH HOH A . D 4 HOH 46 323 63 HOH HOH A . D 4 HOH 47 324 64 HOH HOH A . D 4 HOH 48 325 65 HOH HOH A . D 4 HOH 49 326 67 HOH HOH A . D 4 HOH 50 327 68 HOH HOH A . D 4 HOH 51 328 70 HOH HOH A . D 4 HOH 52 329 71 HOH HOH A . D 4 HOH 53 330 72 HOH HOH A . D 4 HOH 54 331 73 HOH HOH A . D 4 HOH 55 332 74 HOH HOH A . D 4 HOH 56 333 76 HOH HOH A . D 4 HOH 57 334 77 HOH HOH A . D 4 HOH 58 335 78 HOH HOH A . D 4 HOH 59 336 80 HOH HOH A . D 4 HOH 60 337 81 HOH HOH A . D 4 HOH 61 338 82 HOH HOH A . D 4 HOH 62 339 83 HOH HOH A . D 4 HOH 63 340 84 HOH HOH A . D 4 HOH 64 341 85 HOH HOH A . D 4 HOH 65 342 87 HOH HOH A . D 4 HOH 66 343 88 HOH HOH A . D 4 HOH 67 344 89 HOH HOH A . D 4 HOH 68 345 90 HOH HOH A . D 4 HOH 69 346 92 HOH HOH A . D 4 HOH 70 347 93 HOH HOH A . D 4 HOH 71 348 94 HOH HOH A . D 4 HOH 72 349 95 HOH HOH A . D 4 HOH 73 350 96 HOH HOH A . D 4 HOH 74 351 97 HOH HOH A . D 4 HOH 75 352 98 HOH HOH A . D 4 HOH 76 353 99 HOH HOH A . D 4 HOH 77 354 100 HOH HOH A . D 4 HOH 78 355 101 HOH HOH A . D 4 HOH 79 356 102 HOH HOH A . D 4 HOH 80 357 103 HOH HOH A . D 4 HOH 81 358 105 HOH HOH A . D 4 HOH 82 359 107 HOH HOH A . D 4 HOH 83 360 108 HOH HOH A . D 4 HOH 84 361 109 HOH HOH A . D 4 HOH 85 362 110 HOH HOH A . D 4 HOH 86 363 111 HOH HOH A . D 4 HOH 87 364 112 HOH HOH A . D 4 HOH 88 365 113 HOH HOH A . D 4 HOH 89 366 114 HOH HOH A . D 4 HOH 90 367 115 HOH HOH A . D 4 HOH 91 368 116 HOH HOH A . D 4 HOH 92 369 117 HOH HOH A . D 4 HOH 93 370 118 HOH HOH A . D 4 HOH 94 371 119 HOH HOH A . D 4 HOH 95 372 120 HOH HOH A . D 4 HOH 96 373 122 HOH HOH A . D 4 HOH 97 374 124 HOH HOH A . D 4 HOH 98 375 126 HOH HOH A . D 4 HOH 99 376 128 HOH HOH A . D 4 HOH 100 377 129 HOH HOH A . D 4 HOH 101 378 131 HOH HOH A . D 4 HOH 102 379 132 HOH HOH A . D 4 HOH 103 380 134 HOH HOH A . D 4 HOH 104 381 135 HOH HOH A . D 4 HOH 105 382 136 HOH HOH A . D 4 HOH 106 383 137 HOH HOH A . D 4 HOH 107 384 138 HOH HOH A . D 4 HOH 108 385 140 HOH HOH A . D 4 HOH 109 386 141 HOH HOH A . D 4 HOH 110 387 143 HOH HOH A . D 4 HOH 111 388 144 HOH HOH A . D 4 HOH 112 389 145 HOH HOH A . D 4 HOH 113 390 147 HOH HOH A . D 4 HOH 114 391 150 HOH HOH A . D 4 HOH 115 392 151 HOH HOH A . D 4 HOH 116 393 152 HOH HOH A . D 4 HOH 117 394 153 HOH HOH A . D 4 HOH 118 395 154 HOH HOH A . D 4 HOH 119 396 155 HOH HOH A . D 4 HOH 120 397 156 HOH HOH A . D 4 HOH 121 398 157 HOH HOH A . D 4 HOH 122 399 158 HOH HOH A . D 4 HOH 123 400 159 HOH HOH A . D 4 HOH 124 401 160 HOH HOH A . D 4 HOH 125 402 161 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-11-12 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 18.0155 18.7275 22.3863 0.0173 0.0170 0.0456 -0.0044 0.0002 0.0020 0.7950 0.3891 0.4722 -0.0883 0.1386 0.0086 -0.0049 -0.0103 0.0152 0.1013 0.0242 -0.0050 -0.0648 0.0022 -0.0160 'X-RAY DIFFRACTION' 2 ? refined 41.3446 21.5168 47.1513 0.0280 0.0233 0.0544 0.0021 -0.0069 0.0056 0.6857 0.5025 1.0756 0.2718 0.1339 0.2618 0.0123 -0.0226 0.0103 -0.1176 0.0042 0.0223 0.0898 -0.0293 -0.0002 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 11 A 180 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 181 A 271 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.5.0088 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 30 ? ? -67.07 4.87 2 1 HIS A 188 ? ? 51.88 90.25 3 1 ASN A 239 ? ? 175.44 158.29 4 1 ASN A 271 ? ? -74.26 24.14 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 10 ? CG ? A GLN 30 CG 2 1 Y 1 A GLN 10 ? CD ? A GLN 30 CD 3 1 Y 1 A GLN 10 ? OE1 ? A GLN 30 OE1 4 1 Y 1 A GLN 10 ? NE2 ? A GLN 30 NE2 5 1 Y 1 A LYS 70 ? CG ? A LYS 90 CG 6 1 Y 1 A LYS 70 ? CD ? A LYS 90 CD 7 1 Y 1 A LYS 70 ? CE ? A LYS 90 CE 8 1 Y 1 A LYS 70 ? NZ ? A LYS 90 NZ 9 1 Y 1 A GLN 105 ? CG ? A GLN 125 CG 10 1 Y 1 A GLN 105 ? CD ? A GLN 125 CD 11 1 Y 1 A GLN 105 ? OE1 ? A GLN 125 OE1 12 1 Y 1 A GLN 105 ? NE2 ? A GLN 125 NE2 13 1 Y 1 A LYS 172 ? CG ? A LYS 192 CG 14 1 Y 1 A LYS 172 ? CD ? A LYS 192 CD 15 1 Y 1 A LYS 172 ? CE ? A LYS 192 CE 16 1 Y 1 A LYS 172 ? NZ ? A LYS 192 NZ 17 1 Y 1 A LYS 184 ? CG ? A LYS 204 CG 18 1 Y 1 A LYS 184 ? CD ? A LYS 204 CD 19 1 Y 1 A LYS 184 ? CE ? A LYS 204 CE 20 1 Y 1 A LYS 184 ? NZ ? A LYS 204 NZ 21 1 Y 1 A LYS 186 ? CG ? A LYS 206 CG 22 1 Y 1 A LYS 186 ? CD ? A LYS 206 CD 23 1 Y 1 A LYS 186 ? CE ? A LYS 206 CE 24 1 Y 1 A LYS 186 ? NZ ? A LYS 206 NZ 25 1 Y 1 A HIS 188 ? CG ? A HIS 208 CG 26 1 Y 1 A HIS 188 ? ND1 ? A HIS 208 ND1 27 1 Y 1 A HIS 188 ? CD2 ? A HIS 208 CD2 28 1 Y 1 A HIS 188 ? CE1 ? A HIS 208 CE1 29 1 Y 1 A HIS 188 ? NE2 ? A HIS 208 NE2 30 1 Y 1 A LYS 225 ? CG ? A LYS 245 CG 31 1 Y 1 A LYS 225 ? CD ? A LYS 245 CD 32 1 Y 1 A LYS 225 ? CE ? A LYS 245 CE 33 1 Y 1 A LYS 225 ? NZ ? A LYS 245 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 19 1 Y 1 A SER -1 ? A SER 19 20 1 Y 1 A HIS 0 ? A HIS 20 21 1 Y 1 A MET 1 ? A MET 21 22 1 Y 1 A PHE 2 ? A PHE 22 23 1 Y 1 A LYS 3 ? A LYS 23 24 1 Y 1 A PRO 4 ? A PRO 24 25 1 Y 1 A LYS 5 ? A LYS 25 26 1 Y 1 A LYS 6 ? A LYS 26 27 1 Y 1 A LYS 7 ? A LYS 27 28 1 Y 1 A LEU 8 ? A LEU 28 29 1 Y 1 A GLY 9 ? A GLY 29 30 1 Y 1 A GLY 273 ? A GLY 293 31 1 Y 1 A ARG 274 ? A ARG 294 32 1 Y 1 A LEU 275 ? A LEU 295 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PO4 P P N N 273 PO4 O1 O N N 274 PO4 O2 O N N 275 PO4 O3 O N N 276 PO4 O4 O N N 277 PRO N N N N 278 PRO CA C N S 279 PRO C C N N 280 PRO O O N N 281 PRO CB C N N 282 PRO CG C N N 283 PRO CD C N N 284 PRO OXT O N N 285 PRO H H N N 286 PRO HA H N N 287 PRO HB2 H N N 288 PRO HB3 H N N 289 PRO HG2 H N N 290 PRO HG3 H N N 291 PRO HD2 H N N 292 PRO HD3 H N N 293 PRO HXT H N N 294 SAM N N N N 295 SAM CA C N S 296 SAM C C N N 297 SAM O O N N 298 SAM OXT O N N 299 SAM CB C N N 300 SAM CG C N N 301 SAM SD S N S 302 SAM CE C N N 303 SAM "C5'" C N N 304 SAM "C4'" C N S 305 SAM "O4'" O N N 306 SAM "C3'" C N S 307 SAM "O3'" O N N 308 SAM "C2'" C N R 309 SAM "O2'" O N N 310 SAM "C1'" C N R 311 SAM N9 N Y N 312 SAM C8 C Y N 313 SAM N7 N Y N 314 SAM C5 C Y N 315 SAM C6 C Y N 316 SAM N6 N N N 317 SAM N1 N Y N 318 SAM C2 C Y N 319 SAM N3 N Y N 320 SAM C4 C Y N 321 SAM HN1 H N N 322 SAM HN2 H N N 323 SAM HA H N N 324 SAM HB1 H N N 325 SAM HB2 H N N 326 SAM HG1 H N N 327 SAM HG2 H N N 328 SAM HE1 H N N 329 SAM HE2 H N N 330 SAM HE3 H N N 331 SAM "H5'1" H N N 332 SAM "H5'2" H N N 333 SAM "H4'" H N N 334 SAM "H3'" H N N 335 SAM "HO3'" H N N 336 SAM "H2'" H N N 337 SAM "HO2'" H N N 338 SAM "H1'" H N N 339 SAM H8 H N N 340 SAM HN61 H N N 341 SAM HN62 H N N 342 SAM H2 H N N 343 SER N N N N 344 SER CA C N S 345 SER C C N N 346 SER O O N N 347 SER CB C N N 348 SER OG O N N 349 SER OXT O N N 350 SER H H N N 351 SER H2 H N N 352 SER HA H N N 353 SER HB2 H N N 354 SER HB3 H N N 355 SER HG H N N 356 SER HXT H N N 357 THR N N N N 358 THR CA C N S 359 THR C C N N 360 THR O O N N 361 THR CB C N R 362 THR OG1 O N N 363 THR CG2 C N N 364 THR OXT O N N 365 THR H H N N 366 THR H2 H N N 367 THR HA H N N 368 THR HB H N N 369 THR HG1 H N N 370 THR HG21 H N N 371 THR HG22 H N N 372 THR HG23 H N N 373 THR HXT H N N 374 TRP N N N N 375 TRP CA C N S 376 TRP C C N N 377 TRP O O N N 378 TRP CB C N N 379 TRP CG C Y N 380 TRP CD1 C Y N 381 TRP CD2 C Y N 382 TRP NE1 N Y N 383 TRP CE2 C Y N 384 TRP CE3 C Y N 385 TRP CZ2 C Y N 386 TRP CZ3 C Y N 387 TRP CH2 C Y N 388 TRP OXT O N N 389 TRP H H N N 390 TRP H2 H N N 391 TRP HA H N N 392 TRP HB2 H N N 393 TRP HB3 H N N 394 TRP HD1 H N N 395 TRP HE1 H N N 396 TRP HE3 H N N 397 TRP HZ2 H N N 398 TRP HZ3 H N N 399 TRP HH2 H N N 400 TRP HXT H N N 401 TYR N N N N 402 TYR CA C N S 403 TYR C C N N 404 TYR O O N N 405 TYR CB C N N 406 TYR CG C Y N 407 TYR CD1 C Y N 408 TYR CD2 C Y N 409 TYR CE1 C Y N 410 TYR CE2 C Y N 411 TYR CZ C Y N 412 TYR OH O N N 413 TYR OXT O N N 414 TYR H H N N 415 TYR H2 H N N 416 TYR HA H N N 417 TYR HB2 H N N 418 TYR HB3 H N N 419 TYR HD1 H N N 420 TYR HD2 H N N 421 TYR HE1 H N N 422 TYR HE2 H N N 423 TYR HH H N N 424 TYR HXT H N N 425 VAL N N N N 426 VAL CA C N S 427 VAL C C N N 428 VAL O O N N 429 VAL CB C N N 430 VAL CG1 C N N 431 VAL CG2 C N N 432 VAL OXT O N N 433 VAL H H N N 434 VAL H2 H N N 435 VAL HA H N N 436 VAL HB H N N 437 VAL HG11 H N N 438 VAL HG12 H N N 439 VAL HG13 H N N 440 VAL HG21 H N N 441 VAL HG22 H N N 442 VAL HG23 H N N 443 VAL HXT H N N 444 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PO4 P O1 doub N N 260 PO4 P O2 sing N N 261 PO4 P O3 sing N N 262 PO4 P O4 sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SAM N CA sing N N 281 SAM N HN1 sing N N 282 SAM N HN2 sing N N 283 SAM CA C sing N N 284 SAM CA CB sing N N 285 SAM CA HA sing N N 286 SAM C O doub N N 287 SAM C OXT sing N N 288 SAM CB CG sing N N 289 SAM CB HB1 sing N N 290 SAM CB HB2 sing N N 291 SAM CG SD sing N N 292 SAM CG HG1 sing N N 293 SAM CG HG2 sing N N 294 SAM SD CE sing N N 295 SAM SD "C5'" sing N N 296 SAM CE HE1 sing N N 297 SAM CE HE2 sing N N 298 SAM CE HE3 sing N N 299 SAM "C5'" "C4'" sing N N 300 SAM "C5'" "H5'1" sing N N 301 SAM "C5'" "H5'2" sing N N 302 SAM "C4'" "O4'" sing N N 303 SAM "C4'" "C3'" sing N N 304 SAM "C4'" "H4'" sing N N 305 SAM "O4'" "C1'" sing N N 306 SAM "C3'" "O3'" sing N N 307 SAM "C3'" "C2'" sing N N 308 SAM "C3'" "H3'" sing N N 309 SAM "O3'" "HO3'" sing N N 310 SAM "C2'" "O2'" sing N N 311 SAM "C2'" "C1'" sing N N 312 SAM "C2'" "H2'" sing N N 313 SAM "O2'" "HO2'" sing N N 314 SAM "C1'" N9 sing N N 315 SAM "C1'" "H1'" sing N N 316 SAM N9 C8 sing Y N 317 SAM N9 C4 sing Y N 318 SAM C8 N7 doub Y N 319 SAM C8 H8 sing N N 320 SAM N7 C5 sing Y N 321 SAM C5 C6 sing Y N 322 SAM C5 C4 doub Y N 323 SAM C6 N6 sing N N 324 SAM C6 N1 doub Y N 325 SAM N6 HN61 sing N N 326 SAM N6 HN62 sing N N 327 SAM N1 C2 sing Y N 328 SAM C2 N3 doub Y N 329 SAM C2 H2 sing N N 330 SAM N3 C4 sing Y N 331 SER N CA sing N N 332 SER N H sing N N 333 SER N H2 sing N N 334 SER CA C sing N N 335 SER CA CB sing N N 336 SER CA HA sing N N 337 SER C O doub N N 338 SER C OXT sing N N 339 SER CB OG sing N N 340 SER CB HB2 sing N N 341 SER CB HB3 sing N N 342 SER OG HG sing N N 343 SER OXT HXT sing N N 344 THR N CA sing N N 345 THR N H sing N N 346 THR N H2 sing N N 347 THR CA C sing N N 348 THR CA CB sing N N 349 THR CA HA sing N N 350 THR C O doub N N 351 THR C OXT sing N N 352 THR CB OG1 sing N N 353 THR CB CG2 sing N N 354 THR CB HB sing N N 355 THR OG1 HG1 sing N N 356 THR CG2 HG21 sing N N 357 THR CG2 HG22 sing N N 358 THR CG2 HG23 sing N N 359 THR OXT HXT sing N N 360 TRP N CA sing N N 361 TRP N H sing N N 362 TRP N H2 sing N N 363 TRP CA C sing N N 364 TRP CA CB sing N N 365 TRP CA HA sing N N 366 TRP C O doub N N 367 TRP C OXT sing N N 368 TRP CB CG sing N N 369 TRP CB HB2 sing N N 370 TRP CB HB3 sing N N 371 TRP CG CD1 doub Y N 372 TRP CG CD2 sing Y N 373 TRP CD1 NE1 sing Y N 374 TRP CD1 HD1 sing N N 375 TRP CD2 CE2 doub Y N 376 TRP CD2 CE3 sing Y N 377 TRP NE1 CE2 sing Y N 378 TRP NE1 HE1 sing N N 379 TRP CE2 CZ2 sing Y N 380 TRP CE3 CZ3 doub Y N 381 TRP CE3 HE3 sing N N 382 TRP CZ2 CH2 doub Y N 383 TRP CZ2 HZ2 sing N N 384 TRP CZ3 CH2 sing Y N 385 TRP CZ3 HZ3 sing N N 386 TRP CH2 HH2 sing N N 387 TRP OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 VAL N CA sing N N 413 VAL N H sing N N 414 VAL N H2 sing N N 415 VAL CA C sing N N 416 VAL CA CB sing N N 417 VAL CA HA sing N N 418 VAL C O doub N N 419 VAL C OXT sing N N 420 VAL CB CG1 sing N N 421 VAL CB CG2 sing N N 422 VAL CB HB sing N N 423 VAL CG1 HG11 sing N N 424 VAL CG1 HG12 sing N N 425 VAL CG1 HG13 sing N N 426 VAL CG2 HG21 sing N N 427 VAL CG2 HG22 sing N N 428 VAL CG2 HG23 sing N N 429 VAL OXT HXT sing N N 430 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 'PHOSPHATE ION' PO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FYD _pdbx_initial_refinement_model.details '3FYD, Chain A' #