HEADER PROTEIN BINDING 01-APR-09 3GWR TITLE CRYSTAL STRUCTURE OF PUTATIVE CALCIUM/CALMODULIN-DEPENDENT PROTEIN TITLE 2 KINASE TYPE II ASSOCIATION DOMAIN (YP_315894.1) FROM THIOBACILLUS TITLE 3 DENITRIFICANS ATCC 25259 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE COMPND 3 II ASSOCIATION DOMAIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOBACILLUS DENITRIFICANS ATCC 25259; SOURCE 3 ORGANISM_TAXID: 292415; SOURCE 4 ATCC: 25259; SOURCE 5 GENE: TBD_2136, YP_315894.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_315894.1, PUTATIVE CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KEYWDS 2 TYPE II ASSOCIATION DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 TRANSFERASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3GWR 1 REMARK SEQADV REVDAT 4 24-JUL-19 3GWR 1 REMARK LINK REVDAT 3 01-NOV-17 3GWR 1 REMARK REVDAT 2 13-JUL-11 3GWR 1 VERSN REVDAT 1 14-APR-09 3GWR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE CALCIUM/CALMODULIN-DEPENDENT JRNL TITL 2 PROTEIN KINASE TYPE II ASSOCIATION DOMAIN (YP_315894.1) FROM JRNL TITL 3 THIOBACILLUS DENITRIFICANS ATCC 25259 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 22693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1177 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : -1.23000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.881 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2125 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1442 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2885 ; 1.588 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3476 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 3.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;32.147 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;12.083 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.712 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2393 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 466 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 383 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1512 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 948 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1148 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.074 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1347 ; 1.496 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 510 ; 0.277 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2080 ; 2.337 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 893 ; 3.802 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 797 ; 5.263 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 34 6 REMARK 3 1 B 3 B 34 6 REMARK 3 2 A 38 A 94 6 REMARK 3 2 B 38 B 94 6 REMARK 3 3 A 99 A 128 6 REMARK 3 3 B 99 B 128 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1547 ; 0.340 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1547 ; 1.890 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8220 40.9050 17.9010 REMARK 3 T TENSOR REMARK 3 T11: -0.0945 T22: -0.0115 REMARK 3 T33: -0.0474 T12: -0.0030 REMARK 3 T13: -0.0049 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 1.0558 L22: 2.9156 REMARK 3 L33: 1.4222 L12: -0.1080 REMARK 3 L13: -0.1900 L23: 1.0491 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: -0.2392 S13: 0.2427 REMARK 3 S21: 0.0004 S22: 0.0448 S23: -0.1765 REMARK 3 S31: -0.1471 S32: 0.0829 S33: -0.1107 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3380 22.4070 11.6130 REMARK 3 T TENSOR REMARK 3 T11: -0.1309 T22: -0.0889 REMARK 3 T33: -0.1075 T12: -0.0008 REMARK 3 T13: -0.0063 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.2161 L22: 1.5750 REMARK 3 L33: 1.3657 L12: 0.5123 REMARK 3 L13: -0.3161 L23: -0.0656 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.1769 S13: -0.0760 REMARK 3 S21: 0.0079 S22: -0.0102 S23: 0.1171 REMARK 3 S31: 0.1085 S32: -0.0481 S33: -0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. PG4 REMARK 3 MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE MODELED. 5. REMARK 3 AN UNKNOWN LIGAND (UNL) RESEMBLING BENZOIC ACID OR NITROBENZENE REMARK 3 IS MODELED NEAR RESIDUE HIS 122 IN BOTH CHAINS. 6. LOOP REGION REMARK 3 RESIDUES 94-98 ARE DISORDRED AND HAVE POOR DENSITY SUPPORT. REMARK 4 REMARK 4 3GWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97966,0.97951 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.892 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4F, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.72250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.12950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.82750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.12950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.72250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.82750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 VAL A 129 REMARK 465 GLY A 130 REMARK 465 ALA A 131 REMARK 465 LYS A 132 REMARK 465 ALA A 133 REMARK 465 GLY A 134 REMARK 465 ALA A 135 REMARK 465 ASP A 136 REMARK 465 THR A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 VAL A 140 REMARK 465 VAL A 141 REMARK 465 PHE A 142 REMARK 465 HIS A 143 REMARK 465 GLY B 0 REMARK 465 VAL B 129 REMARK 465 GLY B 130 REMARK 465 ALA B 131 REMARK 465 LYS B 132 REMARK 465 ALA B 133 REMARK 465 GLY B 134 REMARK 465 ALA B 135 REMARK 465 ASP B 136 REMARK 465 THR B 137 REMARK 465 PRO B 138 REMARK 465 PRO B 139 REMARK 465 VAL B 140 REMARK 465 VAL B 141 REMARK 465 PHE B 142 REMARK 465 HIS B 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 34 NE CZ NH1 NH2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 MSE B 1 SE CE REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 128 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 34 49.06 -90.87 REMARK 500 THR A 98 -79.77 -66.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 144 REMARK 610 PG4 A 145 REMARK 610 PG4 B 144 REMARK 610 PG4 B 145 REMARK 610 PG4 B 146 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396994 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THIS CONSTRUCT (WITH MUTATION E14D) WAS EXPRESSED WITH A REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3GWR A 1 143 UNP Q3SH04 Q3SH04_THIDA 1 143 DBREF 3GWR B 1 143 UNP Q3SH04 Q3SH04_THIDA 1 143 SEQADV 3GWR GLY A 0 UNP Q3SH04 EXPRESSION TAG SEQADV 3GWR ASP A 14 UNP Q3SH04 GLU 14 SEE REMARK 999 SEQADV 3GWR GLY B 0 UNP Q3SH04 EXPRESSION TAG SEQADV 3GWR ASP B 14 UNP Q3SH04 GLU 14 SEE REMARK 999 SEQRES 1 A 144 GLY MSE SER GLU PRO VAL PHE PRO THR PRO GLU ALA ALA SEQRES 2 A 144 GLU ASP ALA PHE TYR ALA ALA PHE GLU ALA ARG SER LEU SEQRES 3 A 144 ASP ASP MSE MSE ALA VAL TRP ALA ARG ASP ASP HIS VAL SEQRES 4 A 144 ALA CYS ILE HIS PRO LEU ALA ALA PRO LEU ASN GLY ARG SEQRES 5 A 144 ALA ALA VAL ALA ALA GLY TRP ARG SER MSE PHE GLY ALA SEQRES 6 A 144 ALA GLY ARG PHE ARG LEU GLN VAL LYS ALA VAL HIS GLU SEQRES 7 A 144 ILE ARG GLN ALA ASP HIS VAL ILE ARG ILE VAL ASP GLU SEQRES 8 A 144 PHE LEU THR ILE GLY ASP GLU THR ALA PRO ARG PRO ALA SEQRES 9 A 144 ILE LEU ALA THR ASN VAL TYR ARG ARG GLU ALA ASP GLY SEQRES 10 A 144 TRP ARG MSE VAL LEU HIS HIS ALA SER PRO LEU GLN VAL SEQRES 11 A 144 GLY ALA LYS ALA GLY ALA ASP THR PRO PRO VAL VAL PHE SEQRES 12 A 144 HIS SEQRES 1 B 144 GLY MSE SER GLU PRO VAL PHE PRO THR PRO GLU ALA ALA SEQRES 2 B 144 GLU ASP ALA PHE TYR ALA ALA PHE GLU ALA ARG SER LEU SEQRES 3 B 144 ASP ASP MSE MSE ALA VAL TRP ALA ARG ASP ASP HIS VAL SEQRES 4 B 144 ALA CYS ILE HIS PRO LEU ALA ALA PRO LEU ASN GLY ARG SEQRES 5 B 144 ALA ALA VAL ALA ALA GLY TRP ARG SER MSE PHE GLY ALA SEQRES 6 B 144 ALA GLY ARG PHE ARG LEU GLN VAL LYS ALA VAL HIS GLU SEQRES 7 B 144 ILE ARG GLN ALA ASP HIS VAL ILE ARG ILE VAL ASP GLU SEQRES 8 B 144 PHE LEU THR ILE GLY ASP GLU THR ALA PRO ARG PRO ALA SEQRES 9 B 144 ILE LEU ALA THR ASN VAL TYR ARG ARG GLU ALA ASP GLY SEQRES 10 B 144 TRP ARG MSE VAL LEU HIS HIS ALA SER PRO LEU GLN VAL SEQRES 11 B 144 GLY ALA LYS ALA GLY ALA ASP THR PRO PRO VAL VAL PHE SEQRES 12 B 144 HIS MODRES 3GWR MSE A 28 MET SELENOMETHIONINE MODRES 3GWR MSE A 29 MET SELENOMETHIONINE MODRES 3GWR MSE A 61 MET SELENOMETHIONINE MODRES 3GWR MSE A 119 MET SELENOMETHIONINE MODRES 3GWR MSE B 1 MET SELENOMETHIONINE MODRES 3GWR MSE B 28 MET SELENOMETHIONINE MODRES 3GWR MSE B 29 MET SELENOMETHIONINE MODRES 3GWR MSE B 61 MET SELENOMETHIONINE MODRES 3GWR MSE B 119 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 29 8 HET MSE A 61 13 HET MSE A 119 8 HET MSE B 1 6 HET MSE B 28 8 HET MSE B 29 8 HET MSE B 61 13 HET MSE B 119 8 HET UNL A 200 9 HET PG4 A 144 7 HET PG4 A 145 7 HET PG4 A 146 13 HET UNL B 200 9 HET PG4 B 144 8 HET PG4 B 145 5 HET PG4 B 146 7 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 PG4 6(C8 H18 O5) FORMUL 11 HOH *105(H2 O) HELIX 1 1 THR A 8 ARG A 23 1 16 HELIX 2 2 SER A 24 TRP A 32 1 9 HELIX 3 3 GLY A 50 GLY A 66 1 17 HELIX 4 4 THR B 8 ARG B 23 1 16 HELIX 5 5 SER B 24 TRP B 32 1 9 HELIX 6 6 GLY B 50 GLY B 66 1 17 SHEET 1 A 6 LEU A 48 ASN A 49 0 SHEET 2 A 6 ALA A 39 ILE A 41 -1 N CYS A 40 O LEU A 48 SHEET 3 A 6 TRP A 117 PRO A 126 1 O HIS A 122 N ILE A 41 SHEET 4 A 6 ILE A 104 ARG A 112 -1 N LEU A 105 O SER A 125 SHEET 5 A 6 HIS A 83 ILE A 94 -1 N ARG A 86 O ASN A 108 SHEET 6 A 6 PHE A 68 ARG A 79 -1 N GLN A 71 O PHE A 91 SHEET 1 B 6 LEU B 48 ASN B 49 0 SHEET 2 B 6 ALA B 39 ILE B 41 -1 N CYS B 40 O LEU B 48 SHEET 3 B 6 TRP B 117 PRO B 126 1 O HIS B 122 N ILE B 41 SHEET 4 B 6 ILE B 104 ARG B 112 -1 N LEU B 105 O SER B 125 SHEET 5 B 6 HIS B 83 ILE B 94 -1 N GLU B 90 O ILE B 104 SHEET 6 B 6 PHE B 68 ARG B 79 -1 N VAL B 75 O ILE B 87 LINK C ASP A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N ALA A 30 1555 1555 1.33 LINK C SER A 60 N MSE A 61 1555 1555 1.34 LINK C MSE A 61 N PHE A 62 1555 1555 1.33 LINK C ARG A 118 N MSE A 119 1555 1555 1.34 LINK C MSE A 119 N VAL A 120 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.34 LINK C ASP B 27 N MSE B 28 1555 1555 1.33 LINK C MSE B 28 N MSE B 29 1555 1555 1.32 LINK C MSE B 29 N ALA B 30 1555 1555 1.34 LINK C SER B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N PHE B 62 1555 1555 1.32 LINK C ARG B 118 N MSE B 119 1555 1555 1.32 LINK C MSE B 119 N VAL B 120 1555 1555 1.33 SITE 1 AC1 7 PHE A 20 HIS A 42 PRO A 43 MSE A 61 SITE 2 AC1 7 GLU A 90 HIS A 122 ALA A 124 SITE 1 AC2 7 PHE B 20 HIS B 42 PRO B 43 MSE B 61 SITE 2 AC2 7 GLU B 90 HIS B 122 ALA B 124 SITE 1 AC3 2 ARG A 112 ASP B 27 SITE 1 AC4 4 GLU A 10 GLU A 77 ARG A 86 PRO B 100 SITE 1 AC5 5 PRO B 7 ALA B 18 GLU B 113 ALA B 114 SITE 2 AC5 5 HOH B 164 SITE 1 AC6 3 ARG B 79 GLN B 80 TRP B 117 SITE 1 AC7 5 ARG A 23 GLU B 21 ALA B 22 ARG B 23 SITE 2 AC7 5 PHE B 68 SITE 1 AC8 5 LEU A 25 ALA A 52 ARG A 59 SER B 60 SITE 2 AC8 5 ALA B 64 CRYST1 41.445 89.655 90.259 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011079 0.00000