data_3GX2 # _entry.id 3GX2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GX2 pdb_00003gx2 10.2210/pdb3gx2/pdb NDB UR0196 ? ? RCSB RCSB052413 ? ? WWPDB D_1000052413 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3GX3 . unspecified PDB 3GX5 . unspecified PDB 3GX6 . unspecified PDB 3GX7 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GX2 _pdbx_database_status.recvd_initial_deposition_date 2009-04-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Montange, R.K.' 1 'Batey, R.T.' 2 # _citation.id primary _citation.title 'Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 396 _citation.page_first 761 _citation.page_last 772 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20006621 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2009.12.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Montange, R.K.' 1 ? primary 'Mondragon, E.' 2 ? primary 'van Tyne, D.' 3 ? primary 'Garst, A.D.' 4 ? primary 'Ceres, P.' 5 ? primary 'Batey, R.T.' 6 ? # _cell.entry_id 3GX2 _cell.length_a 62.614 _cell.length_b 62.614 _cell.length_c 158.395 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GX2 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (94-MER)' 30568.338 1 ? 'U34C, A94G' ? ? 2 non-polymer syn SINEFUNGIN 381.387 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 A n 1 7 U n 1 8 C n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 G n 1 14 A n 1 15 G n 1 16 G n 1 17 U n 1 18 G n 1 19 G n 1 20 A n 1 21 G n 1 22 G n 1 23 G n 1 24 A n 1 25 C n 1 26 U n 1 27 G n 1 28 G n 1 29 C n 1 30 C n 1 31 C n 1 32 G n 1 33 A n 1 34 C n 1 35 G n 1 36 A n 1 37 A n 1 38 A n 1 39 C n 1 40 C n 1 41 C n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 C n 1 49 A n 1 50 G n 1 51 A n 1 52 A n 1 53 A n 1 54 U n 1 55 G n 1 56 G n 1 57 U n 1 58 G n 1 59 C n 1 60 C n 1 61 A n 1 62 A n 1 63 U n 1 64 U n 1 65 C n 1 66 C n 1 67 U n 1 68 G n 1 69 C n 1 70 A n 1 71 G n 1 72 C n 1 73 G n 1 74 G n 1 75 A n 1 76 A n 1 77 A n 1 78 C n 1 79 G n 1 80 U n 1 81 U n 1 82 G n 1 83 A n 1 84 A n 1 85 A n 1 86 G n 1 87 A n 1 88 U n 1 89 G n 1 90 A n 1 91 G n 1 92 C n 1 93 C n 1 94 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence is based on a sequence found in T. tengcongensis' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3GX2 _struct_ref.pdbx_db_accession 3GX2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GX2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3GX2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SFG non-polymer . SINEFUNGIN ADENOSYL-ORNITHINE 'C15 H23 N7 O5' 381.387 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3GX2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;30 mM magnesium chloride, 60 mM potassium chloride, 12 mM spermine-HCl, 10% MPD, 40 mM cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 303K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'magnesium chloride' ? ? ? 1 2 1 'potassium chloride' ? ? ? 1 3 1 spermine-HCl ? ? ? 1 4 1 MPD ? ? ? 1 5 1 cacodylate ? ? ? 1 6 2 'magnesium chloride' ? ? ? 1 7 2 'potassium chloride' ? ? ? 1 8 2 spermine-HCl ? ? ? 1 9 2 MPD ? ? ? 1 10 2 cacodylate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-01-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni Filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3GX2 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.9 _reflns.number_obs 7451 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.7 _reflns.B_iso_Wilson_estimate 68.1 _reflns.pdbx_redundancy 5.64 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.369 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 5.53 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 7500 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GX2 _refine.ls_number_reflns_obs 7333 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.09 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.410 _refine.ls_d_res_high 2.900 _refine.ls_percent_reflns_obs 97.88 _refine.ls_R_factor_obs 0.2283 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2219 _refine.ls_R_factor_R_free 0.2876 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.94 _refine.ls_number_reflns_R_free 729 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 68.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.273 _refine.solvent_model_param_bsol 44.845 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'pdb entry 2GIS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.36 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2030 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2064 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 19.410 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_angle_d 2.17 ? ? ? 'X-RAY DIFFRACTION' ? f_bond_d 0.003 ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 28.5 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.9000 3.1231 1265 0.2975 97.00 0.4178 . . 144 . . . . 'X-RAY DIFFRACTION' . 3.1231 3.4358 1288 0.2338 98.00 0.2924 . . 143 . . . . 'X-RAY DIFFRACTION' . 3.4358 3.9294 1309 0.2104 98.00 0.2934 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.9294 4.9371 1334 0.2063 99.00 0.2831 . . 151 . . . . 'X-RAY DIFFRACTION' . 4.9371 19.4101 1408 0.1963 97.00 0.2363 . . 150 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3GX2 _struct.title 'TteSAM-I riboswitch variant A94GU34C bound to sinefungin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GX2 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'kink-turn, pseudoknot, four-way junction, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 10 OP2 ? ? ? 1_555 I MG . MG ? ? A A 10 A MG 207 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc2 metalc ? ? A A 53 OP2 ? ? ? 1_555 D MG . MG ? ? A A 53 A MG 202 1_555 ? ? ? ? ? ? ? 2.951 ? ? metalc3 metalc ? ? A U 64 OP2 ? ? ? 1_555 I MG . MG ? ? A U 64 A MG 207 1_555 ? ? ? ? ? ? ? 2.842 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 91 N1 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 91 N2 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 89 O6 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 89 N1 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 87 N1 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? A A 12 N3 ? ? ? 1_555 A G 43 N2 ? ? A A 12 A G 43 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 15 O6 ? ? A G 13 A G 15 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 41 O2 ? ? A G 15 A C 41 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog26 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 17 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 17 A A 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 18 N3 ? ? ? 1_555 A A 37 N6 ? ? A G 18 A A 37 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog32 hydrog ? ? A G 19 N3 ? ? ? 1_555 A A 36 N6 ? ? A G 19 A A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A A 20 N6 ? ? ? 1_555 A G 35 N3 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog34 hydrog ? ? A A 20 N7 ? ? ? 1_555 A G 35 N2 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog35 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 62 N1 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog45 hydrog ? ? A G 23 N3 ? ? ? 1_555 A A 62 N6 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog46 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 26 N3 ? ? ? 1_555 A U 67 O2 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog50 hydrog ? ? A U 26 O4 ? ? ? 1_555 A U 67 N3 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog51 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 30 O2 ? ? ? 1_555 A A 61 N6 ? ? A C 30 A A 61 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog68 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 50 N2 ? ? ? 1_555 A A 53 N7 ? ? A G 50 A A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog74 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 85 N1 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 69 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 69 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 69 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 70 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 70 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 71 N1 ? ? ? 1_555 A U 80 O2 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? A G 71 O6 ? ? ? 1_555 A U 80 N3 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? A C 72 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 72 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 72 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 74 N2 ? ? ? 1_555 A A 77 N7 ? ? A G 74 A A 77 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SFG 301 ? 10 'BINDING SITE FOR RESIDUE SFG A 301' AC2 Software A MG 201 ? 2 'BINDING SITE FOR RESIDUE MG A 201' AC3 Software A MG 202 ? 4 'BINDING SITE FOR RESIDUE MG A 202' AC4 Software A MG 203 ? 2 'BINDING SITE FOR RESIDUE MG A 203' AC5 Software A MG 205 ? 1 'BINDING SITE FOR RESIDUE MG A 205' AC6 Software A MG 206 ? 1 'BINDING SITE FOR RESIDUE MG A 206' AC7 Software A MG 207 ? 3 'BINDING SITE FOR RESIDUE MG A 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 U A 7 ? U A 7 . ? 1_555 ? 2 AC1 10 G A 11 ? G A 11 . ? 1_555 ? 3 AC1 10 A A 45 ? A A 45 . ? 1_555 ? 4 AC1 10 A A 46 ? A A 46 . ? 1_555 ? 5 AC1 10 C A 47 ? C A 47 . ? 1_555 ? 6 AC1 10 U A 57 ? U A 57 . ? 1_555 ? 7 AC1 10 G A 58 ? G A 58 . ? 1_555 ? 8 AC1 10 C A 59 ? C A 59 . ? 1_555 ? 9 AC1 10 U A 88 ? U A 88 . ? 1_555 ? 10 AC1 10 G A 89 ? G A 89 . ? 1_555 ? 11 AC2 2 G A 55 ? G A 55 . ? 1_555 ? 12 AC2 2 G A 56 ? G A 56 . ? 1_555 ? 13 AC3 4 G A 50 ? G A 50 . ? 1_555 ? 14 AC3 4 A A 52 ? A A 52 . ? 1_555 ? 15 AC3 4 A A 53 ? A A 53 . ? 1_555 ? 16 AC3 4 U A 54 ? U A 54 . ? 1_555 ? 17 AC4 2 U A 64 ? U A 64 . ? 1_555 ? 18 AC4 2 U A 67 ? U A 67 . ? 1_555 ? 19 AC5 1 G A 32 ? G A 32 . ? 7_555 ? 20 AC6 1 G A 27 ? G A 27 . ? 1_555 ? 21 AC7 3 A A 10 ? A A 10 . ? 1_555 ? 22 AC7 3 A A 62 ? A A 62 . ? 1_555 ? 23 AC7 3 U A 64 ? U A 64 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GX2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GX2 _atom_sites.fract_transf_matrix[1][1] 0.015971 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015971 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006313 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 55 G G A . n A 1 56 G 56 56 56 G G A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 C 59 59 59 C C A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 U 63 63 63 U U A . n A 1 64 U 64 64 64 U U A . n A 1 65 C 65 65 65 C C A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 G 68 68 68 G G A . n A 1 69 C 69 69 69 C C A . n A 1 70 A 70 70 70 A A A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 A 76 76 76 A A A . n A 1 77 A 77 77 77 A A A . n A 1 78 C 78 78 78 C C A . n A 1 79 G 79 79 79 G G A . n A 1 80 U 80 80 80 U U A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 A 84 84 84 A A A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 U 88 88 88 U U A . n A 1 89 G 89 89 89 G G A . n A 1 90 A 90 90 90 A A A . n A 1 91 G 91 91 91 G G A . n A 1 92 C 92 92 92 C C A . n A 1 93 C 93 93 93 C C A . n A 1 94 G 94 94 94 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFG 1 301 301 SFG SFG A . C 3 MG 1 201 201 MG MG A . D 3 MG 1 202 202 MG MG A . E 3 MG 1 203 203 MG MG A . F 3 MG 1 204 204 MG MG A . G 3 MG 1 205 205 MG MG A . H 3 MG 1 206 206 MG MG A . I 3 MG 1 207 207 MG MG A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id A _pdbx_struct_conn_angle.ptnr1_label_seq_id 10 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id A _pdbx_struct_conn_angle.ptnr1_auth_seq_id 10 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id I _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 207 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id U _pdbx_struct_conn_angle.ptnr3_label_seq_id 64 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id U _pdbx_struct_conn_angle.ptnr3_auth_seq_id 64 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 96.9 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 11 3 'Structure model' '_struct_conn.pdbx_dist_value' 12 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 52.2028 _pdbx_refine_tls.origin_y 52.9523 _pdbx_refine_tls.origin_z 23.4011 _pdbx_refine_tls.T[1][1] 0.2685 _pdbx_refine_tls.T[2][2] 0.1915 _pdbx_refine_tls.T[3][3] 0.2744 _pdbx_refine_tls.T[1][2] 0.0307 _pdbx_refine_tls.T[1][3] -0.0188 _pdbx_refine_tls.T[2][3] -0.1193 _pdbx_refine_tls.L[1][1] 1.2897 _pdbx_refine_tls.L[2][2] 0.0399 _pdbx_refine_tls.L[3][3] 2.8657 _pdbx_refine_tls.L[1][2] 1.6110 _pdbx_refine_tls.L[1][3] 0.0771 _pdbx_refine_tls.L[2][3] 0.8401 _pdbx_refine_tls.S[1][1] 0.3729 _pdbx_refine_tls.S[1][2] -0.1506 _pdbx_refine_tls.S[1][3] -0.0240 _pdbx_refine_tls.S[2][1] -0.2171 _pdbx_refine_tls.S[2][2] 0.0324 _pdbx_refine_tls.S[2][3] -0.0196 _pdbx_refine_tls.S[3][1] -0.0905 _pdbx_refine_tls.S[3][2] 0.1627 _pdbx_refine_tls.S[3][3] -0.3089 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine)' ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.481 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.126 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A G 1 ? ? P A G 2 ? ? "O5'" A G 2 ? ? 85.36 104.00 -18.64 1.90 Y 2 1 "O3'" A G 1 ? ? P A G 2 ? ? OP2 A G 2 ? ? 83.84 105.20 -21.36 2.20 Y 3 1 "O3'" A G 1 ? ? P A G 2 ? ? OP1 A G 2 ? ? 85.36 105.20 -19.84 2.20 Y 4 1 OP1 A G 2 ? ? P A G 2 ? ? OP2 A G 2 ? ? 129.92 119.60 10.32 1.50 N 5 1 "O5'" A G 2 ? ? P A G 2 ? ? OP2 A G 2 ? ? 119.25 110.70 8.55 1.20 N 6 1 "O3'" A U 7 ? ? P A C 8 ? ? "O5'" A C 8 ? ? 84.84 104.00 -19.16 1.90 Y 7 1 "O3'" A U 7 ? ? P A C 8 ? ? OP2 A C 8 ? ? 84.55 105.20 -20.65 2.20 Y 8 1 "O3'" A U 7 ? ? P A C 8 ? ? OP1 A C 8 ? ? 84.69 105.20 -20.51 2.20 Y 9 1 OP1 A C 8 ? ? P A C 8 ? ? OP2 A C 8 ? ? 129.86 119.60 10.26 1.50 N 10 1 "O5'" A C 8 ? ? P A C 8 ? ? OP2 A C 8 ? ? 118.88 110.70 8.18 1.20 N 11 1 "C3'" A A 9 ? ? "O3'" A A 9 ? ? P A A 10 ? ? 130.08 119.70 10.38 1.20 Y 12 1 P A A 10 ? ? "O5'" A A 10 ? ? "C5'" A A 10 ? ? 107.65 120.90 -13.25 1.60 N 13 1 "C3'" A G 11 ? ? "O3'" A G 11 ? ? P A A 12 ? ? 106.95 119.70 -12.75 1.20 Y 14 1 "C3'" A G 13 ? ? "O3'" A G 13 ? ? P A A 14 ? ? 111.98 119.70 -7.72 1.20 Y 15 1 N9 A A 14 ? ? "C1'" A A 14 ? ? "C2'" A A 14 ? ? 121.81 114.00 7.81 1.30 N 16 1 "O4'" A A 14 ? ? "C1'" A A 14 ? ? N9 A A 14 ? ? 101.90 108.20 -6.30 0.80 N 17 1 "O5'" A G 15 ? ? "C5'" A G 15 ? ? "C4'" A G 15 ? ? 104.39 109.40 -5.01 0.80 N 18 1 P A G 15 ? ? "O5'" A G 15 ? ? "C5'" A G 15 ? ? 133.74 120.90 12.84 1.60 N 19 1 N9 A G 16 ? ? "C1'" A G 16 ? ? "C2'" A G 16 ? ? 105.01 112.00 -6.99 1.10 N 20 1 "C3'" A G 16 ? ? "O3'" A G 16 ? ? P A U 17 ? ? 109.61 119.70 -10.09 1.20 Y 21 1 N1 A U 17 ? ? "C1'" A U 17 ? ? "C2'" A U 17 ? ? 97.25 112.00 -14.75 1.10 N 22 1 "C3'" A U 17 ? ? "O3'" A U 17 ? ? P A G 18 ? ? 107.12 119.70 -12.58 1.20 Y 23 1 "O3'" A G 18 ? ? P A G 19 ? ? "O5'" A G 19 ? ? 81.08 104.00 -22.92 1.90 Y 24 1 "O3'" A G 18 ? ? P A G 19 ? ? OP2 A G 19 ? ? 85.10 105.20 -20.10 2.20 Y 25 1 "O3'" A G 18 ? ? P A G 19 ? ? OP1 A G 19 ? ? 86.51 105.20 -18.69 2.20 Y 26 1 "O5'" A G 19 ? ? P A G 19 ? ? OP2 A G 19 ? ? 120.54 110.70 9.84 1.20 N 27 1 "C3'" A G 19 ? ? "O3'" A G 19 ? ? P A A 20 ? ? 127.85 119.70 8.15 1.20 Y 28 1 "C3'" A A 20 ? ? "O3'" A A 20 ? ? P A G 21 ? ? 130.55 119.70 10.85 1.20 Y 29 1 "C3'" A G 21 ? ? "O3'" A G 21 ? ? P A G 22 ? ? 110.94 119.70 -8.76 1.20 Y 30 1 "C3'" A A 33 ? ? "O3'" A A 33 ? ? P A C 34 ? ? 128.31 119.70 8.61 1.20 Y 31 1 "C3'" A A 36 ? ? "O3'" A A 36 ? ? P A A 37 ? ? 111.05 119.70 -8.65 1.20 Y 32 1 "O3'" A G 43 ? ? P A C 44 ? ? "O5'" A C 44 ? ? 85.21 104.00 -18.79 1.90 Y 33 1 "O3'" A G 43 ? ? P A C 44 ? ? OP2 A C 44 ? ? 83.52 105.20 -21.68 2.20 Y 34 1 "O3'" A G 43 ? ? P A C 44 ? ? OP1 A C 44 ? ? 86.04 105.20 -19.16 2.20 Y 35 1 OP1 A C 44 ? ? P A C 44 ? ? OP2 A C 44 ? ? 129.92 119.60 10.32 1.50 N 36 1 "O5'" A C 44 ? ? P A C 44 ? ? OP2 A C 44 ? ? 119.26 110.70 8.56 1.20 N 37 1 N1 A C 47 ? ? "C1'" A C 47 ? ? "C2'" A C 47 ? ? 102.27 112.00 -9.73 1.10 N 38 1 "C3'" A C 47 ? ? "O3'" A C 47 ? ? P A C 48 ? ? 104.25 119.70 -15.45 1.20 Y 39 1 "O3'" A A 52 ? ? P A A 53 ? ? "O5'" A A 53 ? ? 85.59 104.00 -18.41 1.90 Y 40 1 "O3'" A A 52 ? ? P A A 53 ? ? OP2 A A 53 ? ? 83.52 105.20 -21.68 2.20 Y 41 1 "O3'" A A 52 ? ? P A A 53 ? ? OP1 A A 53 ? ? 85.32 105.20 -19.88 2.20 Y 42 1 OP1 A A 53 ? ? P A A 53 ? ? OP2 A A 53 ? ? 129.84 119.60 10.24 1.50 N 43 1 "O5'" A A 53 ? ? P A A 53 ? ? OP2 A A 53 ? ? 119.15 110.70 8.45 1.20 N 44 1 "O3'" A U 54 ? ? P A G 55 ? ? "O5'" A G 55 ? ? 85.71 104.00 -18.29 1.90 Y 45 1 "O3'" A U 54 ? ? P A G 55 ? ? OP2 A G 55 ? ? 83.36 105.20 -21.84 2.20 Y 46 1 "O3'" A U 54 ? ? P A G 55 ? ? OP1 A G 55 ? ? 85.39 105.20 -19.81 2.20 Y 47 1 OP1 A G 55 ? ? P A G 55 ? ? OP2 A G 55 ? ? 129.98 119.60 10.38 1.50 N 48 1 "O5'" A G 55 ? ? P A G 55 ? ? OP2 A G 55 ? ? 119.16 110.70 8.46 1.20 N 49 1 "O4'" A U 63 ? ? "C1'" A U 63 ? ? N1 A U 63 ? ? 116.63 108.50 8.13 0.70 N 50 1 "C3'" A U 63 ? ? "O3'" A U 63 ? ? P A U 64 ? ? 127.27 119.70 7.57 1.20 Y 51 1 P A U 64 ? ? "O5'" A U 64 ? ? "C5'" A U 64 ? ? 110.86 120.90 -10.04 1.60 N 52 1 "O4'" A U 64 ? ? "C1'" A U 64 ? ? N1 A U 64 ? ? 113.25 108.50 4.75 0.70 N 53 1 N1 A C 65 ? ? "C1'" A C 65 ? ? "C2'" A C 65 ? ? 96.32 112.00 -15.68 1.10 N 54 1 "C3'" A C 65 ? ? "O3'" A C 65 ? ? P A C 66 ? ? 110.47 119.70 -9.23 1.20 Y 55 1 N1 A C 69 ? ? "C1'" A C 69 ? ? "C2'" A C 69 ? ? 104.98 112.00 -7.02 1.10 N 56 1 "C3'" A A 70 ? ? "O3'" A A 70 ? ? P A G 71 ? ? 112.30 119.70 -7.40 1.20 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 MG MG MG N N 111 SFG N N N N 112 SFG CA C N S 113 SFG C C N N 114 SFG O O N N 115 SFG OXT O N N 116 SFG CB C N N 117 SFG CG C N N 118 SFG CD C N S 119 SFG NE N N N 120 SFG "C5'" C N N 121 SFG "C4'" C N R 122 SFG "O4'" O N N 123 SFG "C3'" C N S 124 SFG "O3'" O N N 125 SFG "C2'" C N R 126 SFG "O2'" O N N 127 SFG "C1'" C N R 128 SFG N9 N Y N 129 SFG C8 C Y N 130 SFG N7 N Y N 131 SFG C5 C Y N 132 SFG C6 C Y N 133 SFG N6 N N N 134 SFG N1 N Y N 135 SFG C2 C Y N 136 SFG N3 N Y N 137 SFG C4 C Y N 138 SFG HN1 H N N 139 SFG HN2 H N N 140 SFG HA H N N 141 SFG HXT H N N 142 SFG HB1 H N N 143 SFG HB2 H N N 144 SFG HG1 H N N 145 SFG HG2 H N N 146 SFG HD H N N 147 SFG HNE1 H N N 148 SFG HNE2 H N N 149 SFG "H5'1" H N N 150 SFG "H5'2" H N N 151 SFG "H4'" H N N 152 SFG "H3'" H N N 153 SFG "HO3'" H N N 154 SFG "H2'" H N N 155 SFG "HO2'" H N N 156 SFG "H1'" H N N 157 SFG H8 H N N 158 SFG HN61 H N N 159 SFG HN62 H N N 160 SFG H2 H N N 161 U OP3 O N N 162 U P P N N 163 U OP1 O N N 164 U OP2 O N N 165 U "O5'" O N N 166 U "C5'" C N N 167 U "C4'" C N R 168 U "O4'" O N N 169 U "C3'" C N S 170 U "O3'" O N N 171 U "C2'" C N R 172 U "O2'" O N N 173 U "C1'" C N R 174 U N1 N N N 175 U C2 C N N 176 U O2 O N N 177 U N3 N N N 178 U C4 C N N 179 U O4 O N N 180 U C5 C N N 181 U C6 C N N 182 U HOP3 H N N 183 U HOP2 H N N 184 U "H5'" H N N 185 U "H5''" H N N 186 U "H4'" H N N 187 U "H3'" H N N 188 U "HO3'" H N N 189 U "H2'" H N N 190 U "HO2'" H N N 191 U "H1'" H N N 192 U H3 H N N 193 U H5 H N N 194 U H6 H N N 195 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 SFG N CA sing N N 116 SFG N HN1 sing N N 117 SFG N HN2 sing N N 118 SFG CA C sing N N 119 SFG CA CB sing N N 120 SFG CA HA sing N N 121 SFG C O doub N N 122 SFG C OXT sing N N 123 SFG OXT HXT sing N N 124 SFG CB CG sing N N 125 SFG CB HB1 sing N N 126 SFG CB HB2 sing N N 127 SFG CG CD sing N N 128 SFG CG HG1 sing N N 129 SFG CG HG2 sing N N 130 SFG CD NE sing N N 131 SFG CD "C5'" sing N N 132 SFG CD HD sing N N 133 SFG NE HNE1 sing N N 134 SFG NE HNE2 sing N N 135 SFG "C5'" "C4'" sing N N 136 SFG "C5'" "H5'1" sing N N 137 SFG "C5'" "H5'2" sing N N 138 SFG "C4'" "O4'" sing N N 139 SFG "C4'" "C3'" sing N N 140 SFG "C4'" "H4'" sing N N 141 SFG "O4'" "C1'" sing N N 142 SFG "C3'" "O3'" sing N N 143 SFG "C3'" "C2'" sing N N 144 SFG "C3'" "H3'" sing N N 145 SFG "O3'" "HO3'" sing N N 146 SFG "C2'" "O2'" sing N N 147 SFG "C2'" "C1'" sing N N 148 SFG "C2'" "H2'" sing N N 149 SFG "O2'" "HO2'" sing N N 150 SFG "C1'" N9 sing N N 151 SFG "C1'" "H1'" sing N N 152 SFG N9 C8 sing Y N 153 SFG N9 C4 sing Y N 154 SFG C8 N7 doub Y N 155 SFG C8 H8 sing N N 156 SFG N7 C5 sing Y N 157 SFG C5 C6 sing Y N 158 SFG C5 C4 doub Y N 159 SFG C6 N6 sing N N 160 SFG C6 N1 doub Y N 161 SFG N6 HN61 sing N N 162 SFG N6 HN62 sing N N 163 SFG N1 C2 sing Y N 164 SFG C2 N3 doub Y N 165 SFG C2 H2 sing N N 166 SFG N3 C4 sing Y N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GX2 'double helix' 3GX2 'a-form double helix' 3GX2 tetraloop 3GX2 'bulge loop' 3GX2 'mismatched base pair' 3GX2 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 93 1_555 -0.524 0.303 -0.065 -2.858 -9.443 0.366 1 A_G1:C93_A A 1 ? A 93 ? 19 1 1 A G 2 1_555 A C 92 1_555 -1.463 -0.269 0.089 -4.068 -15.501 3.819 2 A_G2:C92_A A 2 ? A 92 ? 19 1 1 A C 3 1_555 A G 91 1_555 -0.448 -0.085 0.029 -2.943 -10.460 2.294 3 A_C3:G91_A A 3 ? A 91 ? 19 1 1 A U 4 1_555 A A 90 1_555 -0.563 0.011 0.067 -11.696 -11.112 2.084 4 A_U4:A90_A A 4 ? A 90 ? 20 1 1 A U 5 1_555 A G 89 1_555 1.582 -0.582 0.523 -6.575 -6.859 1.279 5 A_U5:G89_A A 5 ? A 89 ? 28 1 1 A A 6 1_555 A U 88 1_555 0.059 -0.207 0.026 5.037 -16.179 4.979 6 A_A6:U88_A A 6 ? A 88 ? 20 1 1 A U 7 1_555 A A 87 1_555 0.470 0.058 0.041 0.205 -10.683 13.066 7 A_U7:A87_A A 7 ? A 87 ? ? 1 1 A C 8 1_555 A G 86 1_555 -0.669 -0.012 -0.164 13.315 -3.467 -3.929 8 A_C8:G86_A A 8 ? A 86 ? 19 1 1 A U 64 1_555 A A 85 1_555 -0.165 0.094 0.400 -2.192 -0.105 -3.470 9 A_U64:A85_A A 64 ? A 85 ? 20 1 1 A G 35 1_555 A A 20 1_555 6.815 -3.669 0.226 14.711 24.192 4.154 10 A_G35:A20_A A 35 ? A 20 ? 11 10 1 A A 36 1_555 A G 19 1_555 -6.945 -5.052 -0.225 -19.407 -3.892 3.067 11 A_A36:G19_A A 36 ? A 19 ? ? 6 1 A A 37 1_555 A G 18 1_555 -7.018 -3.429 -0.071 4.624 -6.603 7.633 12 A_A37:G18_A A 37 ? A 18 ? ? ? 1 A A 38 1_555 A U 17 1_555 -0.213 -0.014 -0.284 3.775 1.722 9.641 13 A_A38:U17_A A 38 ? A 17 ? 20 1 1 A C 39 1_555 A G 16 1_555 -0.711 -0.012 -0.753 17.050 2.592 1.045 14 A_C39:G16_A A 39 ? A 16 ? 19 1 1 A C 40 1_555 A G 15 1_555 -0.888 0.234 -1.243 1.844 18.734 13.027 15 A_C40:G15_A A 40 ? A 15 ? ? 1 1 A C 41 1_555 A G 13 1_555 -1.219 1.369 -0.670 8.827 -10.373 30.576 16 A_C41:G13_A A 41 ? A 13 ? ? 1 1 A G 42 1_555 A C 60 1_555 -0.272 0.031 -0.217 -2.025 -4.958 5.718 17 A_G42:C60_A A 42 ? A 60 ? 19 1 1 A G 43 1_555 A C 59 1_555 -0.153 0.178 -0.329 -13.644 -14.818 6.479 18 A_G43:C59_A A 43 ? A 59 ? 19 1 1 A C 44 1_555 A G 58 1_555 0.380 -0.049 1.055 -24.381 -11.778 -3.364 19 A_C44:G58_A A 44 ? A 58 ? 19 1 1 A G 21 1_555 A C 31 1_555 0.022 0.050 0.086 -0.038 15.322 12.075 20 A_G21:C31_A A 21 ? A 31 ? 19 1 1 A G 22 1_555 A C 30 1_555 0.151 0.238 -0.208 -11.075 -1.829 2.381 21 A_G22:C30_A A 22 ? A 30 ? 19 1 1 A G 23 1_555 A C 29 1_555 0.450 0.157 0.522 8.798 1.823 4.414 22 A_G23:C29_A A 23 ? A 29 ? 19 1 1 A C 65 1_555 A G 28 1_555 -0.524 -0.092 -0.043 10.913 -22.717 -5.856 23 A_C65:G28_A A 65 ? A 28 ? 19 1 1 A C 66 1_555 A G 27 1_555 -0.199 -0.281 0.516 6.290 -21.183 2.265 24 A_C66:G27_A A 66 ? A 27 ? 19 1 1 A U 67 1_555 A U 26 1_555 2.223 -1.752 0.490 0.344 -35.566 12.051 25 A_U67:U26_A A 67 ? A 26 ? 16 1 1 A G 68 1_555 A C 25 1_555 0.023 -0.054 -0.363 -23.708 -34.236 11.263 26 A_G68:C25_A A 68 ? A 25 ? 19 1 1 A C 47 1_555 A G 56 1_555 -1.326 0.172 -0.780 17.652 -4.498 -14.075 27 A_C47:G56_A A 47 ? A 56 ? ? 1 1 A C 48 1_555 A G 55 1_555 0.181 -0.280 -0.396 11.072 -8.101 0.620 28 A_C48:G55_A A 48 ? A 55 ? 19 1 1 A A 49 1_555 A U 54 1_555 -0.077 0.113 -0.049 8.619 10.203 11.367 29 A_A49:U54_A A 49 ? A 54 ? 20 1 1 A G 50 1_555 A A 53 1_555 6.929 -4.651 0.576 20.891 2.447 -8.665 30 A_G50:A53_A A 50 ? A 53 ? ? ? 1 A C 69 1_555 A G 82 1_555 0.594 0.054 -0.558 8.984 13.339 -0.567 31 A_C69:G82_A A 69 ? A 82 ? 19 1 1 A A 70 1_555 A U 81 1_555 0.381 -0.194 -0.032 1.996 9.412 9.729 32 A_A70:U81_A A 70 ? A 81 ? 20 1 1 A G 71 1_555 A U 80 1_555 -2.239 -0.414 -0.153 -3.619 -8.998 7.060 33 A_G71:U80_A A 71 ? A 80 ? 28 1 1 A C 72 1_555 A G 79 1_555 0.175 0.161 -0.182 -0.234 -9.525 5.649 34 A_C72:G79_A A 72 ? A 79 ? 19 1 1 A G 73 1_555 A C 78 1_555 -0.057 -0.198 -0.166 6.778 1.045 -0.433 35 A_G73:C78_A A 73 ? A 78 ? 19 1 1 A G 74 1_555 A A 77 1_555 7.029 -5.598 0.695 9.010 -3.842 -25.023 36 A_G74:A77_A A 74 ? A 77 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 93 1_555 A G 2 1_555 A C 92 1_555 0.181 -1.695 3.278 -5.360 2.647 33.073 -3.357 -1.171 3.070 4.602 9.321 33.594 1 AA_G1G2:C92C93_AA A 1 ? A 93 ? A 2 ? A 92 ? 1 A G 2 1_555 A C 92 1_555 A C 3 1_555 A G 91 1_555 -0.592 -1.788 3.073 -3.552 3.748 36.063 -3.340 0.494 2.922 6.016 5.701 36.419 2 AA_G2C3:G91C92_AA A 2 ? A 92 ? A 3 ? A 91 ? 1 A C 3 1_555 A G 91 1_555 A U 4 1_555 A A 90 1_555 0.086 -1.440 3.407 -2.207 12.974 33.018 -4.194 -0.452 2.661 21.782 3.704 35.476 3 AA_C3U4:A90G91_AA A 3 ? A 91 ? A 4 ? A 90 ? 1 A U 4 1_555 A A 90 1_555 A U 5 1_555 A G 89 1_555 0.030 -1.084 3.233 -2.984 6.326 38.111 -2.381 -0.397 3.011 9.590 4.523 38.724 4 AA_U4U5:G89A90_AA A 4 ? A 90 ? A 5 ? A 89 ? 1 A U 5 1_555 A G 89 1_555 A A 6 1_555 A U 88 1_555 -0.022 -1.406 2.856 6.559 7.596 25.968 -4.410 1.328 2.288 16.156 -13.951 27.809 5 AA_U5A6:U88G89_AA A 5 ? A 89 ? A 6 ? A 88 ? 1 A A 6 1_555 A U 88 1_555 A U 7 1_555 A A 87 1_555 0.300 -0.720 3.498 -0.015 15.545 32.862 -3.395 -0.484 2.879 25.759 0.026 36.261 6 AA_A6U7:A87U88_AA A 6 ? A 88 ? A 7 ? A 87 ? 1 A U 7 1_555 A A 87 1_555 A C 8 1_555 A G 86 1_555 -0.303 -1.374 2.962 2.267 5.936 27.168 -4.066 1.093 2.576 12.421 -4.743 27.888 7 AA_U7C8:G86A87_AA A 7 ? A 87 ? A 8 ? A 86 ? 1 A C 8 1_555 A G 86 1_555 A U 64 1_555 A A 85 1_555 -0.625 -1.889 3.509 -5.905 6.373 40.006 -3.433 0.218 3.240 9.184 8.510 40.901 8 AA_C8U64:A85G86_AA A 8 ? A 86 ? A 64 ? A 85 ? 1 A G 35 1_555 A A 20 1_555 A A 36 1_555 A G 19 1_555 -0.513 -1.910 4.151 -6.256 -1.747 -15.249 8.066 -6.922 3.430 6.226 -22.303 -16.567 9 AA_G35A36:G19A20_AA A 35 ? A 20 ? A 36 ? A 19 ? 1 A A 36 1_555 A G 19 1_555 A A 37 1_555 A G 18 1_555 -0.756 0.140 3.282 -12.544 0.523 40.266 0.139 -0.296 3.362 0.738 17.708 42.100 10 AA_A36A37:G18G19_AA A 36 ? A 19 ? A 37 ? A 18 ? 1 A A 37 1_555 A G 18 1_555 A A 38 1_555 A U 17 1_555 -0.383 -0.595 3.504 -11.986 11.927 60.950 -1.139 -0.206 3.364 11.522 11.579 63.034 11 AA_A37A38:U17G18_AA A 37 ? A 18 ? A 38 ? A 17 ? 1 A A 38 1_555 A U 17 1_555 A C 39 1_555 A G 16 1_555 -0.273 -1.965 3.007 3.194 -2.934 27.502 -3.419 1.291 3.144 -6.123 -6.665 27.835 12 AA_A38C39:G16U17_AA A 38 ? A 17 ? A 39 ? A 16 ? 1 A C 39 1_555 A G 16 1_555 A C 40 1_555 A G 15 1_555 1.718 -1.980 3.782 5.477 5.575 27.742 -5.412 -2.047 3.591 11.344 -11.146 28.801 13 AA_C39C40:G15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 1 A C 40 1_555 A G 15 1_555 A C 41 1_555 A G 13 1_555 2.472 -1.286 2.860 -5.955 21.289 33.652 -3.612 -4.092 1.396 32.755 9.163 40.087 14 AA_C40C41:G13G15_AA A 40 ? A 15 ? A 41 ? A 13 ? 1 A C 41 1_555 A G 13 1_555 A G 42 1_555 A C 60 1_555 2.469 -0.065 3.590 -6.966 3.233 65.564 -0.199 -2.567 3.336 2.975 6.410 65.962 15 AA_C41G42:C60G13_AA A 41 ? A 13 ? A 42 ? A 60 ? 1 A G 42 1_555 A C 60 1_555 A G 43 1_555 A C 59 1_555 0.392 -1.824 3.607 -0.906 7.121 32.327 -4.456 -0.848 3.134 12.596 1.602 33.093 16 AA_G42G43:C59C60_AA A 42 ? A 60 ? A 43 ? A 59 ? 1 A G 43 1_555 A C 59 1_555 A C 44 1_555 A G 58 1_555 -1.068 -1.272 3.486 -10.687 -2.716 38.737 -1.503 0.191 3.718 -3.996 15.727 40.218 17 AA_G43C44:G58C59_AA A 43 ? A 59 ? A 44 ? A 58 ? 1 A G 21 1_555 A C 31 1_555 A G 22 1_555 A C 30 1_555 -0.194 -2.296 3.563 8.003 -0.155 29.686 -4.300 2.070 3.408 -0.297 -15.273 30.723 18 AA_G21G22:C30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 1 A G 22 1_555 A C 30 1_555 A G 23 1_555 A C 29 1_555 -0.281 -2.194 2.719 -2.779 0.318 25.235 -5.069 -0.027 2.706 0.726 6.336 25.387 19 AA_G22G23:C29C30_AA A 22 ? A 30 ? A 23 ? A 29 ? 1 A G 23 1_555 A C 29 1_555 A C 65 1_555 A G 28 1_555 -3.104 -0.317 3.031 -0.803 -1.228 48.087 -0.298 3.749 3.086 -1.506 0.985 48.108 20 AA_G23C65:G28C29_AA A 23 ? A 29 ? A 65 ? A 28 ? 1 A C 65 1_555 A G 28 1_555 A C 66 1_555 A G 27 1_555 -0.410 -2.232 3.292 -9.085 8.185 28.937 -5.573 -0.844 2.589 15.532 17.242 31.364 21 AA_C65C66:G27G28_AA A 65 ? A 28 ? A 66 ? A 27 ? 1 A C 66 1_555 A G 27 1_555 A U 67 1_555 A U 26 1_555 0.526 -0.303 3.397 5.146 8.785 49.152 -1.017 -0.235 3.336 10.431 -6.110 50.131 22 AA_C66U67:U26G27_AA A 66 ? A 27 ? A 67 ? A 26 ? 1 A U 67 1_555 A U 26 1_555 A G 68 1_555 A C 25 1_555 -0.255 -0.607 3.490 11.011 18.233 35.878 -2.840 1.557 2.708 26.883 -16.236 41.544 23 AA_U67G68:C25U26_AA A 67 ? A 26 ? A 68 ? A 25 ? 1 A C 47 1_555 A G 56 1_555 A C 48 1_555 A G 55 1_555 0.486 -1.914 3.610 -3.022 6.210 45.154 -3.044 -0.907 3.295 8.032 3.909 45.652 24 AA_C47C48:G55G56_AA A 47 ? A 56 ? A 48 ? A 55 ? 1 A C 48 1_555 A G 55 1_555 A A 49 1_555 A U 54 1_555 0.345 -2.170 3.405 -2.658 5.462 26.712 -5.898 -1.367 2.866 11.631 5.660 27.381 25 AA_C48A49:U54G55_AA A 48 ? A 55 ? A 49 ? A 54 ? 1 A A 49 1_555 A U 54 1_555 A G 50 1_555 A A 53 1_555 -2.087 -0.895 2.975 1.761 12.325 50.568 -1.739 2.483 2.635 14.183 -2.026 51.980 26 AA_A49G50:A53U54_AA A 49 ? A 54 ? A 50 ? A 53 ? 1 A C 69 1_555 A G 82 1_555 A A 70 1_555 A U 81 1_555 -0.106 -1.757 3.353 -8.174 5.481 26.607 -4.830 -1.633 2.848 11.425 17.038 28.338 27 AA_C69A70:U81G82_AA A 69 ? A 82 ? A 70 ? A 81 ? 1 A A 70 1_555 A U 81 1_555 A G 71 1_555 A U 80 1_555 -0.425 -1.706 3.339 -3.387 4.488 23.638 -5.445 -0.039 2.998 10.762 8.123 24.288 28 AA_A70G71:U80U81_AA A 70 ? A 81 ? A 71 ? A 80 ? 1 A G 71 1_555 A U 80 1_555 A C 72 1_555 A G 79 1_555 -0.384 -0.959 3.119 -4.590 8.139 41.798 -2.075 0.098 2.916 11.240 6.338 42.784 29 AA_G71C72:G79U80_AA A 71 ? A 80 ? A 72 ? A 79 ? 1 A C 72 1_555 A G 79 1_555 A G 73 1_555 A C 78 1_555 -0.316 -2.010 3.243 0.384 3.049 23.096 -5.972 0.909 2.950 7.573 -0.954 23.296 30 AA_C72G73:C78G79_AA A 72 ? A 79 ? A 73 ? A 78 ? 1 A G 73 1_555 A C 78 1_555 A G 74 1_555 A A 77 1_555 -2.122 -1.442 3.371 -0.942 16.457 55.591 -2.358 2.146 2.907 17.228 0.986 57.796 31 AA_G73G74:A77C78_AA A 73 ? A 78 ? A 74 ? A 77 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SINEFUNGIN SFG 3 'MAGNESIUM ION' MG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GIS _pdbx_initial_refinement_model.details 'pdb entry 2GIS' #