data_3H4R # _entry.id 3H4R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3H4R pdb_00003h4r 10.2210/pdb3h4r/pdb RCSB RCSB052690 ? ? WWPDB D_1000052690 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-12-07 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2021-10-13 6 'Structure model' 1 5 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3H4R _pdbx_database_status.recvd_initial_deposition_date 2009-04-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bell, C.E.' 1 'Zhang, J.' 2 # _citation.id primary _citation.title 'Crystal structure of E. coli RecE protein reveals a toroidal tetramer for processing double-stranded DNA breaks.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 690 _citation.page_last 702 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19446525 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.03.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, J.' 1 ? primary 'Xing, X.' 2 ? primary 'Herr, A.B.' 3 ? primary 'Bell, C.E.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Exodeoxyribonuclease 8' _entity.formula_weight 30403.252 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.11.- _entity.pdbx_mutation P658L _entity.pdbx_fragment 'C-terminal domain: UNP residues 606-866' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Exodeoxyribonuclease VIII, EXO VIII' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEE EKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVK TTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSD CLNTDEWPAIKTLSLPRWAKEYAND ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEE EKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVK TTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSD CLNTDEWPAIKTLSLPRWAKEYAND ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLU n 1 6 ASN n 1 7 TYR n 1 8 HIS n 1 9 ALA n 1 10 GLY n 1 11 PRO n 1 12 GLY n 1 13 ILE n 1 14 SER n 1 15 LYS n 1 16 SER n 1 17 GLN n 1 18 LEU n 1 19 ASP n 1 20 ASP n 1 21 ILE n 1 22 ALA n 1 23 ASP n 1 24 THR n 1 25 PRO n 1 26 ALA n 1 27 LEU n 1 28 TYR n 1 29 LEU n 1 30 TRP n 1 31 ARG n 1 32 LYS n 1 33 ASN n 1 34 ALA n 1 35 PRO n 1 36 VAL n 1 37 ASP n 1 38 THR n 1 39 THR n 1 40 LYS n 1 41 THR n 1 42 LYS n 1 43 THR n 1 44 LEU n 1 45 ASP n 1 46 LEU n 1 47 GLY n 1 48 THR n 1 49 ALA n 1 50 PHE n 1 51 HIS n 1 52 CYS n 1 53 ARG n 1 54 VAL n 1 55 LEU n 1 56 GLU n 1 57 LEU n 1 58 GLU n 1 59 GLU n 1 60 PHE n 1 61 SER n 1 62 ASN n 1 63 ARG n 1 64 PHE n 1 65 ILE n 1 66 VAL n 1 67 ALA n 1 68 PRO n 1 69 GLU n 1 70 PHE n 1 71 ASN n 1 72 ARG n 1 73 ARG n 1 74 THR n 1 75 ASN n 1 76 ALA n 1 77 GLY n 1 78 LYS n 1 79 GLU n 1 80 GLU n 1 81 GLU n 1 82 LYS n 1 83 ALA n 1 84 PHE n 1 85 LEU n 1 86 MET n 1 87 GLU n 1 88 CYS n 1 89 ALA n 1 90 SER n 1 91 THR n 1 92 GLY n 1 93 LYS n 1 94 THR n 1 95 VAL n 1 96 ILE n 1 97 THR n 1 98 ALA n 1 99 GLU n 1 100 GLU n 1 101 GLY n 1 102 ARG n 1 103 LYS n 1 104 ILE n 1 105 GLU n 1 106 LEU n 1 107 MET n 1 108 TYR n 1 109 GLN n 1 110 SER n 1 111 VAL n 1 112 MET n 1 113 ALA n 1 114 LEU n 1 115 PRO n 1 116 LEU n 1 117 GLY n 1 118 GLN n 1 119 TRP n 1 120 LEU n 1 121 VAL n 1 122 GLU n 1 123 SER n 1 124 ALA n 1 125 GLY n 1 126 HIS n 1 127 ALA n 1 128 GLU n 1 129 SER n 1 130 SER n 1 131 ILE n 1 132 TYR n 1 133 TRP n 1 134 GLU n 1 135 ASP n 1 136 PRO n 1 137 GLU n 1 138 THR n 1 139 GLY n 1 140 ILE n 1 141 LEU n 1 142 CYS n 1 143 ARG n 1 144 CYS n 1 145 ARG n 1 146 PRO n 1 147 ASP n 1 148 LYS n 1 149 ILE n 1 150 ILE n 1 151 PRO n 1 152 GLU n 1 153 PHE n 1 154 HIS n 1 155 TRP n 1 156 ILE n 1 157 MET n 1 158 ASP n 1 159 VAL n 1 160 LYS n 1 161 THR n 1 162 THR n 1 163 ALA n 1 164 ASP n 1 165 ILE n 1 166 GLN n 1 167 ARG n 1 168 PHE n 1 169 LYS n 1 170 THR n 1 171 ALA n 1 172 TYR n 1 173 TYR n 1 174 ASP n 1 175 TYR n 1 176 ARG n 1 177 TYR n 1 178 HIS n 1 179 VAL n 1 180 GLN n 1 181 ASP n 1 182 ALA n 1 183 PHE n 1 184 TYR n 1 185 SER n 1 186 ASP n 1 187 GLY n 1 188 TYR n 1 189 GLU n 1 190 ALA n 1 191 GLN n 1 192 PHE n 1 193 GLY n 1 194 VAL n 1 195 GLN n 1 196 PRO n 1 197 THR n 1 198 PHE n 1 199 VAL n 1 200 PHE n 1 201 LEU n 1 202 VAL n 1 203 ALA n 1 204 SER n 1 205 THR n 1 206 THR n 1 207 ILE n 1 208 GLU n 1 209 CYS n 1 210 GLY n 1 211 ARG n 1 212 TYR n 1 213 PRO n 1 214 VAL n 1 215 GLU n 1 216 ILE n 1 217 PHE n 1 218 MET n 1 219 MET n 1 220 GLY n 1 221 GLU n 1 222 GLU n 1 223 ALA n 1 224 LYS n 1 225 LEU n 1 226 ALA n 1 227 GLY n 1 228 GLN n 1 229 GLN n 1 230 GLU n 1 231 TYR n 1 232 HIS n 1 233 ARG n 1 234 ASN n 1 235 LEU n 1 236 ARG n 1 237 THR n 1 238 LEU n 1 239 SER n 1 240 ASP n 1 241 CYS n 1 242 LEU n 1 243 ASN n 1 244 THR n 1 245 ASP n 1 246 GLU n 1 247 TRP n 1 248 PRO n 1 249 ALA n 1 250 ILE n 1 251 LYS n 1 252 THR n 1 253 LEU n 1 254 SER n 1 255 LEU n 1 256 PRO n 1 257 ARG n 1 258 TRP n 1 259 ALA n 1 260 LYS n 1 261 GLU n 1 262 TYR n 1 263 ALA n 1 264 ASN n 1 265 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b1350, JW1344, recE' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(AI)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET14b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 MET 4 0 ? ? ? A . n A 1 5 GLU 5 606 ? ? ? A . n A 1 6 ASN 6 607 ? ? ? A . n A 1 7 TYR 7 608 ? ? ? A . n A 1 8 HIS 8 609 ? ? ? A . n A 1 9 ALA 9 610 ? ? ? A . n A 1 10 GLY 10 611 ? ? ? A . n A 1 11 PRO 11 612 612 PRO PRO A . n A 1 12 GLY 12 613 613 GLY GLY A . n A 1 13 ILE 13 614 614 ILE ILE A . n A 1 14 SER 14 615 615 SER SER A . n A 1 15 LYS 15 616 616 LYS LYS A . n A 1 16 SER 16 617 617 SER SER A . n A 1 17 GLN 17 618 618 GLN GLN A . n A 1 18 LEU 18 619 619 LEU LEU A . n A 1 19 ASP 19 620 620 ASP ASP A . n A 1 20 ASP 20 621 621 ASP ASP A . n A 1 21 ILE 21 622 622 ILE ILE A . n A 1 22 ALA 22 623 623 ALA ALA A . n A 1 23 ASP 23 624 624 ASP ASP A . n A 1 24 THR 24 625 625 THR THR A . n A 1 25 PRO 25 626 626 PRO PRO A . n A 1 26 ALA 26 627 627 ALA ALA A . n A 1 27 LEU 27 628 628 LEU LEU A . n A 1 28 TYR 28 629 629 TYR TYR A . n A 1 29 LEU 29 630 630 LEU LEU A . n A 1 30 TRP 30 631 631 TRP TRP A . n A 1 31 ARG 31 632 632 ARG ARG A . n A 1 32 LYS 32 633 633 LYS LYS A . n A 1 33 ASN 33 634 634 ASN ASN A . n A 1 34 ALA 34 635 635 ALA ALA A . n A 1 35 PRO 35 636 636 PRO PRO A . n A 1 36 VAL 36 637 637 VAL VAL A . n A 1 37 ASP 37 638 638 ASP ASP A . n A 1 38 THR 38 639 639 THR THR A . n A 1 39 THR 39 640 640 THR THR A . n A 1 40 LYS 40 641 641 LYS LYS A . n A 1 41 THR 41 642 642 THR THR A . n A 1 42 LYS 42 643 643 LYS LYS A . n A 1 43 THR 43 644 644 THR THR A . n A 1 44 LEU 44 645 645 LEU LEU A . n A 1 45 ASP 45 646 646 ASP ASP A . n A 1 46 LEU 46 647 647 LEU LEU A . n A 1 47 GLY 47 648 648 GLY GLY A . n A 1 48 THR 48 649 649 THR THR A . n A 1 49 ALA 49 650 650 ALA ALA A . n A 1 50 PHE 50 651 651 PHE PHE A . n A 1 51 HIS 51 652 652 HIS HIS A . n A 1 52 CYS 52 653 653 CYS CYS A . n A 1 53 ARG 53 654 654 ARG ARG A . n A 1 54 VAL 54 655 655 VAL VAL A . n A 1 55 LEU 55 656 656 LEU LEU A . n A 1 56 GLU 56 657 657 GLU GLU A . n A 1 57 LEU 57 658 658 LEU LEU A . n A 1 58 GLU 58 659 659 GLU GLU A . n A 1 59 GLU 59 660 660 GLU GLU A . n A 1 60 PHE 60 661 661 PHE PHE A . n A 1 61 SER 61 662 662 SER SER A . n A 1 62 ASN 62 663 663 ASN ASN A . n A 1 63 ARG 63 664 664 ARG ALA A . n A 1 64 PHE 64 665 ? ? ? A . n A 1 65 ILE 65 666 ? ? ? A . n A 1 66 VAL 66 667 ? ? ? A . n A 1 67 ALA 67 668 ? ? ? A . n A 1 68 PRO 68 669 ? ? ? A . n A 1 69 GLU 69 670 ? ? ? A . n A 1 70 PHE 70 671 ? ? ? A . n A 1 71 ASN 71 672 ? ? ? A . n A 1 72 ARG 72 673 ? ? ? A . n A 1 73 ARG 73 674 ? ? ? A . n A 1 74 THR 74 675 ? ? ? A . n A 1 75 ASN 75 676 ? ? ? A . n A 1 76 ALA 76 677 ? ? ? A . n A 1 77 GLY 77 678 ? ? ? A . n A 1 78 LYS 78 679 ? ? ? A . n A 1 79 GLU 79 680 ? ? ? A . n A 1 80 GLU 80 681 ? ? ? A . n A 1 81 GLU 81 682 ? ? ? A . n A 1 82 LYS 82 683 ? ? ? A . n A 1 83 ALA 83 684 ? ? ? A . n A 1 84 PHE 84 685 ? ? ? A . n A 1 85 LEU 85 686 ? ? ? A . n A 1 86 MET 86 687 ? ? ? A . n A 1 87 GLU 87 688 ? ? ? A . n A 1 88 CYS 88 689 ? ? ? A . n A 1 89 ALA 89 690 ? ? ? A . n A 1 90 SER 90 691 ? ? ? A . n A 1 91 THR 91 692 ? ? ? A . n A 1 92 GLY 92 693 ? ? ? A . n A 1 93 LYS 93 694 ? ? ? A . n A 1 94 THR 94 695 ? ? ? A . n A 1 95 VAL 95 696 ? ? ? A . n A 1 96 ILE 96 697 ? ? ? A . n A 1 97 THR 97 698 ? ? ? A . n A 1 98 ALA 98 699 699 ALA ALA A . n A 1 99 GLU 99 700 700 GLU GLU A . n A 1 100 GLU 100 701 701 GLU GLU A . n A 1 101 GLY 101 702 702 GLY GLY A . n A 1 102 ARG 102 703 703 ARG ARG A . n A 1 103 LYS 103 704 704 LYS LYS A . n A 1 104 ILE 104 705 705 ILE ILE A . n A 1 105 GLU 105 706 706 GLU GLU A . n A 1 106 LEU 106 707 707 LEU LEU A . n A 1 107 MET 107 708 708 MET MET A . n A 1 108 TYR 108 709 709 TYR TYR A . n A 1 109 GLN 109 710 710 GLN GLN A . n A 1 110 SER 110 711 711 SER SER A . n A 1 111 VAL 111 712 712 VAL VAL A . n A 1 112 MET 112 713 713 MET MET A . n A 1 113 ALA 113 714 714 ALA ALA A . n A 1 114 LEU 114 715 715 LEU LEU A . n A 1 115 PRO 115 716 716 PRO PRO A . n A 1 116 LEU 116 717 717 LEU LEU A . n A 1 117 GLY 117 718 718 GLY GLY A . n A 1 118 GLN 118 719 719 GLN GLN A . n A 1 119 TRP 119 720 720 TRP TRP A . n A 1 120 LEU 120 721 721 LEU LEU A . n A 1 121 VAL 121 722 722 VAL VAL A . n A 1 122 GLU 122 723 723 GLU GLU A . n A 1 123 SER 123 724 724 SER SER A . n A 1 124 ALA 124 725 725 ALA ALA A . n A 1 125 GLY 125 726 726 GLY GLY A . n A 1 126 HIS 126 727 727 HIS HIS A . n A 1 127 ALA 127 728 728 ALA ALA A . n A 1 128 GLU 128 729 729 GLU GLU A . n A 1 129 SER 129 730 730 SER SER A . n A 1 130 SER 130 731 731 SER SER A . n A 1 131 ILE 131 732 732 ILE ILE A . n A 1 132 TYR 132 733 733 TYR TYR A . n A 1 133 TRP 133 734 734 TRP TRP A . n A 1 134 GLU 134 735 735 GLU GLU A . n A 1 135 ASP 135 736 736 ASP ASP A . n A 1 136 PRO 136 737 737 PRO PRO A . n A 1 137 GLU 137 738 738 GLU GLU A . n A 1 138 THR 138 739 739 THR THR A . n A 1 139 GLY 139 740 740 GLY GLY A . n A 1 140 ILE 140 741 741 ILE ILE A . n A 1 141 LEU 141 742 742 LEU LEU A . n A 1 142 CYS 142 743 743 CYS CYS A . n A 1 143 ARG 143 744 744 ARG ARG A . n A 1 144 CYS 144 745 745 CYS CYS A . n A 1 145 ARG 145 746 746 ARG ARG A . n A 1 146 PRO 146 747 747 PRO PRO A . n A 1 147 ASP 147 748 748 ASP ASP A . n A 1 148 LYS 148 749 749 LYS LYS A . n A 1 149 ILE 149 750 750 ILE ILE A . n A 1 150 ILE 150 751 751 ILE ILE A . n A 1 151 PRO 151 752 752 PRO PRO A . n A 1 152 GLU 152 753 753 GLU GLU A . n A 1 153 PHE 153 754 754 PHE PHE A . n A 1 154 HIS 154 755 755 HIS HIS A . n A 1 155 TRP 155 756 756 TRP TRP A . n A 1 156 ILE 156 757 757 ILE ILE A . n A 1 157 MET 157 758 758 MET MET A . n A 1 158 ASP 158 759 759 ASP ASP A . n A 1 159 VAL 159 760 760 VAL VAL A . n A 1 160 LYS 160 761 761 LYS LYS A . n A 1 161 THR 161 762 762 THR THR A . n A 1 162 THR 162 763 763 THR THR A . n A 1 163 ALA 163 764 764 ALA ALA A . n A 1 164 ASP 164 765 765 ASP ASP A . n A 1 165 ILE 165 766 766 ILE ILE A . n A 1 166 GLN 166 767 767 GLN GLN A . n A 1 167 ARG 167 768 768 ARG ARG A . n A 1 168 PHE 168 769 769 PHE PHE A . n A 1 169 LYS 169 770 770 LYS LYS A . n A 1 170 THR 170 771 771 THR THR A . n A 1 171 ALA 171 772 772 ALA ALA A . n A 1 172 TYR 172 773 773 TYR TYR A . n A 1 173 TYR 173 774 774 TYR TYR A . n A 1 174 ASP 174 775 775 ASP ASP A . n A 1 175 TYR 175 776 776 TYR TYR A . n A 1 176 ARG 176 777 777 ARG ARG A . n A 1 177 TYR 177 778 778 TYR TYR A . n A 1 178 HIS 178 779 779 HIS HIS A . n A 1 179 VAL 179 780 780 VAL VAL A . n A 1 180 GLN 180 781 781 GLN GLN A . n A 1 181 ASP 181 782 782 ASP ASP A . n A 1 182 ALA 182 783 783 ALA ALA A . n A 1 183 PHE 183 784 784 PHE PHE A . n A 1 184 TYR 184 785 785 TYR TYR A . n A 1 185 SER 185 786 786 SER SER A . n A 1 186 ASP 186 787 787 ASP ASP A . n A 1 187 GLY 187 788 788 GLY GLY A . n A 1 188 TYR 188 789 789 TYR TYR A . n A 1 189 GLU 189 790 790 GLU GLU A . n A 1 190 ALA 190 791 791 ALA ALA A . n A 1 191 GLN 191 792 792 GLN GLN A . n A 1 192 PHE 192 793 793 PHE PHE A . n A 1 193 GLY 193 794 794 GLY GLY A . n A 1 194 VAL 194 795 795 VAL VAL A . n A 1 195 GLN 195 796 796 GLN GLN A . n A 1 196 PRO 196 797 797 PRO PRO A . n A 1 197 THR 197 798 798 THR THR A . n A 1 198 PHE 198 799 799 PHE PHE A . n A 1 199 VAL 199 800 800 VAL VAL A . n A 1 200 PHE 200 801 801 PHE PHE A . n A 1 201 LEU 201 802 802 LEU LEU A . n A 1 202 VAL 202 803 803 VAL VAL A . n A 1 203 ALA 203 804 804 ALA ALA A . n A 1 204 SER 204 805 805 SER SER A . n A 1 205 THR 205 806 806 THR THR A . n A 1 206 THR 206 807 807 THR THR A . n A 1 207 ILE 207 808 808 ILE ILE A . n A 1 208 GLU 208 809 809 GLU GLU A . n A 1 209 CYS 209 810 810 CYS CYS A . n A 1 210 GLY 210 811 811 GLY GLY A . n A 1 211 ARG 211 812 812 ARG ARG A . n A 1 212 TYR 212 813 813 TYR TYR A . n A 1 213 PRO 213 814 814 PRO PRO A . n A 1 214 VAL 214 815 815 VAL VAL A . n A 1 215 GLU 215 816 816 GLU GLU A . n A 1 216 ILE 216 817 817 ILE ILE A . n A 1 217 PHE 217 818 818 PHE PHE A . n A 1 218 MET 218 819 819 MET MET A . n A 1 219 MET 219 820 820 MET MET A . n A 1 220 GLY 220 821 821 GLY GLY A . n A 1 221 GLU 221 822 822 GLU GLU A . n A 1 222 GLU 222 823 823 GLU GLU A . n A 1 223 ALA 223 824 824 ALA ALA A . n A 1 224 LYS 224 825 825 LYS LYS A . n A 1 225 LEU 225 826 826 LEU LEU A . n A 1 226 ALA 226 827 827 ALA ALA A . n A 1 227 GLY 227 828 828 GLY GLY A . n A 1 228 GLN 228 829 829 GLN GLN A . n A 1 229 GLN 229 830 830 GLN GLN A . n A 1 230 GLU 230 831 831 GLU GLU A . n A 1 231 TYR 231 832 832 TYR TYR A . n A 1 232 HIS 232 833 833 HIS HIS A . n A 1 233 ARG 233 834 834 ARG ARG A . n A 1 234 ASN 234 835 835 ASN ASN A . n A 1 235 LEU 235 836 836 LEU LEU A . n A 1 236 ARG 236 837 837 ARG ARG A . n A 1 237 THR 237 838 838 THR THR A . n A 1 238 LEU 238 839 839 LEU LEU A . n A 1 239 SER 239 840 840 SER SER A . n A 1 240 ASP 240 841 841 ASP ASP A . n A 1 241 CYS 241 842 842 CYS CYS A . n A 1 242 LEU 242 843 843 LEU LEU A . n A 1 243 ASN 243 844 844 ASN ASN A . n A 1 244 THR 244 845 845 THR THR A . n A 1 245 ASP 245 846 846 ASP ASP A . n A 1 246 GLU 246 847 847 GLU GLU A . n A 1 247 TRP 247 848 848 TRP TRP A . n A 1 248 PRO 248 849 849 PRO PRO A . n A 1 249 ALA 249 850 850 ALA ALA A . n A 1 250 ILE 250 851 851 ILE ILE A . n A 1 251 LYS 251 852 852 LYS LYS A . n A 1 252 THR 252 853 853 THR THR A . n A 1 253 LEU 253 854 854 LEU LEU A . n A 1 254 SER 254 855 855 SER SER A . n A 1 255 LEU 255 856 856 LEU LEU A . n A 1 256 PRO 256 857 857 PRO PRO A . n A 1 257 ARG 257 858 858 ARG ARG A . n A 1 258 TRP 258 859 859 TRP TRP A . n A 1 259 ALA 259 860 860 ALA ALA A . n A 1 260 LYS 260 861 861 LYS LYS A . n A 1 261 GLU 261 862 862 GLU GLU A . n A 1 262 TYR 262 863 863 TYR TYR A . n A 1 263 ALA 263 864 864 ALA ALA A . n A 1 264 ASN 264 865 ? ? ? A . n A 1 265 ASP 265 866 ? ? ? A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 637 ? CG1 ? A VAL 36 CG1 2 1 Y 1 A VAL 637 ? CG2 ? A VAL 36 CG2 3 1 Y 1 A ASP 638 ? CG ? A ASP 37 CG 4 1 Y 1 A ASP 638 ? OD1 ? A ASP 37 OD1 5 1 Y 1 A ASP 638 ? OD2 ? A ASP 37 OD2 6 1 Y 1 A THR 639 ? OG1 ? A THR 38 OG1 7 1 Y 1 A THR 639 ? CG2 ? A THR 38 CG2 8 1 Y 1 A THR 640 ? OG1 ? A THR 39 OG1 9 1 Y 1 A THR 640 ? CG2 ? A THR 39 CG2 10 1 Y 1 A LYS 641 ? CG ? A LYS 40 CG 11 1 Y 1 A LYS 641 ? CD ? A LYS 40 CD 12 1 Y 1 A LYS 641 ? CE ? A LYS 40 CE 13 1 Y 1 A LYS 641 ? NZ ? A LYS 40 NZ 14 1 Y 1 A THR 642 ? OG1 ? A THR 41 OG1 15 1 Y 1 A THR 642 ? CG2 ? A THR 41 CG2 16 1 Y 1 A LYS 643 ? CG ? A LYS 42 CG 17 1 Y 1 A LYS 643 ? CD ? A LYS 42 CD 18 1 Y 1 A LYS 643 ? CE ? A LYS 42 CE 19 1 Y 1 A LYS 643 ? NZ ? A LYS 42 NZ 20 1 Y 1 A THR 644 ? OG1 ? A THR 43 OG1 21 1 Y 1 A THR 644 ? CG2 ? A THR 43 CG2 22 1 Y 1 A LEU 645 ? CG ? A LEU 44 CG 23 1 Y 1 A LEU 645 ? CD1 ? A LEU 44 CD1 24 1 Y 1 A LEU 645 ? CD2 ? A LEU 44 CD2 25 1 Y 1 A ASP 646 ? CG ? A ASP 45 CG 26 1 Y 1 A ASP 646 ? OD1 ? A ASP 45 OD1 27 1 Y 1 A ASP 646 ? OD2 ? A ASP 45 OD2 28 1 Y 1 A ARG 664 ? CG ? A ARG 63 CG 29 1 Y 1 A ARG 664 ? CD ? A ARG 63 CD 30 1 Y 1 A ARG 664 ? NE ? A ARG 63 NE 31 1 Y 1 A ARG 664 ? CZ ? A ARG 63 CZ 32 1 Y 1 A ARG 664 ? NH1 ? A ARG 63 NH1 33 1 Y 1 A ARG 664 ? NH2 ? A ARG 63 NH2 34 1 Y 1 A GLU 700 ? CG ? A GLU 99 CG 35 1 Y 1 A GLU 700 ? CD ? A GLU 99 CD 36 1 Y 1 A GLU 700 ? OE1 ? A GLU 99 OE1 37 1 Y 1 A GLU 700 ? OE2 ? A GLU 99 OE2 38 1 Y 1 A GLU 701 ? CG ? A GLU 100 CG 39 1 Y 1 A GLU 701 ? CD ? A GLU 100 CD 40 1 Y 1 A GLU 701 ? OE1 ? A GLU 100 OE1 41 1 Y 1 A GLU 701 ? OE2 ? A GLU 100 OE2 42 1 Y 1 A LYS 704 ? CG ? A LYS 103 CG 43 1 Y 1 A LYS 704 ? CD ? A LYS 103 CD 44 1 Y 1 A LYS 704 ? CE ? A LYS 103 CE 45 1 Y 1 A LYS 704 ? NZ ? A LYS 103 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' CCD ? 1 PHENIX 'model building' . ? 2 CNS refinement 1.2 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 3H4R _cell.length_a 123.200 _cell.length_b 123.200 _cell.length_c 67.260 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3H4R _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3H4R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.20 _exptl_crystal.density_percent_sol 70.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '30-42% Glycerol, 100 mM DL-malic acid, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-12-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Kohzu HLD-4 Diamond(111) Double Crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 # _reflns.entry_id 3H4R _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.80 _reflns.number_obs 13172 _reflns.number_all 13172 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.080 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.6 _reflns.B_iso_Wilson_estimate 33.1 _reflns.pdbx_redundancy 23.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.700 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 23.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3H4R _refine.ls_number_reflns_obs 13172 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 3811437.52 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.43 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_obs 0.290 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.290 _refine.ls_R_factor_R_free 0.313 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 656 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 97.3 _refine.aniso_B[1][1] -25.55 _refine.aniso_B[2][2] -25.55 _refine.aniso_B[3][3] 51.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 65.5675 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3H4R _refine_analyze.Luzzati_coordinate_error_obs 0.52 _refine_analyze.Luzzati_sigma_a_obs 0.83 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.58 _refine_analyze.Luzzati_sigma_a_free 0.99 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1736 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1736 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 45.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.89 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.48 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.59 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.67 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.69 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 2028 _refine_ls_shell.R_factor_R_work 0.476 _refine_ls_shell.percent_reflns_obs 99.9 _refine_ls_shell.R_factor_R_free 0.473 _refine_ls_shell.R_factor_R_free_error 0.045 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file protein_rep.param _pdbx_xplor_file.topol_file protein.top _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3H4R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3H4R _struct.title 'Crystal structure of E. coli RecE exonuclease' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3H4R _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Exonuclease, Recombination, Hydrolase, Nuclease' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RECE_ECOLI _struct_ref.pdbx_db_accession P15032 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEEFSNRFIVAPEFNRRTNAGKEEEKAF LMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTAD IQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSDCLNT DEWPAIKTLSLPRWAKEYAND ; _struct_ref.pdbx_align_begin 606 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3H4R _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15032 _struct_ref_seq.db_align_beg 606 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 866 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 606 _struct_ref_seq.pdbx_auth_seq_align_end 866 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3H4R GLY A 1 ? UNP P15032 ? ? 'expression tag' -3 1 1 3H4R SER A 2 ? UNP P15032 ? ? 'expression tag' -2 2 1 3H4R HIS A 3 ? UNP P15032 ? ? 'expression tag' -1 3 1 3H4R MET A 4 ? UNP P15032 ? ? 'expression tag' 0 4 1 3H4R LEU A 57 ? UNP P15032 PRO 658 'engineered mutation' 658 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10840 ? 1 MORE -59.7 ? 1 'SSA (A^2)' 41690 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -123.2000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_445 -y-1/2,x-1/2,z 0.0000000000 -1.0000000000 0.0000000000 -61.6000000000 1.0000000000 0.0000000000 0.0000000000 -61.6000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_545 y+1/2,-x-1/2,z 0.0000000000 1.0000000000 0.0000000000 61.6000000000 -1.0000000000 0.0000000000 0.0000000000 -61.6000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 14 ? THR A 24 ? SER A 615 THR A 625 1 ? 11 HELX_P HELX_P2 2 THR A 24 ? LYS A 32 ? THR A 625 LYS A 633 1 ? 9 HELX_P HELX_P3 3 ASP A 45 ? LEU A 55 ? ASP A 646 LEU A 656 1 ? 11 HELX_P HELX_P4 4 GLU A 56 ? SER A 61 ? GLU A 657 SER A 662 1 ? 6 HELX_P HELX_P5 5 ARG A 102 ? MET A 112 ? ARG A 703 MET A 713 1 ? 11 HELX_P HELX_P6 6 LEU A 114 ? GLU A 122 ? LEU A 715 GLU A 723 1 ? 9 HELX_P HELX_P7 7 PRO A 151 ? PHE A 153 ? PRO A 752 PHE A 754 5 ? 3 HELX_P HELX_P8 8 ASP A 164 ? TYR A 172 ? ASP A 765 TYR A 773 1 ? 9 HELX_P HELX_P9 9 TYR A 173 ? TYR A 175 ? TYR A 774 TYR A 776 5 ? 3 HELX_P HELX_P10 10 HIS A 178 ? GLY A 193 ? HIS A 779 GLY A 794 1 ? 16 HELX_P HELX_P11 11 GLY A 220 ? THR A 244 ? GLY A 821 THR A 845 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 131 ? GLU A 134 ? ILE A 732 GLU A 735 A 2 LEU A 141 ? CYS A 144 ? LEU A 742 CYS A 745 B 1 LYS A 148 ? ILE A 150 ? LYS A 749 ILE A 751 B 2 TRP A 155 ? THR A 162 ? TRP A 756 THR A 763 B 3 THR A 197 ? SER A 204 ? THR A 798 SER A 805 B 4 VAL A 214 ? MET A 218 ? VAL A 815 MET A 819 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 133 ? N TRP A 734 O CYS A 142 ? O CYS A 743 B 1 2 N ILE A 150 ? N ILE A 751 O TRP A 155 ? O TRP A 756 B 2 3 N ILE A 156 ? N ILE A 757 O THR A 197 ? O THR A 798 B 3 4 N PHE A 200 ? N PHE A 801 O PHE A 217 ? O PHE A 818 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 626 ? ? -37.52 -38.35 2 1 LEU A 628 ? ? -49.67 -13.42 3 1 LYS A 633 ? ? -78.27 49.80 4 1 ASN A 634 ? ? -173.78 -46.68 5 1 THR A 639 ? ? -48.08 87.49 6 1 THR A 640 ? ? -163.49 54.07 7 1 LYS A 641 ? ? -54.89 86.77 8 1 LYS A 643 ? ? 177.50 -30.44 9 1 ASP A 646 ? ? -67.49 34.42 10 1 LEU A 656 ? ? -89.44 -75.72 11 1 ASN A 663 ? ? -91.25 -152.24 12 1 GLU A 723 ? ? -83.72 -115.32 13 1 SER A 724 ? ? 46.03 -169.62 14 1 ALA A 728 ? ? -101.49 -107.76 15 1 GLU A 729 ? ? -60.42 7.25 16 1 LYS A 770 ? ? -34.09 -10.92 17 1 ALA A 791 ? ? -64.71 50.41 18 1 GLN A 792 ? ? 175.27 -19.89 19 1 THR A 806 ? ? -104.55 51.32 20 1 THR A 807 ? ? -164.75 79.60 21 1 ILE A 808 ? ? -35.90 143.06 22 1 GLU A 822 ? ? -29.89 -49.20 23 1 ASP A 846 ? ? 13.72 27.07 24 1 LEU A 856 ? ? -37.54 143.27 25 1 GLU A 862 ? ? -58.63 8.58 26 1 TYR A 863 ? ? 176.15 96.42 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 863 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.069 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A MET 0 ? A MET 4 5 1 Y 1 A GLU 606 ? A GLU 5 6 1 Y 1 A ASN 607 ? A ASN 6 7 1 Y 1 A TYR 608 ? A TYR 7 8 1 Y 1 A HIS 609 ? A HIS 8 9 1 Y 1 A ALA 610 ? A ALA 9 10 1 Y 1 A GLY 611 ? A GLY 10 11 1 Y 1 A PHE 665 ? A PHE 64 12 1 Y 1 A ILE 666 ? A ILE 65 13 1 Y 1 A VAL 667 ? A VAL 66 14 1 Y 1 A ALA 668 ? A ALA 67 15 1 Y 1 A PRO 669 ? A PRO 68 16 1 Y 1 A GLU 670 ? A GLU 69 17 1 Y 1 A PHE 671 ? A PHE 70 18 1 Y 1 A ASN 672 ? A ASN 71 19 1 Y 1 A ARG 673 ? A ARG 72 20 1 Y 1 A ARG 674 ? A ARG 73 21 1 Y 1 A THR 675 ? A THR 74 22 1 Y 1 A ASN 676 ? A ASN 75 23 1 Y 1 A ALA 677 ? A ALA 76 24 1 Y 1 A GLY 678 ? A GLY 77 25 1 Y 1 A LYS 679 ? A LYS 78 26 1 Y 1 A GLU 680 ? A GLU 79 27 1 Y 1 A GLU 681 ? A GLU 80 28 1 Y 1 A GLU 682 ? A GLU 81 29 1 Y 1 A LYS 683 ? A LYS 82 30 1 Y 1 A ALA 684 ? A ALA 83 31 1 Y 1 A PHE 685 ? A PHE 84 32 1 Y 1 A LEU 686 ? A LEU 85 33 1 Y 1 A MET 687 ? A MET 86 34 1 Y 1 A GLU 688 ? A GLU 87 35 1 Y 1 A CYS 689 ? A CYS 88 36 1 Y 1 A ALA 690 ? A ALA 89 37 1 Y 1 A SER 691 ? A SER 90 38 1 Y 1 A THR 692 ? A THR 91 39 1 Y 1 A GLY 693 ? A GLY 92 40 1 Y 1 A LYS 694 ? A LYS 93 41 1 Y 1 A THR 695 ? A THR 94 42 1 Y 1 A VAL 696 ? A VAL 95 43 1 Y 1 A ILE 697 ? A ILE 96 44 1 Y 1 A THR 698 ? A THR 97 45 1 Y 1 A ASN 865 ? A ASN 264 46 1 Y 1 A ASP 866 ? A ASP 265 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _atom_sites.entry_id 3H4R _atom_sites.fract_transf_matrix[1][1] 0.008117 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008117 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014868 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_