HEADER PROTEIN BINDING 21-APR-09 3H51 TITLE CRYSTAL STRUCTURE OF PUTATIVE CALCIUM/CALMODULIN DEPENDENT PROTEIN TITLE 2 KINASE II ASSOCIATION DOMAIN (NP_636218.1) FROM XANTHOMONAS TITLE 3 CAMPESTRIS AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CALCIUM/CALMODULIN DEPENDENT PROTEIN KINASE II COMPND 3 ASSOCIATION DOMAIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 GENE: NP_636218.1, XCC0827; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_636218.1, PUTATIVE CALCIUM/CALMODULIN DEPENDENT PROTEIN KINASE II KEYWDS 2 ASSOCIATION DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 4 FUNCTION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3H51 1 REMARK SEQADV REVDAT 4 24-JUL-19 3H51 1 REMARK LINK REVDAT 3 25-OCT-17 3H51 1 REMARK REVDAT 2 13-JUL-11 3H51 1 VERSN REVDAT 1 05-MAY-09 3H51 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE CALCIUM/CALMODULIN DEPENDENT JRNL TITL 2 PROTEIN KINASE II ASSOCIATION DOMAIN (NP_636218.1) FROM JRNL TITL 3 XANTHOMONAS CAMPESTRIS AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 33842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2358 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.97000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2418 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1592 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3306 ; 1.669 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3886 ; 0.980 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 7.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;38.421 ;23.981 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;13.031 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.005 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2783 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 499 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 472 ; 0.260 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1724 ; 0.212 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1157 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1248 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.031 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.278 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.400 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1619 ; 2.202 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 599 ; 0.578 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2446 ; 3.029 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1018 ; 4.993 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 860 ; 6.291 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 24 A 160 6 REMARK 3 1 B 24 B 160 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1688 ; 0.330 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1688 ; 2.920 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9376 5.0806 3.7603 REMARK 3 T TENSOR REMARK 3 T11: -0.0422 T22: -0.0473 REMARK 3 T33: -0.0422 T12: 0.0044 REMARK 3 T13: -0.0031 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.9118 L22: 0.9266 REMARK 3 L33: 3.0550 L12: 0.2530 REMARK 3 L13: -1.1847 L23: -0.7348 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: 0.2497 S13: 0.1333 REMARK 3 S21: -0.1418 S22: 0.1255 S23: 0.1253 REMARK 3 S31: -0.1715 S32: -0.2101 S33: -0.2439 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6457 0.1126 22.1165 REMARK 3 T TENSOR REMARK 3 T11: -0.0659 T22: -0.0131 REMARK 3 T33: -0.0495 T12: -0.0383 REMARK 3 T13: -0.0147 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.0732 L22: 0.7776 REMARK 3 L33: 2.4175 L12: -0.5135 REMARK 3 L13: -0.7693 L23: 0.0696 REMARK 3 S TENSOR REMARK 3 S11: 0.0800 S12: -0.1941 S13: 0.0079 REMARK 3 S21: 0.0832 S22: 0.0189 S23: -0.0292 REMARK 3 S31: -0.0801 S32: 0.2807 S33: -0.0989 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. PEG AND REMARK 3 PG4 MOLECULES (FRAGMENTS OF PEG1000 AND PEG200) USED IN THE REMARK 3 CRYSTALLIZATION AND CRYOPROTECTION CONDITION HAVE BEEN MODELED. REMARK 3 5. ELECTRON DENSITIES OF RESIDUES OF 30-34 AND 108-112 IN BOTH A REMARK 3 AND B CHAINS ARE POOR AND MODELS ARE NOT RELIABLE IN THIS REMARK 3 REGION. 6. AN UNIDENTIFIED LIGAND (UNL) HAS BEEN MODELED AT THE REMARK 3 PUTATIVE ACTIVE SITE OF BOTH A AND B CHAINS. REMARK 4 REMARK 4 3H51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000052700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97901 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33865 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.488 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 6.4640 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : 0.66500 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0000% PEG-1000, 0.1M TRIS PH 8.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.27500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 20 REMARK 465 THR A 163 REMARK 465 ALA A 164 REMARK 465 THR A 165 REMARK 465 ALA A 166 REMARK 465 THR A 167 REMARK 465 ALA A 168 REMARK 465 ALA A 169 REMARK 465 VAL A 170 REMARK 465 THR A 171 REMARK 465 LYS A 172 REMARK 465 ALA A 173 REMARK 465 LYS A 174 REMARK 465 GLY B 0 REMARK 465 GLY B 20 REMARK 465 GLY B 21 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 ALA B 164 REMARK 465 THR B 165 REMARK 465 ALA B 166 REMARK 465 THR B 167 REMARK 465 ALA B 168 REMARK 465 ALA B 169 REMARK 465 VAL B 170 REMARK 465 THR B 171 REMARK 465 LYS B 172 REMARK 465 ALA B 173 REMARK 465 LYS B 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 34 CG OD1 OD2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 ASP A 110 CG OD1 OD2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ASN A 127 CG OD1 ND2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 147 CD CE NZ REMARK 470 LYS B 28 NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 GLU B 82 CD OE1 OE2 REMARK 470 ASP B 110 CG OD1 OD2 REMARK 470 LYS B 129 CE NZ REMARK 470 LYS B 147 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 27 CB - CG - OD1 ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 -81.64 -96.82 REMARK 500 ASP A 109 -150.45 -78.78 REMARK 500 PRO B 32 99.05 -61.93 REMARK 500 PRO B 32 99.05 -59.98 REMARK 500 ALA B 33 -16.61 -43.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 179 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396520 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 20-174) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3H51 A 20 174 UNP Q8PCA7 Q8PCA7_XANCP 20 174 DBREF 3H51 B 20 174 UNP Q8PCA7 Q8PCA7_XANCP 20 174 SEQADV 3H51 GLY A 0 UNP Q8PCA7 EXPRESSION TAG SEQADV 3H51 GLY B 0 UNP Q8PCA7 EXPRESSION TAG SEQRES 1 A 156 GLY GLY GLY VAL MSE HIS TYR THR ASP LYS ALA ALA LEU SEQRES 2 A 156 PRO ALA ASP GLY GLU ALA ARG GLU VAL ALA ALA LEU PHE SEQRES 3 A 156 ASP THR TRP ASN ALA ALA LEU ALA THR GLY ASN PRO HIS SEQRES 4 A 156 LYS VAL ALA ASP LEU TYR ALA PRO ASP GLY VAL LEU LEU SEQRES 5 A 156 PRO THR VAL SER ASN GLU VAL ARG ALA SER ARG GLU GLN SEQRES 6 A 156 ILE GLU ASN TYR PHE GLU MSE PHE LEU THR LYS LYS PRO SEQRES 7 A 156 LYS GLY VAL ILE ASN TYR ARG THR VAL ARG LEU LEU ASP SEQRES 8 A 156 ASP ASP SER ALA VAL ASP ALA GLY VAL TYR THR PHE THR SEQRES 9 A 156 LEU THR ASP LYS ASN GLY LYS LYS SER ASP VAL GLN ALA SEQRES 10 A 156 ARG TYR THR PHE VAL TYR GLU LYS ARG ASP GLY LYS TRP SEQRES 11 A 156 LEU ILE ILE ASN HIS HIS SER SER ALA MSE PRO GLU VAL SEQRES 12 A 156 ASP THR ALA THR ALA THR ALA ALA VAL THR LYS ALA LYS SEQRES 1 B 156 GLY GLY GLY VAL MSE HIS TYR THR ASP LYS ALA ALA LEU SEQRES 2 B 156 PRO ALA ASP GLY GLU ALA ARG GLU VAL ALA ALA LEU PHE SEQRES 3 B 156 ASP THR TRP ASN ALA ALA LEU ALA THR GLY ASN PRO HIS SEQRES 4 B 156 LYS VAL ALA ASP LEU TYR ALA PRO ASP GLY VAL LEU LEU SEQRES 5 B 156 PRO THR VAL SER ASN GLU VAL ARG ALA SER ARG GLU GLN SEQRES 6 B 156 ILE GLU ASN TYR PHE GLU MSE PHE LEU THR LYS LYS PRO SEQRES 7 B 156 LYS GLY VAL ILE ASN TYR ARG THR VAL ARG LEU LEU ASP SEQRES 8 B 156 ASP ASP SER ALA VAL ASP ALA GLY VAL TYR THR PHE THR SEQRES 9 B 156 LEU THR ASP LYS ASN GLY LYS LYS SER ASP VAL GLN ALA SEQRES 10 B 156 ARG TYR THR PHE VAL TYR GLU LYS ARG ASP GLY LYS TRP SEQRES 11 B 156 LEU ILE ILE ASN HIS HIS SER SER ALA MSE PRO GLU VAL SEQRES 12 B 156 ASP THR ALA THR ALA THR ALA ALA VAL THR LYS ALA LYS MODRES 3H51 MSE A 23 MET SELENOMETHIONINE MODRES 3H51 MSE A 90 MET SELENOMETHIONINE MODRES 3H51 MSE A 158 MET SELENOMETHIONINE MODRES 3H51 MSE B 23 MET SELENOMETHIONINE MODRES 3H51 MSE B 90 MET SELENOMETHIONINE MODRES 3H51 MSE B 158 MET SELENOMETHIONINE HET MSE A 23 8 HET MSE A 90 24 HET MSE A 158 16 HET MSE B 23 8 HET MSE B 90 16 HET MSE B 158 16 HET UNL A 175 3 HET UNL B 176 3 HET PEG B 177 7 HET PEG B 178 7 HET PG4 B 179 13 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 PG4 C8 H18 O5 FORMUL 8 HOH *251(H2 O) HELIX 1 1 GLY A 35 GLY A 54 1 20 HELIX 2 2 ASN A 55 ASP A 61 1 7 HELIX 3 3 SER A 80 LEU A 92 1 13 HELIX 4 4 THR A 93 LYS A 95 5 3 HELIX 5 5 GLY B 35 THR B 53 1 19 HELIX 6 6 ASN B 55 ASP B 61 1 7 HELIX 7 7 SER B 80 LEU B 92 1 13 HELIX 8 8 THR B 93 LYS B 95 5 3 SHEET 1 A 5 TYR A 63 LEU A 70 0 SHEET 2 A 5 LYS A 147 ALA A 157 1 O HIS A 153 N LEU A 70 SHEET 3 A 5 LYS A 130 ARG A 144 -1 N VAL A 140 O ILE A 151 SHEET 4 A 5 SER A 112 THR A 124 -1 N ASP A 115 O PHE A 139 SHEET 5 A 5 LYS A 97 LEU A 107 -1 N ASN A 101 O VAL A 118 SHEET 1 B 5 TYR B 63 LEU B 70 0 SHEET 2 B 5 LYS B 147 ALA B 157 1 O HIS B 153 N LEU B 70 SHEET 3 B 5 LYS B 130 ARG B 144 -1 N ARG B 144 O LYS B 147 SHEET 4 B 5 SER B 112 THR B 124 -1 N LEU B 123 O SER B 131 SHEET 5 B 5 LYS B 97 ASP B 109 -1 N LYS B 97 O THR B 122 LINK C VAL A 22 N MSE A 23 1555 1555 1.33 LINK C MSE A 23 N HIS A 24 1555 1555 1.33 LINK C GLU A 89 N AMSE A 90 1555 1555 1.34 LINK C GLU A 89 N BMSE A 90 1555 1555 1.33 LINK C GLU A 89 N CMSE A 90 1555 1555 1.33 LINK C AMSE A 90 N PHE A 91 1555 1555 1.33 LINK C BMSE A 90 N PHE A 91 1555 1555 1.34 LINK C CMSE A 90 N PHE A 91 1555 1555 1.33 LINK C ALA A 157 N AMSE A 158 1555 1555 1.34 LINK C ALA A 157 N BMSE A 158 1555 1555 1.32 LINK C AMSE A 158 N PRO A 159 1555 1555 1.33 LINK C BMSE A 158 N PRO A 159 1555 1555 1.36 LINK C VAL B 22 N MSE B 23 1555 1555 1.34 LINK C MSE B 23 N HIS B 24 1555 1555 1.33 LINK C AGLU B 89 N AMSE B 90 1555 1555 1.35 LINK C BGLU B 89 N BMSE B 90 1555 1555 1.34 LINK C AMSE B 90 N PHE B 91 1555 1555 1.33 LINK C BMSE B 90 N PHE B 91 1555 1555 1.33 LINK C ALA B 157 N AMSE B 158 1555 1555 1.33 LINK C ALA B 157 N BMSE B 158 1555 1555 1.33 LINK C AMSE B 158 N PRO B 159 1555 1555 1.35 LINK C BMSE B 158 N PRO B 159 1555 1555 1.35 SITE 1 AC1 4 PRO A 71 THR A 72 TYR A 87 SER A 155 SITE 1 AC2 5 PRO B 71 THR B 72 TYR B 87 HIS B 153 SITE 2 AC2 5 SER B 155 SITE 1 AC3 2 ASN B 127 HOH B 314 SITE 1 AC4 4 LYS A 28 PRO A 65 ASP A 66 ARG B 106 SITE 1 AC5 3 VAL B 73 LYS B 94 LEU B 123 CRYST1 38.832 80.550 51.431 90.00 95.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025752 0.000000 0.002520 0.00000 SCALE2 0.000000 0.012415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019536 0.00000