data_3H9O # _entry.id 3H9O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3H9O RCSB RCSB052867 WWPDB D_1000052867 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3H9O _pdbx_database_status.recvd_initial_deposition_date 2009-04-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # _audit_author.name 'Olland, A.M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Benzo[c][2,7]naphthyridines as inhibitors of PDK-1' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 19 _citation.page_first 5225 _citation.page_last 5228 _citation.year 2009 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 0960-894X _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19628388 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2009.07.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, K.H.' 1 primary 'Wissner, A.' 2 primary 'Floyd, M.B.' 3 primary 'Fraser, H.L.' 4 primary 'Wang, Y.D.' 5 primary 'Dushin, R.G.' 6 primary 'Hu, Y.' 7 primary 'Olland, A.' 8 primary 'Guo, B.' 9 primary 'Arndt, K.' 10 # _cell.entry_id 3H9O _cell.length_a 123.770 _cell.length_b 123.770 _cell.length_c 47.116 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3H9O _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat '3-phosphoinositide-dependent protein kinase 1' 35581.773 1 2.7.11.1 ? ? ? 2 non-polymer syn '2-(1H-imidazol-1-yl)-9-methoxy-8-(2-methoxyethoxy)benzo[c][2,7]naphthyridin-4-amine' 365.386 1 ? ? ? ? 3 water nat water 18.015 99 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name hPDK1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPMDGTAAEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVT RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKP ENILLNEDMHIQITDFGTAKVLSPESKQARAN(SEP)FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA GNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT ; _entity_poly.pdbx_seq_one_letter_code_can ;GPMDGTAAEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVT RERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKP ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEY LIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 MET n 1 4 ASP n 1 5 GLY n 1 6 THR n 1 7 ALA n 1 8 ALA n 1 9 GLU n 1 10 PRO n 1 11 ARG n 1 12 PRO n 1 13 GLY n 1 14 ALA n 1 15 GLY n 1 16 SER n 1 17 LEU n 1 18 GLN n 1 19 HIS n 1 20 ALA n 1 21 GLN n 1 22 PRO n 1 23 PRO n 1 24 PRO n 1 25 GLN n 1 26 PRO n 1 27 ARG n 1 28 LYS n 1 29 LYS n 1 30 ARG n 1 31 PRO n 1 32 GLU n 1 33 ASP n 1 34 PHE n 1 35 LYS n 1 36 PHE n 1 37 GLY n 1 38 LYS n 1 39 ILE n 1 40 LEU n 1 41 GLY n 1 42 GLU n 1 43 GLY n 1 44 SER n 1 45 PHE n 1 46 SER n 1 47 THR n 1 48 VAL n 1 49 VAL n 1 50 LEU n 1 51 ALA n 1 52 ARG n 1 53 GLU n 1 54 LEU n 1 55 ALA n 1 56 THR n 1 57 SER n 1 58 ARG n 1 59 GLU n 1 60 TYR n 1 61 ALA n 1 62 ILE n 1 63 LYS n 1 64 ILE n 1 65 LEU n 1 66 GLU n 1 67 LYS n 1 68 ARG n 1 69 HIS n 1 70 ILE n 1 71 ILE n 1 72 LYS n 1 73 GLU n 1 74 ASN n 1 75 LYS n 1 76 VAL n 1 77 PRO n 1 78 TYR n 1 79 VAL n 1 80 THR n 1 81 ARG n 1 82 GLU n 1 83 ARG n 1 84 ASP n 1 85 VAL n 1 86 MET n 1 87 SER n 1 88 ARG n 1 89 LEU n 1 90 ASP n 1 91 HIS n 1 92 PRO n 1 93 PHE n 1 94 PHE n 1 95 VAL n 1 96 LYS n 1 97 LEU n 1 98 TYR n 1 99 PHE n 1 100 THR n 1 101 PHE n 1 102 GLN n 1 103 ASP n 1 104 ASP n 1 105 GLU n 1 106 LYS n 1 107 LEU n 1 108 TYR n 1 109 PHE n 1 110 GLY n 1 111 LEU n 1 112 SER n 1 113 TYR n 1 114 ALA n 1 115 LYS n 1 116 ASN n 1 117 GLY n 1 118 GLU n 1 119 LEU n 1 120 LEU n 1 121 LYS n 1 122 TYR n 1 123 ILE n 1 124 ARG n 1 125 LYS n 1 126 ILE n 1 127 GLY n 1 128 SER n 1 129 PHE n 1 130 ASP n 1 131 GLU n 1 132 THR n 1 133 CYS n 1 134 THR n 1 135 ARG n 1 136 PHE n 1 137 TYR n 1 138 THR n 1 139 ALA n 1 140 GLU n 1 141 ILE n 1 142 VAL n 1 143 SER n 1 144 ALA n 1 145 LEU n 1 146 GLU n 1 147 TYR n 1 148 LEU n 1 149 HIS n 1 150 GLY n 1 151 LYS n 1 152 GLY n 1 153 ILE n 1 154 ILE n 1 155 HIS n 1 156 ARG n 1 157 ASP n 1 158 LEU n 1 159 LYS n 1 160 PRO n 1 161 GLU n 1 162 ASN n 1 163 ILE n 1 164 LEU n 1 165 LEU n 1 166 ASN n 1 167 GLU n 1 168 ASP n 1 169 MET n 1 170 HIS n 1 171 ILE n 1 172 GLN n 1 173 ILE n 1 174 THR n 1 175 ASP n 1 176 PHE n 1 177 GLY n 1 178 THR n 1 179 ALA n 1 180 LYS n 1 181 VAL n 1 182 LEU n 1 183 SER n 1 184 PRO n 1 185 GLU n 1 186 SER n 1 187 LYS n 1 188 GLN n 1 189 ALA n 1 190 ARG n 1 191 ALA n 1 192 ASN n 1 193 SEP n 1 194 PHE n 1 195 VAL n 1 196 GLY n 1 197 THR n 1 198 ALA n 1 199 GLN n 1 200 TYR n 1 201 VAL n 1 202 SER n 1 203 PRO n 1 204 GLU n 1 205 LEU n 1 206 LEU n 1 207 THR n 1 208 GLU n 1 209 LYS n 1 210 SER n 1 211 ALA n 1 212 CYS n 1 213 LYS n 1 214 SER n 1 215 SER n 1 216 ASP n 1 217 LEU n 1 218 TRP n 1 219 ALA n 1 220 LEU n 1 221 GLY n 1 222 CYS n 1 223 ILE n 1 224 ILE n 1 225 TYR n 1 226 GLN n 1 227 LEU n 1 228 VAL n 1 229 ALA n 1 230 GLY n 1 231 LEU n 1 232 PRO n 1 233 PRO n 1 234 PHE n 1 235 ARG n 1 236 ALA n 1 237 GLY n 1 238 ASN n 1 239 GLU n 1 240 TYR n 1 241 LEU n 1 242 ILE n 1 243 PHE n 1 244 GLN n 1 245 LYS n 1 246 ILE n 1 247 ILE n 1 248 LYS n 1 249 LEU n 1 250 GLU n 1 251 TYR n 1 252 ASP n 1 253 PHE n 1 254 PRO n 1 255 GLU n 1 256 LYS n 1 257 PHE n 1 258 PHE n 1 259 PRO n 1 260 LYS n 1 261 ALA n 1 262 ARG n 1 263 ASP n 1 264 LEU n 1 265 VAL n 1 266 GLU n 1 267 LYS n 1 268 LEU n 1 269 LEU n 1 270 VAL n 1 271 LEU n 1 272 ASP n 1 273 ALA n 1 274 THR n 1 275 LYS n 1 276 ARG n 1 277 LEU n 1 278 GLY n 1 279 CYS n 1 280 GLU n 1 281 GLU n 1 282 MET n 1 283 GLU n 1 284 GLY n 1 285 TYR n 1 286 GLY n 1 287 PRO n 1 288 LEU n 1 289 LYS n 1 290 ALA n 1 291 HIS n 1 292 PRO n 1 293 PHE n 1 294 PHE n 1 295 GLU n 1 296 SER n 1 297 VAL n 1 298 THR n 1 299 TRP n 1 300 GLU n 1 301 ASN n 1 302 LEU n 1 303 HIS n 1 304 GLN n 1 305 GLN n 1 306 THR n 1 307 PRO n 1 308 PRO n 1 309 LYS n 1 310 LEU n 1 311 THR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDPK1_HUMAN _struct_ref.pdbx_db_accession O15530 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPAMDGTAAEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYV TRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLK PENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE YLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT ; _struct_ref.pdbx_align_begin 48 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3H9O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 311 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15530 _struct_ref_seq.db_align_beg 48 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 359 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 49 _struct_ref_seq.pdbx_auth_seq_align_end 359 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3H9O _struct_ref_seq_dif.mon_id ? _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num ? _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O15530 _struct_ref_seq_dif.db_mon_id ALA _struct_ref_seq_dif.pdbx_seq_db_seq_num 50 _struct_ref_seq_dif.details VARIANT _struct_ref_seq_dif.pdbx_auth_seq_num ? _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9BD non-polymer . '2-(1H-imidazol-1-yl)-9-methoxy-8-(2-methoxyethoxy)benzo[c][2,7]naphthyridin-4-amine' ? 'C19 H19 N5 O3' 365.386 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SEP 'L-peptide linking' n PHOSPHOSERINE PHOSPHONOSERINE 'C3 H8 N O6 P' 185.072 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3H9O _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_percent_sol 57.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3H9O _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 107.2 _reflns.d_resolution_high 2.3 _reflns.number_obs 18783 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3H9O _refine.ls_number_reflns_obs 18530 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.40 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.469 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs 99.18 _refine.ls_R_factor_obs 0.2112 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2089 _refine.ls_R_factor_R_free 0.2558 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.10 _refine.ls_number_reflns_R_free 945 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.383 _refine.solvent_model_param_bsol 47.555 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.34 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2258 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 99 _refine_hist.number_atoms_total 2384 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 28.469 # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3000 2.4212 2358 0.2403 95.00 0.2974 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.4212 2.5728 2491 0.2260 100.00 0.2978 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.5728 2.7713 2511 0.2239 100.00 0.2510 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.7713 3.0499 2484 0.2062 100.00 0.2761 . . 151 . . . . 'X-RAY DIFFRACTION' . 3.0499 3.4906 2541 0.2069 100.00 0.2391 . . 118 . . . . 'X-RAY DIFFRACTION' . 3.4906 4.3952 2560 0.1695 100.00 0.2139 . . 124 . . . . 'X-RAY DIFFRACTION' . 4.3952 28.4715 2640 0.1922 100.00 0.2215 . . 122 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3H9O _struct.title 'Phosphoinositide-dependent protein kinase 1 (PDK-1) in complex with compound 9' _struct.pdbx_descriptor '3-phosphoinositide-dependent protein kinase 1 (E.C.2.7.11.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3H9O _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;PDK-1, kinase, protein structure, X-ray crysatllography, Alternative splicing, ATP-binding, Cytoplasm, Membrane, Nucleotide-binding, Phosphoprotein, Serine/threonine-protein kinase, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 30 ? GLU A 32 ? ARG A 78 GLU A 80 5 ? 3 HELX_P HELX_P2 2 LYS A 67 ? GLU A 73 ? LYS A 115 GLU A 121 1 ? 7 HELX_P HELX_P3 3 LYS A 75 ? ARG A 88 ? LYS A 123 ARG A 136 1 ? 14 HELX_P HELX_P4 4 GLU A 118 ? GLY A 127 ? GLU A 166 GLY A 175 1 ? 10 HELX_P HELX_P5 5 ASP A 130 ? LYS A 151 ? ASP A 178 LYS A 199 1 ? 22 HELX_P HELX_P6 6 THR A 197 ? VAL A 201 ? THR A 245 VAL A 249 5 ? 5 HELX_P HELX_P7 7 SER A 202 ? GLU A 208 ? SER A 250 GLU A 256 1 ? 7 HELX_P HELX_P8 8 CYS A 212 ? GLY A 230 ? CYS A 260 GLY A 278 1 ? 19 HELX_P HELX_P9 9 ASN A 238 ? LYS A 248 ? ASN A 286 LYS A 296 1 ? 11 HELX_P HELX_P10 10 PHE A 258 ? LYS A 267 ? PHE A 306 LYS A 315 1 ? 10 HELX_P HELX_P11 11 ASP A 272 ? ARG A 276 ? ASP A 320 ARG A 324 5 ? 5 HELX_P HELX_P12 12 CYS A 279 ? GLU A 283 ? CYS A 327 GLU A 331 5 ? 5 HELX_P HELX_P13 13 GLY A 284 ? ALA A 290 ? GLY A 332 ALA A 338 1 ? 7 HELX_P HELX_P14 14 HIS A 291 ? GLU A 295 ? HIS A 339 GLU A 343 5 ? 5 HELX_P HELX_P15 15 THR A 298 ? GLN A 305 ? THR A 346 GLN A 353 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 193 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 194 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.330 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 34 ? GLU A 42 ? PHE A 82 GLU A 90 A 2 THR A 47 ? GLU A 53 ? THR A 95 GLU A 101 A 3 GLU A 59 ? GLU A 66 ? GLU A 107 GLU A 114 A 4 LYS A 106 ? SER A 112 ? LYS A 154 SER A 160 A 5 LEU A 97 ? GLN A 102 ? LEU A 145 GLN A 150 B 1 ILE A 153 ? ILE A 154 ? ILE A 201 ILE A 202 B 2 LYS A 180 ? VAL A 181 ? LYS A 228 VAL A 229 C 1 ILE A 163 ? LEU A 165 ? ILE A 211 LEU A 213 C 2 ILE A 171 ? ILE A 173 ? ILE A 219 ILE A 221 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 41 ? N GLY A 89 O VAL A 48 ? O VAL A 96 A 2 3 N THR A 47 ? N THR A 95 O ILE A 64 ? O ILE A 112 A 3 4 N LEU A 65 ? N LEU A 113 O LEU A 107 ? O LEU A 155 A 4 5 O GLY A 110 ? O GLY A 158 N PHE A 99 ? N PHE A 147 B 1 2 N ILE A 154 ? N ILE A 202 O LYS A 180 ? O LYS A 228 C 1 2 N LEU A 164 ? N LEU A 212 O GLN A 172 ? O GLN A 220 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE 9BD A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 LEU A 40 ? LEU A 88 . ? 1_555 ? 2 AC1 13 ALA A 61 ? ALA A 109 . ? 1_555 ? 3 AC1 13 LYS A 63 ? LYS A 111 . ? 1_555 ? 4 AC1 13 VAL A 95 ? VAL A 143 . ? 1_555 ? 5 AC1 13 LEU A 111 ? LEU A 159 . ? 1_555 ? 6 AC1 13 SER A 112 ? SER A 160 . ? 1_555 ? 7 AC1 13 TYR A 113 ? TYR A 161 . ? 1_555 ? 8 AC1 13 ALA A 114 ? ALA A 162 . ? 1_555 ? 9 AC1 13 LYS A 115 ? LYS A 163 . ? 1_555 ? 10 AC1 13 GLU A 118 ? GLU A 166 . ? 1_555 ? 11 AC1 13 LEU A 164 ? LEU A 212 . ? 1_555 ? 12 AC1 13 THR A 174 ? THR A 222 . ? 1_555 ? 13 AC1 13 ASP A 175 ? ASP A 223 . ? 1_555 ? # _database_PDB_matrix.entry_id 3H9O _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3H9O _atom_sites.fract_transf_matrix[1][1] 0.008080 _atom_sites.fract_transf_matrix[1][2] 0.004665 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009329 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021224 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 49 ? ? ? A . n A 1 2 PRO 2 50 ? ? ? A . n A 1 3 MET 3 51 ? ? ? A . n A 1 4 ASP 4 52 ? ? ? A . n A 1 5 GLY 5 53 ? ? ? A . n A 1 6 THR 6 54 ? ? ? A . n A 1 7 ALA 7 55 ? ? ? A . n A 1 8 ALA 8 56 ? ? ? A . n A 1 9 GLU 9 57 ? ? ? A . n A 1 10 PRO 10 58 ? ? ? A . n A 1 11 ARG 11 59 ? ? ? A . n A 1 12 PRO 12 60 ? ? ? A . n A 1 13 GLY 13 61 ? ? ? A . n A 1 14 ALA 14 62 ? ? ? A . n A 1 15 GLY 15 63 ? ? ? A . n A 1 16 SER 16 64 ? ? ? A . n A 1 17 LEU 17 65 ? ? ? A . n A 1 18 GLN 18 66 ? ? ? A . n A 1 19 HIS 19 67 ? ? ? A . n A 1 20 ALA 20 68 ? ? ? A . n A 1 21 GLN 21 69 ? ? ? A . n A 1 22 PRO 22 70 ? ? ? A . n A 1 23 PRO 23 71 ? ? ? A . n A 1 24 PRO 24 72 ? ? ? A . n A 1 25 GLN 25 73 ? ? ? A . n A 1 26 PRO 26 74 ? ? ? A . n A 1 27 ARG 27 75 75 ARG ARG A . n A 1 28 LYS 28 76 76 LYS LYS A . n A 1 29 LYS 29 77 77 LYS LYS A . n A 1 30 ARG 30 78 78 ARG ARG A . n A 1 31 PRO 31 79 79 PRO PRO A . n A 1 32 GLU 32 80 80 GLU GLU A . n A 1 33 ASP 33 81 81 ASP ASP A . n A 1 34 PHE 34 82 82 PHE PHE A . n A 1 35 LYS 35 83 83 LYS LYS A . n A 1 36 PHE 36 84 84 PHE PHE A . n A 1 37 GLY 37 85 85 GLY GLY A . n A 1 38 LYS 38 86 86 LYS LYS A . n A 1 39 ILE 39 87 87 ILE ILE A . n A 1 40 LEU 40 88 88 LEU LEU A . n A 1 41 GLY 41 89 89 GLY GLY A . n A 1 42 GLU 42 90 90 GLU GLU A . n A 1 43 GLY 43 91 91 GLY GLY A . n A 1 44 SER 44 92 92 SER SER A . n A 1 45 PHE 45 93 93 PHE PHE A . n A 1 46 SER 46 94 94 SER SER A . n A 1 47 THR 47 95 95 THR THR A . n A 1 48 VAL 48 96 96 VAL VAL A . n A 1 49 VAL 49 97 97 VAL VAL A . n A 1 50 LEU 50 98 98 LEU LEU A . n A 1 51 ALA 51 99 99 ALA ALA A . n A 1 52 ARG 52 100 100 ARG ARG A . n A 1 53 GLU 53 101 101 GLU GLU A . n A 1 54 LEU 54 102 102 LEU LEU A . n A 1 55 ALA 55 103 103 ALA ALA A . n A 1 56 THR 56 104 104 THR THR A . n A 1 57 SER 57 105 105 SER SER A . n A 1 58 ARG 58 106 106 ARG ARG A . n A 1 59 GLU 59 107 107 GLU GLU A . n A 1 60 TYR 60 108 108 TYR TYR A . n A 1 61 ALA 61 109 109 ALA ALA A . n A 1 62 ILE 62 110 110 ILE ILE A . n A 1 63 LYS 63 111 111 LYS LYS A . n A 1 64 ILE 64 112 112 ILE ILE A . n A 1 65 LEU 65 113 113 LEU LEU A . n A 1 66 GLU 66 114 114 GLU GLU A . n A 1 67 LYS 67 115 115 LYS LYS A . n A 1 68 ARG 68 116 116 ARG ARG A . n A 1 69 HIS 69 117 117 HIS HIS A . n A 1 70 ILE 70 118 118 ILE ILE A . n A 1 71 ILE 71 119 119 ILE ILE A . n A 1 72 LYS 72 120 120 LYS LYS A . n A 1 73 GLU 73 121 121 GLU GLU A . n A 1 74 ASN 74 122 122 ASN ASN A . n A 1 75 LYS 75 123 123 LYS LYS A . n A 1 76 VAL 76 124 124 VAL VAL A . n A 1 77 PRO 77 125 125 PRO PRO A . n A 1 78 TYR 78 126 126 TYR TYR A . n A 1 79 VAL 79 127 127 VAL VAL A . n A 1 80 THR 80 128 128 THR THR A . n A 1 81 ARG 81 129 129 ARG ARG A . n A 1 82 GLU 82 130 130 GLU GLU A . n A 1 83 ARG 83 131 131 ARG ARG A . n A 1 84 ASP 84 132 132 ASP ASP A . n A 1 85 VAL 85 133 133 VAL VAL A . n A 1 86 MET 86 134 134 MET MET A . n A 1 87 SER 87 135 135 SER SER A . n A 1 88 ARG 88 136 136 ARG ARG A . n A 1 89 LEU 89 137 137 LEU LEU A . n A 1 90 ASP 90 138 138 ASP ASP A . n A 1 91 HIS 91 139 139 HIS HIS A . n A 1 92 PRO 92 140 140 PRO PRO A . n A 1 93 PHE 93 141 141 PHE PHE A . n A 1 94 PHE 94 142 142 PHE PHE A . n A 1 95 VAL 95 143 143 VAL VAL A . n A 1 96 LYS 96 144 144 LYS LYS A . n A 1 97 LEU 97 145 145 LEU LEU A . n A 1 98 TYR 98 146 146 TYR TYR A . n A 1 99 PHE 99 147 147 PHE PHE A . n A 1 100 THR 100 148 148 THR THR A . n A 1 101 PHE 101 149 149 PHE PHE A . n A 1 102 GLN 102 150 150 GLN GLN A . n A 1 103 ASP 103 151 151 ASP ASP A . n A 1 104 ASP 104 152 152 ASP ASP A . n A 1 105 GLU 105 153 153 GLU GLU A . n A 1 106 LYS 106 154 154 LYS LYS A . n A 1 107 LEU 107 155 155 LEU LEU A . n A 1 108 TYR 108 156 156 TYR TYR A . n A 1 109 PHE 109 157 157 PHE PHE A . n A 1 110 GLY 110 158 158 GLY GLY A . n A 1 111 LEU 111 159 159 LEU LEU A . n A 1 112 SER 112 160 160 SER SER A . n A 1 113 TYR 113 161 161 TYR TYR A . n A 1 114 ALA 114 162 162 ALA ALA A . n A 1 115 LYS 115 163 163 LYS LYS A . n A 1 116 ASN 116 164 164 ASN ASN A . n A 1 117 GLY 117 165 165 GLY GLY A . n A 1 118 GLU 118 166 166 GLU GLU A . n A 1 119 LEU 119 167 167 LEU LEU A . n A 1 120 LEU 120 168 168 LEU LEU A . n A 1 121 LYS 121 169 169 LYS LYS A . n A 1 122 TYR 122 170 170 TYR TYR A . n A 1 123 ILE 123 171 171 ILE ILE A . n A 1 124 ARG 124 172 172 ARG ARG A . n A 1 125 LYS 125 173 173 LYS LYS A . n A 1 126 ILE 126 174 174 ILE ILE A . n A 1 127 GLY 127 175 175 GLY GLY A . n A 1 128 SER 128 176 176 SER SER A . n A 1 129 PHE 129 177 177 PHE PHE A . n A 1 130 ASP 130 178 178 ASP ASP A . n A 1 131 GLU 131 179 179 GLU GLU A . n A 1 132 THR 132 180 180 THR THR A . n A 1 133 CYS 133 181 181 CYS CYS A . n A 1 134 THR 134 182 182 THR THR A . n A 1 135 ARG 135 183 183 ARG ARG A . n A 1 136 PHE 136 184 184 PHE PHE A . n A 1 137 TYR 137 185 185 TYR TYR A . n A 1 138 THR 138 186 186 THR THR A . n A 1 139 ALA 139 187 187 ALA ALA A . n A 1 140 GLU 140 188 188 GLU GLU A . n A 1 141 ILE 141 189 189 ILE ILE A . n A 1 142 VAL 142 190 190 VAL VAL A . n A 1 143 SER 143 191 191 SER SER A . n A 1 144 ALA 144 192 192 ALA ALA A . n A 1 145 LEU 145 193 193 LEU LEU A . n A 1 146 GLU 146 194 194 GLU GLU A . n A 1 147 TYR 147 195 195 TYR TYR A . n A 1 148 LEU 148 196 196 LEU LEU A . n A 1 149 HIS 149 197 197 HIS HIS A . n A 1 150 GLY 150 198 198 GLY GLY A . n A 1 151 LYS 151 199 199 LYS LYS A . n A 1 152 GLY 152 200 200 GLY GLY A . n A 1 153 ILE 153 201 201 ILE ILE A . n A 1 154 ILE 154 202 202 ILE ILE A . n A 1 155 HIS 155 203 203 HIS HIS A . n A 1 156 ARG 156 204 204 ARG ARG A . n A 1 157 ASP 157 205 205 ASP ASP A . n A 1 158 LEU 158 206 206 LEU LEU A . n A 1 159 LYS 159 207 207 LYS LYS A . n A 1 160 PRO 160 208 208 PRO PRO A . n A 1 161 GLU 161 209 209 GLU GLU A . n A 1 162 ASN 162 210 210 ASN ASN A . n A 1 163 ILE 163 211 211 ILE ILE A . n A 1 164 LEU 164 212 212 LEU LEU A . n A 1 165 LEU 165 213 213 LEU LEU A . n A 1 166 ASN 166 214 214 ASN ASN A . n A 1 167 GLU 167 215 215 GLU GLU A . n A 1 168 ASP 168 216 216 ASP ASP A . n A 1 169 MET 169 217 217 MET MET A . n A 1 170 HIS 170 218 218 HIS HIS A . n A 1 171 ILE 171 219 219 ILE ILE A . n A 1 172 GLN 172 220 220 GLN GLN A . n A 1 173 ILE 173 221 221 ILE ILE A . n A 1 174 THR 174 222 222 THR THR A . n A 1 175 ASP 175 223 223 ASP ASP A . n A 1 176 PHE 176 224 224 PHE PHE A . n A 1 177 GLY 177 225 225 GLY GLY A . n A 1 178 THR 178 226 226 THR THR A . n A 1 179 ALA 179 227 227 ALA ALA A . n A 1 180 LYS 180 228 228 LYS LYS A . n A 1 181 VAL 181 229 229 VAL VAL A . n A 1 182 LEU 182 230 230 LEU LEU A . n A 1 183 SER 183 231 231 SER SER A . n A 1 184 PRO 184 232 ? ? ? A . n A 1 185 GLU 185 233 ? ? ? A . n A 1 186 SER 186 234 ? ? ? A . n A 1 187 LYS 187 235 ? ? ? A . n A 1 188 GLN 188 236 ? ? ? A . n A 1 189 ALA 189 237 ? ? ? A . n A 1 190 ARG 190 238 ? ? ? A . n A 1 191 ALA 191 239 ? ? ? A . n A 1 192 ASN 192 240 ? ? ? A . n A 1 193 SEP 193 241 241 SEP SEP A . n A 1 194 PHE 194 242 242 PHE PHE A . n A 1 195 VAL 195 243 243 VAL VAL A . n A 1 196 GLY 196 244 244 GLY GLY A . n A 1 197 THR 197 245 245 THR THR A . n A 1 198 ALA 198 246 246 ALA ALA A . n A 1 199 GLN 199 247 247 GLN GLN A . n A 1 200 TYR 200 248 248 TYR TYR A . n A 1 201 VAL 201 249 249 VAL VAL A . n A 1 202 SER 202 250 250 SER SER A . n A 1 203 PRO 203 251 251 PRO PRO A . n A 1 204 GLU 204 252 252 GLU GLU A . n A 1 205 LEU 205 253 253 LEU LEU A . n A 1 206 LEU 206 254 254 LEU LEU A . n A 1 207 THR 207 255 255 THR THR A . n A 1 208 GLU 208 256 256 GLU GLU A . n A 1 209 LYS 209 257 257 LYS LYS A . n A 1 210 SER 210 258 258 SER SER A . n A 1 211 ALA 211 259 259 ALA ALA A . n A 1 212 CYS 212 260 260 CYS CYS A . n A 1 213 LYS 213 261 261 LYS LYS A . n A 1 214 SER 214 262 262 SER SER A . n A 1 215 SER 215 263 263 SER SER A . n A 1 216 ASP 216 264 264 ASP ASP A . n A 1 217 LEU 217 265 265 LEU LEU A . n A 1 218 TRP 218 266 266 TRP TRP A . n A 1 219 ALA 219 267 267 ALA ALA A . n A 1 220 LEU 220 268 268 LEU LEU A . n A 1 221 GLY 221 269 269 GLY GLY A . n A 1 222 CYS 222 270 270 CYS CYS A . n A 1 223 ILE 223 271 271 ILE ILE A . n A 1 224 ILE 224 272 272 ILE ILE A . n A 1 225 TYR 225 273 273 TYR TYR A . n A 1 226 GLN 226 274 274 GLN GLN A . n A 1 227 LEU 227 275 275 LEU LEU A . n A 1 228 VAL 228 276 276 VAL VAL A . n A 1 229 ALA 229 277 277 ALA ALA A . n A 1 230 GLY 230 278 278 GLY GLY A . n A 1 231 LEU 231 279 279 LEU LEU A . n A 1 232 PRO 232 280 280 PRO PRO A . n A 1 233 PRO 233 281 281 PRO PRO A . n A 1 234 PHE 234 282 282 PHE PHE A . n A 1 235 ARG 235 283 283 ARG ARG A . n A 1 236 ALA 236 284 284 ALA ALA A . n A 1 237 GLY 237 285 285 GLY GLY A . n A 1 238 ASN 238 286 286 ASN ASN A . n A 1 239 GLU 239 287 287 GLU GLU A . n A 1 240 TYR 240 288 288 TYR TYR A . n A 1 241 LEU 241 289 289 LEU LEU A . n A 1 242 ILE 242 290 290 ILE ILE A . n A 1 243 PHE 243 291 291 PHE PHE A . n A 1 244 GLN 244 292 292 GLN GLN A . n A 1 245 LYS 245 293 293 LYS LYS A . n A 1 246 ILE 246 294 294 ILE ILE A . n A 1 247 ILE 247 295 295 ILE ILE A . n A 1 248 LYS 248 296 296 LYS LYS A . n A 1 249 LEU 249 297 297 LEU LEU A . n A 1 250 GLU 250 298 298 GLU GLU A . n A 1 251 TYR 251 299 299 TYR TYR A . n A 1 252 ASP 252 300 300 ASP ASP A . n A 1 253 PHE 253 301 301 PHE PHE A . n A 1 254 PRO 254 302 302 PRO PRO A . n A 1 255 GLU 255 303 303 GLU GLU A . n A 1 256 LYS 256 304 304 LYS LYS A . n A 1 257 PHE 257 305 305 PHE PHE A . n A 1 258 PHE 258 306 306 PHE PHE A . n A 1 259 PRO 259 307 307 PRO PRO A . n A 1 260 LYS 260 308 308 LYS LYS A . n A 1 261 ALA 261 309 309 ALA ALA A . n A 1 262 ARG 262 310 310 ARG ARG A . n A 1 263 ASP 263 311 311 ASP ASP A . n A 1 264 LEU 264 312 312 LEU LEU A . n A 1 265 VAL 265 313 313 VAL VAL A . n A 1 266 GLU 266 314 314 GLU GLU A . n A 1 267 LYS 267 315 315 LYS LYS A . n A 1 268 LEU 268 316 316 LEU LEU A . n A 1 269 LEU 269 317 317 LEU LEU A . n A 1 270 VAL 270 318 318 VAL VAL A . n A 1 271 LEU 271 319 319 LEU LEU A . n A 1 272 ASP 272 320 320 ASP ASP A . n A 1 273 ALA 273 321 321 ALA ALA A . n A 1 274 THR 274 322 322 THR THR A . n A 1 275 LYS 275 323 323 LYS LYS A . n A 1 276 ARG 276 324 324 ARG ARG A . n A 1 277 LEU 277 325 325 LEU LEU A . n A 1 278 GLY 278 326 326 GLY GLY A . n A 1 279 CYS 279 327 327 CYS CYS A . n A 1 280 GLU 280 328 328 GLU GLU A . n A 1 281 GLU 281 329 329 GLU GLU A . n A 1 282 MET 282 330 330 MET MET A . n A 1 283 GLU 283 331 331 GLU GLU A . n A 1 284 GLY 284 332 332 GLY GLY A . n A 1 285 TYR 285 333 333 TYR TYR A . n A 1 286 GLY 286 334 334 GLY GLY A . n A 1 287 PRO 287 335 335 PRO PRO A . n A 1 288 LEU 288 336 336 LEU LEU A . n A 1 289 LYS 289 337 337 LYS LYS A . n A 1 290 ALA 290 338 338 ALA ALA A . n A 1 291 HIS 291 339 339 HIS HIS A . n A 1 292 PRO 292 340 340 PRO PRO A . n A 1 293 PHE 293 341 341 PHE PHE A . n A 1 294 PHE 294 342 342 PHE PHE A . n A 1 295 GLU 295 343 343 GLU GLU A . n A 1 296 SER 296 344 344 SER SER A . n A 1 297 VAL 297 345 345 VAL VAL A . n A 1 298 THR 298 346 346 THR THR A . n A 1 299 TRP 299 347 347 TRP TRP A . n A 1 300 GLU 300 348 348 GLU GLU A . n A 1 301 ASN 301 349 349 ASN ASN A . n A 1 302 LEU 302 350 350 LEU LEU A . n A 1 303 HIS 303 351 351 HIS HIS A . n A 1 304 GLN 304 352 352 GLN GLN A . n A 1 305 GLN 305 353 353 GLN GLN A . n A 1 306 THR 306 354 354 THR THR A . n A 1 307 PRO 307 355 355 PRO PRO A . n A 1 308 PRO 308 356 356 PRO PRO A . n A 1 309 LYS 309 357 357 LYS LYS A . n A 1 310 LEU 310 358 358 LEU LEU A . n A 1 311 THR 311 359 359 THR THR A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id SEP _pdbx_struct_mod_residue.label_seq_id 193 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id SEP _pdbx_struct_mod_residue.auth_seq_id 241 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details PHOSPHOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-25 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal 'PROTEUM PLUS' 'data collection' PLUS ? 1 AMoRE phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 SAINT 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 105 ? ? 83.68 0.02 2 1 ASP A 151 ? ? -104.24 -161.09 3 1 ASP A 178 ? ? -64.10 -176.59 4 1 ARG A 204 ? ? 80.30 -1.11 5 1 ASP A 205 ? ? -151.54 37.69 6 1 ASP A 223 ? ? 66.62 79.57 7 1 PHE A 242 ? ? -121.06 -79.05 8 1 VAL A 243 ? ? 77.50 119.89 9 1 THR A 255 ? ? -108.72 -72.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 243 ? CG1 ? A VAL 195 CG1 2 1 Y 1 A VAL 243 ? CG2 ? A VAL 195 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 49 ? A GLY 1 2 1 Y 1 A PRO 50 ? A PRO 2 3 1 Y 1 A MET 51 ? A MET 3 4 1 Y 1 A ASP 52 ? A ASP 4 5 1 Y 1 A GLY 53 ? A GLY 5 6 1 Y 1 A THR 54 ? A THR 6 7 1 Y 1 A ALA 55 ? A ALA 7 8 1 Y 1 A ALA 56 ? A ALA 8 9 1 Y 1 A GLU 57 ? A GLU 9 10 1 Y 1 A PRO 58 ? A PRO 10 11 1 Y 1 A ARG 59 ? A ARG 11 12 1 Y 1 A PRO 60 ? A PRO 12 13 1 Y 1 A GLY 61 ? A GLY 13 14 1 Y 1 A ALA 62 ? A ALA 14 15 1 Y 1 A GLY 63 ? A GLY 15 16 1 Y 1 A SER 64 ? A SER 16 17 1 Y 1 A LEU 65 ? A LEU 17 18 1 Y 1 A GLN 66 ? A GLN 18 19 1 Y 1 A HIS 67 ? A HIS 19 20 1 Y 1 A ALA 68 ? A ALA 20 21 1 Y 1 A GLN 69 ? A GLN 21 22 1 Y 1 A PRO 70 ? A PRO 22 23 1 Y 1 A PRO 71 ? A PRO 23 24 1 Y 1 A PRO 72 ? A PRO 24 25 1 Y 1 A GLN 73 ? A GLN 25 26 1 Y 1 A PRO 74 ? A PRO 26 27 1 Y 1 A PRO 232 ? A PRO 184 28 1 Y 1 A GLU 233 ? A GLU 185 29 1 Y 1 A SER 234 ? A SER 186 30 1 Y 1 A LYS 235 ? A LYS 187 31 1 Y 1 A GLN 236 ? A GLN 188 32 1 Y 1 A ALA 237 ? A ALA 189 33 1 Y 1 A ARG 238 ? A ARG 190 34 1 Y 1 A ALA 239 ? A ALA 191 35 1 Y 1 A ASN 240 ? A ASN 192 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-(1H-imidazol-1-yl)-9-methoxy-8-(2-methoxyethoxy)benzo[c][2,7]naphthyridin-4-amine' 9BD 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9BD 1 1 1 9BD 9BD A . C 3 HOH 1 2 2 HOH HOH A . C 3 HOH 2 3 3 HOH HOH A . C 3 HOH 3 4 4 HOH HOH A . C 3 HOH 4 5 5 HOH HOH A . C 3 HOH 5 6 6 HOH HOH A . C 3 HOH 6 7 7 HOH HOH A . C 3 HOH 7 8 8 HOH HOH A . C 3 HOH 8 9 9 HOH HOH A . C 3 HOH 9 10 10 HOH HOH A . C 3 HOH 10 11 11 HOH HOH A . C 3 HOH 11 12 12 HOH HOH A . C 3 HOH 12 13 13 HOH HOH A . C 3 HOH 13 14 14 HOH HOH A . C 3 HOH 14 15 15 HOH HOH A . C 3 HOH 15 16 16 HOH HOH A . C 3 HOH 16 17 17 HOH HOH A . C 3 HOH 17 18 18 HOH HOH A . C 3 HOH 18 19 19 HOH HOH A . C 3 HOH 19 20 20 HOH HOH A . C 3 HOH 20 21 21 HOH HOH A . C 3 HOH 21 22 22 HOH HOH A . C 3 HOH 22 23 23 HOH HOH A . C 3 HOH 23 24 24 HOH HOH A . C 3 HOH 24 25 25 HOH HOH A . C 3 HOH 25 26 26 HOH HOH A . C 3 HOH 26 27 27 HOH HOH A . C 3 HOH 27 28 28 HOH HOH A . C 3 HOH 28 29 29 HOH HOH A . C 3 HOH 29 30 30 HOH HOH A . C 3 HOH 30 31 31 HOH HOH A . C 3 HOH 31 32 32 HOH HOH A . C 3 HOH 32 33 33 HOH HOH A . C 3 HOH 33 34 34 HOH HOH A . C 3 HOH 34 35 35 HOH HOH A . C 3 HOH 35 36 36 HOH HOH A . C 3 HOH 36 37 37 HOH HOH A . C 3 HOH 37 38 38 HOH HOH A . C 3 HOH 38 39 39 HOH HOH A . C 3 HOH 39 40 40 HOH HOH A . C 3 HOH 40 41 41 HOH HOH A . C 3 HOH 41 42 42 HOH HOH A . C 3 HOH 42 43 43 HOH HOH A . C 3 HOH 43 44 44 HOH HOH A . C 3 HOH 44 45 45 HOH HOH A . C 3 HOH 45 46 46 HOH HOH A . C 3 HOH 46 47 47 HOH HOH A . C 3 HOH 47 48 48 HOH HOH A . C 3 HOH 48 360 1 HOH HOH A . C 3 HOH 49 361 49 HOH HOH A . C 3 HOH 50 362 50 HOH HOH A . C 3 HOH 51 363 51 HOH HOH A . C 3 HOH 52 364 52 HOH HOH A . C 3 HOH 53 365 53 HOH HOH A . C 3 HOH 54 366 54 HOH HOH A . C 3 HOH 55 367 55 HOH HOH A . C 3 HOH 56 368 56 HOH HOH A . C 3 HOH 57 369 57 HOH HOH A . C 3 HOH 58 370 58 HOH HOH A . C 3 HOH 59 371 60 HOH HOH A . C 3 HOH 60 372 61 HOH HOH A . C 3 HOH 61 373 62 HOH HOH A . C 3 HOH 62 374 63 HOH HOH A . C 3 HOH 63 375 64 HOH HOH A . C 3 HOH 64 376 65 HOH HOH A . C 3 HOH 65 377 66 HOH HOH A . C 3 HOH 66 378 67 HOH HOH A . C 3 HOH 67 379 68 HOH HOH A . C 3 HOH 68 380 69 HOH HOH A . C 3 HOH 69 381 70 HOH HOH A . C 3 HOH 70 382 71 HOH HOH A . C 3 HOH 71 383 72 HOH HOH A . C 3 HOH 72 384 73 HOH HOH A . C 3 HOH 73 385 74 HOH HOH A . C 3 HOH 74 386 75 HOH HOH A . C 3 HOH 75 387 76 HOH HOH A . C 3 HOH 76 388 77 HOH HOH A . C 3 HOH 77 389 79 HOH HOH A . C 3 HOH 78 390 80 HOH HOH A . C 3 HOH 79 391 81 HOH HOH A . C 3 HOH 80 392 82 HOH HOH A . C 3 HOH 81 393 83 HOH HOH A . C 3 HOH 82 394 84 HOH HOH A . C 3 HOH 83 395 85 HOH HOH A . C 3 HOH 84 396 86 HOH HOH A . C 3 HOH 85 397 87 HOH HOH A . C 3 HOH 86 398 88 HOH HOH A . C 3 HOH 87 399 89 HOH HOH A . C 3 HOH 88 400 90 HOH HOH A . C 3 HOH 89 401 91 HOH HOH A . C 3 HOH 90 402 93 HOH HOH A . C 3 HOH 91 403 94 HOH HOH A . C 3 HOH 92 404 96 HOH HOH A . C 3 HOH 93 405 97 HOH HOH A . C 3 HOH 94 406 98 HOH HOH A . C 3 HOH 95 407 99 HOH HOH A . C 3 HOH 96 408 100 HOH HOH A . C 3 HOH 97 409 101 HOH HOH A . C 3 HOH 98 410 102 HOH HOH A . C 3 HOH 99 411 103 HOH HOH A . #